Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987570 | XP_013452021.1 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 4.42e-108 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987570 | sp|P34788|RS18_ARATH | 91.447 | 152 | 13 | 0 | 1 | 152 | 1 | 152 | 1.96e-103 | 295 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987570 | G7IEW7 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 2.11e-108 | 314 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026270 | Msa0987570 | 0.811473 | 6.878919e-51 | -8.615850e-47 |
| Msa0042510 | Msa0987570 | 0.860681 | 1.742918e-63 | -8.615850e-47 |
| Msa0079560 | Msa0987570 | 0.856392 | 3.319454e-62 | -8.615850e-47 |
| Msa0621190 | Msa0987570 | 0.847143 | 1.392947e-59 | -8.615850e-47 |
| Msa0656450 | Msa0987570 | 0.823710 | 1.196269e-53 | -8.615850e-47 |
| Msa0700370 | Msa0987570 | 0.852767 | 3.719246e-61 | -8.615850e-47 |
| Msa0127230 | Msa0987570 | 0.863063 | 3.251930e-64 | -8.615850e-47 |
| Msa0377610 | Msa0987570 | 0.823880 | 1.091415e-53 | -8.615850e-47 |
| Msa0383240 | Msa0987570 | 0.825632 | 4.216835e-54 | -8.615850e-47 |
| Msa0387290 | Msa0987570 | 0.842421 | 2.613567e-58 | -8.615850e-47 |
| Msa0388540 | Msa0987570 | 0.844164 | 8.958553e-59 | -8.615850e-47 |
| Msa0426820 | Msa0987570 | 0.855365 | 6.624276e-62 | -8.615850e-47 |
| Msa0427380 | Msa0987570 | 0.800314 | 1.527229e-48 | -8.615850e-47 |
| Msa0467740 | Msa0987570 | 0.834587 | 2.750193e-56 | -8.615850e-47 |
| Msa0477670 | Msa0987570 | 0.872590 | 2.830507e-67 | -8.615850e-47 |
| Msa0987570 | Msa0998890 | 0.814100 | 1.829282e-51 | -8.615850e-47 |
| Msa0987570 | Msa1144630 | 0.844616 | 6.771549e-59 | -8.615850e-47 |
| Msa0987570 | Msa1165700 | 0.838791 | 2.331491e-57 | -8.615850e-47 |
| Msa0987570 | Msa1284800 | 0.831822 | 1.342255e-55 | -8.615850e-47 |
| Msa0987570 | Msa1363930 | 0.842771 | 2.110018e-58 | -8.615850e-47 |
| Msa0987570 | Msa1366540 | 0.825912 | 3.619471e-54 | -8.615850e-47 |
| Msa0987570 | Msa1387750 | 0.870106 | 1.874669e-66 | -8.615850e-47 |
| Msa0987570 | Msa1403520 | 0.809712 | 1.652009e-50 | -8.615850e-47 |
| Msa0987570 | Msa1413570 | 0.812289 | 4.568736e-51 | -8.615850e-47 |
| Msa0987570 | Msa1463510 | 0.860676 | 1.749061e-63 | -8.615850e-47 |
| Msa0987570 | Msa1465890 | 0.851432 | 8.909968e-61 | -8.615850e-47 |
| Msa0511760 | Msa0987570 | 0.800530 | 1.380497e-48 | -8.615850e-47 |
| Msa0514130 | Msa0987570 | 0.827525 | 1.491101e-54 | -8.615850e-47 |
| Msa0858190 | Msa0987570 | 0.829760 | 4.297132e-55 | -8.615850e-47 |
| Msa0930360 | Msa0987570 | 0.819029 | 1.439469e-52 | -8.615850e-47 |
| Msa0942080 | Msa0987570 | 0.801124 | 1.043921e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987570 | MtrunA17_Chr6g0467091 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 4.07e-112 | 314 |
| Msa0987570 | MtrunA17_Chr1g0201521 | 98.684 | 152 | 2 | 0 | 1 | 152 | 1 | 152 | 5.31e-111 | 311 |
| Msa0987570 | MtrunA17_Chr1g0201481 | 98.684 | 152 | 2 | 0 | 1 | 152 | 1 | 152 | 5.31e-111 | 311 |
| Msa0987570 | MtrunA17_Chr5g0409931 | 92.381 | 105 | 8 | 0 | 36 | 140 | 12 | 116 | 2.35e-69 | 205 |
| Msa0987570 | MtrunA17_Chr5g0409851 | 91.011 | 89 | 8 | 0 | 52 | 140 | 1 | 89 | 3.23e-57 | 173 |
| Msa0987570 | MtrunA17_Chr5g0409921 | 92.135 | 89 | 7 | 0 | 52 | 140 | 1 | 89 | 4.95e-57 | 172 |
| Msa0987570 | MtrunA17_Chr5g0409871 | 92.135 | 89 | 7 | 0 | 52 | 140 | 1 | 89 | 6.30e-57 | 172 |
| Msa0987570 | MtrunA17_Chr5g0409881 | 92.135 | 89 | 7 | 0 | 52 | 140 | 1 | 89 | 6.30e-57 | 172 |
| Msa0987570 | MtrunA17_Chr5g0409861 | 92.135 | 89 | 7 | 0 | 52 | 140 | 1 | 89 | 6.30e-57 | 172 |
| Msa0987570 | MtrunA17_Chr5g0409911 | 92.135 | 89 | 7 | 0 | 52 | 140 | 1 | 89 | 6.30e-57 | 172 |
| Msa0987570 | MtrunA17_Chr5g0409891 | 92.135 | 89 | 7 | 0 | 52 | 140 | 1 | 89 | 6.30e-57 | 172 |
| Msa0987570 | MtrunA17_Chr5g0409901 | 92.857 | 70 | 5 | 0 | 52 | 121 | 1 | 70 | 8.87e-43 | 136 |
| Msa0987570 | MtrunA17_Chr4g0006461 | 76.562 | 64 | 14 | 1 | 67 | 129 | 9 | 72 | 2.77e-28 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987570 | AT4G09800.1 | 91.447 | 152 | 13 | 0 | 1 | 152 | 1 | 152 | 1.99e-104 | 295 |
| Msa0987570 | AT1G34030.1 | 91.447 | 152 | 13 | 0 | 1 | 152 | 1 | 152 | 1.99e-104 | 295 |
| Msa0987570 | AT1G22780.1 | 91.447 | 152 | 13 | 0 | 1 | 152 | 1 | 152 | 1.99e-104 | 295 |
Find 52 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAATGTCAGAATAGTTTA+TGG | 0.216472 | 6_4:-38289409 | Msa0987570:three_prime_UTR |
| GCACTTCTAAATATCTTTAC+AGG | 0.295063 | 6_4:-38289464 | Msa0987570:three_prime_UTR |
| AAGTTGTCGAGATATTAAAT+AGG | 0.295095 | 6_4:-38289564 | Msa0987570:three_prime_UTR |
| CATGAAGTTGAGGGATGATT+TGG | 0.348922 | 6_4:-38291616 | Msa0987570:CDS |
| GGGAGAGAGAGGAGGGAGGT+TGG | 0.361673 | 6_4:+38293074 | None:intergenic |
| TCAGGTTGTTTCAAATCAAC+TGG | 0.361693 | 6_4:-38291640 | Msa0987570:CDS |
| AAGTGATTAATTTACTACTT+AGG | 0.374050 | 6_4:-38289384 | None:intergenic |
| ATCGAGGTTTGAGACATTAC+TGG | 0.376627 | 6_4:-38289818 | Msa0987570:CDS |
| AGTGATTAATTTACTACTTA+GGG | 0.389956 | 6_4:-38289383 | None:intergenic |
| ATGACTTCAATCAAAGGTAT+TGG | 0.407492 | 6_4:-38292830 | Msa0987570:CDS |
| GGGATATGGGAGAGAGAGGA+GGG | 0.422106 | 6_4:+38293067 | None:intergenic |
| CTTTCTTGTGTGTTGTTGAA+AGG | 0.423759 | 6_4:+38293121 | None:intergenic |
| AGTTGTCGAGATATTAAATA+GGG | 0.423901 | 6_4:-38289563 | Msa0987570:three_prime_UTR |
| TTTCACTGGTAATTTCTCTT+CGG | 0.434637 | 6_4:+38289697 | None:intergenic |
| GGCAATTCAAGGTCCCTGAT+TGG | 0.439048 | 6_4:-38291704 | Msa0987570:CDS |
| CGATTTAAACTTTCTTTCAC+TGG | 0.441731 | 6_4:+38289683 | None:intergenic |
| TACTGGGGTCTCCGTGTTCG+TGG | 0.463684 | 6_4:-38289801 | Msa0987570:CDS |
| AGAGAGAGGAGGGAGGTTGG+CGG | 0.473034 | 6_4:+38293077 | None:intergenic |
| TGGGATATGGGAGAGAGAGG+AGG | 0.481024 | 6_4:+38293066 | None:intergenic |
| TGGAGCGCTTGAAGAAGATC+AGG | 0.487727 | 6_4:-38291596 | Msa0987570:intron |
| GTGTTGAATACCAACGTTGA+TGG | 0.503977 | 6_4:-38292875 | Msa0987570:CDS |
| TCGAGGTTTGAGACATTACT+GGG | 0.508041 | 6_4:-38289817 | Msa0987570:CDS |
| GACCTTGAATTGCCTAGGGT+TGG | 0.508321 | 6_4:+38291713 | None:intergenic |
| TCCTCTACGACCAGTAGTCT+TGG | 0.513650 | 6_4:+38289770 | None:intergenic |
| TGAATTGACTGCCGCTGAGT+TGG | 0.517580 | 6_4:-38291757 | Msa0987570:CDS |
| GGACAGCACACCAAGACTAC+TGG | 0.520479 | 6_4:-38289780 | Msa0987570:CDS |
| GAACAGAAAGAAGGATTACA+AGG | 0.525479 | 6_4:-38291676 | Msa0987570:CDS |
| TGCCAACCCTAGGCAATTCA+AGG | 0.526783 | 6_4:-38291715 | Msa0987570:CDS |
| TTTATTAGGGAGTATTTGGA+AGG | 0.530437 | 6_4:-38289519 | Msa0987570:three_prime_UTR |
| CGGTGGGATATGGGAGAGAG+AGG | 0.533057 | 6_4:+38293063 | None:intergenic |
| CCAACATGTAACTCAGTACC+AGG | 0.544602 | 6_4:+38289593 | None:intergenic |
| ATATGGGAGAGAGAGGAGGG+AGG | 0.549077 | 6_4:+38293070 | None:intergenic |
| TCAACTGGACATGAAGTTGA+GGG | 0.551353 | 6_4:-38291625 | Msa0987570:CDS |
| ATCAACTGGACATGAAGTTG+AGG | 0.554008 | 6_4:-38291626 | Msa0987570:CDS |
| TCAGGGACCTTGAATTGCCT+AGG | 0.557398 | 6_4:+38291708 | None:intergenic |
| AGAAAGAAGGATTACAAGGA+TGG | 0.565673 | 6_4:-38291672 | Msa0987570:CDS |
| CAGGGACCTTGAATTGCCTA+GGG | 0.574005 | 6_4:+38291709 | None:intergenic |
| CTTCTGCTTTCCATCAACGT+TGG | 0.575809 | 6_4:+38292865 | None:intergenic |
| TGGTGTGCTGTCCACGAACA+CGG | 0.579042 | 6_4:+38289790 | None:intergenic |
| TGTAACTCAGTACCAGGTCA+TGG | 0.590726 | 6_4:+38289599 | None:intergenic |
| TGACTGTGGTTGCCAACCCT+AGG | 0.601099 | 6_4:-38291725 | Msa0987570:CDS |
| CTGATGTTGACATGAACAAG+AGG | 0.608795 | 6_4:-38292775 | Msa0987570:intron |
| TTTGCTATGACTTCAATCAA+AGG | 0.610699 | 6_4:-38292836 | Msa0987570:CDS |
| CCTGGTACTGAGTTACATGT+TGG | 0.619383 | 6_4:-38289593 | Msa0987570:three_prime_UTR |
| GGATATGTACCATGGTATGT+TGG | 0.626543 | 6_4:+38293035 | None:intergenic |
| ACCAAGACTACTGGTCGTAG+AGG | 0.645367 | 6_4:-38289771 | Msa0987570:CDS |
| ACCGCAAAACCAACATACCA+TGG | 0.658075 | 6_4:-38293044 | Msa0987570:intron |
| GGTCGTAGAGGAAAGACTGT+CGG | 0.671409 | 6_4:-38289759 | Msa0987570:CDS |
| GAATTATGCAGGAATCATCG+AGG | 0.707085 | 6_4:-38289834 | Msa0987570:intron |
| GTTGGAGAACATTATGACTG+TGG | 0.726380 | 6_4:-38291739 | Msa0987570:CDS |
| CATAATGTTCTCCAACTCAG+CGG | 0.735443 | 6_4:+38291746 | None:intergenic |
| CGAGGTTTGAGACATTACTG+GGG | 0.783933 | 6_4:-38289816 | Msa0987570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTAATTTTTTA+GGG | - | chr6_4:38289547-38289566 | Msa0987570:three_prime_UTR | 0.0% |
| !! | TAAAAAAAAATTGTAGAAAA+TGG | + | chr6_4:38289539-38289558 | None:intergenic | 10.0% |
| !!! | TGATTATTTTTTATATTGTT+TGG | - | chr6_4:38290224-38290243 | Msa0987570:intron | 10.0% |
| !! | TATCTATTTAACAAAATATT+TGG | + | chr6_4:38292226-38292245 | None:intergenic | 10.0% |
| !! | AAACTATTAAAATTATTTAG+AGG | - | chr6_4:38292315-38292334 | Msa0987570:intron | 10.0% |
| !!! | TAATTTTTTAGGGATTTTTT+TGG | - | chr6_4:38289557-38289576 | Msa0987570:three_prime_UTR | 15.0% |
| !!! | TTTTTTAGTGAAATTGATAT+TGG | - | chr6_4:38289842-38289861 | Msa0987570:intron | 15.0% |
| !! | TTAGAATTTCATGTTTAATT+AGG | - | chr6_4:38289947-38289966 | Msa0987570:intron | 15.0% |
| !!! | TTTTTTTTTGTTGGATTTAA+AGG | - | chr6_4:38289987-38290006 | Msa0987570:intron | 15.0% |
| !! | AAAAAATGGCTTATAAAAAA+TGG | - | chr6_4:38290518-38290537 | Msa0987570:intron | 15.0% |
| !!! | TGTAATTATGTTGTTTAATT+AGG | - | chr6_4:38290658-38290677 | Msa0987570:intron | 15.0% |
| !! | TTTCATGATTTATATTGAAA+TGG | - | chr6_4:38290682-38290701 | Msa0987570:intron | 15.0% |
| !! | TTCATGATTTATATTGAAAT+GGG | - | chr6_4:38290683-38290702 | Msa0987570:intron | 15.0% |
| !! | TTCGTTATTATAATATGAAA+AGG | + | chr6_4:38291164-38291183 | None:intergenic | 15.0% |
| !!! | ATCTGTTTTTGTTTTTTTTT+TGG | + | chr6_4:38291910-38291929 | None:intergenic | 15.0% |
| !!! | AATTATTTGTGCTTTTTATT+AGG | - | chr6_4:38292987-38293006 | Msa0987570:intron | 15.0% |
| !!! | ATTATTTGTGCTTTTTATTA+GGG | - | chr6_4:38292988-38293007 | Msa0987570:intron | 15.0% |
| !! | TTTCATGATTTATACTGTAA+TGG | - | chr6_4:38289873-38289892 | Msa0987570:intron | 20.0% |
| !! | TTCATGATTTATACTGTAAT+GGG | - | chr6_4:38289874-38289893 | Msa0987570:intron | 20.0% |
| !! | TAATTAGGTTTATACTGTAA+TGG | - | chr6_4:38289962-38289981 | Msa0987570:intron | 20.0% |
| !!! | GTAATGGTTTTTTTTTTTGT+TGG | - | chr6_4:38289978-38289997 | Msa0987570:intron | 20.0% |
| !!! | ATACTAGTATAAGTTTTAAG+AGG | - | chr6_4:38290352-38290371 | Msa0987570:intron | 20.0% |
| !!! | TTTTTATAAGTTTTCCAAGA+TGG | - | chr6_4:38290435-38290454 | Msa0987570:intron | 20.0% |
| !!! | TTTATCTTTTGCTGAAAAAA+TGG | - | chr6_4:38290504-38290523 | Msa0987570:intron | 20.0% |
| !!! | TTGTTATTTATTTACGACTT+TGG | - | chr6_4:38291105-38291124 | Msa0987570:intron | 20.0% |
| !! | AAAAAATATCCAACATAGAA+AGG | + | chr6_4:38291715-38291734 | None:intergenic | 20.0% |
| !!! | TTGGATATTTTTTCTGTTTT+TGG | - | chr6_4:38291722-38291741 | Msa0987570:CDS | 20.0% |
| !!! | TACACAACCATTTTTTAATT+TGG | - | chr6_4:38292510-38292529 | Msa0987570:intron | 20.0% |
| !! | AATAATGTCAGAATAGTTTA+TGG | - | chr6_4:38293111-38293130 | Msa0987570:five_prime_UTR | 20.0% |
| ! | ATTGAGATTGTTGAAGAAAA+TGG | + | chr6_4:38289509-38289528 | None:intergenic | 25.0% |
| ! | CTAAAAAACCAGAAAAACAA+AGG | + | chr6_4:38289786-38289805 | None:intergenic | 25.0% |
| ! | TTTGTTGGATTTAAAGGATA+TGG | - | chr6_4:38289993-38290012 | Msa0987570:intron | 25.0% |
| ! | TTCGAAATAATCATAAGAGT+GGG | + | chr6_4:38290082-38290101 | None:intergenic | 25.0% |
| ! | TTTCGAAATAATCATAAGAG+TGG | + | chr6_4:38290083-38290102 | None:intergenic | 25.0% |
| ! | TTGGAATTTCATGTTTACTT+AGG | - | chr6_4:38290243-38290262 | Msa0987570:intron | 25.0% |
| !!! | ATAAGTTTTAAGAGGCATTT+TGG | - | chr6_4:38290360-38290379 | Msa0987570:intron | 25.0% |
| !!! | TAAGTTTTAAGAGGCATTTT+GGG | - | chr6_4:38290361-38290380 | Msa0987570:intron | 25.0% |
| ! | AACAAAAGCTCTTTCAAATT+AGG | + | chr6_4:38291090-38291109 | None:intergenic | 25.0% |
| !! | AAACAGAAAAATGTTGATTG+AGG | + | chr6_4:38291356-38291375 | None:intergenic | 25.0% |
| !! | GAAAAATGTTGATTGAGTAA+AGG | + | chr6_4:38291486-38291505 | None:intergenic | 25.0% |
| !!! | TCCTTTTGAGTTTTCTATTT+GGG | - | chr6_4:38291769-38291788 | Msa0987570:intron | 25.0% |
| ! | TTTAACTGATCAATAAAACC+TGG | + | chr6_4:38291825-38291844 | None:intergenic | 25.0% |
| ! | AGAGTATAGATCAAATGAAA+GGG | - | chr6_4:38292153-38292172 | Msa0987570:intron | 25.0% |
| ! | TGTTAAATAGATATGACTCA+TGG | - | chr6_4:38292233-38292252 | Msa0987570:intron | 25.0% |
| ! | CATGTATAGATCAAATGAAA+GGG | - | chr6_4:38292268-38292287 | Msa0987570:intron | 25.0% |
| !!! | CAACCATTTTTTAATTTGGT+TGG | - | chr6_4:38292514-38292533 | Msa0987570:intron | 25.0% |
| ! | CTACCAACCAAATTAAAAAA+TGG | + | chr6_4:38292520-38292539 | None:intergenic | 25.0% |
| ! | GACAATAAAATACAATTGAC+AGG | + | chr6_4:38292630-38292649 | None:intergenic | 25.0% |
| ! | TACTTCAATTTGAATTATGC+AGG | - | chr6_4:38292675-38292694 | Msa0987570:intron | 25.0% |
| ! | AAGTTGTCGAGATATTAAAT+AGG | - | chr6_4:38292956-38292975 | Msa0987570:intron | 25.0% |
| ! | AGTTGTCGAGATATTAAATA+GGG | - | chr6_4:38292957-38292976 | Msa0987570:intron | 25.0% |
| AAGAAAATGGATATGTACCA+TGG | + | chr6_4:38289496-38289515 | None:intergenic | 30.0% | |
| ! | TTTGCTATGACTTCAATCAA+AGG | - | chr6_4:38289684-38289703 | Msa0987570:three_prime_UTR | 30.0% |
| ! | ATGACTTCAATCAAAGGTAT+TGG | - | chr6_4:38289690-38289709 | Msa0987570:three_prime_UTR | 30.0% |
| !!! | TCATCAATCCTTTGTTTTTC+TGG | - | chr6_4:38289775-38289794 | Msa0987570:CDS | 30.0% |
| TCGAAATAATCATAAGAGTG+GGG | + | chr6_4:38290081-38290100 | None:intergenic | 30.0% | |
| !!! | ATTGTTTTGATTTTCAGAGC+TGG | - | chr6_4:38290740-38290759 | Msa0987570:intron | 30.0% |
| TTCTGTTCAAAAACCAATCA+GGG | + | chr6_4:38290832-38290851 | None:intergenic | 30.0% | |
| TTTCTGTTCAAAAACCAATC+AGG | + | chr6_4:38290833-38290852 | None:intergenic | 30.0% | |
| !! | TTGGTTTTTGAACAGAAAGA+AGG | - | chr6_4:38290835-38290854 | Msa0987570:intron | 30.0% |
| ATCAGAAAAACAACCAATGT+CGG | + | chr6_4:38291269-38291288 | None:intergenic | 30.0% | |
| CAAAACAAAAACTACAGATG+TGG | + | chr6_4:38291463-38291482 | None:intergenic | 30.0% | |
| TTACGTGTGACACATAATAA+TGG | - | chr6_4:38291537-38291556 | Msa0987570:intron | 30.0% | |
| CAATACATAAACTACAGATG+TGG | + | chr6_4:38291570-38291589 | None:intergenic | 30.0% | |
| TATTGCCAATAGTGATTAGA+TGG | - | chr6_4:38291585-38291604 | Msa0987570:intron | 30.0% | |
| TGTTTCCATCTAATCACTAT+TGG | + | chr6_4:38291593-38291612 | None:intergenic | 30.0% | |
| CACAAATACAACAATGACAA+AGG | + | chr6_4:38291616-38291635 | None:intergenic | 30.0% | |
| CAAAAGGACGAAAATTGTAA+TGG | + | chr6_4:38291757-38291776 | None:intergenic | 30.0% | |
| !!! | GTCCTTTTGAGTTTTCTATT+TGG | - | chr6_4:38291768-38291787 | Msa0987570:intron | 30.0% |
| ACCCAAATAGAAAACTCAAA+AGG | + | chr6_4:38291773-38291792 | None:intergenic | 30.0% | |
| !!! | TTTTGAGTTTTCTATTTGGG+TGG | - | chr6_4:38291772-38291791 | Msa0987570:intron | 30.0% |
| TAGTGAAGTCTTGACTTAAT+TGG | - | chr6_4:38292088-38292107 | Msa0987570:intron | 30.0% | |
| AAGTCTTGACTTAATTGGTT+TGG | - | chr6_4:38292093-38292112 | Msa0987570:intron | 30.0% | |
| GACCTATAGATTCAGAATTA+AGG | - | chr6_4:38292130-38292149 | Msa0987570:intron | 30.0% | |
| CTCCTTAATTCTGAATCTAT+AGG | + | chr6_4:38292135-38292154 | None:intergenic | 30.0% | |
| ! | GAGAGTATAGATCAAATGAA+AGG | - | chr6_4:38292152-38292171 | Msa0987570:intron | 30.0% |
| TCATTTGATCTATACATGGT+AGG | + | chr6_4:38292266-38292285 | None:intergenic | 30.0% | |
| CCTTTCATTTGATCTATACA+TGG | + | chr6_4:38292270-38292289 | None:intergenic | 30.0% | |
| CCATGTATAGATCAAATGAA+AGG | - | chr6_4:38292267-38292286 | Msa0987570:intron | 30.0% | |
| AAGCATGTTCAAATTAGTGT+TGG | - | chr6_4:38292478-38292497 | Msa0987570:intron | 30.0% | |
| ! | TTCGAAATTTTCTGTTGAGA+TGG | - | chr6_4:38292546-38292565 | Msa0987570:intron | 30.0% |
| TTTCACTGGTAATTTCTCTT+CGG | + | chr6_4:38292826-38292845 | None:intergenic | 30.0% | |
| CGATTTAAACTTTCTTTCAC+TGG | + | chr6_4:38292840-38292859 | None:intergenic | 30.0% | |
| !!! | GCTTTTTATTAGGGAGTATT+TGG | - | chr6_4:38292997-38293016 | Msa0987570:intron | 30.0% |
| !! | TTTATTAGGGAGTATTTGGA+AGG | - | chr6_4:38293001-38293020 | Msa0987570:intron | 30.0% |
| GCACTTCTAAATATCTTTAC+AGG | - | chr6_4:38293056-38293075 | Msa0987570:five_prime_UTR | 30.0% | |
| ! | CTTTCTTGTGTGTTGTTGAA+AGG | + | chr6_4:38289402-38289421 | None:intergenic | 35.0% |
| TAAGCTCAAATAAGCCAATC+CGG | + | chr6_4:38290331-38290350 | None:intergenic | 35.0% | |
| ! | GATGTTTTCAAAAGCCATCT+TGG | + | chr6_4:38290452-38290471 | None:intergenic | 35.0% |
| AAACTTAGCCTAACTGCAAT+GGG | - | chr6_4:38290612-38290631 | Msa0987570:intron | 35.0% | |
| ! | TAACTGCAATGGGTTTACTT+GGG | - | chr6_4:38290622-38290641 | Msa0987570:intron | 35.0% |
| GAACAGAAAGAAGGATTACA+AGG | - | chr6_4:38290844-38290863 | Msa0987570:intron | 35.0% | |
| AGAAAGAAGGATTACAAGGA+TGG | - | chr6_4:38290848-38290867 | Msa0987570:intron | 35.0% | |
| ! | TCAGGTTGTTTCAAATCAAC+TGG | - | chr6_4:38290880-38290899 | Msa0987570:intron | 35.0% |
| CTCATGTTTGTTCTGTAGTT+TGG | - | chr6_4:38290966-38290985 | Msa0987570:intron | 35.0% | |
| ATGTTTGTTCTGTAGTTTGG+TGG | - | chr6_4:38290969-38290988 | Msa0987570:intron | 35.0% | |
| ! | GGTACTCATTAGTATTGAAC+TGG | - | chr6_4:38290990-38291009 | Msa0987570:intron | 35.0% |
| CTCTTTCAAATTAGGTGAGA+AGG | + | chr6_4:38291082-38291101 | None:intergenic | 35.0% | |
| GATGATTATATCCACGAGTT+AGG | + | chr6_4:38291198-38291217 | None:intergenic | 35.0% | |
| GATATAATCATCACGAGGAA+TGG | - | chr6_4:38291206-38291225 | Msa0987570:intron | 35.0% | |
| !!! | CAAGATTGTTTTGATCGTCA+AGG | - | chr6_4:38291302-38291321 | Msa0987570:intron | 35.0% |
| ATGCGAATATTAGACGAGTT+AGG | - | chr6_4:38292015-38292034 | Msa0987570:intron | 35.0% | |
| TGCATGATAACATTAGAGAG+AGG | - | chr6_4:38292042-38292061 | Msa0987570:intron | 35.0% | |
| GTAGTCGAATTGCTAAATGT+TGG | - | chr6_4:38292175-38292194 | Msa0987570:intron | 35.0% | |
| AATAGATATGACTCATGGTG+TGG | - | chr6_4:38292238-38292257 | Msa0987570:intron | 35.0% | |
| CATGGTAGAATTCACAACAT+GGG | + | chr6_4:38292367-38292386 | None:intergenic | 35.0% | |
| ACATGGTAGAATTCACAACA+TGG | + | chr6_4:38292368-38292387 | None:intergenic | 35.0% | |
| ATGTTGTGAATTCTACCATG+TGG | - | chr6_4:38292367-38292386 | Msa0987570:intron | 35.0% | |
| CAACATAACACGTATCTTAC+AGG | + | chr6_4:38292437-38292456 | None:intergenic | 35.0% | |
| CTGTAAGATACGTGTTATGT+TGG | - | chr6_4:38292435-38292454 | Msa0987570:intron | 35.0% | |
| TAAGATACGTGTTATGTTGG+AGG | - | chr6_4:38292438-38292457 | Msa0987570:intron | 35.0% | |
| AAGATACGTGTTATGTTGGA+GGG | - | chr6_4:38292439-38292458 | Msa0987570:intron | 35.0% | |
| !!! | ATTTTGTTGTTTCCATGACC+TGG | - | chr6_4:38292909-38292928 | Msa0987570:CDS | 35.0% |
| !!! | ACCATGGTATGTTGGTTTTG+CGG | + | chr6_4:38289480-38289499 | None:intergenic | 40.0% |
| GGATATGTACCATGGTATGT+TGG | + | chr6_4:38289488-38289507 | None:intergenic | 40.0% | |
| GTGATGAATTGTGCAGTCTT+TGG | - | chr6_4:38289590-38289609 | Msa0987570:three_prime_UTR | 40.0% | |
| GTGTTGAATACCAACGTTGA+TGG | - | chr6_4:38289645-38289664 | Msa0987570:three_prime_UTR | 40.0% | |
| CTGATGTTGACATGAACAAG+AGG | - | chr6_4:38289745-38289764 | Msa0987570:CDS | 40.0% | |
| TTGTTGCCCAACTAGATCTA+GGG | - | chr6_4:38290300-38290319 | Msa0987570:intron | 40.0% | |
| CATTGCAGTTAGGCTAAGTT+TGG | + | chr6_4:38290613-38290632 | None:intergenic | 40.0% | |
| CAAACTTAGCCTAACTGCAA+TGG | - | chr6_4:38290611-38290630 | Msa0987570:intron | 40.0% | |
| CAAGTAAACCCATTGCAGTT+AGG | + | chr6_4:38290623-38290642 | None:intergenic | 40.0% | |
| ! | CTAACTGCAATGGGTTTACT+TGG | - | chr6_4:38290621-38290640 | Msa0987570:intron | 40.0% |
| CATAATGTTCTCCAACTCAG+CGG | + | chr6_4:38290777-38290796 | None:intergenic | 40.0% | |
| GTTGGAGAACATTATGACTG+TGG | - | chr6_4:38290781-38290800 | Msa0987570:intron | 40.0% | |
| ATCAACTGGACATGAAGTTG+AGG | - | chr6_4:38290894-38290913 | Msa0987570:intron | 40.0% | |
| TCAACTGGACATGAAGTTGA+GGG | - | chr6_4:38290895-38290914 | Msa0987570:intron | 40.0% | |
| CATGAAGTTGAGGGATGATT+TGG | - | chr6_4:38290904-38290923 | Msa0987570:intron | 40.0% | |
| TGAATTGTTTGCCTAACTCG+TGG | - | chr6_4:38291184-38291203 | Msa0987570:intron | 40.0% | |
| TCGTGGATATAATCATCACG+AGG | - | chr6_4:38291201-38291220 | Msa0987570:intron | 40.0% | |
| AAAACATGTCTGTCCGACAT+TGG | - | chr6_4:38291253-38291272 | Msa0987570:intron | 40.0% | |
| GAGGAAAAAAAGTCGAGAGA+GGG | + | chr6_4:38291337-38291356 | None:intergenic | 40.0% | |
| TGAGGAAAAAAAGTCGAGAG+AGG | + | chr6_4:38291338-38291357 | None:intergenic | 40.0% | |
| GGTAGGAAACAGACATAAGT+TGG | + | chr6_4:38291669-38291688 | None:intergenic | 40.0% | |
| ! | GTGGTTTAGCCTTTCTATGT+TGG | - | chr6_4:38291703-38291722 | Msa0987570:CDS | 40.0% |
| ! | GAGTTTTCTATTTGGGTGGT+TGG | - | chr6_4:38291776-38291795 | Msa0987570:intron | 40.0% |
| AACCTGGCTTAGACTCTTAA+GGG | + | chr6_4:38291809-38291828 | None:intergenic | 40.0% | |
| AAACCTGGCTTAGACTCTTA+AGG | + | chr6_4:38291810-38291829 | None:intergenic | 40.0% | |
| TAAACTCAATGTTGCAGCGA+TGG | - | chr6_4:38291974-38291993 | Msa0987570:intron | 40.0% | |
| AAACTCAATGTTGCAGCGAT+GGG | - | chr6_4:38291975-38291994 | Msa0987570:intron | 40.0% | |
| GTAGTCGAATCGCTAAATGT+TGG | - | chr6_4:38292290-38292309 | Msa0987570:intron | 40.0% | |
| CAGGTCAGGATTCATTACAT+GGG | + | chr6_4:38292418-38292437 | None:intergenic | 40.0% | |
| ACAGGTCAGGATTCATTACA+TGG | + | chr6_4:38292419-38292438 | None:intergenic | 40.0% | |
| TAACACGTATCTTACAGGTC+AGG | + | chr6_4:38292432-38292451 | None:intergenic | 40.0% | |
| GAATTATGCAGGAATCATCG+AGG | - | chr6_4:38292686-38292705 | Msa0987570:intron | 40.0% | |
| ! | ATCGAGGTTTGAGACATTAC+TGG | - | chr6_4:38292702-38292721 | Msa0987570:intron | 40.0% |
| ! | TCGAGGTTTGAGACATTACT+GGG | - | chr6_4:38292703-38292722 | Msa0987570:intron | 40.0% |
| !!! | TTGGTTTTGCGGTGGGATAT+GGG | + | chr6_4:38289469-38289488 | None:intergenic | 45.0% |
| !!! | TGGTATGTTGGTTTTGCGGT+GGG | + | chr6_4:38289476-38289495 | None:intergenic | 45.0% |
| !!! | ATGGTATGTTGGTTTTGCGG+TGG | + | chr6_4:38289477-38289496 | None:intergenic | 45.0% |
| ACCGCAAAACCAACATACCA+TGG | - | chr6_4:38289476-38289495 | Msa0987570:three_prime_UTR | 45.0% | |
| CTTCTGCTTTCCATCAACGT+TGG | + | chr6_4:38289658-38289677 | None:intergenic | 45.0% | |
| GTTGTTGCCCAACTAGATCT+AGG | - | chr6_4:38290299-38290318 | Msa0987570:intron | 45.0% | |
| TCAAATAAGCCAATCCGGAC+AGG | + | chr6_4:38290326-38290345 | None:intergenic | 45.0% | |
| AGCACGGATGATAAGTGCTT+AGG | + | chr6_4:38290560-38290579 | None:intergenic | 45.0% | |
| TGCAGCTTATAGCACAAGCA+CGG | + | chr6_4:38290576-38290595 | None:intergenic | 45.0% | |
| ! | CAAGGATGGCAAGTTTTCTC+AGG | - | chr6_4:38290862-38290881 | Msa0987570:intron | 45.0% |
| AAACCACATCATTAGCGTGC+AGG | + | chr6_4:38291690-38291709 | None:intergenic | 45.0% | |
| ATCCCTTAAGAGTCTAAGCC+AGG | - | chr6_4:38291804-38291823 | Msa0987570:intron | 45.0% | |
| CCAACACAACTTACTCCACA+TGG | + | chr6_4:38292385-38292404 | None:intergenic | 45.0% | |
| CCATGTGGAGTAAGTTGTGT+TGG | - | chr6_4:38292382-38292401 | Msa0987570:intron | 45.0% | |
| ! | CGAGGTTTGAGACATTACTG+GGG | - | chr6_4:38292704-38292723 | Msa0987570:intron | 45.0% |
| TGTAACTCAGTACCAGGTCA+TGG | + | chr6_4:38292924-38292943 | None:intergenic | 45.0% | |
| CCAACATGTAACTCAGTACC+AGG | + | chr6_4:38292930-38292949 | None:intergenic | 45.0% | |
| ! | CCTGGTACTGAGTTACATGT+TGG | - | chr6_4:38292927-38292946 | Msa0987570:intron | 45.0% |
| !!! | CAATTTTTTTTTAATTTTTT+AGG | - | chr6_4:38289546-38289565 | Msa0987570:three_prime_UTR | 5.0% |
| !!! | ATTGATTTTAAATATTTTTA+AGG | - | chr6_4:38290200-38290219 | Msa0987570:intron | 5.0% |
| !! | AAATTATTAAAATTATTTAG+AGG | - | chr6_4:38292200-38292219 | Msa0987570:intron | 5.0% |
| !! | TATATATTTAACAAAATATT+TGG | + | chr6_4:38292341-38292360 | None:intergenic | 5.0% |
| !! | TATACAAAAAATAAAAAAAA+AGG | + | chr6_4:38292586-38292605 | None:intergenic | 5.0% |
| !!! | GTTGGTTTTGCGGTGGGATA+TGG | + | chr6_4:38289470-38289489 | None:intergenic | 50.0% |
| GACAGGCCCTAGATCTAGTT+GGG | + | chr6_4:38290309-38290328 | None:intergenic | 50.0% | |
| ! | AACTAGATCTAGGGCCTGTC+CGG | - | chr6_4:38290309-38290328 | Msa0987570:intron | 50.0% |
| TGAATTGACTGCCGCTGAGT+TGG | - | chr6_4:38290763-38290782 | Msa0987570:intron | 50.0% | |
| TGCCAACCCTAGGCAATTCA+AGG | - | chr6_4:38290805-38290824 | Msa0987570:intron | 50.0% | |
| GACCTTGAATTGCCTAGGGT+TGG | + | chr6_4:38290810-38290829 | None:intergenic | 50.0% | |
| CAGGGACCTTGAATTGCCTA+GGG | + | chr6_4:38290814-38290833 | None:intergenic | 50.0% | |
| TCAGGGACCTTGAATTGCCT+AGG | + | chr6_4:38290815-38290834 | None:intergenic | 50.0% | |
| GGCAATTCAAGGTCCCTGAT+TGG | - | chr6_4:38290816-38290835 | Msa0987570:intron | 50.0% | |
| ! | TGGAGCGCTTGAAGAAGATC+AGG | - | chr6_4:38290924-38290943 | Msa0987570:intron | 50.0% |
| CACATCATTAGCGTGCAGGT+AGG | + | chr6_4:38291686-38291705 | None:intergenic | 50.0% | |
| CTACCTGCACGCTAATGATG+TGG | - | chr6_4:38291684-38291703 | Msa0987570:CDS | 50.0% | |
| ACCAAGACTACTGGTCGTAG+AGG | - | chr6_4:38292749-38292768 | Msa0987570:intron | 50.0% | |
| TCCTCTACGACCAGTAGTCT+TGG | + | chr6_4:38292753-38292772 | None:intergenic | 50.0% | |
| GGTCGTAGAGGAAAGACTGT+CGG | - | chr6_4:38292761-38292780 | Msa0987570:intron | 50.0% | |
| ATATGGGAGAGAGAGGAGGG+AGG | + | chr6_4:38289453-38289472 | None:intergenic | 55.0% | |
| GGGATATGGGAGAGAGAGGA+GGG | + | chr6_4:38289456-38289475 | None:intergenic | 55.0% | |
| TGGGATATGGGAGAGAGAGG+AGG | + | chr6_4:38289457-38289476 | None:intergenic | 55.0% | |
| GGACAGGCCCTAGATCTAGT+TGG | + | chr6_4:38290310-38290329 | None:intergenic | 55.0% | |
| TGACTGTGGTTGCCAACCCT+AGG | - | chr6_4:38290795-38290814 | Msa0987570:intron | 55.0% | |
| CAGCGATGGGAATGTTGTGC+TGG | - | chr6_4:38291988-38292007 | Msa0987570:intron | 55.0% | |
| TGGTGTGCTGTCCACGAACA+CGG | + | chr6_4:38292733-38292752 | None:intergenic | 55.0% | |
| GGACAGCACACCAAGACTAC+TGG | - | chr6_4:38292740-38292759 | Msa0987570:intron | 55.0% | |
| AGAGAGAGGAGGGAGGTTGG+CGG | + | chr6_4:38289446-38289465 | None:intergenic | 60.0% | |
| CGGTGGGATATGGGAGAGAG+AGG | + | chr6_4:38289460-38289479 | None:intergenic | 60.0% | |
| ! | GATCTAGGGCCTGTCCGGAT+TGG | - | chr6_4:38290314-38290333 | Msa0987570:intron | 60.0% |
| TACTGGGGTCTCCGTGTTCG+TGG | - | chr6_4:38292719-38292738 | Msa0987570:intron | 60.0% | |
| GGGAGAGAGAGGAGGGAGGT+TGG | + | chr6_4:38289449-38289468 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 38289386 | 38293156 | 38289386 | ID=Msa0987570;Name=Msa0987570 |
| chr6_4 | mRNA | 38289386 | 38293156 | 38289386 | ID=Msa0987570-mRNA-1;Parent=Msa0987570;Name=Msa0987570-mRNA-1;_AED=0.14;_eAED=0.14;_QI=109|1|1|1|1|1|4|354|152 |
| chr6_4 | exon | 38289386 | 38289845 | 38289386 | ID=Msa0987570-mRNA-1:exon:9437;Parent=Msa0987570-mRNA-1 |
| chr6_4 | exon | 38291597 | 38291785 | 38291597 | ID=Msa0987570-mRNA-1:exon:9436;Parent=Msa0987570-mRNA-1 |
| chr6_4 | exon | 38292776 | 38292936 | 38292776 | ID=Msa0987570-mRNA-1:exon:9435;Parent=Msa0987570-mRNA-1 |
| chr6_4 | exon | 38293045 | 38293156 | 38293045 | ID=Msa0987570-mRNA-1:exon:9434;Parent=Msa0987570-mRNA-1 |
| chr6_4 | five_prime_UTR | 38293048 | 38293156 | 38293048 | ID=Msa0987570-mRNA-1:five_prime_utr;Parent=Msa0987570-mRNA-1 |
| chr6_4 | CDS | 38293045 | 38293047 | 38293045 | ID=Msa0987570-mRNA-1:cds;Parent=Msa0987570-mRNA-1 |
| chr6_4 | CDS | 38292776 | 38292936 | 38292776 | ID=Msa0987570-mRNA-1:cds;Parent=Msa0987570-mRNA-1 |
| chr6_4 | CDS | 38291597 | 38291785 | 38291597 | ID=Msa0987570-mRNA-1:cds;Parent=Msa0987570-mRNA-1 |
| chr6_4 | CDS | 38289740 | 38289845 | 38289740 | ID=Msa0987570-mRNA-1:cds;Parent=Msa0987570-mRNA-1 |
| chr6_4 | three_prime_UTR | 38289386 | 38289739 | 38289386 | ID=Msa0987570-mRNA-1:three_prime_utr;Parent=Msa0987570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
