AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1174850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174850 MtrunA17_Chr8g0344681 96.257 374 10 2 1 373 1 371 0.0 729
Msa1174850 MtrunA17_Chr2g0283871 59.804 102 37 2 66 166 19 117 7.84e-36 133
Msa1174850 MtrunA17_Chr2g0283871 50.649 77 35 1 265 341 236 309 6.46e-18 83.6
Msa1174850 MtrunA17_Chr2g0331931 30.483 269 135 8 70 336 274 492 4.42e-24 103
Msa1174850 MtrunA17_Chr3g0082261 26.518 313 165 12 54 335 21 299 5.07e-19 87.0
Msa1174850 MtrunA17_Chr2g0325841 32.990 194 91 9 28 216 20 179 3.02e-17 83.6
Msa1174850 MtrunA17_Chr4g0041151 54.688 64 29 0 278 341 234 297 4.36e-17 80.9
Msa1174850 MtrunA17_Chr6g0485241 36.000 100 59 2 70 169 130 224 6.37e-17 81.3
Msa1174850 MtrunA17_Chr1g0164461 36.066 122 68 2 54 174 21 133 3.78e-15 73.2
Msa1174850 MtrunA17_Chr1g0179531 34.375 96 57 2 70 165 133 222 6.81e-15 75.9
Msa1174850 MtrunA17_Chr4g0066271 32.632 95 62 1 69 163 116 208 1.04e-13 72.0
Msa1174850 MtrunA17_Chr7g0250201 30.208 96 66 1 69 163 45 140 6.12e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174850 AT3G14180.1 47.689 411 117 13 34 355 24 425 1.88e-97 297
Msa1174850 AT1G54060.1 40.244 410 167 13 1 359 1 383 7.89e-60 198
Msa1174850 AT5G05550.3 39.100 289 115 8 65 351 19 248 2.30e-46 159
Msa1174850 AT3G11100.1 41.637 281 105 7 64 340 16 241 2.46e-46 159
Msa1174850 AT3G58630.2 36.934 287 151 8 66 336 22 294 4.91e-46 160
Msa1174850 AT3G58630.1 36.934 287 151 8 66 336 22 294 7.24e-46 160
Msa1174850 AT5G05550.1 39.437 284 111 8 65 346 19 243 2.81e-45 156
Msa1174850 AT5G05550.2 39.781 274 105 7 65 336 19 234 4.24e-45 155
Msa1174850 AT3G10030.2 36.283 113 66 2 70 182 161 267 4.21e-18 86.3
Msa1174850 AT3G10030.1 36.283 113 66 2 70 182 161 267 5.35e-18 85.9
Msa1174850 AT3G54390.1 26.715 277 160 10 66 335 34 274 1.15e-17 82.8
Msa1174850 AT3G54390.2 26.715 277 160 10 66 335 50 290 1.65e-17 82.8
Msa1174850 AT3G24490.1 34.959 123 72 3 70 191 90 205 5.41e-17 81.6
Msa1174850 AT2G44730.1 32.632 95 62 1 69 163 63 155 2.60e-12 67.8
Msa1174850 AT3G24860.1 28.800 125 67 3 39 163 45 147 2.99e-12 67.4

Find 101 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCAGGCAATTGTGAAATT+TGG 0.238839 8_1:-6060646 Msa1174850:CDS
GATGAAGTTTGCTAAGGATT+TGG 0.272524 8_1:-6060560 Msa1174850:CDS
GATCGGTTAGATCAGTTAAT+TGG 0.279898 8_1:-6061018 Msa1174850:CDS
GCCAAGATTAGTGGTGTTTC+CGG 0.285327 8_1:-6060988 Msa1174850:CDS
CACTGTCACTGTTATTGTTA+TGG 0.294667 8_1:+6060395 None:intergenic
GAGGTTGCGGAGATTGTTAA+TGG 0.341472 8_1:-6061189 Msa1174850:CDS
TCCATCTCCGGTGTCGTCTC+CGG 0.352746 8_1:-6061421 Msa1174850:CDS
TTCGGTAACGGTTGCGGCAC+CGG 0.358803 8_1:-6061382 Msa1174850:CDS
AAATTCGAAGGGGAGAGGTT+GGG 0.373866 8_1:-6060689 Msa1174850:CDS
CCTGTTGGTATTCGCGCCTC+TGG 0.397120 8_1:-6060910 Msa1174850:CDS
GTGGAGGGAGGGAGGATTGT+TGG 0.405449 8_1:-6061302 Msa1174850:CDS
GGGAGCGATCGGTAGGATTT+CGG 0.406001 8_1:-6061400 Msa1174850:CDS
CCATCTCCGGTGTCGTCTCC+GGG 0.410853 8_1:-6061420 Msa1174850:CDS
AGCGTGGGGAGAGAGGTATT+TGG 0.415050 8_1:-6061250 Msa1174850:CDS
AATTCGAAGGGGAGAGGTTG+GGG 0.424508 8_1:-6060688 Msa1174850:CDS
ATCGGTGCTGGAGGTGGCTC+CGG 0.432598 8_1:-6061072 Msa1174850:CDS
ACCGGAAACACCACTAATCT+TGG 0.441082 8_1:+6060987 None:intergenic
GGCGGTGTTGATTGAAGCGT+GGG 0.449332 8_1:-6061265 Msa1174850:CDS
AATGCATAGCTGTTCGCCGC+CGG 0.453869 8_1:+6061363 None:intergenic
GAGGTTGGGGAAGTGCGGTG+AGG 0.461820 8_1:-6060675 Msa1174850:CDS
TAGGATTTCGGTAACGGTTG+CGG 0.463293 8_1:-6061388 Msa1174850:CDS
AGGTTGGGGAAGTGCGGTGA+GGG 0.465619 8_1:-6060674 Msa1174850:CDS
ATCATAAAACCGCCAAGTGC+TGG 0.468333 8_1:+6061038 None:intergenic
GTTTCCGGTACCAGTCATAC+TGG 0.474144 8_1:-6060973 Msa1174850:CDS
GTCGAAGTTGCAGCAGGTGG+TGG 0.476922 8_1:-6060599 Msa1174850:CDS
CAAATTCGAAGGGGAGAGGT+TGG 0.478124 8_1:-6060690 Msa1174850:CDS
GCGGAGATTGTTAATGGAAG+AGG 0.480346 8_1:-6061183 Msa1174850:CDS
CTGATATTCAGTGTAAGAAT+CGG 0.482219 8_1:-6061137 Msa1174850:CDS
GGTCCAGCTGCCAAGATTAG+TGG 0.484802 8_1:-6060997 Msa1174850:CDS
CCAGAGGCGCGAATACCAAC+AGG 0.485804 8_1:+6060910 None:intergenic
GAGATTTCACAGTTGAAACT+TGG 0.487399 8_1:-6060499 Msa1174850:CDS
GGCGAGTGGTTCTCCATCTC+CGG 0.489845 8_1:-6061433 Msa1174850:CDS
GGTTAAGAAGAAGTATAAAT+CGG 0.490848 8_1:-6061106 Msa1174850:CDS
GGAATTTGAAGCAGAAGCAT+TGG 0.493242 8_1:-6061215 Msa1174850:CDS
ACCTTCGCTCTCTTCCTCTC+CGG 0.494047 8_1:+6060721 None:intergenic
GTTGCAGCAGGTGGTGGAGA+TGG 0.496264 8_1:-6060593 Msa1174850:CDS
GAGAAAGCTAAGATCGGTGC+TGG 0.500736 8_1:-6061084 Msa1174850:CDS
GCTCTCTTCCTCTCCGGTGG+TGG 0.502946 8_1:+6060727 None:intergenic
CCACGTGTCGTATTCTGAAT+CGG 0.509196 8_1:+6061333 None:intergenic
GCTAAGATCGGTGCTGGAGG+TGG 0.509682 8_1:-6061078 Msa1174850:CDS
GATCGGTAGGATTTCGGTAA+CGG 0.512806 8_1:-6061394 Msa1174850:CDS
TGGAAGCAACGGTGGAGGGA+GGG 0.519025 8_1:-6061313 Msa1174850:CDS
GTGTCGTCTCCGGGAGCGAT+CGG 0.520173 8_1:-6061411 Msa1174850:CDS
GGTATTTGGAATTGAGCAGA+GGG 0.520971 8_1:-6061236 Msa1174850:CDS
GAAGCATTGGAAAGAGGTTG+CGG 0.521472 8_1:-6061202 Msa1174850:CDS
GGAGAACCACTCGCCGGAGA+TGG 0.523745 8_1:+6061441 None:intergenic
GAAGCAGAAGCATTGGAAAG+AGG 0.525294 8_1:-6061208 Msa1174850:CDS
AATTCAAATTCGAAGGGGAG+AGG 0.527517 8_1:-6060694 Msa1174850:CDS
CCCGGAGACGACACCGGAGA+TGG 0.529470 8_1:+6061420 None:intergenic
TCACAGCAGAAAGTTCCGTT+AGG 0.530119 8_1:-6060937 Msa1174850:CDS
GCAGAGGATGAAGTTTGCTA+AGG 0.530659 8_1:-6060566 Msa1174850:CDS
GGTGATGAATTCAAATTCGA+AGG 0.540299 8_1:-6060701 Msa1174850:CDS
ACACCACTAATCTTGGCAGC+TGG 0.541940 8_1:+6060994 None:intergenic
GAAATCCTACCGATCGCTCC+CGG 0.544759 8_1:+6061402 None:intergenic
GTGGAAGCAACGGTGGAGGG+AGG 0.547610 8_1:-6061314 Msa1174850:CDS
CACGTGGAAGCAACGGTGGA+GGG 0.548507 8_1:-6061317 Msa1174850:CDS
GTGTAAGAATCGGATTGATA+CGG 0.548630 8_1:-6061127 Msa1174850:CDS
ATGACTGTTTCCAGTATGAC+TGG 0.550475 8_1:+6060963 None:intergenic
GGAGACGTCGAAGTTGCAGC+AGG 0.559673 8_1:-6060605 Msa1174850:CDS
TGCGGTGAGGGAATTGACTC+AGG 0.559802 8_1:-6060662 Msa1174850:CDS
AATACGACACGTGGAAGCAA+CGG 0.563694 8_1:-6061324 Msa1174850:CDS
AGGTATTTGGAATTGAGCAG+AGG 0.565655 8_1:-6061237 Msa1174850:CDS
TGGTGGAGATGGAGAAGCAG+AGG 0.566345 8_1:-6060582 Msa1174850:CDS
TGATTGAAGCGTGGGGAGAG+AGG 0.567107 8_1:-6061257 Msa1174850:CDS
GGGGAGAGGTTGGGGAAGTG+CGG 0.570094 8_1:-6060680 Msa1174850:CDS
GTGTTACAACCAGCACTTGG+CGG 0.570584 8_1:-6061047 Msa1174850:CDS
CGGCGGTGTTGATTGAAGCG+TGG 0.570892 8_1:-6061266 Msa1174850:CDS
GACGTCGAAGTTGCAGCAGG+TGG 0.576057 8_1:-6060602 Msa1174850:CDS
ACACGTGGAAGCAACGGTGG+AGG 0.578608 8_1:-6061318 Msa1174850:CDS
GTTTCCAGTATGACTGGTAC+CGG 0.580255 8_1:+6060969 None:intergenic
GTGATGAATTCAAATTCGAA+GGG 0.583321 8_1:-6060700 Msa1174850:CDS
TTCGCTCTCTTCCTCTCCGG+TGG 0.586645 8_1:+6060724 None:intergenic
AGTGCTGGTTGTAACACCGC+CGG 0.591035 8_1:+6061053 None:intergenic
GCGGTGTTACAACCAGCACT+TGG 0.592137 8_1:-6061050 Msa1174850:CDS
TTGTTGGAGCGAAGCAGCGA+CGG 0.593492 8_1:-6061286 Msa1174850:CDS
AAGCGACAGTTTACCACCAC+CGG 0.595248 8_1:-6060740 Msa1174850:CDS
AAGCAACGGTGGAGGGAGGG+AGG 0.596019 8_1:-6061310 Msa1174850:CDS
GATCCACTCGAATCCATCTC+CGG 0.596077 8_1:-6061454 Msa1174850:CDS
GGTGCTGGAGGTGGCTCCGG+CGG 0.604719 8_1:-6061069 Msa1174850:CDS
ACCGGAGAGGAAGAGAGCGA+AGG 0.606990 8_1:-6060722 Msa1174850:CDS
ATTCGCGCCTCTGGAGCTAG+AGG 0.614912 8_1:-6060901 Msa1174850:CDS
GGTAACGGTTGCGGCACCGG+CGG 0.615757 8_1:-6061379 Msa1174850:CDS
TGGTGAAGCTTATGAACAAG+CGG 0.615901 8_1:-6060626 Msa1174850:CDS
TCGAATCCATCTCCGGCGAG+TGG 0.616080 8_1:-6061447 Msa1174850:CDS
AAATCGGAGAAAGCTAAGAT+CGG 0.619321 8_1:-6061090 Msa1174850:CDS
GTTCCGTTAGGAATTCCTGT+TGG 0.621548 8_1:-6060925 Msa1174850:CDS
TTGGAGCGAAGCAGCGACGG+CGG 0.631965 8_1:-6061283 Msa1174850:CDS
AAAGCTAAGATCGGTGCTGG+AGG 0.634146 8_1:-6061081 Msa1174850:CDS
GGAGATGGAGAACCACTCGC+CGG 0.634434 8_1:+6061435 None:intergenic
GGTAAACTGTCGCTTGACAC+CGG 0.634602 8_1:+6060748 None:intergenic
ATTCGCGCCTCTAGCTCCAG+AGG 0.645061 8_1:+6060894 None:intergenic
ACGACACGTGGAAGCAACGG+TGG 0.649070 8_1:-6061321 Msa1174850:CDS
CCGATTCAGAATACGACACG+TGG 0.663489 8_1:-6061333 Msa1174850:CDS
ATACCAACAGGAATTCCTAA+CGG 0.670478 8_1:+6060922 None:intergenic
TCGCCGGAGATGGATTCGAG+TGG 0.676446 8_1:+6061451 None:intergenic
ACAGTTTACCACCACCGGAG+AGG 0.677094 8_1:-6060735 Msa1174850:CDS
TGATGAATTCAAATTCGAAG+GGG 0.682099 8_1:-6060699 Msa1174850:CDS
TGACGACGACGAGATCCACT+CGG 0.685256 8_1:-6061484 Msa1174850:CDS
GAATTCAGCTCAGAAACGCG+TGG 0.694751 8_1:+6060805 None:intergenic
GCGGTGTTGATTGAAGCGTG+GGG 0.735042 8_1:-6061264 Msa1174850:CDS
AGTGGATCGAGTTAACCGAG+TGG 0.771483 8_1:+6061469 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAAAAGTGTTAATGTTAA+TGG - chr8_1:6061404-6061423 Msa1174850:CDS 20.0%
!!! AGAAAAAGTGTTAATGTTAA+TGG - chr8_1:6061404-6061423 Msa1174850:CDS 20.0%
!! TTACACTGAATATCAGTTTT+CGG + chr8_1:6060738-6060757 None:intergenic 25.0%
!! GGTTAAGAAGAAGTATAAAT+CGG - chr8_1:6060773-6060792 Msa1174850:CDS 25.0%
!! TTACACTGAATATCAGTTTT+CGG + chr8_1:6060738-6060757 None:intergenic 25.0%
!! GGTTAAGAAGAAGTATAAAT+CGG - chr8_1:6060773-6060792 Msa1174850:CDS 25.0%
CTGATATTCAGTGTAAGAAT+CGG - chr8_1:6060742-6060761 Msa1174850:CDS 30.0%
GTGATGAATTCAAATTCGAA+GGG - chr8_1:6061179-6061198 Msa1174850:CDS 30.0%
TGATGAATTCAAATTCGAAG+GGG - chr8_1:6061180-6061199 Msa1174850:CDS 30.0%
CTGATATTCAGTGTAAGAAT+CGG - chr8_1:6060742-6060761 Msa1174850:CDS 30.0%
GTGATGAATTCAAATTCGAA+GGG - chr8_1:6061179-6061198 Msa1174850:CDS 30.0%
TGATGAATTCAAATTCGAAG+GGG - chr8_1:6061180-6061199 Msa1174850:CDS 30.0%
GTGTAAGAATCGGATTGATA+CGG - chr8_1:6060752-6060771 Msa1174850:CDS 35.0%
AAATCGGAGAAAGCTAAGAT+CGG - chr8_1:6060789-6060808 Msa1174850:CDS 35.0%
GATCGGTTAGATCAGTTAAT+TGG - chr8_1:6060861-6060880 Msa1174850:CDS 35.0%
ATACCAACAGGAATTCCTAA+CGG + chr8_1:6060960-6060979 None:intergenic 35.0%
GGTGATGAATTCAAATTCGA+AGG - chr8_1:6061178-6061197 Msa1174850:CDS 35.0%
ACTCAGGCAATTGTGAAATT+TGG - chr8_1:6061233-6061252 Msa1174850:CDS 35.0%
!! GATGAAGTTTGCTAAGGATT+TGG - chr8_1:6061319-6061338 Msa1174850:CDS 35.0%
! GCAGTTTTTCATGAAAACTC+AGG - chr8_1:6061355-6061374 Msa1174850:CDS 35.0%
GAGATTTCACAGTTGAAACT+TGG - chr8_1:6061380-6061399 Msa1174850:CDS 35.0%
CACTGTCACTGTTATTGTTA+TGG + chr8_1:6061487-6061506 None:intergenic 35.0%
GTGTAAGAATCGGATTGATA+CGG - chr8_1:6060752-6060771 Msa1174850:CDS 35.0%
AAATCGGAGAAAGCTAAGAT+CGG - chr8_1:6060789-6060808 Msa1174850:CDS 35.0%
GATCGGTTAGATCAGTTAAT+TGG - chr8_1:6060861-6060880 Msa1174850:CDS 35.0%
ATACCAACAGGAATTCCTAA+CGG + chr8_1:6060960-6060979 None:intergenic 35.0%
GGTGATGAATTCAAATTCGA+AGG - chr8_1:6061178-6061197 Msa1174850:CDS 35.0%
ACTCAGGCAATTGTGAAATT+TGG - chr8_1:6061233-6061252 Msa1174850:CDS 35.0%
!! GATGAAGTTTGCTAAGGATT+TGG - chr8_1:6061319-6061338 Msa1174850:CDS 35.0%
! GCAGTTTTTCATGAAAACTC+AGG - chr8_1:6061355-6061374 Msa1174850:CDS 35.0%
GAGATTTCACAGTTGAAACT+TGG - chr8_1:6061380-6061399 Msa1174850:CDS 35.0%
CACTGTCACTGTTATTGTTA+TGG + chr8_1:6061487-6061506 None:intergenic 35.0%
! AGGTATTTGGAATTGAGCAG+AGG - chr8_1:6060642-6060661 Msa1174850:CDS 40.0%
! GGTATTTGGAATTGAGCAGA+GGG - chr8_1:6060643-6060662 Msa1174850:CDS 40.0%
! GGAATTTGAAGCAGAAGCAT+TGG - chr8_1:6060664-6060683 Msa1174850:CDS 40.0%
ATGACTGTTTCCAGTATGAC+TGG + chr8_1:6060919-6060938 None:intergenic 40.0%
!! TGAAAAAGAAGCGTTGTCAC+CGG - chr8_1:6061112-6061131 Msa1174850:CDS 40.0%
AATTCAAATTCGAAGGGGAG+AGG - chr8_1:6061185-6061204 Msa1174850:CDS 40.0%
TGGTGAAGCTTATGAACAAG+CGG - chr8_1:6061253-6061272 Msa1174850:CDS 40.0%
! AGGTATTTGGAATTGAGCAG+AGG - chr8_1:6060642-6060661 Msa1174850:CDS 40.0%
! GGTATTTGGAATTGAGCAGA+GGG - chr8_1:6060643-6060662 Msa1174850:CDS 40.0%
! GGAATTTGAAGCAGAAGCAT+TGG - chr8_1:6060664-6060683 Msa1174850:CDS 40.0%
ATGACTGTTTCCAGTATGAC+TGG + chr8_1:6060919-6060938 None:intergenic 40.0%
!! TGAAAAAGAAGCGTTGTCAC+CGG - chr8_1:6061112-6061131 Msa1174850:CDS 40.0%
AATTCAAATTCGAAGGGGAG+AGG - chr8_1:6061185-6061204 Msa1174850:CDS 40.0%
TGGTGAAGCTTATGAACAAG+CGG - chr8_1:6061253-6061272 Msa1174850:CDS 40.0%
GATCGGTAGGATTTCGGTAA+CGG - chr8_1:6060485-6060504 Msa1174850:CDS 45.0%
! TAGGATTTCGGTAACGGTTG+CGG - chr8_1:6060491-6060510 Msa1174850:CDS 45.0%
CCACGTGTCGTATTCTGAAT+CGG + chr8_1:6060549-6060568 None:intergenic 45.0%
AATACGACACGTGGAAGCAA+CGG - chr8_1:6060555-6060574 Msa1174850:CDS 45.0%
!! GAAGCAGAAGCATTGGAAAG+AGG - chr8_1:6060671-6060690 Msa1174850:CDS 45.0%
!! GAAGCATTGGAAAGAGGTTG+CGG - chr8_1:6060677-6060696 Msa1174850:CDS 45.0%
GAGGTTGCGGAGATTGTTAA+TGG - chr8_1:6060690-6060709 Msa1174850:CDS 45.0%
GCGGAGATTGTTAATGGAAG+AGG - chr8_1:6060696-6060715 Msa1174850:CDS 45.0%
ATCATAAAACCGCCAAGTGC+TGG + chr8_1:6060844-6060863 None:intergenic 45.0%
!! GCACTTGGCGGTTTTATGAT+CGG - chr8_1:6060844-6060863 Msa1174850:CDS 45.0%
GCCAAGATTAGTGGTGTTTC+CGG - chr8_1:6060891-6060910 Msa1174850:CDS 45.0%
ACCGGAAACACCACTAATCT+TGG + chr8_1:6060895-6060914 None:intergenic 45.0%
GTTTCCAGTATGACTGGTAC+CGG + chr8_1:6060913-6060932 None:intergenic 45.0%
TCACAGCAGAAAGTTCCGTT+AGG - chr8_1:6060942-6060961 Msa1174850:CDS 45.0%
GTTCCGTTAGGAATTCCTGT+TGG - chr8_1:6060954-6060973 Msa1174850:CDS 45.0%
AAATTCGAAGGGGAGAGGTT+GGG - chr8_1:6061190-6061209 Msa1174850:CDS 45.0%
!! GCAGAGGATGAAGTTTGCTA+AGG - chr8_1:6061313-6061332 Msa1174850:CDS 45.0%
GATCGGTAGGATTTCGGTAA+CGG - chr8_1:6060485-6060504 Msa1174850:CDS 45.0%
! TAGGATTTCGGTAACGGTTG+CGG - chr8_1:6060491-6060510 Msa1174850:CDS 45.0%
CCACGTGTCGTATTCTGAAT+CGG + chr8_1:6060549-6060568 None:intergenic 45.0%
AATACGACACGTGGAAGCAA+CGG - chr8_1:6060555-6060574 Msa1174850:CDS 45.0%
!! GAAGCAGAAGCATTGGAAAG+AGG - chr8_1:6060671-6060690 Msa1174850:CDS 45.0%
!! GAAGCATTGGAAAGAGGTTG+CGG - chr8_1:6060677-6060696 Msa1174850:CDS 45.0%
GAGGTTGCGGAGATTGTTAA+TGG - chr8_1:6060690-6060709 Msa1174850:CDS 45.0%
GCGGAGATTGTTAATGGAAG+AGG - chr8_1:6060696-6060715 Msa1174850:CDS 45.0%
ATCATAAAACCGCCAAGTGC+TGG + chr8_1:6060844-6060863 None:intergenic 45.0%
!! GCACTTGGCGGTTTTATGAT+CGG - chr8_1:6060844-6060863 Msa1174850:CDS 45.0%
GCCAAGATTAGTGGTGTTTC+CGG - chr8_1:6060891-6060910 Msa1174850:CDS 45.0%
ACCGGAAACACCACTAATCT+TGG + chr8_1:6060895-6060914 None:intergenic 45.0%
GTTTCCAGTATGACTGGTAC+CGG + chr8_1:6060913-6060932 None:intergenic 45.0%
TCACAGCAGAAAGTTCCGTT+AGG - chr8_1:6060942-6060961 Msa1174850:CDS 45.0%
GTTCCGTTAGGAATTCCTGT+TGG - chr8_1:6060954-6060973 Msa1174850:CDS 45.0%
AAATTCGAAGGGGAGAGGTT+GGG - chr8_1:6061190-6061209 Msa1174850:CDS 45.0%
!! GCAGAGGATGAAGTTTGCTA+AGG - chr8_1:6061313-6061332 Msa1174850:CDS 45.0%
AGTGGATCGAGTTAACCGAG+TGG + chr8_1:6060413-6060432 None:intergenic 50.0%
GATCCACTCGAATCCATCTC+CGG - chr8_1:6060425-6060444 Msa1174850:CDS 50.0%
CCGATTCAGAATACGACACG+TGG - chr8_1:6060546-6060565 Msa1174850:CDS 50.0%
GAGAAAGCTAAGATCGGTGC+TGG - chr8_1:6060795-6060814 Msa1174850:CDS 50.0%
!! AAAGCTAAGATCGGTGCTGG+AGG - chr8_1:6060798-6060817 Msa1174850:CDS 50.0%
GTGTTACAACCAGCACTTGG+CGG - chr8_1:6060832-6060851 Msa1174850:CDS 50.0%
ACACCACTAATCTTGGCAGC+TGG + chr8_1:6060888-6060907 None:intergenic 50.0%
GTTTCCGGTACCAGTCATAC+TGG - chr8_1:6060906-6060925 Msa1174850:CDS 50.0%
GAATTCAGCTCAGAAACGCG+TGG + chr8_1:6061077-6061096 None:intergenic 50.0%
! GGTAAACTGTCGCTTGACAC+CGG + chr8_1:6061134-6061153 None:intergenic 50.0%
AAGCGACAGTTTACCACCAC+CGG - chr8_1:6061139-6061158 Msa1174850:CDS 50.0%
CAAATTCGAAGGGGAGAGGT+TGG - chr8_1:6061189-6061208 Msa1174850:CDS 50.0%
AATTCGAAGGGGAGAGGTTG+GGG - chr8_1:6061191-6061210 Msa1174850:CDS 50.0%
AGTGGATCGAGTTAACCGAG+TGG + chr8_1:6060413-6060432 None:intergenic 50.0%
GATCCACTCGAATCCATCTC+CGG - chr8_1:6060425-6060444 Msa1174850:CDS 50.0%
CCGATTCAGAATACGACACG+TGG - chr8_1:6060546-6060565 Msa1174850:CDS 50.0%
GAGAAAGCTAAGATCGGTGC+TGG - chr8_1:6060795-6060814 Msa1174850:CDS 50.0%
!! AAAGCTAAGATCGGTGCTGG+AGG - chr8_1:6060798-6060817 Msa1174850:CDS 50.0%
GTGTTACAACCAGCACTTGG+CGG - chr8_1:6060832-6060851 Msa1174850:CDS 50.0%
ACACCACTAATCTTGGCAGC+TGG + chr8_1:6060888-6060907 None:intergenic 50.0%
GTTTCCGGTACCAGTCATAC+TGG - chr8_1:6060906-6060925 Msa1174850:CDS 50.0%
GAATTCAGCTCAGAAACGCG+TGG + chr8_1:6061077-6061096 None:intergenic 50.0%
! GGTAAACTGTCGCTTGACAC+CGG + chr8_1:6061134-6061153 None:intergenic 50.0%
AAGCGACAGTTTACCACCAC+CGG - chr8_1:6061139-6061158 Msa1174850:CDS 50.0%
CAAATTCGAAGGGGAGAGGT+TGG - chr8_1:6061189-6061208 Msa1174850:CDS 50.0%
AATTCGAAGGGGAGAGGTTG+GGG - chr8_1:6061191-6061210 Msa1174850:CDS 50.0%
TGACGACGACGAGATCCACT+CGG - chr8_1:6060395-6060414 Msa1174850:CDS 55.0%
GAAATCCTACCGATCGCTCC+CGG + chr8_1:6060480-6060499 None:intergenic 55.0%
GGGAGCGATCGGTAGGATTT+CGG - chr8_1:6060479-6060498 Msa1174850:CDS 55.0%
AATGCATAGCTGTTCGCCGC+CGG + chr8_1:6060519-6060538 None:intergenic 55.0%
TTGTTGGAGCGAAGCAGCGA+CGG - chr8_1:6060593-6060612 Msa1174850:CDS 55.0%
!! GGCGGTGTTGATTGAAGCGT+GGG - chr8_1:6060614-6060633 Msa1174850:CDS 55.0%
!! GCGGTGTTGATTGAAGCGTG+GGG - chr8_1:6060615-6060634 Msa1174850:CDS 55.0%
TGATTGAAGCGTGGGGAGAG+AGG - chr8_1:6060622-6060641 Msa1174850:CDS 55.0%
!! AGCGTGGGGAGAGAGGTATT+TGG - chr8_1:6060629-6060648 Msa1174850:CDS 55.0%
!! AGTGCTGGTTGTAACACCGC+CGG + chr8_1:6060829-6060848 None:intergenic 55.0%
!! GCGGTGTTACAACCAGCACT+TGG - chr8_1:6060829-6060848 Msa1174850:CDS 55.0%
GGTCCAGCTGCCAAGATTAG+TGG - chr8_1:6060882-6060901 Msa1174850:CDS 55.0%
ACAGTTTACCACCACCGGAG+AGG - chr8_1:6061144-6061163 Msa1174850:CDS 55.0%
ACCTTCGCTCTCTTCCTCTC+CGG + chr8_1:6061161-6061180 None:intergenic 55.0%
! TGCGGTGAGGGAATTGACTC+AGG - chr8_1:6061217-6061236 Msa1174850:CDS 55.0%
TGGTGGAGATGGAGAAGCAG+AGG - chr8_1:6061297-6061316 Msa1174850:CDS 55.0%
TGACGACGACGAGATCCACT+CGG - chr8_1:6060395-6060414 Msa1174850:CDS 55.0%
GAAATCCTACCGATCGCTCC+CGG + chr8_1:6060480-6060499 None:intergenic 55.0%
GGGAGCGATCGGTAGGATTT+CGG - chr8_1:6060479-6060498 Msa1174850:CDS 55.0%
AATGCATAGCTGTTCGCCGC+CGG + chr8_1:6060519-6060538 None:intergenic 55.0%
TTGTTGGAGCGAAGCAGCGA+CGG - chr8_1:6060593-6060612 Msa1174850:CDS 55.0%
!! GGCGGTGTTGATTGAAGCGT+GGG - chr8_1:6060614-6060633 Msa1174850:CDS 55.0%
!! GCGGTGTTGATTGAAGCGTG+GGG - chr8_1:6060615-6060634 Msa1174850:CDS 55.0%
TGATTGAAGCGTGGGGAGAG+AGG - chr8_1:6060622-6060641 Msa1174850:CDS 55.0%
!! AGCGTGGGGAGAGAGGTATT+TGG - chr8_1:6060629-6060648 Msa1174850:CDS 55.0%
!! AGTGCTGGTTGTAACACCGC+CGG + chr8_1:6060829-6060848 None:intergenic 55.0%
!! GCGGTGTTACAACCAGCACT+TGG - chr8_1:6060829-6060848 Msa1174850:CDS 55.0%
GGTCCAGCTGCCAAGATTAG+TGG - chr8_1:6060882-6060901 Msa1174850:CDS 55.0%
ACAGTTTACCACCACCGGAG+AGG - chr8_1:6061144-6061163 Msa1174850:CDS 55.0%
ACCTTCGCTCTCTTCCTCTC+CGG + chr8_1:6061161-6061180 None:intergenic 55.0%
! TGCGGTGAGGGAATTGACTC+AGG - chr8_1:6061217-6061236 Msa1174850:CDS 55.0%
TGGTGGAGATGGAGAAGCAG+AGG - chr8_1:6061297-6061316 Msa1174850:CDS 55.0%
! TCGCCGGAGATGGATTCGAG+TGG + chr8_1:6060431-6060450 None:intergenic 60.0%
TCGAATCCATCTCCGGCGAG+TGG - chr8_1:6060432-6060451 Msa1174850:CDS 60.0%
GGAGATGGAGAACCACTCGC+CGG + chr8_1:6060447-6060466 None:intergenic 60.0%
GGCGAGTGGTTCTCCATCTC+CGG - chr8_1:6060446-6060465 Msa1174850:CDS 60.0%
!! TCCATCTCCGGTGTCGTCTC+CGG - chr8_1:6060458-6060477 Msa1174850:CDS 60.0%
! TTCGGTAACGGTTGCGGCAC+CGG - chr8_1:6060497-6060516 Msa1174850:CDS 60.0%
ACGACACGTGGAAGCAACGG+TGG - chr8_1:6060558-6060577 Msa1174850:CDS 60.0%
ACACGTGGAAGCAACGGTGG+AGG - chr8_1:6060561-6060580 Msa1174850:CDS 60.0%
CACGTGGAAGCAACGGTGGA+GGG - chr8_1:6060562-6060581 Msa1174850:CDS 60.0%
TGGAAGCAACGGTGGAGGGA+GGG - chr8_1:6060566-6060585 Msa1174850:CDS 60.0%
GTGGAGGGAGGGAGGATTGT+TGG - chr8_1:6060577-6060596 Msa1174850:CDS 60.0%
!! CGGCGGTGTTGATTGAAGCG+TGG - chr8_1:6060613-6060632 Msa1174850:CDS 60.0%
!! GCTAAGATCGGTGCTGGAGG+TGG - chr8_1:6060801-6060820 Msa1174850:CDS 60.0%
! CCAGAGGCGCGAATACCAAC+AGG + chr8_1:6060972-6060991 None:intergenic 60.0%
CCTGTTGGTATTCGCGCCTC+TGG - chr8_1:6060969-6060988 Msa1174850:CDS 60.0%
!! ATTCGCGCCTCTGGAGCTAG+AGG - chr8_1:6060978-6060997 Msa1174850:CDS 60.0%
! ATTCGCGCCTCTAGCTCCAG+AGG + chr8_1:6060988-6061007 None:intergenic 60.0%
TTCGCTCTCTTCCTCTCCGG+TGG + chr8_1:6061158-6061177 None:intergenic 60.0%
ACCGGAGAGGAAGAGAGCGA+AGG - chr8_1:6061157-6061176 Msa1174850:CDS 60.0%
! AGGTTGGGGAAGTGCGGTGA+GGG - chr8_1:6061205-6061224 Msa1174850:CDS 60.0%
GGAGACGTCGAAGTTGCAGC+AGG - chr8_1:6061274-6061293 Msa1174850:CDS 60.0%
GACGTCGAAGTTGCAGCAGG+TGG - chr8_1:6061277-6061296 Msa1174850:CDS 60.0%
GTCGAAGTTGCAGCAGGTGG+TGG - chr8_1:6061280-6061299 Msa1174850:CDS 60.0%
!! GTTGCAGCAGGTGGTGGAGA+TGG - chr8_1:6061286-6061305 Msa1174850:CDS 60.0%
! TCGCCGGAGATGGATTCGAG+TGG + chr8_1:6060431-6060450 None:intergenic 60.0%
TCGAATCCATCTCCGGCGAG+TGG - chr8_1:6060432-6060451 Msa1174850:CDS 60.0%
GGAGATGGAGAACCACTCGC+CGG + chr8_1:6060447-6060466 None:intergenic 60.0%
GGCGAGTGGTTCTCCATCTC+CGG - chr8_1:6060446-6060465 Msa1174850:CDS 60.0%
!! TCCATCTCCGGTGTCGTCTC+CGG - chr8_1:6060458-6060477 Msa1174850:CDS 60.0%
! TTCGGTAACGGTTGCGGCAC+CGG - chr8_1:6060497-6060516 Msa1174850:CDS 60.0%
ACGACACGTGGAAGCAACGG+TGG - chr8_1:6060558-6060577 Msa1174850:CDS 60.0%
ACACGTGGAAGCAACGGTGG+AGG - chr8_1:6060561-6060580 Msa1174850:CDS 60.0%
CACGTGGAAGCAACGGTGGA+GGG - chr8_1:6060562-6060581 Msa1174850:CDS 60.0%
TGGAAGCAACGGTGGAGGGA+GGG - chr8_1:6060566-6060585 Msa1174850:CDS 60.0%
GTGGAGGGAGGGAGGATTGT+TGG - chr8_1:6060577-6060596 Msa1174850:CDS 60.0%
!! CGGCGGTGTTGATTGAAGCG+TGG - chr8_1:6060613-6060632 Msa1174850:CDS 60.0%
!! GCTAAGATCGGTGCTGGAGG+TGG - chr8_1:6060801-6060820 Msa1174850:CDS 60.0%
! CCAGAGGCGCGAATACCAAC+AGG + chr8_1:6060972-6060991 None:intergenic 60.0%
CCTGTTGGTATTCGCGCCTC+TGG - chr8_1:6060969-6060988 Msa1174850:CDS 60.0%
!! ATTCGCGCCTCTGGAGCTAG+AGG - chr8_1:6060978-6060997 Msa1174850:CDS 60.0%
! ATTCGCGCCTCTAGCTCCAG+AGG + chr8_1:6060988-6061007 None:intergenic 60.0%
TTCGCTCTCTTCCTCTCCGG+TGG + chr8_1:6061158-6061177 None:intergenic 60.0%
ACCGGAGAGGAAGAGAGCGA+AGG - chr8_1:6061157-6061176 Msa1174850:CDS 60.0%
! AGGTTGGGGAAGTGCGGTGA+GGG - chr8_1:6061205-6061224 Msa1174850:CDS 60.0%
GGAGACGTCGAAGTTGCAGC+AGG - chr8_1:6061274-6061293 Msa1174850:CDS 60.0%
GACGTCGAAGTTGCAGCAGG+TGG - chr8_1:6061277-6061296 Msa1174850:CDS 60.0%
GTCGAAGTTGCAGCAGGTGG+TGG - chr8_1:6061280-6061299 Msa1174850:CDS 60.0%
!! GTTGCAGCAGGTGGTGGAGA+TGG - chr8_1:6061286-6061305 Msa1174850:CDS 60.0%
GGAGAACCACTCGCCGGAGA+TGG + chr8_1:6060441-6060460 None:intergenic 65.0%
!! CCATCTCCGGTGTCGTCTCC+GGG - chr8_1:6060459-6060478 Msa1174850:CDS 65.0%
ATCGCTCCCGGAGACGACAC+CGG + chr8_1:6060468-6060487 None:intergenic 65.0%
GTGTCGTCTCCGGGAGCGAT+CGG - chr8_1:6060468-6060487 Msa1174850:CDS 65.0%
GTGGAAGCAACGGTGGAGGG+AGG - chr8_1:6060565-6060584 Msa1174850:CDS 65.0%
AAGCAACGGTGGAGGGAGGG+AGG - chr8_1:6060569-6060588 Msa1174850:CDS 65.0%
TTGGAGCGAAGCAGCGACGG+CGG - chr8_1:6060596-6060615 Msa1174850:CDS 65.0%
!! ATCGGTGCTGGAGGTGGCTC+CGG - chr8_1:6060807-6060826 Msa1174850:CDS 65.0%
GCTCTCTTCCTCTCCGGTGG+TGG + chr8_1:6061155-6061174 None:intergenic 65.0%
GGGGAGAGGTTGGGGAAGTG+CGG - chr8_1:6061199-6061218 Msa1174850:CDS 65.0%
! GAGGTTGGGGAAGTGCGGTG+AGG - chr8_1:6061204-6061223 Msa1174850:CDS 65.0%
GGAGAACCACTCGCCGGAGA+TGG + chr8_1:6060441-6060460 None:intergenic 65.0%
!! CCATCTCCGGTGTCGTCTCC+GGG - chr8_1:6060459-6060478 Msa1174850:CDS 65.0%
ATCGCTCCCGGAGACGACAC+CGG + chr8_1:6060468-6060487 None:intergenic 65.0%
GTGTCGTCTCCGGGAGCGAT+CGG - chr8_1:6060468-6060487 Msa1174850:CDS 65.0%
GTGGAAGCAACGGTGGAGGG+AGG - chr8_1:6060565-6060584 Msa1174850:CDS 65.0%
AAGCAACGGTGGAGGGAGGG+AGG - chr8_1:6060569-6060588 Msa1174850:CDS 65.0%
TTGGAGCGAAGCAGCGACGG+CGG - chr8_1:6060596-6060615 Msa1174850:CDS 65.0%
!! ATCGGTGCTGGAGGTGGCTC+CGG - chr8_1:6060807-6060826 Msa1174850:CDS 65.0%
GCTCTCTTCCTCTCCGGTGG+TGG + chr8_1:6061155-6061174 None:intergenic 65.0%
GGGGAGAGGTTGGGGAAGTG+CGG - chr8_1:6061199-6061218 Msa1174850:CDS 65.0%
! GAGGTTGGGGAAGTGCGGTG+AGG - chr8_1:6061204-6061223 Msa1174850:CDS 65.0%
CCCGGAGACGACACCGGAGA+TGG + chr8_1:6060462-6060481 None:intergenic 70.0%
CGTCTCCGGGAGCGATCGGT+AGG - chr8_1:6060472-6060491 Msa1174850:CDS 70.0%
! GGTAACGGTTGCGGCACCGG+CGG - chr8_1:6060500-6060519 Msa1174850:CDS 70.0%
CCCGGAGACGACACCGGAGA+TGG + chr8_1:6060462-6060481 None:intergenic 70.0%
CGTCTCCGGGAGCGATCGGT+AGG - chr8_1:6060472-6060491 Msa1174850:CDS 70.0%
! GGTAACGGTTGCGGCACCGG+CGG - chr8_1:6060500-6060519 Msa1174850:CDS 70.0%
! GGTGCTGGAGGTGGCTCCGG+CGG - chr8_1:6060810-6060829 Msa1174850:CDS 75.0%
! GGTGCTGGAGGTGGCTCCGG+CGG - chr8_1:6060810-6060829 Msa1174850:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 6060390 6061511 6060390 ID=Msa1174850;Name=Msa1174850
chr8_1 mRNA 6060390 6061511 6060390 ID=Msa1174850-mRNA-1;Parent=Msa1174850;Name=Msa1174850-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|373
chr8_1 exon 6060390 6061511 6060390 ID=Msa1174850-mRNA-1:exon:2087;Parent=Msa1174850-mRNA-1
chr8_1 CDS 6060390 6061511 6060390 ID=Msa1174850-mRNA-1:cds;Parent=Msa1174850-mRNA-1
Gene Sequence

>Msa1174850

ATGGATGACGACGACGAGATCCACTCGGTTAACTCGATCCACTCGAATCCATCTCCGGCGAGTGGTTCTCCATCTCCGGTGTCGTCTCCGGGAGCGATCGGTAGGATTTCGGTAACGGTTGCGGCACCGGCGGCGAACAGCTATGCATTAGCGCTTCCGATTCAGAATACGACACGTGGAAGCAACGGTGGAGGGAGGGAGGATTGTTGGAGCGAAGCAGCGACGGCGGTGTTGATTGAAGCGTGGGGAGAGAGGTATTTGGAATTGAGCAGAGGGAATTTGAAGCAGAAGCATTGGAAAGAGGTTGCGGAGATTGTTAATGGAAGAGGTGATTATTTGAAAGCTCCGAAAACTGATATTCAGTGTAAGAATCGGATTGATACGGTTAAGAAGAAGTATAAATCGGAGAAAGCTAAGATCGGTGCTGGAGGTGGCTCCGGCGGTGTTACAACCAGCACTTGGCGGTTTTATGATCGGTTAGATCAGTTAATTGGTCCAGCTGCCAAGATTAGTGGTGTTTCCGGTACCAGTCATACTGGAAACAGTCATTTGTCACAGCAGAAAGTTCCGTTAGGAATTCCTGTTGGTATTCGCGCCTCTGGAGCTAGAGGCGCGAATCAAGCTAATTCTCAGAAGAAAGATATTCAACAAGCTCAGTTGAATTATCAGAAGATTCAGCTCAGACCACGCGTTTCTGAGCTGAATTCTTCTGATAATTCATCTGAAAAAGAAGCGTTGTCACCGGTGTCAAGCGACAGTTTACCACCACCGGAGAGGAAGAGAGCGAAGGTGATGAATTCAAATTCGAAGGGGAGAGGTTGGGGAAGTGCGGTGAGGGAATTGACTCAGGCAATTGTGAAATTTGGTGAAGCTTATGAACAAGCGGAGACGTCGAAGTTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTTGCTAAGGATTTGGAGTTGCAGAGAATGCAGTTTTTCATGAAAACTCAGGTAGAGATTTCACAGTTGAAACTTGGAAGAAAAAGTGTTAATGTTAATGGTAACACAAGTAATCATCAAAACAACAACAATGTAAGCAGCAACAACAACAATAGCAACCATAACAATAACAGTGACAGTGAGTGA

Protein sequence

>Msa1174850

MDDDDEIHSVNSIHSNPSPASGSPSPVSSPGAIGRISVTVAAPAANSYALALPIQNTTRGSNGGGREDCWSEAATAVLIEAWGERYLELSRGNLKQKHWKEVAEIVNGRGDYLKAPKTDIQCKNRIDTVKKKYKSEKAKIGAGGGSGGVTTSTWRFYDRLDQLIGPAAKISGVSGTSHTGNSHLSQQKVPLGIPVGIRASGARGANQANSQKKDIQQAQLNYQKIQLRPRVSELNSSDNSSEKEALSPVSSDSLPPPERKRAKVMNSNSKGRGWGSAVRELTQAIVKFGEAYEQAETSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQVEISQLKLGRKSVNVNGNTSNHQNNNNVSSNNNNSNHNNNSDSE*