Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0858190 | XP_003616595.1 | 96.594 | 323 | 8 | 2 | 1 | 320 | 1 | 323 | 0.0 | 612 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0858190 | sp|P50346|RLA0_SOYBN | 86.520 | 319 | 41 | 1 | 1 | 317 | 1 | 319 | 0.0 | 528 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0858190 | G7KGX1 | 96.594 | 323 | 8 | 2 | 1 | 320 | 1 | 323 | 0.0 | 612 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0377610 | Msa0858190 | 0.807652 | 4.552770e-50 | -8.615850e-47 |
Msa0388540 | Msa0858190 | 0.808221 | 3.444861e-50 | -8.615850e-47 |
Msa0426820 | Msa0858190 | 0.855151 | 7.646061e-62 | -8.615850e-47 |
Msa0477670 | Msa0858190 | 0.816550 | 5.219642e-52 | -8.615850e-47 |
Msa0858190 | Msa0987570 | 0.829760 | 4.297132e-55 | -8.615850e-47 |
Msa0858190 | Msa0998890 | 0.804696 | 1.908387e-49 | -8.615850e-47 |
Msa0858190 | Msa1144630 | 0.810168 | 1.317858e-50 | -8.615850e-47 |
Msa0858190 | Msa1165700 | 0.807924 | 3.985231e-50 | -8.615850e-47 |
Msa0858190 | Msa1363930 | 0.810476 | 1.131271e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0858190 | MtrunA17_Chr5g0436791 | 96.594 | 323 | 8 | 2 | 1 | 320 | 1 | 323 | 0.0 | 612 |
Msa0858190 | MtrunA17_Chr3g0138631 | 90.093 | 323 | 29 | 1 | 1 | 320 | 1 | 323 | 0.0 | 551 |
Msa0858190 | MtrunA17_Chr7g0222411 | 67.308 | 104 | 33 | 1 | 11 | 113 | 7 | 110 | 2.65e-41 | 142 |
Msa0858190 | MtrunA17_Chr7g0272291 | 67.416 | 89 | 28 | 1 | 11 | 98 | 7 | 95 | 9.30e-34 | 119 |
Msa0858190 | MtrunA17_Chr3g0115971 | 54.630 | 108 | 27 | 2 | 63 | 169 | 8 | 94 | 1.30e-22 | 92.0 |
Msa0858190 | MtrunA17_Chr1g0168061 | 70.370 | 81 | 21 | 1 | 243 | 320 | 1 | 81 | 1.04e-19 | 82.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0858190 | AT2G40010.1 | 83.333 | 318 | 52 | 1 | 1 | 318 | 1 | 317 | 0.0 | 516 |
Msa0858190 | AT3G09200.1 | 88.364 | 275 | 32 | 0 | 4 | 278 | 3 | 277 | 3.30e-179 | 498 |
Msa0858190 | AT3G11250.1 | 88.000 | 275 | 33 | 0 | 4 | 278 | 3 | 277 | 2.67e-178 | 496 |
Msa0858190 | AT3G09200.2 | 77.455 | 275 | 29 | 1 | 4 | 278 | 3 | 244 | 4.23e-149 | 421 |
Find 114 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTGATTCGGTTGTTCTTA+TGG | 0.196398 | 5_4:-55454678 | Msa0858190:CDS |
AATGGTTACTTCACTTTCTT+TGG | 0.205850 | 5_4:-55452680 | Msa0858190:CDS |
AAATTTACTATCAAGTATTT+TGG | 0.220545 | 5_4:-55452277 | Msa0858190:three_prime_UTR |
CGTGTTTAGCCCTGAGGTTC+TGG | 0.240105 | 5_4:-55452749 | Msa0858190:CDS |
TTCTCGGCTTTGGTTGGTTT+TGG | 0.243035 | 5_4:+55454818 | None:intergenic |
CTCCCAGACCTCTTTCTTCC+AGG | 0.263863 | 5_4:-55453028 | Msa0858190:intron |
TCTGATGAGGACATTGGTTT+TGG | 0.301112 | 5_4:-55452327 | Msa0858190:CDS |
CCCTTCTTGATGAGTTCAAC+AGG | 0.305313 | 5_4:+55452871 | None:intergenic |
GGTGATTCGGTTGTTCTTAT+GGG | 0.317103 | 5_4:-55454677 | Msa0858190:CDS |
AGCTTGTTTCTTCTCGGCTT+TGG | 0.324216 | 5_4:+55454808 | None:intergenic |
GTCGTAAGCTTGTTTCTTCT+CGG | 0.324343 | 5_4:+55454802 | None:intergenic |
CATAATGGAAAATACAAAAT+AGG | 0.326591 | 5_4:+55452193 | None:intergenic |
GATAGAGTAGGCACAAGTTC+CGG | 0.327773 | 5_4:+55452110 | None:intergenic |
AATGTCCTCATCAGATTCTT+CGG | 0.355885 | 5_4:+55452335 | None:intergenic |
GACCTCCTTGAGGTCTCCTT+TGG | 0.367672 | 5_4:+55454086 | None:intergenic |
GCAGCTACAGCAAACTTACT+TGG | 0.386082 | 5_4:+55452426 | None:intergenic |
GGCTCCTCATTGGCAGCAGC+AGG | 0.392589 | 5_4:+55452357 | None:intergenic |
TGCTTGCCAAGCTAGGCATC+AGG | 0.396220 | 5_4:-55452819 | Msa0858190:CDS |
AGCTCCTGCTCGTGTTGGTT+TGG | 0.398892 | 5_4:-55453100 | Msa0858190:CDS |
TCCTTAACCTTGTCAGCCTC+AGG | 0.406863 | 5_4:+55452562 | None:intergenic |
ATAGAGTAGGCACAAGTTCC+GGG | 0.407425 | 5_4:+55452111 | None:intergenic |
CCCTGAGGCTGACAAGGTTA+AGG | 0.407662 | 5_4:-55452563 | Msa0858190:CDS |
GGGTCAAGCCCTGTGTTGCC+AGG | 0.414669 | 5_4:+55453051 | None:intergenic |
ATCACCAAAAGGAGTCATAA+TGG | 0.416393 | 5_4:+55452178 | None:intergenic |
AGATTCTTCGGGCTCCTCAT+TGG | 0.417156 | 5_4:+55452347 | None:intergenic |
ATGTCCTCATCAGATTCTTC+GGG | 0.421187 | 5_4:+55452336 | None:intergenic |
GGAGGGACAACAACATCAAT+TGG | 0.422188 | 5_4:+55453072 | None:intergenic |
AGGCGCAGCAGCAGAAGCAT+CGG | 0.424763 | 5_4:+55452389 | None:intergenic |
GCAGCAGCAGAAGCATCGGC+TGG | 0.425400 | 5_4:+55452393 | None:intergenic |
TGGTGGTTTACGTGGTGATT+CGG | 0.441475 | 5_4:-55454690 | Msa0858190:CDS |
GCTGCACTGCTTGCCAAGCT+AGG | 0.445861 | 5_4:-55452826 | Msa0858190:CDS |
AGTACCCTTGTTAATCTTTG+TGG | 0.446463 | 5_4:+55452909 | None:intergenic |
GCAGCAGCAGGTGCAGCAGC+AGG | 0.446792 | 5_4:+55452369 | None:intergenic |
GTACCCTTGTTAATCTTTGT+GGG | 0.449524 | 5_4:+55452910 | None:intergenic |
GACCACAAGTCCATATGAAA+AGG | 0.455518 | 5_4:+55452795 | None:intergenic |
AGGTAAGTTTACCTTGTACT+TGG | 0.456613 | 5_4:+55454050 | None:intergenic |
ATTGATGTTGTTGTCCCTCC+TGG | 0.461091 | 5_4:-55453069 | Msa0858190:CDS |
TCAGTAAGATCCAGAACCTC+AGG | 0.467312 | 5_4:+55452739 | None:intergenic |
AGCAGCAGAAGCATCGGCTG+GGG | 0.467961 | 5_4:+55452395 | None:intergenic |
CAAGGTTAAGGAGTTCTTGA+AGG | 0.472356 | 5_4:-55452551 | Msa0858190:intron |
GTTGTCCCTCCTGGCAACAC+AGG | 0.477212 | 5_4:-55453060 | Msa0858190:CDS |
TAGAATTACTCTATTAACTC+AGG | 0.478029 | 5_4:-55452040 | Msa0858190:three_prime_UTR |
GTTTGCCATTGGTGTCTCAA+TGG | 0.478230 | 5_4:-55452698 | Msa0858190:CDS |
TGTTTCTTCTCGGCTTTGGT+TGG | 0.480748 | 5_4:+55454812 | None:intergenic |
CTTCAAGATCGAACAAATGA+TGG | 0.488336 | 5_4:+55452236 | None:intergenic |
TGCACCTGCTGCTGCCAATG+AGG | 0.493341 | 5_4:-55452361 | Msa0858190:CDS |
GAGTGAATTCATCGAGAAGC+TGG | 0.498381 | 5_4:+55454768 | None:intergenic |
ACACCTGGAAGAAAGAGGTC+TGG | 0.501363 | 5_4:+55453025 | None:intergenic |
CACCACGAATATTCTGAAGT+TGG | 0.502245 | 5_4:+55454708 | None:intergenic |
AGGATGCACGCTGAGAAGAC+TGG | 0.512164 | 5_4:-55454626 | Msa0858190:CDS |
TCCATTGAAACAGGGAAATG+TGG | 0.512479 | 5_4:-55454121 | Msa0858190:intron |
TTCTTTCCCTGAGGCTGACA+AGG | 0.513735 | 5_4:-55452569 | Msa0858190:CDS |
CTTGTTGCGAAGTTTGCCAT+TGG | 0.515487 | 5_4:-55452709 | Msa0858190:CDS |
TTGTCCCTCCTGGCAACACA+GGG | 0.516892 | 5_4:-55453059 | Msa0858190:CDS |
GCAACCAAACCAACACGAGC+AGG | 0.521300 | 5_4:+55453096 | None:intergenic |
CAGCAGCAGAAGCATCGGCT+GGG | 0.524102 | 5_4:+55452394 | None:intergenic |
TTGATGATGAGCAAAATTGA+GGG | 0.524364 | 5_4:+55454846 | None:intergenic |
AAAGGGCCTGATGCCTAGCT+TGG | 0.525365 | 5_4:+55452813 | None:intergenic |
TTACAACAAGGAGAGGGATA+AGG | 0.527470 | 5_4:+55454585 | None:intergenic |
CAAGCCCTGTGTTGCCAGGA+GGG | 0.529456 | 5_4:+55453055 | None:intergenic |
GGAAGAAAGAGGTCTGGGAG+GGG | 0.529694 | 5_4:+55453031 | None:intergenic |
GGAAAACTTACAACAAGGAG+AGG | 0.531137 | 5_4:+55454578 | None:intergenic |
GTTGGAGCTCCTGCTCGTGT+TGG | 0.532062 | 5_4:-55453105 | Msa0858190:CDS |
CCCTGTTGAACTCATCAAGA+AGG | 0.543687 | 5_4:-55452872 | Msa0858190:CDS |
TGGAAGAAAGAGGTCTGGGA+GGG | 0.545188 | 5_4:+55453030 | None:intergenic |
AACCAACTTCAGAATATTCG+TGG | 0.545937 | 5_4:-55454710 | Msa0858190:CDS |
ACCACAAGTCCATATGAAAA+GGG | 0.552112 | 5_4:+55452796 | None:intergenic |
AATATTCGTGGTGGTTTACG+TGG | 0.555191 | 5_4:-55454698 | Msa0858190:CDS |
TCAAGCCCTGTGTTGCCAGG+AGG | 0.558382 | 5_4:+55453054 | None:intergenic |
GGATGCACGCTGAGAAGACT+GGG | 0.558969 | 5_4:-55454625 | Msa0858190:CDS |
CACCTGGAAGAAAGAGGTCT+GGG | 0.559601 | 5_4:+55453026 | None:intergenic |
ATTGATGATGAGCAAAATTG+AGG | 0.561511 | 5_4:+55454845 | None:intergenic |
GTGATTCGGTTGTTCTTATG+GGG | 0.567097 | 5_4:-55454676 | Msa0858190:CDS |
CCATTGAAACAGGGAAATGT+GGG | 0.567932 | 5_4:-55454120 | Msa0858190:intron |
AGCGAGTGTAGGATAAGAGA+TGG | 0.573155 | 5_4:+55452657 | None:intergenic |
ATTGTTAATGCTGATAACGT+TGG | 0.574787 | 5_4:-55454737 | Msa0858190:CDS |
TGAAGAGGTTGCCAAGTACA+AGG | 0.574954 | 5_4:-55454061 | Msa0858190:intron |
TTATAAGTAACATCACCAAA+AGG | 0.575160 | 5_4:+55452167 | None:intergenic |
CATTCCCACAAAGATTAACA+AGG | 0.575244 | 5_4:-55452914 | Msa0858190:CDS |
GCAAAGATTATAGATAGAGT+AGG | 0.581568 | 5_4:+55452098 | None:intergenic |
TGAGGTGCAGCAGCGAGTGT+AGG | 0.582500 | 5_4:+55452646 | None:intergenic |
AGAATTACTCTATTAACTCA+GGG | 0.582989 | 5_4:-55452039 | Msa0858190:three_prime_UTR |
CCTGTTGAACTCATCAAGAA+GGG | 0.586555 | 5_4:-55452871 | Msa0858190:CDS |
GAAGAATCTGATGAGGACAT+TGG | 0.587691 | 5_4:-55452333 | Msa0858190:CDS |
ATGACACACCTGGAAGAAAG+AGG | 0.591526 | 5_4:+55453020 | None:intergenic |
AGCCTCAGGGAAAGAATACT+CGG | 0.591842 | 5_4:+55452576 | None:intergenic |
CAGCTACAGCAAACTTACTT+GGG | 0.593694 | 5_4:+55452427 | None:intergenic |
CCTCAAGGAGGTCAGTGAAG+AGG | 0.593760 | 5_4:-55454076 | Msa0858190:CDS |
GTCCTCTCTGTGTATGACAA+TGG | 0.596487 | 5_4:-55452775 | Msa0858190:CDS |
CCTCTTCACTGACCTCCTTG+AGG | 0.596985 | 5_4:+55454076 | None:intergenic |
ATCAAGAAGGGAGACAAGGT+TGG | 0.597841 | 5_4:-55452859 | Msa0858190:CDS |
CAATGGCAAACTTCGCAACA+AGG | 0.607643 | 5_4:+55452710 | None:intergenic |
CCTTCTTGATGAGTTCAACA+GGG | 0.614444 | 5_4:+55452872 | None:intergenic |
CTGGAAGAAAGAGGTCTGGG+AGG | 0.617148 | 5_4:+55453029 | None:intergenic |
TTTCACCAAAGGAGACCTCA+AGG | 0.617367 | 5_4:-55454091 | Msa0858190:CDS |
CCTTAACCTTGTCAGCCTCA+GGG | 0.620363 | 5_4:+55452563 | None:intergenic |
AAAGATTAACAAGGGTACTG+TGG | 0.621923 | 5_4:-55452905 | Msa0858190:CDS |
ATTTGAATGACAATTGAACC+CGG | 0.629215 | 5_4:-55452129 | Msa0858190:three_prime_UTR |
TGAGGTTCTGGATCTTACTG+AGG | 0.633543 | 5_4:-55452737 | Msa0858190:CDS |
CAGAACCTCAGGGCTAAACA+CGG | 0.642065 | 5_4:+55452750 | None:intergenic |
TGGCTCCGTGTTTAGCCCTG+AGG | 0.648541 | 5_4:-55452755 | Msa0858190:CDS |
GAAAACTTACAACAAGGAGA+GGG | 0.650596 | 5_4:+55454579 | None:intergenic |
GGAGCCCGAAGAATCTGATG+AGG | 0.657492 | 5_4:-55452340 | Msa0858190:CDS |
CAACTTCAGAATATTCGTGG+TGG | 0.669173 | 5_4:-55454707 | Msa0858190:CDS |
ACTCATCAAGAAGGGAGACA+AGG | 0.673191 | 5_4:-55452863 | Msa0858190:CDS |
CAGTAAGATCCAGAACCTCA+GGG | 0.683560 | 5_4:+55452740 | None:intergenic |
AACCGAGTATTCTTTCCCTG+AGG | 0.686463 | 5_4:-55452578 | Msa0858190:CDS |
CTTCTTGATGAGTTCAACAG+GGG | 0.687686 | 5_4:+55452873 | None:intergenic |
AGTAACCATTGAGACACCAA+TGG | 0.697332 | 5_4:+55452693 | None:intergenic |
ATTCCCACAAAGATTAACAA+GGG | 0.700399 | 5_4:-55452913 | Msa0858190:CDS |
TATGCATTCACGAACATGTG+AGG | 0.724385 | 5_4:+55452628 | None:intergenic |
AGCCATTGTCATACACAGAG+AGG | 0.730101 | 5_4:+55452773 | None:intergenic |
CACCAAAGGAGACCTCAAGG+AGG | 0.756266 | 5_4:-55454088 | Msa0858190:CDS |
CTATGATGAAGAGATCTGTG+AGG | 0.762423 | 5_4:-55454646 | Msa0858190:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAATTTAGGATTTTAATTT+AGG | - | chr5_4:55452585-55452604 | Msa0858190:CDS | 10.0% |
!!! | TTTGATTTTTTTTTGATATT+TGG | - | chr5_4:55452630-55452649 | Msa0858190:CDS | 10.0% |
!! | ATTACTTTCAATAAATTATA+TGG | - | chr5_4:55453486-55453505 | Msa0858190:intron | 10.0% |
!!! | ATATTTAACTTTGAAATTTT+AGG | - | chr5_4:55453925-55453944 | Msa0858190:intron | 10.0% |
!!! | AATTCTGATTTTTTAGTTAT+TGG | - | chr5_4:55452449-55452468 | Msa0858190:intron | 15.0% |
!!! | TTTTTATCTGAAATATGTTA+AGG | - | chr5_4:55452500-55452519 | Msa0858190:intron | 15.0% |
!!! | ATTTTAATTTAGGTTGTTTT+TGG | - | chr5_4:55452595-55452614 | Msa0858190:CDS | 15.0% |
!!! | TTTTAATTTAGGTTGTTTTT+GGG | - | chr5_4:55452596-55452615 | Msa0858190:CDS | 15.0% |
!! | ATTTATTGAAATTAATTGGT+TGG | - | chr5_4:55452663-55452682 | Msa0858190:CDS | 15.0% |
!!! | TATAAAAGTAATTTGTGATA+TGG | - | chr5_4:55453053-55453072 | Msa0858190:CDS | 15.0% |
!!! | ATAAAAGTAATTTGTGATAT+GGG | - | chr5_4:55453054-55453073 | Msa0858190:CDS | 15.0% |
!!! | TTTTTTAATCAACATTTTGT+CGG | - | chr5_4:55453190-55453209 | Msa0858190:intron | 15.0% |
!!! | TAAACAGTTTTTAGTATTTA+TGG | - | chr5_4:55453246-55453265 | Msa0858190:intron | 15.0% |
!! | GTAGTAAAAAAATAACATTT+CGG | + | chr5_4:55453371-55453390 | None:intergenic | 15.0% |
!!! | ATTTAATTTATATCTAATGC+AGG | - | chr5_4:55453515-55453534 | Msa0858190:intron | 15.0% |
!!! | TTTAATTTATATCTAATGCA+GGG | - | chr5_4:55453516-55453535 | Msa0858190:intron | 15.0% |
!! | AATTTGTAGGAATAAAAATT+AGG | + | chr5_4:55453564-55453583 | None:intergenic | 15.0% |
!!! | AAATTTACTATCAAGTATTT+TGG | - | chr5_4:55454592-55454611 | Msa0858190:CDS | 15.0% |
!! | ATGATATTGAATGATGAATT+GGG | - | chr5_4:55452337-55452356 | Msa0858190:CDS | 20.0% |
!!! | TTACGATTTTATTTTGTCAA+GGG | - | chr5_4:55452408-55452427 | Msa0858190:CDS | 20.0% |
!! | TCGGTATTATTGAAAAATTT+AGG | - | chr5_4:55452572-55452591 | Msa0858190:CDS | 20.0% |
!! | TTTACATGACAATTACAAAA+AGG | + | chr5_4:55452842-55452861 | None:intergenic | 20.0% |
!! | AAAATCATAATGAAAAAGAG+TGG | + | chr5_4:55452909-55452928 | None:intergenic | 20.0% |
!! | TTTCATATGTTCTTCAATAT+AGG | - | chr5_4:55453218-55453237 | Msa0858190:intron | 20.0% |
!! | ACATAGAAAAAGATAACATA+AGG | + | chr5_4:55453283-55453302 | None:intergenic | 20.0% |
!! | TAAAGCAACTTAAATATTCA+TGG | - | chr5_4:55453397-55453416 | Msa0858190:intron | 20.0% |
!! | CTTTCAATAAATTATATGGT+TGG | - | chr5_4:55453490-55453509 | Msa0858190:intron | 20.0% |
!! | TTAATTTATATCTAATGCAG+GGG | - | chr5_4:55453517-55453536 | Msa0858190:intron | 20.0% |
!! | ATTCAATTGAAACAATTTGT+AGG | + | chr5_4:55453577-55453596 | None:intergenic | 20.0% |
!! | ACAAAAAAATAGAATAACCA+GGG | + | chr5_4:55453621-55453640 | None:intergenic | 20.0% |
!! | AACAAAAAAATAGAATAACC+AGG | + | chr5_4:55453622-55453641 | None:intergenic | 20.0% |
!!! | TATTCTATTTTTTTGTTCCT+TGG | - | chr5_4:55453625-55453644 | Msa0858190:intron | 20.0% |
!! | GGAAATATCATGTAATTAAT+AGG | + | chr5_4:55453729-55453748 | None:intergenic | 20.0% |
!! | ACATGATATTTCCTTTAAAT+TGG | - | chr5_4:55453736-55453755 | Msa0858190:intron | 20.0% |
!! | TATTTCCTTTAAATTGGAAT+AGG | - | chr5_4:55453742-55453761 | Msa0858190:intron | 20.0% |
!!! | CATAATGGAAAATACAAAAT+AGG | + | chr5_4:55454679-55454698 | None:intergenic | 20.0% |
! | AATGAACAAAAACTAGAGAT+TGG | + | chr5_4:55452315-55452334 | None:intergenic | 25.0% |
! | GATGATATTGAATGATGAAT+TGG | - | chr5_4:55452336-55452355 | Msa0858190:CDS | 25.0% |
!!! | GTTACGATTTTATTTTGTCA+AGG | - | chr5_4:55452407-55452426 | Msa0858190:CDS | 25.0% |
! | GTGAATCTTGAATGAATAAT+TGG | - | chr5_4:55452538-55452557 | Msa0858190:intron | 25.0% |
!!! | ATAATTGGTTAGTTCTGAAT+CGG | - | chr5_4:55452553-55452572 | Msa0858190:CDS | 25.0% |
!! | AATTAATTGGTTGGTTATAC+TGG | - | chr5_4:55452672-55452691 | Msa0858190:CDS | 25.0% |
! | TACTTAGTATTAAGTGTGTT+TGG | - | chr5_4:55452951-55452970 | Msa0858190:intron | 25.0% |
! | ACTTAGTATTAAGTGTGTTT+GGG | - | chr5_4:55452952-55452971 | Msa0858190:intron | 25.0% |
!! | GTTTGTTGAAAAGAATTTGA+TGG | - | chr5_4:55452980-55452999 | Msa0858190:intron | 25.0% |
! | GTGAAGTAAAAACTAAGTTA+AGG | - | chr5_4:55453096-55453115 | Msa0858190:CDS | 25.0% |
!! | TTGACTTATTTGAAACTGTT+TGG | - | chr5_4:55453139-55453158 | Msa0858190:intron | 25.0% |
!! | TGACTTATTTGAAACTGTTT+GGG | - | chr5_4:55453140-55453159 | Msa0858190:intron | 25.0% |
! | AAAAATTAGGAGCAAAACTT+TGG | + | chr5_4:55453551-55453570 | None:intergenic | 25.0% |
!!! | AATTTTAATCTTTGAAACCC+TGG | - | chr5_4:55453601-55453620 | Msa0858190:intron | 25.0% |
! | GTATATGAGTATTACTGTAA+TGG | - | chr5_4:55453884-55453903 | Msa0858190:intron | 25.0% |
! | AGATTAAGGAGTAAGAAATA+AGG | + | chr5_4:55454408-55454427 | None:intergenic | 25.0% |
! | TTATAAGTAACATCACCAAA+AGG | + | chr5_4:55454705-55454724 | None:intergenic | 25.0% |
! | TAGAATTACTCTATTAACTC+AGG | - | chr5_4:55454829-55454848 | Msa0858190:exon | 25.0% |
! | AGAATTACTCTATTAACTCA+GGG | - | chr5_4:55454830-55454849 | Msa0858190:exon | 25.0% |
! | TCAATTTTGCTCATCATCAA+TGG | - | chr5_4:55452026-55452045 | Msa0858190:three_prime_UTR | 30.0% |
! | ATTGTTAATGCTGATAACGT+TGG | - | chr5_4:55452132-55452151 | Msa0858190:three_prime_UTR | 30.0% |
AGATTGGAAAACTTACAACA+AGG | + | chr5_4:55452299-55452318 | None:intergenic | 30.0% | |
TGTAATTGTCATGTAAAGCT+TGG | - | chr5_4:55452845-55452864 | Msa0858190:CDS | 30.0% | |
! | TATGGGTTTTCTTGATAAAC+TGG | - | chr5_4:55453071-55453090 | Msa0858190:CDS | 30.0% |
TCCTTTAAATTGGAATAGGT+TGG | - | chr5_4:55453746-55453765 | Msa0858190:intron | 30.0% | |
TCCAACCTATTCCAATTTAA+AGG | + | chr5_4:55453750-55453769 | None:intergenic | 30.0% | |
CAGTAATACTCATATACCAA+TGG | + | chr5_4:55453881-55453900 | None:intergenic | 30.0% | |
ATTCCCACAAAGATTAACAA+GGG | - | chr5_4:55453956-55453975 | Msa0858190:intron | 30.0% | |
AATGGTTACTTCACTTTCTT+TGG | - | chr5_4:55454189-55454208 | Msa0858190:intron | 30.0% | |
TCCTTAATCTTGTATAATGC+AGG | - | chr5_4:55454418-55454437 | Msa0858190:intron | 30.0% | |
TCCTGCATTATACAAGATTA+AGG | + | chr5_4:55454422-55454441 | None:intergenic | 30.0% | |
! | TTTTCCATTATGACTCCTTT+TGG | - | chr5_4:55454687-55454706 | Msa0858190:CDS | 30.0% |
ATTTGAATGACAATTGAACC+CGG | - | chr5_4:55454740-55454759 | Msa0858190:CDS | 30.0% | |
GCAAAGATTATAGATAGAGT+AGG | + | chr5_4:55454774-55454793 | None:intergenic | 30.0% | |
AACCAACTTCAGAATATTCG+TGG | - | chr5_4:55452159-55452178 | Msa0858190:three_prime_UTR | 35.0% | |
GAAAACTTACAACAAGGAGA+GGG | + | chr5_4:55452293-55452312 | None:intergenic | 35.0% | |
AGGTAAGTTTACCTTGTACT+TGG | + | chr5_4:55452822-55452841 | None:intergenic | 35.0% | |
!! | TACACTAAAAGCATTGCGTA+TGG | + | chr5_4:55452883-55452902 | None:intergenic | 35.0% |
TAGTATTAAGTGTGTTTGGG+TGG | - | chr5_4:55452955-55452974 | Msa0858190:intron | 35.0% | |
TCAAATAAGTCAATCCAGAC+AGG | + | chr5_4:55453132-55453151 | None:intergenic | 35.0% | |
TATGACTTCCAAACACATGT+TGG | - | chr5_4:55453432-55453451 | Msa0858190:intron | 35.0% | |
TTGTGTTTGTTTAGATCCTG+TGG | + | chr5_4:55453461-55453480 | None:intergenic | 35.0% | |
AATGAGCATATTGACAACCA+AGG | + | chr5_4:55453645-55453664 | None:intergenic | 35.0% | |
CATTCCCACAAAGATTAACA+AGG | - | chr5_4:55453955-55453974 | Msa0858190:intron | 35.0% | |
GTACCCTTGTTAATCTTTGT+GGG | + | chr5_4:55453962-55453981 | None:intergenic | 35.0% | |
AGTACCCTTGTTAATCTTTG+TGG | + | chr5_4:55453963-55453982 | None:intergenic | 35.0% | |
!! | AAAGATTAACAAGGGTACTG+TGG | - | chr5_4:55453964-55453983 | Msa0858190:intron | 35.0% |
ACCACAAGTCCATATGAAAA+GGG | + | chr5_4:55454076-55454095 | None:intergenic | 35.0% | |
! | TGACTTGTCTTTACTTGTCT+TGG | - | chr5_4:55454344-55454363 | Msa0858190:intron | 35.0% |
AATGTCCTCATCAGATTCTT+CGG | + | chr5_4:55454537-55454556 | None:intergenic | 35.0% | |
!!! | GACATTGGTTTTGGTCTTTT+TGG | - | chr5_4:55454551-55454570 | Msa0858190:intron | 35.0% |
CTTCAAGATCGAACAAATGA+TGG | + | chr5_4:55454636-55454655 | None:intergenic | 35.0% | |
ATCACCAAAAGGAGTCATAA+TGG | + | chr5_4:55454694-55454713 | None:intergenic | 35.0% | |
! | GTCGTAAGCTTGTTTCTTCT+CGG | + | chr5_4:55452070-55452089 | None:intergenic | 40.0% |
!! | CACCACGAATATTCTGAAGT+TGG | + | chr5_4:55452164-55452183 | None:intergenic | 40.0% |
CAACTTCAGAATATTCGTGG+TGG | - | chr5_4:55452162-55452181 | Msa0858190:three_prime_UTR | 40.0% | |
AATATTCGTGGTGGTTTACG+TGG | - | chr5_4:55452171-55452190 | Msa0858190:three_prime_UTR | 40.0% | |
!! | TGGTGATTCGGTTGTTCTTA+TGG | - | chr5_4:55452191-55452210 | Msa0858190:three_prime_UTR | 40.0% |
!! | GGTGATTCGGTTGTTCTTAT+GGG | - | chr5_4:55452192-55452211 | Msa0858190:three_prime_UTR | 40.0% |
!! | GTGATTCGGTTGTTCTTATG+GGG | - | chr5_4:55452193-55452212 | Msa0858190:three_prime_UTR | 40.0% |
CTATGATGAAGAGATCTGTG+AGG | - | chr5_4:55452223-55452242 | Msa0858190:three_prime_UTR | 40.0% | |
TTACAACAAGGAGAGGGATA+AGG | + | chr5_4:55452287-55452306 | None:intergenic | 40.0% | |
GGAAAACTTACAACAAGGAG+AGG | + | chr5_4:55452294-55452313 | None:intergenic | 40.0% | |
TTTCCCTGTTTCAATGGACA+TGG | + | chr5_4:55452746-55452765 | None:intergenic | 40.0% | |
TCCATTGAAACAGGGAAATG+TGG | - | chr5_4:55452748-55452767 | Msa0858190:CDS | 40.0% | |
CCATTGAAACAGGGAAATGT+GGG | - | chr5_4:55452749-55452768 | Msa0858190:CDS | 40.0% | |
!! | GTGGGTTTGATTTTCACCAA+AGG | - | chr5_4:55452767-55452786 | Msa0858190:CDS | 40.0% |
! | GGGTTTTCTTGATAAACTGG+TGG | - | chr5_4:55453074-55453093 | Msa0858190:CDS | 40.0% |
CTTCTTGATGAGTTCAACAG+GGG | + | chr5_4:55453999-55454018 | None:intergenic | 40.0% | |
CCTTCTTGATGAGTTCAACA+GGG | + | chr5_4:55454000-55454019 | None:intergenic | 40.0% | |
CCTGTTGAACTCATCAAGAA+GGG | - | chr5_4:55453998-55454017 | Msa0858190:intron | 40.0% | |
GACCACAAGTCCATATGAAA+AGG | + | chr5_4:55454077-55454096 | None:intergenic | 40.0% | |
AGTAACCATTGAGACACCAA+TGG | + | chr5_4:55454179-55454198 | None:intergenic | 40.0% | |
TATGCATTCACGAACATGTG+AGG | + | chr5_4:55454244-55454263 | None:intergenic | 40.0% | |
CAAGGTTAAGGAGTTCTTGA+AGG | - | chr5_4:55454318-55454337 | Msa0858190:intron | 40.0% | |
CAGCTACAGCAAACTTACTT+GGG | + | chr5_4:55454445-55454464 | None:intergenic | 40.0% | |
ATGTCCTCATCAGATTCTTC+GGG | + | chr5_4:55454536-55454555 | None:intergenic | 40.0% | |
GAAGAATCTGATGAGGACAT+TGG | - | chr5_4:55454536-55454555 | Msa0858190:intron | 40.0% | |
!!! | TCTGATGAGGACATTGGTTT+TGG | - | chr5_4:55454542-55454561 | Msa0858190:intron | 40.0% |
!!! | TTCTCGGCTTTGGTTGGTTT+TGG | + | chr5_4:55452054-55452073 | None:intergenic | 45.0% |
! | TGTTTCTTCTCGGCTTTGGT+TGG | + | chr5_4:55452060-55452079 | None:intergenic | 45.0% |
! | AGCTTGTTTCTTCTCGGCTT+TGG | + | chr5_4:55452064-55452083 | None:intergenic | 45.0% |
GAGTGAATTCATCGAGAAGC+TGG | + | chr5_4:55452104-55452123 | None:intergenic | 45.0% | |
TGGTGGTTTACGTGGTGATT+CGG | - | chr5_4:55452179-55452198 | Msa0858190:three_prime_UTR | 45.0% | |
AGTGCCATGTCCATTGAAAC+AGG | - | chr5_4:55452739-55452758 | Msa0858190:CDS | 45.0% | |
GTGCCATGTCCATTGAAACA+GGG | - | chr5_4:55452740-55452759 | Msa0858190:CDS | 45.0% | |
CCCACATTTCCCTGTTTCAA+TGG | + | chr5_4:55452752-55452771 | None:intergenic | 45.0% | |
TTTCACCAAAGGAGACCTCA+AGG | - | chr5_4:55452778-55452797 | Msa0858190:CDS | 45.0% | |
TGAAGAGGTTGCCAAGTACA+AGG | - | chr5_4:55452808-55452827 | Msa0858190:CDS | 45.0% | |
AAGGTCTTCATACTCCTGTC+TGG | - | chr5_4:55453115-55453134 | Msa0858190:intron | 45.0% | |
TGTGGAGACCAACATGTGTT+TGG | + | chr5_4:55453443-55453462 | None:intergenic | 45.0% | |
! | AAACACATGTTGGTCTCCAC+AGG | - | chr5_4:55453442-55453461 | Msa0858190:intron | 45.0% |
TATATCTAATGCAGGGGCAG+TGG | - | chr5_4:55453523-55453542 | Msa0858190:intron | 45.0% | |
ATATCTAATGCAGGGGCAGT+GGG | - | chr5_4:55453524-55453543 | Msa0858190:intron | 45.0% | |
GGAGGGACAACAACATCAAT+TGG | + | chr5_4:55453800-55453819 | None:intergenic | 45.0% | |
ATTGATGTTGTTGTCCCTCC+TGG | - | chr5_4:55453800-55453819 | Msa0858190:intron | 45.0% | |
ATGACACACCTGGAAGAAAG+AGG | + | chr5_4:55453852-55453871 | None:intergenic | 45.0% | |
CCCTGTTGAACTCATCAAGA+AGG | - | chr5_4:55453997-55454016 | Msa0858190:intron | 45.0% | |
CCCTTCTTGATGAGTTCAAC+AGG | + | chr5_4:55454001-55454020 | None:intergenic | 45.0% | |
ACTCATCAAGAAGGGAGACA+AGG | - | chr5_4:55454006-55454025 | Msa0858190:intron | 45.0% | |
ATCAAGAAGGGAGACAAGGT+TGG | - | chr5_4:55454010-55454029 | Msa0858190:intron | 45.0% | |
! | GCCCTTTTCATATGGACTTG+TGG | - | chr5_4:55454072-55454091 | Msa0858190:CDS | 45.0% |
GTCCTCTCTGTGTATGACAA+TGG | - | chr5_4:55454094-55454113 | Msa0858190:CDS | 45.0% | |
AGCCATTGTCATACACAGAG+AGG | + | chr5_4:55454099-55454118 | None:intergenic | 45.0% | |
CAGTAAGATCCAGAACCTCA+GGG | + | chr5_4:55454132-55454151 | None:intergenic | 45.0% | |
TCAGTAAGATCCAGAACCTC+AGG | + | chr5_4:55454133-55454152 | None:intergenic | 45.0% | |
!! | TGAGGTTCTGGATCTTACTG+AGG | - | chr5_4:55454132-55454151 | Msa0858190:intron | 45.0% |
CAATGGCAAACTTCGCAACA+AGG | + | chr5_4:55454162-55454181 | None:intergenic | 45.0% | |
CTTGTTGCGAAGTTTGCCAT+TGG | - | chr5_4:55454160-55454179 | Msa0858190:intron | 45.0% | |
! | GTTTGCCATTGGTGTCTCAA+TGG | - | chr5_4:55454171-55454190 | Msa0858190:intron | 45.0% |
AGCGAGTGTAGGATAAGAGA+TGG | + | chr5_4:55454215-55454234 | None:intergenic | 45.0% | |
AACCGAGTATTCTTTCCCTG+AGG | - | chr5_4:55454291-55454310 | Msa0858190:intron | 45.0% | |
AGCCTCAGGGAAAGAATACT+CGG | + | chr5_4:55454296-55454315 | None:intergenic | 45.0% | |
GCAGCTACAGCAAACTTACT+TGG | + | chr5_4:55454446-55454465 | None:intergenic | 45.0% | |
ATAGAGTAGGCACAAGTTCC+GGG | + | chr5_4:55454761-55454780 | None:intergenic | 45.0% | |
GATAGAGTAGGCACAAGTTC+CGG | + | chr5_4:55454762-55454781 | None:intergenic | 45.0% | |
!! | TAATATTTATTGAAATTAAT+TGG | - | chr5_4:55452659-55452678 | Msa0858190:CDS | 5.0% |
TGGAAGAAAGAGGTCTGGGA+GGG | + | chr5_4:55453842-55453861 | None:intergenic | 50.0% | |
CACCTGGAAGAAAGAGGTCT+GGG | + | chr5_4:55453846-55453865 | None:intergenic | 50.0% | |
ACACCTGGAAGAAAGAGGTC+TGG | + | chr5_4:55453847-55453866 | None:intergenic | 50.0% | |
ATGGAGCAAGATGACACACC+TGG | + | chr5_4:55453862-55453881 | None:intergenic | 50.0% | |
GGTGTGTCATCTTGCTCCAT+TGG | - | chr5_4:55453862-55453881 | Msa0858190:intron | 50.0% | |
! | GGCATCAGGCCCTTTTCATA+TGG | - | chr5_4:55454064-55454083 | Msa0858190:CDS | 50.0% |
CAGAACCTCAGGGCTAAACA+CGG | + | chr5_4:55454122-55454141 | None:intergenic | 50.0% | |
TTCTTTCCCTGAGGCTGACA+AGG | - | chr5_4:55454300-55454319 | Msa0858190:intron | 50.0% | |
CCTTAACCTTGTCAGCCTCA+GGG | + | chr5_4:55454309-55454328 | None:intergenic | 50.0% | |
TCCTTAACCTTGTCAGCCTC+AGG | + | chr5_4:55454310-55454329 | None:intergenic | 50.0% | |
AGATTCTTCGGGCTCCTCAT+TGG | + | chr5_4:55454525-55454544 | None:intergenic | 50.0% | |
AGGATGCACGCTGAGAAGAC+TGG | - | chr5_4:55452243-55452262 | Msa0858190:three_prime_UTR | 55.0% | |
GGATGCACGCTGAGAAGACT+GGG | - | chr5_4:55452244-55452263 | Msa0858190:three_prime_UTR | 55.0% | |
CACCAAAGGAGACCTCAAGG+AGG | - | chr5_4:55452781-55452800 | Msa0858190:CDS | 55.0% | |
GACCTCCTTGAGGTCTCCTT+TGG | + | chr5_4:55452786-55452805 | None:intergenic | 55.0% | |
CCTCTTCACTGACCTCCTTG+AGG | + | chr5_4:55452796-55452815 | None:intergenic | 55.0% | |
CCTCAAGGAGGTCAGTGAAG+AGG | - | chr5_4:55452793-55452812 | Msa0858190:CDS | 55.0% | |
!! | AGCTCCTGCTCGTGTTGGTT+TGG | - | chr5_4:55453769-55453788 | Msa0858190:intron | 55.0% |
GCAACCAAACCAACACGAGC+AGG | + | chr5_4:55453776-55453795 | None:intergenic | 55.0% | |
TTGTCCCTCCTGGCAACACA+GGG | - | chr5_4:55453810-55453829 | Msa0858190:intron | 55.0% | |
GGAAGAAAGAGGTCTGGGAG+GGG | + | chr5_4:55453841-55453860 | None:intergenic | 55.0% | |
CTGGAAGAAAGAGGTCTGGG+AGG | + | chr5_4:55453843-55453862 | None:intergenic | 55.0% | |
CTCCCAGACCTCTTTCTTCC+AGG | - | chr5_4:55453841-55453860 | Msa0858190:intron | 55.0% | |
TGCTTGCCAAGCTAGGCATC+AGG | - | chr5_4:55454050-55454069 | Msa0858190:intron | 55.0% | |
AAAGGGCCTGATGCCTAGCT+TGG | + | chr5_4:55454059-55454078 | None:intergenic | 55.0% | |
CGTGTTTAGCCCTGAGGTTC+TGG | - | chr5_4:55454120-55454139 | Msa0858190:intron | 55.0% | |
CCCTGAGGCTGACAAGGTTA+AGG | - | chr5_4:55454306-55454325 | Msa0858190:intron | 55.0% | |
GGAGCCCGAAGAATCTGATG+AGG | - | chr5_4:55454529-55454548 | Msa0858190:intron | 55.0% | |
GTTGGAGCTCCTGCTCGTGT+TGG | - | chr5_4:55453764-55453783 | Msa0858190:intron | 60.0% | |
GTTGTCCCTCCTGGCAACAC+AGG | - | chr5_4:55453809-55453828 | Msa0858190:intron | 60.0% | |
CAAGCCCTGTGTTGCCAGGA+GGG | + | chr5_4:55453817-55453836 | None:intergenic | 60.0% | |
TCAAGCCCTGTGTTGCCAGG+AGG | + | chr5_4:55453818-55453837 | None:intergenic | 60.0% | |
GCTGCACTGCTTGCCAAGCT+AGG | - | chr5_4:55454043-55454062 | Msa0858190:intron | 60.0% | |
TGGCTCCGTGTTTAGCCCTG+AGG | - | chr5_4:55454114-55454133 | Msa0858190:intron | 60.0% | |
TGAGGTGCAGCAGCGAGTGT+AGG | + | chr5_4:55454226-55454245 | None:intergenic | 60.0% | |
!! | AGCAGCAGAAGCATCGGCTG+GGG | + | chr5_4:55454477-55454496 | None:intergenic | 60.0% |
!! | CAGCAGCAGAAGCATCGGCT+GGG | + | chr5_4:55454478-55454497 | None:intergenic | 60.0% |
! | AGGCGCAGCAGCAGAAGCAT+CGG | + | chr5_4:55454483-55454502 | None:intergenic | 60.0% |
TGCACCTGCTGCTGCCAATG+AGG | - | chr5_4:55454508-55454527 | Msa0858190:intron | 60.0% | |
GGGTCAAGCCCTGTGTTGCC+AGG | + | chr5_4:55453821-55453840 | None:intergenic | 65.0% | |
!! | GCAGCAGCAGAAGCATCGGC+TGG | + | chr5_4:55454479-55454498 | None:intergenic | 65.0% |
GGCTCCTCATTGGCAGCAGC+AGG | + | chr5_4:55454515-55454534 | None:intergenic | 65.0% | |
GCAGCAGCAGGTGCAGCAGC+AGG | + | chr5_4:55454503-55454522 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_4 | gene | 55452025 | 55454866 | 55452025 | ID=Msa0858190;Name=Msa0858190 |
chr5_4 | mRNA | 55452025 | 55454866 | 55452025 | ID=Msa0858190-mRNA-1;Parent=Msa0858190;Name=Msa0858190-mRNA-1;_AED=0.06;_eAED=0.06;_QI=20|1|1|1|1|1|5|283|320 |
chr5_4 | exon | 55452025 | 55452451 | 55452025 | ID=Msa0858190-mRNA-1:exon:17004;Parent=Msa0858190-mRNA-1 |
chr5_4 | exon | 55452552 | 55452944 | 55452552 | ID=Msa0858190-mRNA-1:exon:17003;Parent=Msa0858190-mRNA-1 |
chr5_4 | exon | 55453029 | 55453127 | 55453029 | ID=Msa0858190-mRNA-1:exon:17002;Parent=Msa0858190-mRNA-1 |
chr5_4 | exon | 55454062 | 55454130 | 55454062 | ID=Msa0858190-mRNA-1:exon:17001;Parent=Msa0858190-mRNA-1 |
chr5_4 | exon | 55454589 | 55454866 | 55454589 | ID=Msa0858190-mRNA-1:exon:17000;Parent=Msa0858190-mRNA-1 |
chr5_4 | five_prime_UTR | 55454847 | 55454866 | 55454847 | ID=Msa0858190-mRNA-1:five_prime_utr;Parent=Msa0858190-mRNA-1 |
chr5_4 | CDS | 55454589 | 55454846 | 55454589 | ID=Msa0858190-mRNA-1:cds;Parent=Msa0858190-mRNA-1 |
chr5_4 | CDS | 55454062 | 55454130 | 55454062 | ID=Msa0858190-mRNA-1:cds;Parent=Msa0858190-mRNA-1 |
chr5_4 | CDS | 55453029 | 55453127 | 55453029 | ID=Msa0858190-mRNA-1:cds;Parent=Msa0858190-mRNA-1 |
chr5_4 | CDS | 55452552 | 55452944 | 55452552 | ID=Msa0858190-mRNA-1:cds;Parent=Msa0858190-mRNA-1 |
chr5_4 | CDS | 55452308 | 55452451 | 55452308 | ID=Msa0858190-mRNA-1:cds;Parent=Msa0858190-mRNA-1 |
chr5_4 | three_prime_UTR | 55452025 | 55452307 | 55452025 | ID=Msa0858190-mRNA-1:three_prime_utr;Parent=Msa0858190-mRNA-1 |
Gene Sequence |
Protein sequence |