AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1357890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357890 MtrunA17_Chr5g0397781 81.818 187 31 2 3 187 24 209 9.48e-101 289
Msa1357890 MtrunA17_Chr8g0386521 48.958 192 93 1 1 187 9 200 9.81e-55 172
Msa1357890 MtrunA17_Chr1g0203401 57.937 126 53 0 60 185 84 209 1.29e-44 147
Msa1357890 MtrunA17_Chr8g0349271 59.524 126 51 0 60 185 75 200 8.09e-44 144
Msa1357890 MtrunA17_Chr7g0247121 50.769 65 32 0 121 185 34 98 7.43e-16 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357890 AT5G23750.2 60.317 126 50 0 60 185 76 201 3.38e-48 156
Msa1357890 AT5G23750.3 60.317 126 50 0 60 185 104 229 3.69e-48 157
Msa1357890 AT5G23750.1 60.317 126 50 0 60 185 77 202 4.98e-48 155
Msa1357890 AT3G48940.1 57.937 126 53 0 60 185 50 175 3.12e-44 145
Msa1357890 AT3G61260.1 56.154 130 57 0 56 185 83 212 4.00e-43 143
Msa1357890 AT2G45820.1 50.549 182 78 4 7 185 18 190 2.95e-40 135
Msa1357890 AT1G63295.1 43.243 111 63 0 61 171 24 134 3.71e-21 85.5
Msa1357890 AT1G63295.2 43.243 111 63 0 61 171 64 174 7.32e-21 85.5
Msa1357890 AT4G00670.1 37.963 108 66 1 79 185 16 123 1.26e-17 75.5

Find 42 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAATCTTCTGTTGGATTA+TGG 0.203365 tig0016220:-9282 Msa1357890:CDS
TTCTCCTTGGCTTAGGCCCT+GGG 0.256568 tig0016220:-10108 Msa1357890:CDS
GTTCTCCTTGGCTTAGGCCC+TGG 0.257787 tig0016220:-10109 Msa1357890:CDS
AAGCATGCAAACAATTTCTT+TGG 0.279239 tig0016220:+8722 None:intergenic
CATGCTGATAATAAGGAAAC+TGG 0.290185 tig0016220:-9625 Msa1357890:CDS
TGGGGACCATGATGATAAAA+AGG 0.310600 tig0016220:-9605 Msa1357890:CDS
GCAATCTTCTGTTGGATTAT+GGG 0.326593 tig0016220:-9281 Msa1357890:CDS
AAAAGACAAAGGCAGAAAAT+AGG 0.344478 tig0016220:-9409 Msa1357890:intron
AGATGATCATGCTGATAATA+AGG 0.352782 tig0016220:-9632 Msa1357890:CDS
CCAGGGGTTCTCCTTGGCTT+AGG 0.369590 tig0016220:-10115 Msa1357890:CDS
TAGGCCCTGGGAAATTTGCC+AGG 0.386597 tig0016220:-10096 Msa1357890:CDS
TCACCCCTGTCAAATTTGCC+AGG 0.399983 tig0016220:-10133 Msa1357890:CDS
AATTTGCCAGGGGTTCTCCT+TGG 0.455214 tig0016220:-10121 Msa1357890:CDS
CATGCCCCTGTCAAAATCCT+TGG 0.463620 tig0016220:-10068 Msa1357890:intron
AAACCCCTGGCAAATTTCCC+AGG 0.473618 tig0016220:+10091 None:intergenic
TACAAGAAGCAATCTTCTGT+TGG 0.476983 tig0016220:-9289 Msa1357890:CDS
AAGCAAGAAATCATCTATAG+AGG 0.477360 tig0016220:-9254 Msa1357890:CDS
AATTGTAGCAGAGAAAAGAT+TGG 0.480532 tig0016220:-9459 Msa1357890:CDS
GAACCCCTGGCAAATTTGAC+AGG 0.487889 tig0016220:+10128 None:intergenic
CACCCCTGTCAAATTTGCCA+GGG 0.488641 tig0016220:-10132 Msa1357890:CDS
ATTGGCTTTAATTAAAGCAT+GGG 0.513985 tig0016220:-9441 Msa1357890:CDS
GGGGTCATGGCAATTTGTGA+CGG 0.520511 tig0016220:-10158 None:intergenic
GATTGGCTTTAATTAAAGCA+TGG 0.523135 tig0016220:-9442 Msa1357890:CDS
TGACAGGGGCATGAAACCCC+TGG 0.531695 tig0016220:+10078 None:intergenic
CCTAAGCCAAGGAGAACCCC+TGG 0.535373 tig0016220:+10115 None:intergenic
AGGCCCTGGGAAATTTGCCA+GGG 0.546307 tig0016220:-10095 Msa1357890:CDS
GGCACAACTCAAGAAATTTG+AGG 0.555597 tig0016220:-9233 Msa1357890:intron
GGGTCATGGCAATTTGTGAC+GGG 0.559988 tig0016220:-10157 None:intergenic
ATGCTGATAATAAGGAAACT+GGG 0.564807 tig0016220:-9624 Msa1357890:CDS
GGAAGAATGTCTGGAGCTAG+AGG 0.585162 tig0016220:-8780 Msa1357890:CDS
ACCCCTGTCAAATTTGCCAG+GGG 0.588274 tig0016220:-10131 Msa1357890:CDS
ATTTCTTTGGTGCAACTCCA+CGG 0.591194 tig0016220:+8735 None:intergenic
GGCCCTGGGAAATTTGCCAG+GGG 0.594709 tig0016220:-10094 Msa1357890:CDS
GCTGCAAAGTTTCGTAGCCG+TGG 0.595886 tig0016220:-8752 Msa1357890:CDS
ATCTTCTGTTGGATTATGGG+AGG 0.596122 tig0016220:-9278 Msa1357890:CDS
ATTTCCCAGGGCCTAAGCCA+AGG 0.605364 tig0016220:+10104 None:intergenic
TGCTGATAATAAGGAAACTG+GGG 0.627976 tig0016220:-9623 Msa1357890:CDS
AACCCCTGGCAAATTTCCCA+GGG 0.643382 tig0016220:+10092 None:intergenic
AACCCCTGGCAAATTTGACA+GGG 0.645050 tig0016220:+10129 None:intergenic
GGAAGAAAGTGAAAAGACAA+AGG 0.645779 tig0016220:-9420 Msa1357890:CDS
GCTAAGGGCTCAACTGACAG+AGG 0.669431 tig0016220:-9580 Msa1357890:intron
ACCCCTGGCAAATTTGACAG+GGG 0.717183 tig0016220:+10130 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATATGAAAATTTTTTTG+AGG - tig0016220:9051-9070 Msa1357890:intron 10.0%
!! TGATTATTAGTTATTATTTA+TGG - tig0016220:9654-9673 Msa1357890:intron 10.0%
!!! ACAAAATTGTTTTAAATAAT+AGG - tig0016220:9952-9971 Msa1357890:intron 10.0%
!!! TTTTAAATAATAGGAAAATT+TGG - tig0016220:9961-9980 Msa1357890:intron 10.0%
!!! TTAATATGAAAATTTTTTTG+AGG - tig0016220:9051-9070 Msa1357890:intron 10.0%
!! TGATTATTAGTTATTATTTA+TGG - tig0016220:9654-9673 Msa1357890:intron 10.0%
!!! ACAAAATTGTTTTAAATAAT+AGG - tig0016220:9952-9971 Msa1357890:intron 10.0%
!!! TTTTAAATAATAGGAAAATT+TGG - tig0016220:9961-9980 Msa1357890:intron 10.0%
!! TAGTCATAAATTTATAAGAT+AGG + tig0016220:9487-9506 None:intergenic 15.0%
!! TAGTCATAAATTTATAAGAT+AGG + tig0016220:9487-9506 None:intergenic 15.0%
!! AATTTGCCTTCAAATATATT+AGG + tig0016220:8894-8913 None:intergenic 20.0%
!!! CTTTTTTGTTTTGTTTTGTT+TGG - tig0016220:9684-9703 Msa1357890:intron 20.0%
!!! ATTTTGTAAGTTACAAATGA+GGG + tig0016220:9939-9958 None:intergenic 20.0%
!!! AATTTTGTAAGTTACAAATG+AGG + tig0016220:9940-9959 None:intergenic 20.0%
!! AATTTGCCTTCAAATATATT+AGG + tig0016220:8894-8913 None:intergenic 20.0%
!!! CTTTTTTGTTTTGTTTTGTT+TGG - tig0016220:9684-9703 Msa1357890:intron 20.0%
!!! ATTTTGTAAGTTACAAATGA+GGG + tig0016220:9939-9958 None:intergenic 20.0%
!!! AATTTTGTAAGTTACAAATG+AGG + tig0016220:9940-9959 None:intergenic 20.0%
!!! CCTCATATTTTATTTGTTCT+AGG + tig0016220:8972-8991 None:intergenic 25.0%
! CCTAGAACAAATAAAATATG+AGG - tig0016220:8969-8988 Msa1357890:intron 25.0%
! CTCTGTATGAAAAATATGAT+GGG + tig0016220:9201-9220 None:intergenic 25.0%
! TCTCTGTATGAAAAATATGA+TGG + tig0016220:9202-9221 None:intergenic 25.0%
!!! ATTGGCTTTAATTAAAGCAT+GGG - tig0016220:9423-9442 Msa1357890:CDS 25.0%
!!! GTTTTGTTTGGTTGTAAATT+AGG - tig0016220:9696-9715 Msa1357890:intron 25.0%
! TCTAGTATAACTAAGGTTTA+GGG + tig0016220:9835-9854 None:intergenic 25.0%
! TTCTAGTATAACTAAGGTTT+AGG + tig0016220:9836-9855 None:intergenic 25.0%
! AATAGTTGAAGCTCAAAAAA+GGG - tig0016220:10063-10082 Msa1357890:intron 25.0%
!!! CCTCATATTTTATTTGTTCT+AGG + tig0016220:8972-8991 None:intergenic 25.0%
! CCTAGAACAAATAAAATATG+AGG - tig0016220:8969-8988 Msa1357890:intron 25.0%
! CTCTGTATGAAAAATATGAT+GGG + tig0016220:9201-9220 None:intergenic 25.0%
! TCTCTGTATGAAAAATATGA+TGG + tig0016220:9202-9221 None:intergenic 25.0%
!!! ATTGGCTTTAATTAAAGCAT+GGG - tig0016220:9423-9442 Msa1357890:CDS 25.0%
!!! GTTTTGTTTGGTTGTAAATT+AGG - tig0016220:9696-9715 Msa1357890:intron 25.0%
! TCTAGTATAACTAAGGTTTA+GGG + tig0016220:9835-9854 None:intergenic 25.0%
! TTCTAGTATAACTAAGGTTT+AGG + tig0016220:9836-9855 None:intergenic 25.0%
! AATAGTTGAAGCTCAAAAAA+GGG - tig0016220:10063-10082 Msa1357890:intron 25.0%
AATCAGCATATTTCTTGTAG+TGG - tig0016220:8821-8840 Msa1357890:CDS 30.0%
CTATCTGGTCTAAATTGTTA+AGG - tig0016220:8852-8871 Msa1357890:CDS 30.0%
GATCGACCTAATATATTTGA+AGG - tig0016220:8885-8904 Msa1357890:CDS 30.0%
CTAATCGTAAATGTTTCTCT+AGG + tig0016220:9015-9034 None:intergenic 30.0%
AGATGATCATGCTGATAATA+AGG - tig0016220:9232-9251 Msa1357890:intron 30.0%
ATGCTGATAATAAGGAAACT+GGG - tig0016220:9240-9259 Msa1357890:CDS 30.0%
! TAGCATCCTTTTTATCATCA+TGG + tig0016220:9268-9287 None:intergenic 30.0%
TGATGATAAAAAGGATGCTA+AGG - tig0016220:9268-9287 Msa1357890:CDS 30.0%
GATGATAAAAAGGATGCTAA+GGG - tig0016220:9269-9288 Msa1357890:CDS 30.0%
! ATTTTGTTGCATTAGATGCT+GGG - tig0016220:9374-9393 Msa1357890:intron 30.0%
AATTGTAGCAGAGAAAAGAT+TGG - tig0016220:9405-9424 Msa1357890:intron 30.0%
!! GATTGGCTTTAATTAAAGCA+TGG - tig0016220:9422-9441 Msa1357890:CDS 30.0%
AAAAGACAAAGGCAGAAAAT+AGG - tig0016220:9455-9474 Msa1357890:CDS 30.0%
AAGCAAGAAATCATCTATAG+AGG - tig0016220:9610-9629 Msa1357890:CDS 30.0%
GATCTCTTCTAGTATAACTA+AGG + tig0016220:9842-9861 None:intergenic 30.0%
GATGAATAAAGTGAGATTGT+GGG + tig0016220:9880-9899 None:intergenic 30.0%
TGATGAATAAAGTGAGATTG+TGG + tig0016220:9881-9900 None:intergenic 30.0%
CAATAGTTGAAGCTCAAAAA+AGG - tig0016220:10062-10081 Msa1357890:intron 30.0%
AAGCATGCAAACAATTTCTT+TGG + tig0016220:10145-10164 None:intergenic 30.0%
AATCAGCATATTTCTTGTAG+TGG - tig0016220:8821-8840 Msa1357890:CDS 30.0%
CTATCTGGTCTAAATTGTTA+AGG - tig0016220:8852-8871 Msa1357890:CDS 30.0%
GATCGACCTAATATATTTGA+AGG - tig0016220:8885-8904 Msa1357890:CDS 30.0%
CTAATCGTAAATGTTTCTCT+AGG + tig0016220:9015-9034 None:intergenic 30.0%
AGATGATCATGCTGATAATA+AGG - tig0016220:9232-9251 Msa1357890:intron 30.0%
ATGCTGATAATAAGGAAACT+GGG - tig0016220:9240-9259 Msa1357890:CDS 30.0%
! TAGCATCCTTTTTATCATCA+TGG + tig0016220:9268-9287 None:intergenic 30.0%
TGATGATAAAAAGGATGCTA+AGG - tig0016220:9268-9287 Msa1357890:CDS 30.0%
GATGATAAAAAGGATGCTAA+GGG - tig0016220:9269-9288 Msa1357890:CDS 30.0%
! ATTTTGTTGCATTAGATGCT+GGG - tig0016220:9374-9393 Msa1357890:intron 30.0%
AATTGTAGCAGAGAAAAGAT+TGG - tig0016220:9405-9424 Msa1357890:intron 30.0%
!! GATTGGCTTTAATTAAAGCA+TGG - tig0016220:9422-9441 Msa1357890:CDS 30.0%
AAAAGACAAAGGCAGAAAAT+AGG - tig0016220:9455-9474 Msa1357890:CDS 30.0%
AAGCAAGAAATCATCTATAG+AGG - tig0016220:9610-9629 Msa1357890:CDS 30.0%
GATCTCTTCTAGTATAACTA+AGG + tig0016220:9842-9861 None:intergenic 30.0%
GATGAATAAAGTGAGATTGT+GGG + tig0016220:9880-9899 None:intergenic 30.0%
TGATGAATAAAGTGAGATTG+TGG + tig0016220:9881-9900 None:intergenic 30.0%
CAATAGTTGAAGCTCAAAAA+AGG - tig0016220:10062-10081 Msa1357890:intron 30.0%
AAGCATGCAAACAATTTCTT+TGG + tig0016220:10145-10164 None:intergenic 30.0%
!! ATTTGCCAAGGATTTTGACA+GGG + tig0016220:8804-8823 None:intergenic 35.0%
!! AGAAATATGCTGATTTGCCA+AGG + tig0016220:8816-8835 None:intergenic 35.0%
AAATTGTTAAGGTCATCGTC+AGG - tig0016220:8863-8882 Msa1357890:CDS 35.0%
!! GCTTTAGGCTTCGAAATTTT+TGG + tig0016220:9088-9107 None:intergenic 35.0%
CATGCTGATAATAAGGAAAC+TGG - tig0016220:9239-9258 Msa1357890:CDS 35.0%
TGCTGATAATAAGGAAACTG+GGG - tig0016220:9241-9260 Msa1357890:CDS 35.0%
! CATTTTGTTGCATTAGATGC+TGG - tig0016220:9373-9392 Msa1357890:intron 35.0%
GGAAGAAAGTGAAAAGACAA+AGG - tig0016220:9444-9463 Msa1357890:CDS 35.0%
GAGCTTGATGAAAGATGAAA+TGG - tig0016220:9540-9559 Msa1357890:intron 35.0%
AAAGATGAAATGGTCACACA+GGG - tig0016220:9550-9569 Msa1357890:intron 35.0%
TACAAGAAGCAATCTTCTGT+TGG - tig0016220:9575-9594 Msa1357890:intron 35.0%
AGCAATCTTCTGTTGGATTA+TGG - tig0016220:9582-9601 Msa1357890:CDS 35.0%
GCAATCTTCTGTTGGATTAT+GGG - tig0016220:9583-9602 Msa1357890:CDS 35.0%
TCAAAAAAGGGAAGAATGTC+TGG - tig0016220:10075-10094 Msa1357890:CDS 35.0%
!! ATTTGCCAAGGATTTTGACA+GGG + tig0016220:8804-8823 None:intergenic 35.0%
!! AGAAATATGCTGATTTGCCA+AGG + tig0016220:8816-8835 None:intergenic 35.0%
AAATTGTTAAGGTCATCGTC+AGG - tig0016220:8863-8882 Msa1357890:CDS 35.0%
!! GCTTTAGGCTTCGAAATTTT+TGG + tig0016220:9088-9107 None:intergenic 35.0%
CATGCTGATAATAAGGAAAC+TGG - tig0016220:9239-9258 Msa1357890:CDS 35.0%
TGCTGATAATAAGGAAACTG+GGG - tig0016220:9241-9260 Msa1357890:CDS 35.0%
! CATTTTGTTGCATTAGATGC+TGG - tig0016220:9373-9392 Msa1357890:intron 35.0%
GGAAGAAAGTGAAAAGACAA+AGG - tig0016220:9444-9463 Msa1357890:CDS 35.0%
GAGCTTGATGAAAGATGAAA+TGG - tig0016220:9540-9559 Msa1357890:intron 35.0%
AAAGATGAAATGGTCACACA+GGG - tig0016220:9550-9569 Msa1357890:intron 35.0%
TACAAGAAGCAATCTTCTGT+TGG - tig0016220:9575-9594 Msa1357890:intron 35.0%
AGCAATCTTCTGTTGGATTA+TGG - tig0016220:9582-9601 Msa1357890:CDS 35.0%
GCAATCTTCTGTTGGATTAT+GGG - tig0016220:9583-9602 Msa1357890:CDS 35.0%
TCAAAAAAGGGAAGAATGTC+TGG - tig0016220:10075-10094 Msa1357890:CDS 35.0%
!! TTTGCCAAGGATTTTGACAG+GGG + tig0016220:8803-8822 None:intergenic 40.0%
!! GATTTGCCAAGGATTTTGAC+AGG + tig0016220:8805-8824 None:intergenic 40.0%
GAAGCCTAAAGCCATAACTT+GGG - tig0016220:9096-9115 Msa1357890:intron 40.0%
TGGGGACCATGATGATAAAA+AGG - tig0016220:9259-9278 Msa1357890:CDS 40.0%
ACAAAGGCAGAAAATAGGCA+AGG - tig0016220:9460-9479 Msa1357890:CDS 40.0%
CAAAGGCAGAAAATAGGCAA+GGG - tig0016220:9461-9480 Msa1357890:CDS 40.0%
GAAAGATGAAATGGTCACAC+AGG - tig0016220:9549-9568 Msa1357890:intron 40.0%
ATCTTCTGTTGGATTATGGG+AGG - tig0016220:9586-9605 Msa1357890:CDS 40.0%
GGCACAACTCAAGAAATTTG+AGG - tig0016220:9631-9650 Msa1357890:CDS 40.0%
! ATTTCTTTGGTGCAACTCCA+CGG + tig0016220:10132-10151 None:intergenic 40.0%
!! TTTGCCAAGGATTTTGACAG+GGG + tig0016220:8803-8822 None:intergenic 40.0%
!! GATTTGCCAAGGATTTTGAC+AGG + tig0016220:8805-8824 None:intergenic 40.0%
GAAGCCTAAAGCCATAACTT+GGG - tig0016220:9096-9115 Msa1357890:intron 40.0%
TGGGGACCATGATGATAAAA+AGG - tig0016220:9259-9278 Msa1357890:CDS 40.0%
ACAAAGGCAGAAAATAGGCA+AGG - tig0016220:9460-9479 Msa1357890:CDS 40.0%
CAAAGGCAGAAAATAGGCAA+GGG - tig0016220:9461-9480 Msa1357890:CDS 40.0%
GAAAGATGAAATGGTCACAC+AGG - tig0016220:9549-9568 Msa1357890:intron 40.0%
ATCTTCTGTTGGATTATGGG+AGG - tig0016220:9586-9605 Msa1357890:CDS 40.0%
GGCACAACTCAAGAAATTTG+AGG - tig0016220:9631-9650 Msa1357890:CDS 40.0%
! ATTTCTTTGGTGCAACTCCA+CGG + tig0016220:10132-10151 None:intergenic 40.0%
AACCCCTGGCAAATTTGACA+GGG + tig0016220:8738-8757 None:intergenic 45.0%
GTAGTGGCTTCACTTCTATC+TGG - tig0016220:8837-8856 Msa1357890:CDS 45.0%
CGAAGCCTAAAGCCATAACT+TGG - tig0016220:9095-9114 Msa1357890:intron 45.0%
GCAACCCAAGTTATGGCTTT+AGG + tig0016220:9103-9122 None:intergenic 45.0%
! AAGCCATAACTTGGGTTGCA+TGG - tig0016220:9104-9123 Msa1357890:intron 45.0%
! AGTGATCATGGTTGGTGCAA+GGG + tig0016220:9130-9149 None:intergenic 45.0%
GAAAGCTCATGCAGTGATCA+TGG + tig0016220:9142-9161 None:intergenic 45.0%
CGACACATTTCAGTTCCACA+AGG + tig0016220:9759-9778 None:intergenic 45.0%
CGAACTTGTGCATGTAACAG+AGG + tig0016220:9804-9823 None:intergenic 45.0%
AACCCCTGGCAAATTTGACA+GGG + tig0016220:8738-8757 None:intergenic 45.0%
GTAGTGGCTTCACTTCTATC+TGG - tig0016220:8837-8856 Msa1357890:CDS 45.0%
CGAAGCCTAAAGCCATAACT+TGG - tig0016220:9095-9114 Msa1357890:intron 45.0%
GCAACCCAAGTTATGGCTTT+AGG + tig0016220:9103-9122 None:intergenic 45.0%
! AAGCCATAACTTGGGTTGCA+TGG - tig0016220:9104-9123 Msa1357890:intron 45.0%
! AGTGATCATGGTTGGTGCAA+GGG + tig0016220:9130-9149 None:intergenic 45.0%
GAAAGCTCATGCAGTGATCA+TGG + tig0016220:9142-9161 None:intergenic 45.0%
CGACACATTTCAGTTCCACA+AGG + tig0016220:9759-9778 None:intergenic 45.0%
CGAACTTGTGCATGTAACAG+AGG + tig0016220:9804-9823 None:intergenic 45.0%
!!! GAATAAATTTTTTATTTTAA+AGG + tig0016220:8929-8948 None:intergenic 5.0%
!!! GAATAAATTTTTTATTTTAA+AGG + tig0016220:8929-8948 None:intergenic 5.0%
TCACCCCTGTCAAATTTGCC+AGG - tig0016220:8731-8750 Msa1357890:CDS 50.0%
CACCCCTGTCAAATTTGCCA+GGG - tig0016220:8732-8751 Msa1357890:CDS 50.0%
ACCCCTGTCAAATTTGCCAG+GGG - tig0016220:8733-8752 Msa1357890:CDS 50.0%
ACCCCTGGCAAATTTGACAG+GGG + tig0016220:8737-8756 None:intergenic 50.0%
GAACCCCTGGCAAATTTGAC+AGG + tig0016220:8739-8758 None:intergenic 50.0%
AATTTGCCAGGGGTTCTCCT+TGG - tig0016220:8743-8762 Msa1357890:CDS 50.0%
AACCCCTGGCAAATTTCCCA+GGG + tig0016220:8775-8794 None:intergenic 50.0%
AAACCCCTGGCAAATTTCCC+AGG + tig0016220:8776-8795 None:intergenic 50.0%
CATGCCCCTGTCAAAATCCT+TGG - tig0016220:8796-8815 Msa1357890:CDS 50.0%
! CAGTGATCATGGTTGGTGCA+AGG + tig0016220:9131-9150 None:intergenic 50.0%
GCTCATGCAGTGATCATGGT+TGG + tig0016220:9138-9157 None:intergenic 50.0%
GACAAATCTCTCGAGCCTTG+TGG - tig0016220:9741-9760 Msa1357890:intron 50.0%
! GGAAGAATGTCTGGAGCTAG+AGG - tig0016220:10084-10103 Msa1357890:CDS 50.0%
TCACCCCTGTCAAATTTGCC+AGG - tig0016220:8731-8750 Msa1357890:CDS 50.0%
CACCCCTGTCAAATTTGCCA+GGG - tig0016220:8732-8751 Msa1357890:CDS 50.0%
ACCCCTGTCAAATTTGCCAG+GGG - tig0016220:8733-8752 Msa1357890:CDS 50.0%
ACCCCTGGCAAATTTGACAG+GGG + tig0016220:8737-8756 None:intergenic 50.0%
GAACCCCTGGCAAATTTGAC+AGG + tig0016220:8739-8758 None:intergenic 50.0%
AATTTGCCAGGGGTTCTCCT+TGG - tig0016220:8743-8762 Msa1357890:CDS 50.0%
AACCCCTGGCAAATTTCCCA+GGG + tig0016220:8775-8794 None:intergenic 50.0%
AAACCCCTGGCAAATTTCCC+AGG + tig0016220:8776-8795 None:intergenic 50.0%
CATGCCCCTGTCAAAATCCT+TGG - tig0016220:8796-8815 Msa1357890:CDS 50.0%
! CAGTGATCATGGTTGGTGCA+AGG + tig0016220:9131-9150 None:intergenic 50.0%
GCTCATGCAGTGATCATGGT+TGG + tig0016220:9138-9157 None:intergenic 50.0%
GACAAATCTCTCGAGCCTTG+TGG - tig0016220:9741-9760 Msa1357890:intron 50.0%
! GGAAGAATGTCTGGAGCTAG+AGG - tig0016220:10084-10103 Msa1357890:CDS 50.0%
TTCTCCTTGGCTTAGGCCCT+GGG - tig0016220:8756-8775 Msa1357890:CDS 55.0%
ATTTCCCAGGGCCTAAGCCA+AGG + tig0016220:8763-8782 None:intergenic 55.0%
TAGGCCCTGGGAAATTTGCC+AGG - tig0016220:8768-8787 Msa1357890:CDS 55.0%
AGGCCCTGGGAAATTTGCCA+GGG - tig0016220:8769-8788 Msa1357890:CDS 55.0%
GGGCCATGCAACCCAAGTTA+TGG + tig0016220:9110-9129 None:intergenic 55.0%
GCTAAGGGCTCAACTGACAG+AGG - tig0016220:9284-9303 Msa1357890:CDS 55.0%
GCTGCAAAGTTTCGTAGCCG+TGG - tig0016220:10112-10131 Msa1357890:CDS 55.0%
TTCTCCTTGGCTTAGGCCCT+GGG - tig0016220:8756-8775 Msa1357890:CDS 55.0%
ATTTCCCAGGGCCTAAGCCA+AGG + tig0016220:8763-8782 None:intergenic 55.0%
TAGGCCCTGGGAAATTTGCC+AGG - tig0016220:8768-8787 Msa1357890:CDS 55.0%
AGGCCCTGGGAAATTTGCCA+GGG - tig0016220:8769-8788 Msa1357890:CDS 55.0%
GGGCCATGCAACCCAAGTTA+TGG + tig0016220:9110-9129 None:intergenic 55.0%
GCTAAGGGCTCAACTGACAG+AGG - tig0016220:9284-9303 Msa1357890:CDS 55.0%
GCTGCAAAGTTTCGTAGCCG+TGG - tig0016220:10112-10131 Msa1357890:CDS 55.0%
CCTAAGCCAAGGAGAACCCC+TGG + tig0016220:8752-8771 None:intergenic 60.0%
CCAGGGGTTCTCCTTGGCTT+AGG - tig0016220:8749-8768 Msa1357890:CDS 60.0%
GTTCTCCTTGGCTTAGGCCC+TGG - tig0016220:8755-8774 Msa1357890:CDS 60.0%
GGCCCTGGGAAATTTGCCAG+GGG - tig0016220:8770-8789 Msa1357890:CDS 60.0%
! TGACAGGGGCATGAAACCCC+TGG + tig0016220:8789-8808 None:intergenic 60.0%
CCTAAGCCAAGGAGAACCCC+TGG + tig0016220:8752-8771 None:intergenic 60.0%
CCAGGGGTTCTCCTTGGCTT+AGG - tig0016220:8749-8768 Msa1357890:CDS 60.0%
GTTCTCCTTGGCTTAGGCCC+TGG - tig0016220:8755-8774 Msa1357890:CDS 60.0%
GGCCCTGGGAAATTTGCCAG+GGG - tig0016220:8770-8789 Msa1357890:CDS 60.0%
! TGACAGGGGCATGAAACCCC+TGG + tig0016220:8789-8808 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0016220 gene 8712 10174 8712 ID=Msa1357890;Name=Msa1357890
tig0016220 mRNA 8712 10174 8712 ID=Msa1357890-mRNA-1;Parent=Msa1357890;Name=Msa1357890-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|0.8|1|1|5|0|187
tig0016220 exon 10069 10174 10069 ID=Msa1357890-mRNA-1:exon:10574;Parent=Msa1357890-mRNA-1
tig0016220 exon 9581 9667 9581 ID=Msa1357890-mRNA-1:exon:10573;Parent=Msa1357890-mRNA-1
tig0016220 exon 9410 9497 9410 ID=Msa1357890-mRNA-1:exon:10572;Parent=Msa1357890-mRNA-1
tig0016220 exon 9234 9315 9234 ID=Msa1357890-mRNA-1:exon:10571;Parent=Msa1357890-mRNA-1
tig0016220 exon 8712 8912 8712 ID=Msa1357890-mRNA-1:exon:10570;Parent=Msa1357890-mRNA-1
tig0016220 CDS 10069 10174 10069 ID=Msa1357890-mRNA-1:cds;Parent=Msa1357890-mRNA-1
tig0016220 CDS 9581 9667 9581 ID=Msa1357890-mRNA-1:cds;Parent=Msa1357890-mRNA-1
tig0016220 CDS 9410 9497 9410 ID=Msa1357890-mRNA-1:cds;Parent=Msa1357890-mRNA-1
tig0016220 CDS 9234 9315 9234 ID=Msa1357890-mRNA-1:cds;Parent=Msa1357890-mRNA-1
tig0016220 CDS 8712 8912 8712 ID=Msa1357890-mRNA-1:cds;Parent=Msa1357890-mRNA-1
Gene Sequence

>Msa1357890

ATGGCAATTTGTGACGGGCTCACCCCTGTCAAATTTGCCAGGGGTTCTCCTTGGCTTAGGCCCTGGGAAATTTGCCAGGGGTTTCATGCCCCTGTCAAAATCCTTGAGATTGCAGTCGTAGATGATCATGCTGATAATAAGGAAACTGGGGACCATGATGATAAAAAGGATGCTAAGGGCTCAACTGACAGAGATGCTGGGCTTGCAAAAATTGTAGCAGAGAAAAGATTGGCTTTAATTAAAGCATGGGAAGAAAGTGAAAAGACAAAGGCAGAAAATAGGGCATACAAGAAGCAATCTTCTGTTGGATTATGGGAGGAAAGCAAGAAATCATCTATAGAGGCACAACTCAAGAAATTTGAGGAAAATTTGGAAAGAAAGAAAGTTGAGTATATTTCAAAAATGAAAAATGAACTAGCTGAAATTCATCAATATGCTGAAGAGAAAAGAGCAATAGTTGAAGCTCAAAAAAGGGAAGAATGTCTGGAGCTAGAGGAAACAGCTGCAAAGTTTCGTAGCCGTGGAGTTGCACCAAAGAAATTGTTTGCATGCTTTAGCGCTTAA

Protein sequence

>Msa1357890

MAICDGLTPVKFARGSPWLRPWEICQGFHAPVKILEIAVVDDHADNKETGDHDDKKDAKGSTDRDAGLAKIVAEKRLALIKAWEESEKTKAENRAYKKQSSVGLWEESKKSSIEAQLKKFEENLERKKVEYISKMKNELAEIHQYAEEKRAIVEAQKREECLELEETAAKFRSRGVAPKKLFACFSA*