AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0858190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858190 MtrunA17_Chr5g0436791 96.594 323 8 2 1 320 1 323 0.0 612
Msa0858190 MtrunA17_Chr3g0138631 90.093 323 29 1 1 320 1 323 0.0 551
Msa0858190 MtrunA17_Chr7g0222411 67.308 104 33 1 11 113 7 110 2.65e-41 142
Msa0858190 MtrunA17_Chr7g0272291 67.416 89 28 1 11 98 7 95 9.30e-34 119
Msa0858190 MtrunA17_Chr3g0115971 54.630 108 27 2 63 169 8 94 1.30e-22 92.0
Msa0858190 MtrunA17_Chr1g0168061 70.370 81 21 1 243 320 1 81 1.04e-19 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858190 AT2G40010.1 83.333 318 52 1 1 318 1 317 0.0 516
Msa0858190 AT3G09200.1 88.364 275 32 0 4 278 3 277 3.30e-179 498
Msa0858190 AT3G11250.1 88.000 275 33 0 4 278 3 277 2.67e-178 496
Msa0858190 AT3G09200.2 77.455 275 29 1 4 278 3 244 4.23e-149 421

Find 114 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGATTCGGTTGTTCTTA+TGG 0.196398 5_4:-55454678 Msa0858190:CDS
AATGGTTACTTCACTTTCTT+TGG 0.205850 5_4:-55452680 Msa0858190:CDS
AAATTTACTATCAAGTATTT+TGG 0.220545 5_4:-55452277 Msa0858190:three_prime_UTR
CGTGTTTAGCCCTGAGGTTC+TGG 0.240105 5_4:-55452749 Msa0858190:CDS
TTCTCGGCTTTGGTTGGTTT+TGG 0.243035 5_4:+55454818 None:intergenic
CTCCCAGACCTCTTTCTTCC+AGG 0.263863 5_4:-55453028 Msa0858190:intron
TCTGATGAGGACATTGGTTT+TGG 0.301112 5_4:-55452327 Msa0858190:CDS
CCCTTCTTGATGAGTTCAAC+AGG 0.305313 5_4:+55452871 None:intergenic
GGTGATTCGGTTGTTCTTAT+GGG 0.317103 5_4:-55454677 Msa0858190:CDS
AGCTTGTTTCTTCTCGGCTT+TGG 0.324216 5_4:+55454808 None:intergenic
GTCGTAAGCTTGTTTCTTCT+CGG 0.324343 5_4:+55454802 None:intergenic
CATAATGGAAAATACAAAAT+AGG 0.326591 5_4:+55452193 None:intergenic
GATAGAGTAGGCACAAGTTC+CGG 0.327773 5_4:+55452110 None:intergenic
AATGTCCTCATCAGATTCTT+CGG 0.355885 5_4:+55452335 None:intergenic
GACCTCCTTGAGGTCTCCTT+TGG 0.367672 5_4:+55454086 None:intergenic
GCAGCTACAGCAAACTTACT+TGG 0.386082 5_4:+55452426 None:intergenic
GGCTCCTCATTGGCAGCAGC+AGG 0.392589 5_4:+55452357 None:intergenic
TGCTTGCCAAGCTAGGCATC+AGG 0.396220 5_4:-55452819 Msa0858190:CDS
AGCTCCTGCTCGTGTTGGTT+TGG 0.398892 5_4:-55453100 Msa0858190:CDS
TCCTTAACCTTGTCAGCCTC+AGG 0.406863 5_4:+55452562 None:intergenic
ATAGAGTAGGCACAAGTTCC+GGG 0.407425 5_4:+55452111 None:intergenic
CCCTGAGGCTGACAAGGTTA+AGG 0.407662 5_4:-55452563 Msa0858190:CDS
GGGTCAAGCCCTGTGTTGCC+AGG 0.414669 5_4:+55453051 None:intergenic
ATCACCAAAAGGAGTCATAA+TGG 0.416393 5_4:+55452178 None:intergenic
AGATTCTTCGGGCTCCTCAT+TGG 0.417156 5_4:+55452347 None:intergenic
ATGTCCTCATCAGATTCTTC+GGG 0.421187 5_4:+55452336 None:intergenic
GGAGGGACAACAACATCAAT+TGG 0.422188 5_4:+55453072 None:intergenic
AGGCGCAGCAGCAGAAGCAT+CGG 0.424763 5_4:+55452389 None:intergenic
GCAGCAGCAGAAGCATCGGC+TGG 0.425400 5_4:+55452393 None:intergenic
TGGTGGTTTACGTGGTGATT+CGG 0.441475 5_4:-55454690 Msa0858190:CDS
GCTGCACTGCTTGCCAAGCT+AGG 0.445861 5_4:-55452826 Msa0858190:CDS
AGTACCCTTGTTAATCTTTG+TGG 0.446463 5_4:+55452909 None:intergenic
GCAGCAGCAGGTGCAGCAGC+AGG 0.446792 5_4:+55452369 None:intergenic
GTACCCTTGTTAATCTTTGT+GGG 0.449524 5_4:+55452910 None:intergenic
GACCACAAGTCCATATGAAA+AGG 0.455518 5_4:+55452795 None:intergenic
AGGTAAGTTTACCTTGTACT+TGG 0.456613 5_4:+55454050 None:intergenic
ATTGATGTTGTTGTCCCTCC+TGG 0.461091 5_4:-55453069 Msa0858190:CDS
TCAGTAAGATCCAGAACCTC+AGG 0.467312 5_4:+55452739 None:intergenic
AGCAGCAGAAGCATCGGCTG+GGG 0.467961 5_4:+55452395 None:intergenic
CAAGGTTAAGGAGTTCTTGA+AGG 0.472356 5_4:-55452551 Msa0858190:intron
GTTGTCCCTCCTGGCAACAC+AGG 0.477212 5_4:-55453060 Msa0858190:CDS
TAGAATTACTCTATTAACTC+AGG 0.478029 5_4:-55452040 Msa0858190:three_prime_UTR
GTTTGCCATTGGTGTCTCAA+TGG 0.478230 5_4:-55452698 Msa0858190:CDS
TGTTTCTTCTCGGCTTTGGT+TGG 0.480748 5_4:+55454812 None:intergenic
CTTCAAGATCGAACAAATGA+TGG 0.488336 5_4:+55452236 None:intergenic
TGCACCTGCTGCTGCCAATG+AGG 0.493341 5_4:-55452361 Msa0858190:CDS
GAGTGAATTCATCGAGAAGC+TGG 0.498381 5_4:+55454768 None:intergenic
ACACCTGGAAGAAAGAGGTC+TGG 0.501363 5_4:+55453025 None:intergenic
CACCACGAATATTCTGAAGT+TGG 0.502245 5_4:+55454708 None:intergenic
AGGATGCACGCTGAGAAGAC+TGG 0.512164 5_4:-55454626 Msa0858190:CDS
TCCATTGAAACAGGGAAATG+TGG 0.512479 5_4:-55454121 Msa0858190:intron
TTCTTTCCCTGAGGCTGACA+AGG 0.513735 5_4:-55452569 Msa0858190:CDS
CTTGTTGCGAAGTTTGCCAT+TGG 0.515487 5_4:-55452709 Msa0858190:CDS
TTGTCCCTCCTGGCAACACA+GGG 0.516892 5_4:-55453059 Msa0858190:CDS
GCAACCAAACCAACACGAGC+AGG 0.521300 5_4:+55453096 None:intergenic
CAGCAGCAGAAGCATCGGCT+GGG 0.524102 5_4:+55452394 None:intergenic
TTGATGATGAGCAAAATTGA+GGG 0.524364 5_4:+55454846 None:intergenic
AAAGGGCCTGATGCCTAGCT+TGG 0.525365 5_4:+55452813 None:intergenic
TTACAACAAGGAGAGGGATA+AGG 0.527470 5_4:+55454585 None:intergenic
CAAGCCCTGTGTTGCCAGGA+GGG 0.529456 5_4:+55453055 None:intergenic
GGAAGAAAGAGGTCTGGGAG+GGG 0.529694 5_4:+55453031 None:intergenic
GGAAAACTTACAACAAGGAG+AGG 0.531137 5_4:+55454578 None:intergenic
GTTGGAGCTCCTGCTCGTGT+TGG 0.532062 5_4:-55453105 Msa0858190:CDS
CCCTGTTGAACTCATCAAGA+AGG 0.543687 5_4:-55452872 Msa0858190:CDS
TGGAAGAAAGAGGTCTGGGA+GGG 0.545188 5_4:+55453030 None:intergenic
AACCAACTTCAGAATATTCG+TGG 0.545937 5_4:-55454710 Msa0858190:CDS
ACCACAAGTCCATATGAAAA+GGG 0.552112 5_4:+55452796 None:intergenic
AATATTCGTGGTGGTTTACG+TGG 0.555191 5_4:-55454698 Msa0858190:CDS
TCAAGCCCTGTGTTGCCAGG+AGG 0.558382 5_4:+55453054 None:intergenic
GGATGCACGCTGAGAAGACT+GGG 0.558969 5_4:-55454625 Msa0858190:CDS
CACCTGGAAGAAAGAGGTCT+GGG 0.559601 5_4:+55453026 None:intergenic
ATTGATGATGAGCAAAATTG+AGG 0.561511 5_4:+55454845 None:intergenic
GTGATTCGGTTGTTCTTATG+GGG 0.567097 5_4:-55454676 Msa0858190:CDS
CCATTGAAACAGGGAAATGT+GGG 0.567932 5_4:-55454120 Msa0858190:intron
AGCGAGTGTAGGATAAGAGA+TGG 0.573155 5_4:+55452657 None:intergenic
ATTGTTAATGCTGATAACGT+TGG 0.574787 5_4:-55454737 Msa0858190:CDS
TGAAGAGGTTGCCAAGTACA+AGG 0.574954 5_4:-55454061 Msa0858190:intron
TTATAAGTAACATCACCAAA+AGG 0.575160 5_4:+55452167 None:intergenic
CATTCCCACAAAGATTAACA+AGG 0.575244 5_4:-55452914 Msa0858190:CDS
GCAAAGATTATAGATAGAGT+AGG 0.581568 5_4:+55452098 None:intergenic
TGAGGTGCAGCAGCGAGTGT+AGG 0.582500 5_4:+55452646 None:intergenic
AGAATTACTCTATTAACTCA+GGG 0.582989 5_4:-55452039 Msa0858190:three_prime_UTR
CCTGTTGAACTCATCAAGAA+GGG 0.586555 5_4:-55452871 Msa0858190:CDS
GAAGAATCTGATGAGGACAT+TGG 0.587691 5_4:-55452333 Msa0858190:CDS
ATGACACACCTGGAAGAAAG+AGG 0.591526 5_4:+55453020 None:intergenic
AGCCTCAGGGAAAGAATACT+CGG 0.591842 5_4:+55452576 None:intergenic
CAGCTACAGCAAACTTACTT+GGG 0.593694 5_4:+55452427 None:intergenic
CCTCAAGGAGGTCAGTGAAG+AGG 0.593760 5_4:-55454076 Msa0858190:CDS
GTCCTCTCTGTGTATGACAA+TGG 0.596487 5_4:-55452775 Msa0858190:CDS
CCTCTTCACTGACCTCCTTG+AGG 0.596985 5_4:+55454076 None:intergenic
ATCAAGAAGGGAGACAAGGT+TGG 0.597841 5_4:-55452859 Msa0858190:CDS
CAATGGCAAACTTCGCAACA+AGG 0.607643 5_4:+55452710 None:intergenic
CCTTCTTGATGAGTTCAACA+GGG 0.614444 5_4:+55452872 None:intergenic
CTGGAAGAAAGAGGTCTGGG+AGG 0.617148 5_4:+55453029 None:intergenic
TTTCACCAAAGGAGACCTCA+AGG 0.617367 5_4:-55454091 Msa0858190:CDS
CCTTAACCTTGTCAGCCTCA+GGG 0.620363 5_4:+55452563 None:intergenic
AAAGATTAACAAGGGTACTG+TGG 0.621923 5_4:-55452905 Msa0858190:CDS
ATTTGAATGACAATTGAACC+CGG 0.629215 5_4:-55452129 Msa0858190:three_prime_UTR
TGAGGTTCTGGATCTTACTG+AGG 0.633543 5_4:-55452737 Msa0858190:CDS
CAGAACCTCAGGGCTAAACA+CGG 0.642065 5_4:+55452750 None:intergenic
TGGCTCCGTGTTTAGCCCTG+AGG 0.648541 5_4:-55452755 Msa0858190:CDS
GAAAACTTACAACAAGGAGA+GGG 0.650596 5_4:+55454579 None:intergenic
GGAGCCCGAAGAATCTGATG+AGG 0.657492 5_4:-55452340 Msa0858190:CDS
CAACTTCAGAATATTCGTGG+TGG 0.669173 5_4:-55454707 Msa0858190:CDS
ACTCATCAAGAAGGGAGACA+AGG 0.673191 5_4:-55452863 Msa0858190:CDS
CAGTAAGATCCAGAACCTCA+GGG 0.683560 5_4:+55452740 None:intergenic
AACCGAGTATTCTTTCCCTG+AGG 0.686463 5_4:-55452578 Msa0858190:CDS
CTTCTTGATGAGTTCAACAG+GGG 0.687686 5_4:+55452873 None:intergenic
AGTAACCATTGAGACACCAA+TGG 0.697332 5_4:+55452693 None:intergenic
ATTCCCACAAAGATTAACAA+GGG 0.700399 5_4:-55452913 Msa0858190:CDS
TATGCATTCACGAACATGTG+AGG 0.724385 5_4:+55452628 None:intergenic
AGCCATTGTCATACACAGAG+AGG 0.730101 5_4:+55452773 None:intergenic
CACCAAAGGAGACCTCAAGG+AGG 0.756266 5_4:-55454088 Msa0858190:CDS
CTATGATGAAGAGATCTGTG+AGG 0.762423 5_4:-55454646 Msa0858190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTAGGATTTTAATTT+AGG - chr5_4:55452585-55452604 Msa0858190:CDS 10.0%
!!! TTTGATTTTTTTTTGATATT+TGG - chr5_4:55452630-55452649 Msa0858190:CDS 10.0%
!! ATTACTTTCAATAAATTATA+TGG - chr5_4:55453486-55453505 Msa0858190:intron 10.0%
!!! ATATTTAACTTTGAAATTTT+AGG - chr5_4:55453925-55453944 Msa0858190:intron 10.0%
!!! AATTCTGATTTTTTAGTTAT+TGG - chr5_4:55452449-55452468 Msa0858190:intron 15.0%
!!! TTTTTATCTGAAATATGTTA+AGG - chr5_4:55452500-55452519 Msa0858190:intron 15.0%
!!! ATTTTAATTTAGGTTGTTTT+TGG - chr5_4:55452595-55452614 Msa0858190:CDS 15.0%
!!! TTTTAATTTAGGTTGTTTTT+GGG - chr5_4:55452596-55452615 Msa0858190:CDS 15.0%
!! ATTTATTGAAATTAATTGGT+TGG - chr5_4:55452663-55452682 Msa0858190:CDS 15.0%
!!! TATAAAAGTAATTTGTGATA+TGG - chr5_4:55453053-55453072 Msa0858190:CDS 15.0%
!!! ATAAAAGTAATTTGTGATAT+GGG - chr5_4:55453054-55453073 Msa0858190:CDS 15.0%
!!! TTTTTTAATCAACATTTTGT+CGG - chr5_4:55453190-55453209 Msa0858190:intron 15.0%
!!! TAAACAGTTTTTAGTATTTA+TGG - chr5_4:55453246-55453265 Msa0858190:intron 15.0%
!! GTAGTAAAAAAATAACATTT+CGG + chr5_4:55453371-55453390 None:intergenic 15.0%
!!! ATTTAATTTATATCTAATGC+AGG - chr5_4:55453515-55453534 Msa0858190:intron 15.0%
!!! TTTAATTTATATCTAATGCA+GGG - chr5_4:55453516-55453535 Msa0858190:intron 15.0%
!! AATTTGTAGGAATAAAAATT+AGG + chr5_4:55453564-55453583 None:intergenic 15.0%
!!! AAATTTACTATCAAGTATTT+TGG - chr5_4:55454592-55454611 Msa0858190:CDS 15.0%
!! ATGATATTGAATGATGAATT+GGG - chr5_4:55452337-55452356 Msa0858190:CDS 20.0%
!!! TTACGATTTTATTTTGTCAA+GGG - chr5_4:55452408-55452427 Msa0858190:CDS 20.0%
!! TCGGTATTATTGAAAAATTT+AGG - chr5_4:55452572-55452591 Msa0858190:CDS 20.0%
!! TTTACATGACAATTACAAAA+AGG + chr5_4:55452842-55452861 None:intergenic 20.0%
!! AAAATCATAATGAAAAAGAG+TGG + chr5_4:55452909-55452928 None:intergenic 20.0%
!! TTTCATATGTTCTTCAATAT+AGG - chr5_4:55453218-55453237 Msa0858190:intron 20.0%
!! ACATAGAAAAAGATAACATA+AGG + chr5_4:55453283-55453302 None:intergenic 20.0%
!! TAAAGCAACTTAAATATTCA+TGG - chr5_4:55453397-55453416 Msa0858190:intron 20.0%
!! CTTTCAATAAATTATATGGT+TGG - chr5_4:55453490-55453509 Msa0858190:intron 20.0%
!! TTAATTTATATCTAATGCAG+GGG - chr5_4:55453517-55453536 Msa0858190:intron 20.0%
!! ATTCAATTGAAACAATTTGT+AGG + chr5_4:55453577-55453596 None:intergenic 20.0%
!! ACAAAAAAATAGAATAACCA+GGG + chr5_4:55453621-55453640 None:intergenic 20.0%
!! AACAAAAAAATAGAATAACC+AGG + chr5_4:55453622-55453641 None:intergenic 20.0%
!!! TATTCTATTTTTTTGTTCCT+TGG - chr5_4:55453625-55453644 Msa0858190:intron 20.0%
!! GGAAATATCATGTAATTAAT+AGG + chr5_4:55453729-55453748 None:intergenic 20.0%
!! ACATGATATTTCCTTTAAAT+TGG - chr5_4:55453736-55453755 Msa0858190:intron 20.0%
!! TATTTCCTTTAAATTGGAAT+AGG - chr5_4:55453742-55453761 Msa0858190:intron 20.0%
!!! CATAATGGAAAATACAAAAT+AGG + chr5_4:55454679-55454698 None:intergenic 20.0%
! AATGAACAAAAACTAGAGAT+TGG + chr5_4:55452315-55452334 None:intergenic 25.0%
! GATGATATTGAATGATGAAT+TGG - chr5_4:55452336-55452355 Msa0858190:CDS 25.0%
!!! GTTACGATTTTATTTTGTCA+AGG - chr5_4:55452407-55452426 Msa0858190:CDS 25.0%
! GTGAATCTTGAATGAATAAT+TGG - chr5_4:55452538-55452557 Msa0858190:intron 25.0%
!!! ATAATTGGTTAGTTCTGAAT+CGG - chr5_4:55452553-55452572 Msa0858190:CDS 25.0%
!! AATTAATTGGTTGGTTATAC+TGG - chr5_4:55452672-55452691 Msa0858190:CDS 25.0%
! TACTTAGTATTAAGTGTGTT+TGG - chr5_4:55452951-55452970 Msa0858190:intron 25.0%
! ACTTAGTATTAAGTGTGTTT+GGG - chr5_4:55452952-55452971 Msa0858190:intron 25.0%
!! GTTTGTTGAAAAGAATTTGA+TGG - chr5_4:55452980-55452999 Msa0858190:intron 25.0%
! GTGAAGTAAAAACTAAGTTA+AGG - chr5_4:55453096-55453115 Msa0858190:CDS 25.0%
!! TTGACTTATTTGAAACTGTT+TGG - chr5_4:55453139-55453158 Msa0858190:intron 25.0%
!! TGACTTATTTGAAACTGTTT+GGG - chr5_4:55453140-55453159 Msa0858190:intron 25.0%
! AAAAATTAGGAGCAAAACTT+TGG + chr5_4:55453551-55453570 None:intergenic 25.0%
!!! AATTTTAATCTTTGAAACCC+TGG - chr5_4:55453601-55453620 Msa0858190:intron 25.0%
! GTATATGAGTATTACTGTAA+TGG - chr5_4:55453884-55453903 Msa0858190:intron 25.0%
! AGATTAAGGAGTAAGAAATA+AGG + chr5_4:55454408-55454427 None:intergenic 25.0%
! TTATAAGTAACATCACCAAA+AGG + chr5_4:55454705-55454724 None:intergenic 25.0%
! TAGAATTACTCTATTAACTC+AGG - chr5_4:55454829-55454848 Msa0858190:exon 25.0%
! AGAATTACTCTATTAACTCA+GGG - chr5_4:55454830-55454849 Msa0858190:exon 25.0%
! TCAATTTTGCTCATCATCAA+TGG - chr5_4:55452026-55452045 Msa0858190:three_prime_UTR 30.0%
! ATTGTTAATGCTGATAACGT+TGG - chr5_4:55452132-55452151 Msa0858190:three_prime_UTR 30.0%
AGATTGGAAAACTTACAACA+AGG + chr5_4:55452299-55452318 None:intergenic 30.0%
TGTAATTGTCATGTAAAGCT+TGG - chr5_4:55452845-55452864 Msa0858190:CDS 30.0%
! TATGGGTTTTCTTGATAAAC+TGG - chr5_4:55453071-55453090 Msa0858190:CDS 30.0%
TCCTTTAAATTGGAATAGGT+TGG - chr5_4:55453746-55453765 Msa0858190:intron 30.0%
TCCAACCTATTCCAATTTAA+AGG + chr5_4:55453750-55453769 None:intergenic 30.0%
CAGTAATACTCATATACCAA+TGG + chr5_4:55453881-55453900 None:intergenic 30.0%
ATTCCCACAAAGATTAACAA+GGG - chr5_4:55453956-55453975 Msa0858190:intron 30.0%
AATGGTTACTTCACTTTCTT+TGG - chr5_4:55454189-55454208 Msa0858190:intron 30.0%
TCCTTAATCTTGTATAATGC+AGG - chr5_4:55454418-55454437 Msa0858190:intron 30.0%
TCCTGCATTATACAAGATTA+AGG + chr5_4:55454422-55454441 None:intergenic 30.0%
! TTTTCCATTATGACTCCTTT+TGG - chr5_4:55454687-55454706 Msa0858190:CDS 30.0%
ATTTGAATGACAATTGAACC+CGG - chr5_4:55454740-55454759 Msa0858190:CDS 30.0%
GCAAAGATTATAGATAGAGT+AGG + chr5_4:55454774-55454793 None:intergenic 30.0%
AACCAACTTCAGAATATTCG+TGG - chr5_4:55452159-55452178 Msa0858190:three_prime_UTR 35.0%
GAAAACTTACAACAAGGAGA+GGG + chr5_4:55452293-55452312 None:intergenic 35.0%
AGGTAAGTTTACCTTGTACT+TGG + chr5_4:55452822-55452841 None:intergenic 35.0%
!! TACACTAAAAGCATTGCGTA+TGG + chr5_4:55452883-55452902 None:intergenic 35.0%
TAGTATTAAGTGTGTTTGGG+TGG - chr5_4:55452955-55452974 Msa0858190:intron 35.0%
TCAAATAAGTCAATCCAGAC+AGG + chr5_4:55453132-55453151 None:intergenic 35.0%
TATGACTTCCAAACACATGT+TGG - chr5_4:55453432-55453451 Msa0858190:intron 35.0%
TTGTGTTTGTTTAGATCCTG+TGG + chr5_4:55453461-55453480 None:intergenic 35.0%
AATGAGCATATTGACAACCA+AGG + chr5_4:55453645-55453664 None:intergenic 35.0%
CATTCCCACAAAGATTAACA+AGG - chr5_4:55453955-55453974 Msa0858190:intron 35.0%
GTACCCTTGTTAATCTTTGT+GGG + chr5_4:55453962-55453981 None:intergenic 35.0%
AGTACCCTTGTTAATCTTTG+TGG + chr5_4:55453963-55453982 None:intergenic 35.0%
!! AAAGATTAACAAGGGTACTG+TGG - chr5_4:55453964-55453983 Msa0858190:intron 35.0%
ACCACAAGTCCATATGAAAA+GGG + chr5_4:55454076-55454095 None:intergenic 35.0%
! TGACTTGTCTTTACTTGTCT+TGG - chr5_4:55454344-55454363 Msa0858190:intron 35.0%
AATGTCCTCATCAGATTCTT+CGG + chr5_4:55454537-55454556 None:intergenic 35.0%
!!! GACATTGGTTTTGGTCTTTT+TGG - chr5_4:55454551-55454570 Msa0858190:intron 35.0%
CTTCAAGATCGAACAAATGA+TGG + chr5_4:55454636-55454655 None:intergenic 35.0%
ATCACCAAAAGGAGTCATAA+TGG + chr5_4:55454694-55454713 None:intergenic 35.0%
! GTCGTAAGCTTGTTTCTTCT+CGG + chr5_4:55452070-55452089 None:intergenic 40.0%
!! CACCACGAATATTCTGAAGT+TGG + chr5_4:55452164-55452183 None:intergenic 40.0%
CAACTTCAGAATATTCGTGG+TGG - chr5_4:55452162-55452181 Msa0858190:three_prime_UTR 40.0%
AATATTCGTGGTGGTTTACG+TGG - chr5_4:55452171-55452190 Msa0858190:three_prime_UTR 40.0%
!! TGGTGATTCGGTTGTTCTTA+TGG - chr5_4:55452191-55452210 Msa0858190:three_prime_UTR 40.0%
!! GGTGATTCGGTTGTTCTTAT+GGG - chr5_4:55452192-55452211 Msa0858190:three_prime_UTR 40.0%
!! GTGATTCGGTTGTTCTTATG+GGG - chr5_4:55452193-55452212 Msa0858190:three_prime_UTR 40.0%
CTATGATGAAGAGATCTGTG+AGG - chr5_4:55452223-55452242 Msa0858190:three_prime_UTR 40.0%
TTACAACAAGGAGAGGGATA+AGG + chr5_4:55452287-55452306 None:intergenic 40.0%
GGAAAACTTACAACAAGGAG+AGG + chr5_4:55452294-55452313 None:intergenic 40.0%
TTTCCCTGTTTCAATGGACA+TGG + chr5_4:55452746-55452765 None:intergenic 40.0%
TCCATTGAAACAGGGAAATG+TGG - chr5_4:55452748-55452767 Msa0858190:CDS 40.0%
CCATTGAAACAGGGAAATGT+GGG - chr5_4:55452749-55452768 Msa0858190:CDS 40.0%
!! GTGGGTTTGATTTTCACCAA+AGG - chr5_4:55452767-55452786 Msa0858190:CDS 40.0%
! GGGTTTTCTTGATAAACTGG+TGG - chr5_4:55453074-55453093 Msa0858190:CDS 40.0%
CTTCTTGATGAGTTCAACAG+GGG + chr5_4:55453999-55454018 None:intergenic 40.0%
CCTTCTTGATGAGTTCAACA+GGG + chr5_4:55454000-55454019 None:intergenic 40.0%
CCTGTTGAACTCATCAAGAA+GGG - chr5_4:55453998-55454017 Msa0858190:intron 40.0%
GACCACAAGTCCATATGAAA+AGG + chr5_4:55454077-55454096 None:intergenic 40.0%
AGTAACCATTGAGACACCAA+TGG + chr5_4:55454179-55454198 None:intergenic 40.0%
TATGCATTCACGAACATGTG+AGG + chr5_4:55454244-55454263 None:intergenic 40.0%
CAAGGTTAAGGAGTTCTTGA+AGG - chr5_4:55454318-55454337 Msa0858190:intron 40.0%
CAGCTACAGCAAACTTACTT+GGG + chr5_4:55454445-55454464 None:intergenic 40.0%
ATGTCCTCATCAGATTCTTC+GGG + chr5_4:55454536-55454555 None:intergenic 40.0%
GAAGAATCTGATGAGGACAT+TGG - chr5_4:55454536-55454555 Msa0858190:intron 40.0%
!!! TCTGATGAGGACATTGGTTT+TGG - chr5_4:55454542-55454561 Msa0858190:intron 40.0%
!!! TTCTCGGCTTTGGTTGGTTT+TGG + chr5_4:55452054-55452073 None:intergenic 45.0%
! TGTTTCTTCTCGGCTTTGGT+TGG + chr5_4:55452060-55452079 None:intergenic 45.0%
! AGCTTGTTTCTTCTCGGCTT+TGG + chr5_4:55452064-55452083 None:intergenic 45.0%
GAGTGAATTCATCGAGAAGC+TGG + chr5_4:55452104-55452123 None:intergenic 45.0%
TGGTGGTTTACGTGGTGATT+CGG - chr5_4:55452179-55452198 Msa0858190:three_prime_UTR 45.0%
AGTGCCATGTCCATTGAAAC+AGG - chr5_4:55452739-55452758 Msa0858190:CDS 45.0%
GTGCCATGTCCATTGAAACA+GGG - chr5_4:55452740-55452759 Msa0858190:CDS 45.0%
CCCACATTTCCCTGTTTCAA+TGG + chr5_4:55452752-55452771 None:intergenic 45.0%
TTTCACCAAAGGAGACCTCA+AGG - chr5_4:55452778-55452797 Msa0858190:CDS 45.0%
TGAAGAGGTTGCCAAGTACA+AGG - chr5_4:55452808-55452827 Msa0858190:CDS 45.0%
AAGGTCTTCATACTCCTGTC+TGG - chr5_4:55453115-55453134 Msa0858190:intron 45.0%
TGTGGAGACCAACATGTGTT+TGG + chr5_4:55453443-55453462 None:intergenic 45.0%
! AAACACATGTTGGTCTCCAC+AGG - chr5_4:55453442-55453461 Msa0858190:intron 45.0%
TATATCTAATGCAGGGGCAG+TGG - chr5_4:55453523-55453542 Msa0858190:intron 45.0%
ATATCTAATGCAGGGGCAGT+GGG - chr5_4:55453524-55453543 Msa0858190:intron 45.0%
GGAGGGACAACAACATCAAT+TGG + chr5_4:55453800-55453819 None:intergenic 45.0%
ATTGATGTTGTTGTCCCTCC+TGG - chr5_4:55453800-55453819 Msa0858190:intron 45.0%
ATGACACACCTGGAAGAAAG+AGG + chr5_4:55453852-55453871 None:intergenic 45.0%
CCCTGTTGAACTCATCAAGA+AGG - chr5_4:55453997-55454016 Msa0858190:intron 45.0%
CCCTTCTTGATGAGTTCAAC+AGG + chr5_4:55454001-55454020 None:intergenic 45.0%
ACTCATCAAGAAGGGAGACA+AGG - chr5_4:55454006-55454025 Msa0858190:intron 45.0%
ATCAAGAAGGGAGACAAGGT+TGG - chr5_4:55454010-55454029 Msa0858190:intron 45.0%
! GCCCTTTTCATATGGACTTG+TGG - chr5_4:55454072-55454091 Msa0858190:CDS 45.0%
GTCCTCTCTGTGTATGACAA+TGG - chr5_4:55454094-55454113 Msa0858190:CDS 45.0%
AGCCATTGTCATACACAGAG+AGG + chr5_4:55454099-55454118 None:intergenic 45.0%
CAGTAAGATCCAGAACCTCA+GGG + chr5_4:55454132-55454151 None:intergenic 45.0%
TCAGTAAGATCCAGAACCTC+AGG + chr5_4:55454133-55454152 None:intergenic 45.0%
!! TGAGGTTCTGGATCTTACTG+AGG - chr5_4:55454132-55454151 Msa0858190:intron 45.0%
CAATGGCAAACTTCGCAACA+AGG + chr5_4:55454162-55454181 None:intergenic 45.0%
CTTGTTGCGAAGTTTGCCAT+TGG - chr5_4:55454160-55454179 Msa0858190:intron 45.0%
! GTTTGCCATTGGTGTCTCAA+TGG - chr5_4:55454171-55454190 Msa0858190:intron 45.0%
AGCGAGTGTAGGATAAGAGA+TGG + chr5_4:55454215-55454234 None:intergenic 45.0%
AACCGAGTATTCTTTCCCTG+AGG - chr5_4:55454291-55454310 Msa0858190:intron 45.0%
AGCCTCAGGGAAAGAATACT+CGG + chr5_4:55454296-55454315 None:intergenic 45.0%
GCAGCTACAGCAAACTTACT+TGG + chr5_4:55454446-55454465 None:intergenic 45.0%
ATAGAGTAGGCACAAGTTCC+GGG + chr5_4:55454761-55454780 None:intergenic 45.0%
GATAGAGTAGGCACAAGTTC+CGG + chr5_4:55454762-55454781 None:intergenic 45.0%
!! TAATATTTATTGAAATTAAT+TGG - chr5_4:55452659-55452678 Msa0858190:CDS 5.0%
TGGAAGAAAGAGGTCTGGGA+GGG + chr5_4:55453842-55453861 None:intergenic 50.0%
CACCTGGAAGAAAGAGGTCT+GGG + chr5_4:55453846-55453865 None:intergenic 50.0%
ACACCTGGAAGAAAGAGGTC+TGG + chr5_4:55453847-55453866 None:intergenic 50.0%
ATGGAGCAAGATGACACACC+TGG + chr5_4:55453862-55453881 None:intergenic 50.0%
GGTGTGTCATCTTGCTCCAT+TGG - chr5_4:55453862-55453881 Msa0858190:intron 50.0%
! GGCATCAGGCCCTTTTCATA+TGG - chr5_4:55454064-55454083 Msa0858190:CDS 50.0%
CAGAACCTCAGGGCTAAACA+CGG + chr5_4:55454122-55454141 None:intergenic 50.0%
TTCTTTCCCTGAGGCTGACA+AGG - chr5_4:55454300-55454319 Msa0858190:intron 50.0%
CCTTAACCTTGTCAGCCTCA+GGG + chr5_4:55454309-55454328 None:intergenic 50.0%
TCCTTAACCTTGTCAGCCTC+AGG + chr5_4:55454310-55454329 None:intergenic 50.0%
AGATTCTTCGGGCTCCTCAT+TGG + chr5_4:55454525-55454544 None:intergenic 50.0%
AGGATGCACGCTGAGAAGAC+TGG - chr5_4:55452243-55452262 Msa0858190:three_prime_UTR 55.0%
GGATGCACGCTGAGAAGACT+GGG - chr5_4:55452244-55452263 Msa0858190:three_prime_UTR 55.0%
CACCAAAGGAGACCTCAAGG+AGG - chr5_4:55452781-55452800 Msa0858190:CDS 55.0%
GACCTCCTTGAGGTCTCCTT+TGG + chr5_4:55452786-55452805 None:intergenic 55.0%
CCTCTTCACTGACCTCCTTG+AGG + chr5_4:55452796-55452815 None:intergenic 55.0%
CCTCAAGGAGGTCAGTGAAG+AGG - chr5_4:55452793-55452812 Msa0858190:CDS 55.0%
!! AGCTCCTGCTCGTGTTGGTT+TGG - chr5_4:55453769-55453788 Msa0858190:intron 55.0%
GCAACCAAACCAACACGAGC+AGG + chr5_4:55453776-55453795 None:intergenic 55.0%
TTGTCCCTCCTGGCAACACA+GGG - chr5_4:55453810-55453829 Msa0858190:intron 55.0%
GGAAGAAAGAGGTCTGGGAG+GGG + chr5_4:55453841-55453860 None:intergenic 55.0%
CTGGAAGAAAGAGGTCTGGG+AGG + chr5_4:55453843-55453862 None:intergenic 55.0%
CTCCCAGACCTCTTTCTTCC+AGG - chr5_4:55453841-55453860 Msa0858190:intron 55.0%
TGCTTGCCAAGCTAGGCATC+AGG - chr5_4:55454050-55454069 Msa0858190:intron 55.0%
AAAGGGCCTGATGCCTAGCT+TGG + chr5_4:55454059-55454078 None:intergenic 55.0%
CGTGTTTAGCCCTGAGGTTC+TGG - chr5_4:55454120-55454139 Msa0858190:intron 55.0%
CCCTGAGGCTGACAAGGTTA+AGG - chr5_4:55454306-55454325 Msa0858190:intron 55.0%
GGAGCCCGAAGAATCTGATG+AGG - chr5_4:55454529-55454548 Msa0858190:intron 55.0%
GTTGGAGCTCCTGCTCGTGT+TGG - chr5_4:55453764-55453783 Msa0858190:intron 60.0%
GTTGTCCCTCCTGGCAACAC+AGG - chr5_4:55453809-55453828 Msa0858190:intron 60.0%
CAAGCCCTGTGTTGCCAGGA+GGG + chr5_4:55453817-55453836 None:intergenic 60.0%
TCAAGCCCTGTGTTGCCAGG+AGG + chr5_4:55453818-55453837 None:intergenic 60.0%
GCTGCACTGCTTGCCAAGCT+AGG - chr5_4:55454043-55454062 Msa0858190:intron 60.0%
TGGCTCCGTGTTTAGCCCTG+AGG - chr5_4:55454114-55454133 Msa0858190:intron 60.0%
TGAGGTGCAGCAGCGAGTGT+AGG + chr5_4:55454226-55454245 None:intergenic 60.0%
!! AGCAGCAGAAGCATCGGCTG+GGG + chr5_4:55454477-55454496 None:intergenic 60.0%
!! CAGCAGCAGAAGCATCGGCT+GGG + chr5_4:55454478-55454497 None:intergenic 60.0%
! AGGCGCAGCAGCAGAAGCAT+CGG + chr5_4:55454483-55454502 None:intergenic 60.0%
TGCACCTGCTGCTGCCAATG+AGG - chr5_4:55454508-55454527 Msa0858190:intron 60.0%
GGGTCAAGCCCTGTGTTGCC+AGG + chr5_4:55453821-55453840 None:intergenic 65.0%
!! GCAGCAGCAGAAGCATCGGC+TGG + chr5_4:55454479-55454498 None:intergenic 65.0%
GGCTCCTCATTGGCAGCAGC+AGG + chr5_4:55454515-55454534 None:intergenic 65.0%
GCAGCAGCAGGTGCAGCAGC+AGG + chr5_4:55454503-55454522 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 55452025 55454866 55452025 ID=Msa0858190;Name=Msa0858190
chr5_4 mRNA 55452025 55454866 55452025 ID=Msa0858190-mRNA-1;Parent=Msa0858190;Name=Msa0858190-mRNA-1;_AED=0.06;_eAED=0.06;_QI=20|1|1|1|1|1|5|283|320
chr5_4 exon 55452025 55452451 55452025 ID=Msa0858190-mRNA-1:exon:17004;Parent=Msa0858190-mRNA-1
chr5_4 exon 55452552 55452944 55452552 ID=Msa0858190-mRNA-1:exon:17003;Parent=Msa0858190-mRNA-1
chr5_4 exon 55453029 55453127 55453029 ID=Msa0858190-mRNA-1:exon:17002;Parent=Msa0858190-mRNA-1
chr5_4 exon 55454062 55454130 55454062 ID=Msa0858190-mRNA-1:exon:17001;Parent=Msa0858190-mRNA-1
chr5_4 exon 55454589 55454866 55454589 ID=Msa0858190-mRNA-1:exon:17000;Parent=Msa0858190-mRNA-1
chr5_4 five_prime_UTR 55454847 55454866 55454847 ID=Msa0858190-mRNA-1:five_prime_utr;Parent=Msa0858190-mRNA-1
chr5_4 CDS 55454589 55454846 55454589 ID=Msa0858190-mRNA-1:cds;Parent=Msa0858190-mRNA-1
chr5_4 CDS 55454062 55454130 55454062 ID=Msa0858190-mRNA-1:cds;Parent=Msa0858190-mRNA-1
chr5_4 CDS 55453029 55453127 55453029 ID=Msa0858190-mRNA-1:cds;Parent=Msa0858190-mRNA-1
chr5_4 CDS 55452552 55452944 55452552 ID=Msa0858190-mRNA-1:cds;Parent=Msa0858190-mRNA-1
chr5_4 CDS 55452308 55452451 55452308 ID=Msa0858190-mRNA-1:cds;Parent=Msa0858190-mRNA-1
chr5_4 three_prime_UTR 55452025 55452307 55452025 ID=Msa0858190-mRNA-1:three_prime_utr;Parent=Msa0858190-mRNA-1
Gene Sequence

>Msa0858190

ATGGCACCAAAACCAACCAAAGCCGAGAAGAAACAAGCTTACGACGTTAAGCTTTGCCAGCTTCTCGATGAATTCACTCAGATTCTGATTGTTAATGCTGATAACGTTGGATCTAACCAACTTCAGAATATTCGTGGTGGTTTACGTGGTGATTCGGTTGTTCTTATGGGGAAGAATACTATGATGAAGAGATCTGTGAGGATGCACGCTGAGAAGACTGGGAACAATGCGTTTCTTAACCTTATCCCTCTCCTTGTTGGAAATGTGGGTTTGATTTTCACCAAAGGAGACCTCAAGGAGGTCAGTGAAGAGGTTGCCAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTTGTTGTCCCTCCTGGCAACACAGGGCTTGACCCCTCCCAGACCTCTTTCTTCCAGGTGCTCAACATTCCCACAAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTTGAACTCATCAAGAAGGGAGACAAGGTTGGCTCTTCTGAAGCTGCACTGCTTGCCAAGCTAGGCATCAGGCCCTTTTCATATGGACTTGTGGTCCTCTCTGTGTATGACAATGGCTCCGTGTTTAGCCCTGAGGTTCTGGATCTTACTGAGGATGACCTTGTTGCGAAGTTTGCCATTGGTGTCTCAATGGTTACTTCACTTTCTTTGGCCATCTCTTATCCTACACTCGCTGCTGCACCTCACATGTTCGTGAATGCATACAAGAATGTTCTTGCTGTTGCTGTCGCAACCGAGTATTCTTTCCCTGAGGCTGACAAGGTTAAGGAGTTCTTGAAGGACCCAAGTAAGTTTGCTGTAGCTGCTGTTGCTGCCCCAGCCGATGCTTCTGCTGCTGCGCCTGCTGCTGCACCTGCTGCTGCCAATGAGGAGCCCGAAGAATCTGATGAGGACATTGGTTTTGGTCTTTTTGGTGATGACTAG

Protein sequence

>Msa0858190

MAPKPTKAEKKQAYDVKLCQLLDEFTQILIVNADNVGSNQLQNIRGGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLVAKFAIGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVATEYSFPEADKVKEFLKDPSKFAVAAVAAPADASAAAPAAAPAAANEEPEESDEDIGFGLFGDD*