AlfalfaGEDB | Msa0858190

M. sativa cultivar zhongmu-4 / Msa0858190

KEGG: K02941
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0070013 GO:0071944 GO:1990904
PFAM: PF00466.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858190	XP_003616595.1	96.594	323	8	2	1	320	1	323	0.0	612

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858190	sp\|P50346\|RLA0_SOYBN	86.520	319	41	1	1	317	1	319	0.0	528

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858190	G7KGX1	96.594	323	8	2	1	320	1	323	0.0	612

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0377610	Msa0858190	0.807652	4.552770e-50	-8.615850e-47
Msa0388540	Msa0858190	0.808221	3.444861e-50	-8.615850e-47
Msa0426820	Msa0858190	0.855151	7.646061e-62	-8.615850e-47
Msa0477670	Msa0858190	0.816550	5.219642e-52	-8.615850e-47
Msa0858190	Msa0987570	0.829760	4.297132e-55	-8.615850e-47
Msa0858190	Msa0998890	0.804696	1.908387e-49	-8.615850e-47
Msa0858190	Msa1144630	0.810168	1.317858e-50	-8.615850e-47
Msa0858190	Msa1165700	0.807924	3.985231e-50	-8.615850e-47
Msa0858190	Msa1363930	0.810476	1.131271e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858190	MtrunA17_Chr5g0436791	96.594	323	8	2	1	320	1	323	0.0	612
Msa0858190	MtrunA17_Chr3g0138631	90.093	323	29	1	1	320	1	323	0.0	551
Msa0858190	MtrunA17_Chr7g0222411	67.308	104	33	1	11	113	7	110	2.65e-41	142
Msa0858190	MtrunA17_Chr7g0272291	67.416	89	28	1	11	98	7	95	9.30e-34	119
Msa0858190	MtrunA17_Chr3g0115971	54.630	108	27	2	63	169	8	94	1.30e-22	92.0
Msa0858190	MtrunA17_Chr1g0168061	70.370	81	21	1	243	320	1	81	1.04e-19	82.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0858190	AT2G40010.1	83.333	318	52	1	1	318	1	317	0.0	516
Msa0858190	AT3G09200.1	88.364	275	32	0	4	278	3	277	3.30e-179	498
Msa0858190	AT3G11250.1	88.000	275	33	0	4	278	3	277	2.67e-178	496
Msa0858190	AT3G09200.2	77.455	275	29	1	4	278	3	244	4.23e-149	421

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Find 114 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTAACAAGGGTACTG+TGG	0.621923	5_4:-55452905	Msa0858190:CDS
AAAGGGCCTGATGCCTAGCT+TGG	0.525365	5_4:+55452813	None:intergenic
AAATTTACTATCAAGTATTT+TGG	0.220545	5_4:-55452277	Msa0858190:three_prime_UTR
AACCAACTTCAGAATATTCG+TGG	0.545937	5_4:-55454710	Msa0858190:CDS
AACCGAGTATTCTTTCCCTG+AGG	0.686463	5_4:-55452578	Msa0858190:CDS
AATATTCGTGGTGGTTTACG+TGG	0.555191	5_4:-55454698	Msa0858190:CDS
AATGGTTACTTCACTTTCTT+TGG	0.205850	5_4:-55452680	Msa0858190:CDS
AATGTCCTCATCAGATTCTT+CGG	0.355885	5_4:+55452335	None:intergenic
ACACCTGGAAGAAAGAGGTC+TGG	0.501363	5_4:+55453025	None:intergenic
ACCACAAGTCCATATGAAAA+GGG	0.552112	5_4:+55452796	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATTGGAAAACTTACAACA+AGG	+	chr5_4:55452299-55452318	None:intergenic	30.0%
TGTAATTGTCATGTAAAGCT+TGG	-	chr5_4:55452845-55452864	Msa0858190:CDS	30.0%
TCCTTTAAATTGGAATAGGT+TGG	-	chr5_4:55453746-55453765	Msa0858190:intron	30.0%
TCCAACCTATTCCAATTTAA+AGG	+	chr5_4:55453750-55453769	None:intergenic	30.0%
CAGTAATACTCATATACCAA+TGG	+	chr5_4:55453881-55453900	None:intergenic	30.0%
ATTCCCACAAAGATTAACAA+GGG	-	chr5_4:55453956-55453975	Msa0858190:intron	30.0%
AATGGTTACTTCACTTTCTT+TGG	-	chr5_4:55454189-55454208	Msa0858190:intron	30.0%
TCCTTAATCTTGTATAATGC+AGG	-	chr5_4:55454418-55454437	Msa0858190:intron	30.0%
TCCTGCATTATACAAGATTA+AGG	+	chr5_4:55454422-55454441	None:intergenic	30.0%
ATTTGAATGACAATTGAACC+CGG	-	chr5_4:55454740-55454759	Msa0858190:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	55452025	55454866	55452025	ID=Msa0858190;Name=Msa0858190
chr5_4	mRNA	55452025	55454866	55452025	ID=Msa0858190-mRNA-1;Parent=Msa0858190;Name=Msa0858190-mRNA-1;_AED=0.06;_eAED=0.06;_QI=20\|1\|1\|1\|1\|1\|5\|283\|320
chr5_4	exon	55452025	55452451	55452025	ID=Msa0858190-mRNA-1:exon:17004;Parent=Msa0858190-mRNA-1
chr5_4	exon	55452552	55452944	55452552	ID=Msa0858190-mRNA-1:exon:17003;Parent=Msa0858190-mRNA-1
chr5_4	exon	55453029	55453127	55453029	ID=Msa0858190-mRNA-1:exon:17002;Parent=Msa0858190-mRNA-1
chr5_4	exon	55454062	55454130	55454062	ID=Msa0858190-mRNA-1:exon:17001;Parent=Msa0858190-mRNA-1
chr5_4	exon	55454589	55454866	55454589	ID=Msa0858190-mRNA-1:exon:17000;Parent=Msa0858190-mRNA-1
chr5_4	five_prime_UTR	55454847	55454866	55454847	ID=Msa0858190-mRNA-1:five_prime_utr;Parent=Msa0858190-mRNA-1
chr5_4	CDS	55454589	55454846	55454589	ID=Msa0858190-mRNA-1:cds;Parent=Msa0858190-mRNA-1
chr5_4	CDS	55454062	55454130	55454062	ID=Msa0858190-mRNA-1:cds;Parent=Msa0858190-mRNA-1
chr5_4	CDS	55453029	55453127	55453029	ID=Msa0858190-mRNA-1:cds;Parent=Msa0858190-mRNA-1
chr5_4	CDS	55452552	55452944	55452552	ID=Msa0858190-mRNA-1:cds;Parent=Msa0858190-mRNA-1
chr5_4	CDS	55452308	55452451	55452308	ID=Msa0858190-mRNA-1:cds;Parent=Msa0858190-mRNA-1
chr5_4	three_prime_UTR	55452025	55452307	55452025	ID=Msa0858190-mRNA-1:three_prime_utr;Parent=Msa0858190-mRNA-1

Gene Sequence

>Msa0858190

ATGGCACCAAAACCAACCAAAGCCGAGAAGAAACAAGCTTACGACGTTAAGCTTTGCCAGCTTCTCGATGAATTCACTCAGATTCTGATTGTTAATGCTGATAACGTTGGATCTAACCAACTTCAGAATATTCGTGGTGGTTTACGTGGTGATTCGGTTGTTCTTATGGGGAAGAATACTATGATGAAGAGATCTGTGAGGATGCACGCTGAGAAGACTGGGAACAATGCGTTTCTTAACCTTATCCCTCTCCTTGTTGGAAATGTGGGTTTGATTTTCACCAAAGGAGACCTCAAGGAGGTCAGTGAAGAGGTTGCCAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTTGTTGTCCCTCCTGGCAACACAGGGCTTGACCCCTCCCAGACCTCTTTCTTCCAGGTGCTCAACATTCCCACAAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTTGAACTCATCAAGAAGGGAGACAAGGTTGGCTCTTCTGAAGCTGCACTGCTTGCCAAGCTAGGCATCAGGCCCTTTTCATATGGACTTGTGGTCCTCTCTGTGTATGACAATGGCTCCGTGTTTAGCCCTGAGGTTCTGGATCTTACTGAGGATGACCTTGTTGCGAAGTTTGCCATTGGTGTCTCAATGGTTACTTCACTTTCTTTGGCCATCTCTTATCCTACACTCGCTGCTGCACCTCACATGTTCGTGAATGCATACAAGAATGTTCTTGCTGTTGCTGTCGCAACCGAGTATTCTTTCCCTGAGGCTGACAAGGTTAAGGAGTTCTTGAAGGACCCAAGTAAGTTTGCTGTAGCTGCTGTTGCTGCCCCAGCCGATGCTTCTGCTGCTGCGCCTGCTGCTGCACCTGCTGCTGCCAATGAGGAGCCCGAAGAATCTGATGAGGACATTGGTTTTGGTCTTTTTGGTGATGACTAG

Protein sequence

>Msa0858190

MAPKPTKAEKKQAYDVKLCQLLDEFTQILIVNADNVGSNQLQNIRGGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLVAKFAIGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVATEYSFPEADKVKEFLKDPSKFAVAAVAAPADASAAAPAAAPAAANEEPEESDEDIGFGLFGDD*