Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426820 | MQL93589.1 | 61.311 | 305 | 65 | 6 | 9 | 311 | 8 | 261 | 4.56e-111 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426820 | sp|P34091|RL6_MESCR | 82.550 | 149 | 26 | 0 | 163 | 311 | 86 | 234 | 1.49e-74 | 231 |
| Msa0426820 | sp|P34091|RL6_MESCR | 82.500 | 120 | 21 | 0 | 2 | 121 | 3 | 122 | 1.35e-61 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426820 | G7J9R6 | 97.521 | 121 | 3 | 0 | 1 | 121 | 1 | 121 | 1.75e-75 | 240 |
| Msa0426820 | G7J9R6 | 99.329 | 149 | 1 | 0 | 163 | 311 | 85 | 233 | 5.67e-95 | 290 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa0426820 | 0.830473 | 2.878889e-55 | -8.615850e-47 |
| Msa0004760 | Msa0426820 | 0.856419 | 3.257874e-62 | -8.615850e-47 |
| Msa0004790 | Msa0426820 | 0.812544 | 4.019914e-51 | -8.615850e-47 |
| Msa0020870 | Msa0426820 | 0.814655 | 1.379683e-51 | -8.615850e-47 |
| Msa0026270 | Msa0426820 | 0.811862 | 5.660832e-51 | -8.615850e-47 |
| Msa0029000 | Msa0426820 | 0.813044 | 3.124184e-51 | -8.615850e-47 |
| Msa0042510 | Msa0426820 | 0.866879 | 2.064006e-65 | -8.615850e-47 |
| Msa0079560 | Msa0426820 | 0.858317 | 8.948749e-63 | -8.615850e-47 |
| Msa0093440 | Msa0426820 | -0.803416 | 3.521994e-49 | -8.615850e-47 |
| Msa0094600 | Msa0426820 | 0.802134 | 6.478858e-49 | -8.615850e-47 |
| Msa0094940 | Msa0426820 | 0.822927 | 1.823194e-53 | -8.615850e-47 |
| Msa0127230 | Msa0426820 | 0.861448 | 1.018456e-63 | -8.615850e-47 |
| Msa0146910 | Msa0426820 | 0.830962 | 2.185286e-55 | -8.615850e-47 |
| Msa0207310 | Msa0426820 | 0.855043 | 8.220831e-62 | -8.615850e-47 |
| Msa0226620 | Msa0426820 | 0.823422 | 1.397366e-53 | -8.615850e-47 |
| Msa0373350 | Msa0426820 | 0.840640 | 7.700281e-58 | -8.615850e-47 |
| Msa0377610 | Msa0426820 | 0.902306 | 1.108830e-78 | -8.615850e-47 |
| Msa0381600 | Msa0426820 | 0.807199 | 5.681215e-50 | -8.615850e-47 |
| Msa0383490 | Msa0426820 | 0.850315 | 1.838751e-60 | -8.615850e-47 |
| Msa0387290 | Msa0426820 | 0.818729 | 1.683885e-52 | -8.615850e-47 |
| Msa0388540 | Msa0426820 | 0.866610 | 2.514740e-65 | -8.615850e-47 |
| Msa0421920 | Msa0426820 | 0.846497 | 2.092428e-59 | -8.615850e-47 |
| Msa0426820 | Msa0427380 | 0.857120 | 2.026922e-62 | -8.615850e-47 |
| Msa0426820 | Msa0440040 | -0.820326 | 7.278318e-53 | -8.615850e-47 |
| Msa0426820 | Msa0467740 | 0.925975 | 8.834417e-91 | -8.615850e-47 |
| Msa0426820 | Msa0470230 | 0.808595 | 2.866658e-50 | -8.615850e-47 |
| Msa0426820 | Msa0477670 | 0.871877 | 4.889621e-67 | -8.615850e-47 |
| Msa0426820 | Msa0492880 | -0.812857 | 3.433153e-51 | -8.615850e-47 |
| Msa0426820 | Msa0514130 | 0.921490 | 3.344349e-88 | -8.615850e-47 |
| Msa0426820 | Msa0532810 | 0.853215 | 2.768113e-61 | -8.615850e-47 |
| Msa0426820 | Msa0621170 | 0.803599 | 3.228040e-49 | -8.615850e-47 |
| Msa0426820 | Msa0621190 | 0.872984 | 2.089106e-67 | -8.615850e-47 |
| Msa0426820 | Msa0621750 | 0.801205 | 1.005030e-48 | -8.615850e-47 |
| Msa0426820 | Msa0635470 | -0.817435 | 3.302003e-52 | -8.615850e-47 |
| Msa0426820 | Msa0641020 | -0.809703 | 1.659423e-50 | -8.615850e-47 |
| Msa0426820 | Msa0656450 | 0.819485 | 1.133350e-52 | -8.615850e-47 |
| Msa0426820 | Msa0660870 | -0.808906 | 2.459686e-50 | -8.615850e-47 |
| Msa0426820 | Msa0679560 | -0.812054 | 5.141131e-51 | -8.615850e-47 |
| Msa0426820 | Msa0700370 | 0.862539 | 4.717549e-64 | -8.615850e-47 |
| Msa0426820 | Msa0715720 | -0.816428 | 5.557543e-52 | -8.615850e-47 |
| Msa0426820 | Msa0776030 | -0.809696 | 1.665241e-50 | -8.615850e-47 |
| Msa0426820 | Msa0788960 | 0.826500 | 2.622413e-54 | -8.615850e-47 |
| Msa0426820 | Msa0799280 | -0.808541 | 2.944013e-50 | -8.615850e-47 |
| Msa0426820 | Msa0858190 | 0.855151 | 7.646061e-62 | -8.615850e-47 |
| Msa0426820 | Msa0876850 | 0.838886 | 2.202291e-57 | -8.615850e-47 |
| Msa0426820 | Msa0881210 | 0.802493 | 5.464994e-49 | -8.615850e-47 |
| Msa0426820 | Msa0912470 | -0.811623 | 6.382153e-51 | -8.615850e-47 |
| Msa0426820 | Msa0930360 | 0.827190 | 1.793947e-54 | -8.615850e-47 |
| Msa0426820 | Msa0942080 | 0.866072 | 3.724761e-65 | -8.615850e-47 |
| Msa0426820 | Msa0956570 | -0.802847 | 4.618669e-49 | -8.615850e-47 |
| Msa0426820 | Msa0987570 | 0.855365 | 6.624276e-62 | -8.615850e-47 |
| Msa0426820 | Msa0998890 | 0.861812 | 7.883573e-64 | -8.615850e-47 |
| Msa0426820 | Msa1027870 | 0.815689 | 8.130172e-52 | -8.615850e-47 |
| Msa0426820 | Msa1037030 | 0.803486 | 3.407563e-49 | -8.615850e-47 |
| Msa0426820 | Msa1041600 | 0.854674 | 1.051885e-61 | -8.615850e-47 |
| Msa0426820 | Msa1068200 | 0.807804 | 4.225674e-50 | -8.615850e-47 |
| Msa0426820 | Msa1068310 | 0.808915 | 2.449026e-50 | -8.615850e-47 |
| Msa0426820 | Msa1075080 | 0.845234 | 4.611221e-59 | -8.615850e-47 |
| Msa0426820 | Msa1075220 | 0.829757 | 4.306243e-55 | -8.615850e-47 |
| Msa0426820 | Msa1084850 | 0.804518 | 2.078347e-49 | -8.615850e-47 |
| Msa0426820 | Msa1116130 | 0.800498 | 1.401046e-48 | -8.615850e-47 |
| Msa0426820 | Msa1139000 | 0.824389 | 8.289167e-54 | -8.615850e-47 |
| Msa0426820 | Msa1144630 | 0.857225 | 1.886273e-62 | -8.615850e-47 |
| Msa0426820 | Msa1156340 | 0.814279 | 1.670286e-51 | -8.615850e-47 |
| Msa0426820 | Msa1162550 | 0.816422 | 5.577056e-52 | -8.615850e-47 |
| Msa0426820 | Msa1165700 | 0.910405 | 1.944220e-82 | -8.615850e-47 |
| Msa0426820 | Msa1166500 | 0.849693 | 2.745679e-60 | -8.615850e-47 |
| Msa0426820 | Msa1184530 | -0.817935 | 2.547013e-52 | -8.615850e-47 |
| Msa0426820 | Msa1209560 | -0.855468 | 6.181679e-62 | -8.615850e-47 |
| Msa0426820 | Msa1225730 | 0.846485 | 2.109051e-59 | -8.615850e-47 |
| Msa0426820 | Msa1246040 | -0.851849 | 6.789992e-61 | -8.615850e-47 |
| Msa0426820 | Msa1265340 | 0.831622 | 1.503900e-55 | -8.615850e-47 |
| Msa0426820 | Msa1298910 | -0.812590 | 3.927261e-51 | -8.615850e-47 |
| Msa0426820 | Msa1330530 | -0.815047 | 1.129200e-51 | -8.615850e-47 |
| Msa0426820 | Msa1363930 | 0.857358 | 1.723965e-62 | -8.615850e-47 |
| Msa0426820 | Msa1366540 | 0.855743 | 5.139880e-62 | -8.615850e-47 |
| Msa0426820 | Msa1387750 | 0.880705 | 4.402716e-70 | -8.615850e-47 |
| Msa0426820 | Msa1413570 | 0.810843 | 9.420250e-51 | -8.615850e-47 |
| Msa0426820 | Msa1416140 | 0.844922 | 5.600063e-59 | -8.615850e-47 |
| Msa0426820 | Msa1451620 | 0.837511 | 4.978226e-57 | -8.615850e-47 |
| Msa0426820 | Msa1457670 | 0.804061 | 2.587805e-49 | -8.615850e-47 |
| Msa0426820 | Msa1461810 | 0.852019 | 6.074831e-61 | -8.615850e-47 |
| Msa0426820 | Msa1463510 | 0.853321 | 2.581400e-61 | -8.615850e-47 |
| Msa0426820 | Msa1465890 | 0.841171 | 5.585487e-58 | -8.615850e-47 |
| Msa0256350 | Msa0426820 | 0.828831 | 7.224117e-55 | -8.615850e-47 |
| Msa0260270 | Msa0426820 | 0.837615 | 4.681262e-57 | -8.615850e-47 |
| Msa0266000 | Msa0426820 | 0.801755 | 7.751605e-49 | -8.615850e-47 |
| Msa0304270 | Msa0426820 | 0.821044 | 4.977608e-53 | -8.615850e-47 |
| Msa0334170 | Msa0426820 | -0.809179 | 2.149885e-50 | -8.615850e-47 |
| Msa0356880 | Msa0426820 | -0.826888 | 2.118921e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426820 | MtrunA17_Chr3g0129031 | 99.329 | 149 | 1 | 0 | 163 | 311 | 85 | 233 | 1.09e-98 | 290 |
| Msa0426820 | MtrunA17_Chr3g0129031 | 97.521 | 121 | 3 | 0 | 1 | 121 | 1 | 121 | 3.36e-79 | 240 |
| Msa0426820 | MtrunA17_Chr3g0129231 | 97.987 | 149 | 3 | 0 | 163 | 311 | 85 | 233 | 2.48e-97 | 286 |
| Msa0426820 | MtrunA17_Chr3g0129231 | 97.521 | 121 | 3 | 0 | 1 | 121 | 1 | 121 | 1.46e-78 | 239 |
| Msa0426820 | MtrunA17_Chr5g0448021 | 89.933 | 149 | 15 | 0 | 163 | 311 | 86 | 234 | 6.16e-88 | 263 |
| Msa0426820 | MtrunA17_Chr5g0448021 | 81.967 | 122 | 21 | 1 | 1 | 121 | 1 | 122 | 7.34e-64 | 201 |
| Msa0426820 | MtrunA17_Chr8g0383131 | 83.607 | 122 | 19 | 1 | 1 | 121 | 1 | 122 | 1.74e-65 | 204 |
| Msa0426820 | MtrunA17_Chr8g0383131 | 91.667 | 84 | 7 | 0 | 163 | 246 | 86 | 169 | 4.05e-46 | 154 |
| Msa0426820 | MtrunA17_Chr8g0370451 | 75.362 | 69 | 14 | 2 | 121 | 186 | 59 | 127 | 2.14e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0426820 | AT1G74060.1 | 82.550 | 149 | 26 | 0 | 163 | 311 | 85 | 233 | 2.37e-68 | 213 |
| Msa0426820 | AT1G74060.1 | 80.992 | 121 | 23 | 0 | 1 | 121 | 1 | 121 | 4.33e-63 | 199 |
| Msa0426820 | AT1G74050.1 | 82.550 | 149 | 26 | 0 | 163 | 311 | 85 | 233 | 3.08e-68 | 213 |
| Msa0426820 | AT1G74050.1 | 80.992 | 121 | 23 | 0 | 1 | 121 | 1 | 121 | 7.20e-63 | 199 |
| Msa0426820 | AT1G18540.1 | 81.208 | 149 | 28 | 0 | 163 | 311 | 85 | 233 | 1.77e-62 | 198 |
| Msa0426820 | AT1G18540.1 | 79.339 | 121 | 25 | 0 | 1 | 121 | 1 | 121 | 2.20e-61 | 195 |
Find 115 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTGCCGGAAGATTTA+AGG | 0.144333 | 3_2:-77470212 | Msa0426820:CDS |
| TCTTCTTGCCGGAAGATTTA+AGG | 0.144333 | 3_2:-77470823 | Msa0426820:CDS |
| CCGATACCCCTGATCAATTC+AGG | 0.224276 | 3_2:+77472520 | None:intergenic |
| TTTCTCAAGCAGCTTCCTTC+TGG | 0.237735 | 3_2:-77470175 | Msa0426820:CDS |
| TTTCTCAAGCAGCTTCCTTC+TGG | 0.237735 | 3_2:-77470786 | Msa0426820:CDS |
| TTTGATCATCCTTCTTCTCT+TGG | 0.241206 | 3_2:+77468578 | None:intergenic |
| TCAGGTCCATTCAAGATTAA+TGG | 0.243591 | 3_2:-77468879 | Msa0426820:intron |
| TTGATCATCCTTCTTCTCTT+GGG | 0.285928 | 3_2:+77468579 | None:intergenic |
| ACATGAGGAAAATCTTTCTT+AGG | 0.290832 | 3_2:+77468238 | None:intergenic |
| CACGAGGACAAAATATATTA+AGG | 0.307415 | 3_2:+77468302 | None:intergenic |
| ACCACCGTGCTTGGCTTTGA+TGG | 0.310980 | 3_2:+77472453 | None:intergenic |
| TACTCTTGCAGTTCTTTGCT+TGG | 0.312751 | 3_2:+77472552 | None:intergenic |
| TCTGGACTTCTTCTCGTTAC+CGG | 0.334203 | 3_2:-77470157 | Msa0426820:intron |
| TCTGGACTTCTTCTCGTTAC+CGG | 0.334203 | 3_2:-77470768 | Msa0426820:intron |
| TGTACCACAAGCGTGGGCTC+TGG | 0.340160 | 3_2:-77472477 | Msa0426820:CDS |
| TCTCTTTCCCTTAAATCTTC+CGG | 0.346788 | 3_2:+77470204 | None:intergenic |
| TCTCTTTCCCTTAAATCTTC+CGG | 0.346788 | 3_2:+77470815 | None:intergenic |
| CCCATTGAGACGTGTGAATC+AGG | 0.352065 | 3_2:-77468853 | Msa0426820:CDS |
| AACCTGAGCTTAGTGGGCTT+TGG | 0.360630 | 3_2:+77472322 | None:intergenic |
| CTTCTTGCCGGAAGATTTAA+GGG | 0.369942 | 3_2:-77470211 | Msa0426820:CDS |
| CTTCTTGCCGGAAGATTTAA+GGG | 0.369942 | 3_2:-77470822 | Msa0426820:CDS |
| CGAGTTCTTTGAGGCAGATA+AGG | 0.375748 | 3_2:-77468718 | Msa0426820:CDS |
| ACTCTTGCAGTTCTTTGCTT+GGG | 0.381464 | 3_2:+77472553 | None:intergenic |
| TGGCTTCACACCTGCCTTCA+AGG | 0.382880 | 3_2:+77468480 | None:intergenic |
| TTCAGGGCTTCCATTACTCC+TGG | 0.384116 | 3_2:-77470247 | Msa0426820:intron |
| TTCAGGGCTTCCATTACTCC+TGG | 0.384116 | 3_2:-77470858 | Msa0426820:intron |
| ACAGGCAGCTATCAACATTA+TGG | 0.385684 | 3_2:-77470569 | Msa0426820:CDS |
| AGAAGAATCAACACTGTTCC+AGG | 0.392446 | 3_2:+77470229 | None:intergenic |
| AGAAGAATCAACACTGTTCC+AGG | 0.392446 | 3_2:+77470840 | None:intergenic |
| GCCGTAACCCTGAATTGATC+AGG | 0.416781 | 3_2:-77472528 | Msa0426820:CDS |
| CTTACATTCTTTAAACAGAA+TGG | 0.423325 | 3_2:+77468164 | None:intergenic |
| CCAAGGTAAGTCTTCAAGTC+TGG | 0.429639 | 3_2:+77468514 | None:intergenic |
| AACCGAAGAAATGTCTACTT+TGG | 0.432126 | 3_2:+77468809 | None:intergenic |
| TTCGCAGTGAGCAGCGGGAC+AGG | 0.433987 | 3_2:-77470587 | Msa0426820:intron |
| ACAGTGTTGATTCTTCTTGC+CGG | 0.435433 | 3_2:-77470223 | Msa0426820:CDS |
| ACAGTGTTGATTCTTCTTGC+CGG | 0.435433 | 3_2:-77470834 | Msa0426820:CDS |
| GGCTTCTTCACATCGTCGGC+GGG | 0.438115 | 3_2:+77472364 | None:intergenic |
| GAAGCAGCAGCTTTCAGCAA+TGG | 0.450063 | 3_2:-77472578 | Msa0426820:exon |
| CCCTGATCAATTCAGGGTTA+CGG | 0.450408 | 3_2:+77472527 | None:intergenic |
| GTGAATCAGGCATATGTTAT+CGG | 0.451583 | 3_2:-77468840 | Msa0426820:CDS |
| CAACGACGCATTGCTATTAG+TGG | 0.451844 | 3_2:+77472652 | None:intergenic |
| GCCTGATTCACACGTCTCAA+TGG | 0.452522 | 3_2:+77468852 | None:intergenic |
| CAAGTCTGGAACACTGTCAA+TGG | 0.454071 | 3_2:+77468528 | None:intergenic |
| CGTCGCTAAGGCTGCAGCTC+CGG | 0.457093 | 3_2:-77472410 | Msa0426820:CDS |
| TCTATGTCTGTGCAGTTAAA+CGG | 0.457816 | 3_2:+77470485 | None:intergenic |
| AAGCATATTGTCTTCAACTA+GGG | 0.460091 | 3_2:-77472623 | Msa0426820:five_prime_UTR |
| GTACCACAAGCGTGGGCTCT+GGG | 0.465574 | 3_2:-77472476 | Msa0426820:CDS |
| CGATACCCCTGATCAATTCA+GGG | 0.465988 | 3_2:+77472521 | None:intergenic |
| TGATCATCCTTCTTCTCTTG+GGG | 0.470714 | 3_2:+77468580 | None:intergenic |
| AACTTAGGTGGCTTCTCGAC+CGG | 0.474725 | 3_2:+77472391 | None:intergenic |
| AACCAAAGTAGACATTTCTT+CGG | 0.476825 | 3_2:-77468811 | Msa0426820:CDS |
| GAGCCCACGCTTGTGGTACA+TGG | 0.479514 | 3_2:+77472480 | None:intergenic |
| CTGAGACGAACAACAGGAAA+AGG | 0.480993 | 3_2:+77470515 | None:intergenic |
| GGGACTCCATTAATCTTGAA+TGG | 0.483082 | 3_2:+77468873 | None:intergenic |
| TGAAGACTTACCTTGGTGCC+AGG | 0.485144 | 3_2:-77468507 | Msa0426820:CDS |
| CAACACTGTTCCAGGAGTAA+TGG | 0.486929 | 3_2:+77470237 | None:intergenic |
| CAACACTGTTCCAGGAGTAA+TGG | 0.486929 | 3_2:+77470848 | None:intergenic |
| CCTGATTCACACGTCTCAAT+GGG | 0.486965 | 3_2:+77468853 | None:intergenic |
| CCTGAATTGATCAGGGGTAT+CGG | 0.492309 | 3_2:-77472520 | Msa0426820:CDS |
| GGGAGAGAGCGAGTTCTTTG+AGG | 0.505471 | 3_2:-77468727 | Msa0426820:CDS |
| GAACAACAGGAAAAGGAGGA+GGG | 0.511247 | 3_2:+77470522 | None:intergenic |
| AAAGCATATTGTCTTCAACT+AGG | 0.512599 | 3_2:-77472624 | Msa0426820:five_prime_UTR |
| ACCTGCCTTCAAGGAAAACC+TGG | 0.516282 | 3_2:+77468489 | None:intergenic |
| CGAACAACAGGAAAAGGAGG+AGG | 0.521021 | 3_2:+77470521 | None:intergenic |
| TTGGGCTGGCAAAGAGCAGA+GGG | 0.534239 | 3_2:-77472684 | None:intergenic |
| GGTGACGAACCTGAGCTTAG+TGG | 0.535903 | 3_2:+77472315 | None:intergenic |
| AACAACAGGAAAAGGAGGAG+GGG | 0.540478 | 3_2:+77470523 | None:intergenic |
| GATCAAAAGACTGTTGATGC+TGG | 0.542508 | 3_2:-77468562 | Msa0426820:CDS |
| CATACTTCGCAGTGAGCAGC+GGG | 0.543286 | 3_2:-77470592 | Msa0426820:intron |
| TGGCCCAGAGCCCACGCTTG+TGG | 0.545998 | 3_2:+77472473 | None:intergenic |
| GATCATCCTTCTTCTCTTGG+GGG | 0.548827 | 3_2:+77468581 | None:intergenic |
| CATTATGGATATGCCGGTGG+CGG | 0.552307 | 3_2:-77470554 | Msa0426820:CDS |
| TCGTCGGCGGGGTAAAACTT+AGG | 0.552424 | 3_2:+77472376 | None:intergenic |
| GCTTTGGCTTGTGCTTGTTG+CGG | 0.553049 | 3_2:+77472338 | None:intergenic |
| CCGTAACCCTGAATTGATCA+GGG | 0.555623 | 3_2:-77472527 | Msa0426820:CDS |
| AACGACGCATTGCTATTAGT+GGG | 0.557323 | 3_2:+77472653 | None:intergenic |
| AGCCAAAGCCCACTAAGCTC+AGG | 0.559866 | 3_2:-77472324 | Msa0426820:intron |
| CCAGACTTGAAGACTTACCT+TGG | 0.561891 | 3_2:-77468514 | Msa0426820:CDS |
| TCGTCACGATCCCGTCGCTA+AGG | 0.562513 | 3_2:-77472422 | Msa0426820:CDS |
| TTCCTGTTGTTCGTCTCAGG+GGG | 0.563520 | 3_2:-77470511 | Msa0426820:CDS |
| TATCAACATTATGGATATGC+CGG | 0.567709 | 3_2:-77470560 | Msa0426820:CDS |
| GGAGCTGCAGCCTTAGCGAC+GGG | 0.567898 | 3_2:+77472412 | None:intergenic |
| GGGGTATCGGAAAATACTCT+AGG | 0.568283 | 3_2:-77472507 | Msa0426820:CDS |
| TGGCTTCTTCACATCGTCGG+CGG | 0.569896 | 3_2:+77472363 | None:intergenic |
| GTGACGAACCTGAGCTTAGT+GGG | 0.585384 | 3_2:+77472316 | None:intergenic |
| TTTCCTGTTGTTCGTCTCAG+GGG | 0.586318 | 3_2:-77470512 | Msa0426820:CDS |
| CGGAGCTGCAGCCTTAGCGA+CGG | 0.590166 | 3_2:+77472411 | None:intergenic |
| GTCTTCAACTAGGGTTTACG+AGG | 0.592135 | 3_2:-77472614 | Msa0426820:five_prime_UTR |
| GGCTTGTGCTTGTTGCGGAG+TGG | 0.594085 | 3_2:+77472343 | None:intergenic |
| TGATGACAAGTACTTCTCAA+AGG | 0.595456 | 3_2:-77468772 | Msa0426820:CDS |
| GTTGGGCTGGCAAAGAGCAG+AGG | 0.596216 | 3_2:-77472685 | None:intergenic |
| GTTCTTTGAGGCAGATAAGG+AGG | 0.599942 | 3_2:-77468715 | Msa0426820:intron |
| CTCTAGAAGACCAACTCGTG+TGG | 0.601883 | 3_2:+77468460 | None:intergenic |
| GAGTGGCTTCTTCACATCGT+CGG | 0.602023 | 3_2:+77472360 | None:intergenic |
| TGGGCCATCAAAGCCAAGCA+CGG | 0.612265 | 3_2:-77472457 | Msa0426820:CDS |
| CCATACTTCGCAGTGAGCAG+CGG | 0.617599 | 3_2:-77470593 | Msa0426820:intron |
| CTGCCATGTACCACAAGCGT+GGG | 0.619476 | 3_2:-77472483 | Msa0426820:CDS |
| GTAACGAGAAGAAGTCCAGA+AGG | 0.620622 | 3_2:+77470160 | None:intergenic |
| GTAACGAGAAGAAGTCCAGA+AGG | 0.620622 | 3_2:+77470771 | None:intergenic |
| ACAACAGGAAAAGGAGGAGG+GGG | 0.626775 | 3_2:+77470524 | None:intergenic |
| CACACGAGTTGGTCTTCTAG+AGG | 0.630211 | 3_2:-77468459 | Msa0426820:exon |
| AGGTGTGAAGCCACACGAGT+TGG | 0.631048 | 3_2:-77468470 | Msa0426820:CDS |
| TTAGCGACGGGATCGTGACG+AGG | 0.633658 | 3_2:+77472424 | None:intergenic |
| GCTTCTTCACATCGTCGGCG+GGG | 0.637997 | 3_2:+77472365 | None:intergenic |
| TCTGCCATGTACCACAAGCG+TGG | 0.639753 | 3_2:-77472484 | Msa0426820:CDS |
| TCAAGGAAAACCTGGCACCA+AGG | 0.644709 | 3_2:+77468497 | None:intergenic |
| GGCTGGCAAAGAGCAGAGGG+AGG | 0.649035 | 3_2:-77472681 | None:intergenic |
| CAACATTATGGATATGCCGG+TGG | 0.651940 | 3_2:-77470557 | Msa0426820:CDS |
| AGACGAACAACAGGAAAAGG+AGG | 0.652874 | 3_2:+77470518 | None:intergenic |
| TCGGCGGGGTAAAACTTAGG+TGG | 0.654802 | 3_2:+77472379 | None:intergenic |
| TAGCGACGGGATCGTGACGA+GGG | 0.688534 | 3_2:+77472425 | None:intergenic |
| TCTTCAACTAGGGTTTACGA+GGG | 0.690171 | 3_2:-77472613 | Msa0426820:five_prime_UTR |
| CGTAACCCTGAATTGATCAG+GGG | 0.696777 | 3_2:-77472526 | Msa0426820:CDS |
| ATAAAACAAGATGGTTCACG+AGG | 0.707506 | 3_2:+77468286 | None:intergenic |
| GCCATCAAAGCCAAGCACGG+TGG | 0.747137 | 3_2:-77472454 | Msa0426820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATACAAATTTTCATA+GGG | - | chr3_2:77468991-77469010 | Msa0426820:intron | 10.0% |
| ! | CCCCCCCCCCCCCCCCCCCC+CGG | + | chr3_2:77469561-77469580 | None:intergenic | 100.0% |
| ! | CCGGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:77469559-77469578 | Msa0426820:intron | 100.0% |
| ! | CGGGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:77469560-77469579 | Msa0426820:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:77469561-77469580 | Msa0426820:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:77469561-77469580 | Msa0426820:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:77469561-77469580 | Msa0426820:intron | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:77469561-77469580 | Msa0426820:intron | 100.0% |
| !!! | TAAATCTTTTTGAATAAAGT+TGG | - | chr3_2:77468567-77468586 | Msa0426820:CDS | 15.0% |
| !! | TATTGTTAATTATGATATGT+TGG | - | chr3_2:77468698-77468717 | Msa0426820:intron | 15.0% |
| !!! | GAAAATATACAAATTTTCAT+AGG | - | chr3_2:77468990-77469009 | Msa0426820:intron | 15.0% |
| !! | ATGATAAAATTTATGATGTT+AGG | - | chr3_2:77469454-77469473 | Msa0426820:intron | 15.0% |
| !! | TTATCAATAGAAATGAACAA+CGG | + | chr3_2:77468550-77468569 | None:intergenic | 20.0% |
| !!! | TGTATTTTGAAGTTCAAATA+TGG | - | chr3_2:77468794-77468813 | Msa0426820:CDS | 20.0% |
| !!! | AAATTTGAGATTTGATTCAT+TGG | - | chr3_2:77468937-77468956 | Msa0426820:intron | 20.0% |
| !!! | AATTTTGTTAGTGTCTATAT+TGG | - | chr3_2:77469901-77469920 | Msa0426820:intron | 20.0% |
| !! | TGAATGATTTATATAGTTCA+TGG | - | chr3_2:77469953-77469972 | Msa0426820:intron | 20.0% |
| !! | TAAACCAAAAAAACAATTAC+CGG | + | chr3_2:77470095-77470114 | None:intergenic | 20.0% |
| !!! | GTAATTGTTTTTTTGGTTTA+AGG | - | chr3_2:77470095-77470114 | Msa0426820:intron | 20.0% |
| !!! | AATTTTGTTAGTGTCTATAT+TGG | - | chr3_2:77469901-77469920 | Msa0426820:intron | 20.0% |
| !! | TGAATGATTTATATAGTTCA+TGG | - | chr3_2:77469953-77469972 | Msa0426820:intron | 20.0% |
| !! | TAAACCAAAAAAACAATTAC+CGG | + | chr3_2:77470095-77470114 | None:intergenic | 20.0% |
| !!! | GTAATTGTTTTTTTGGTTTA+AGG | - | chr3_2:77470095-77470114 | Msa0426820:intron | 20.0% |
| !!! | CACAAATACGTAAATAATTT+TGG | + | chr3_2:77470832-77470851 | None:intergenic | 20.0% |
| !! | ATCAAATCTAAAGGTTTAAA+TGG | + | chr3_2:77470958-77470977 | None:intergenic | 20.0% |
| !! | TAATTTATTCTTTCTCAAGA+AGG | - | chr3_2:77471235-77471254 | Msa0426820:intron | 20.0% |
| !!! | TGGAGATATACATATAATTT+TGG | - | chr3_2:77471292-77471311 | Msa0426820:intron | 20.0% |
| !!! | TTTAGACATTATTTTGAAAC+TGG | + | chr3_2:77471530-77471549 | None:intergenic | 20.0% |
| !! | AAGAAAACAAGAAATAAGAA+AGG | - | chr3_2:77471672-77471691 | Msa0426820:intron | 20.0% |
| !! | AGAAAACAAGAAATAAGAAA+GGG | - | chr3_2:77471673-77471692 | Msa0426820:intron | 20.0% |
| !! | TTCAAAAACATAAAACAAGA+TGG | + | chr3_2:77472567-77472586 | None:intergenic | 20.0% |
| ! | GTTAATTATGATATGTTGGA+CGG | - | chr3_2:77468702-77468721 | Msa0426820:intron | 25.0% |
| !!! | GAAATGGATTTTGTGAATAA+AGG | - | chr3_2:77468724-77468743 | Msa0426820:CDS | 25.0% |
| !! | TGAAGTTCAAATATGGATTT+TGG | - | chr3_2:77468801-77468820 | Msa0426820:CDS | 25.0% |
| !! | GAAGTTCAAATATGGATTTT+GGG | - | chr3_2:77468802-77468821 | Msa0426820:CDS | 25.0% |
| !! | AAGTTCAAATATGGATTTTG+GGG | - | chr3_2:77468803-77468822 | Msa0426820:CDS | 25.0% |
| !!! | TTGAGTTGTTTTAGAATTCT+TGG | - | chr3_2:77468869-77468888 | Msa0426820:CDS | 25.0% |
| !!! | TGAGTTGTTTTAGAATTCTT+GGG | - | chr3_2:77468870-77468889 | Msa0426820:CDS | 25.0% |
| !! | ATACAAATTTTCATAGGGTT+AGG | - | chr3_2:77468996-77469015 | Msa0426820:intron | 25.0% |
| !! | TACAAATTTTCATAGGGTTA+GGG | - | chr3_2:77468997-77469016 | Msa0426820:intron | 25.0% |
| ! | GTGAATATATGGAAAATATG+CGG | - | chr3_2:77469090-77469109 | Msa0426820:intron | 25.0% |
| ! | TGAATATATGGAAAATATGC+GGG | - | chr3_2:77469091-77469110 | Msa0426820:intron | 25.0% |
| !!! | TTTAAATGCTGTTTCGTTTT+TGG | - | chr3_2:77469418-77469437 | Msa0426820:intron | 25.0% |
| ! | AGGAATTGAAATTAAGTATC+AGG | - | chr3_2:77469474-77469493 | Msa0426820:intron | 25.0% |
| ! | AATTAAGTATCAGGAAAACA+TGG | - | chr3_2:77469483-77469502 | Msa0426820:intron | 25.0% |
| ! | ATTAAGTATCAGGAAAACAT+GGG | - | chr3_2:77469484-77469503 | Msa0426820:intron | 25.0% |
| !! | TTTTATTAACATGTGTTGAG+TGG | - | chr3_2:77469517-77469536 | Msa0426820:intron | 25.0% |
| ! | TTTATTAACATGTGTTGAGT+GGG | - | chr3_2:77469518-77469537 | Msa0426820:intron | 25.0% |
| !!! | ACATAGACATTTTGAAGTTT+TGG | - | chr3_2:77469763-77469782 | Msa0426820:intron | 25.0% |
| ! | GTACAACAAGCAAATATATA+TGG | + | chr3_2:77470164-77470183 | None:intergenic | 25.0% |
| !!! | ATAGACATTTTGAAGTTCTT+TGG | - | chr3_2:77470374-77470393 | Msa0426820:intron | 25.0% |
| ! | GTACAACAAGCAAATATATA+TGG | + | chr3_2:77470164-77470183 | None:intergenic | 25.0% |
| ! | TGTACTACAATCAAATCTAA+AGG | + | chr3_2:77470967-77470986 | None:intergenic | 25.0% |
| ! | TTTGAATGTTTACACACTTA+TGG | + | chr3_2:77471181-77471200 | None:intergenic | 25.0% |
| ! | AAAATTGCTTCTTATACATG+TGG | - | chr3_2:77471212-77471231 | Msa0426820:intron | 25.0% |
| !! | AATTAAGTTTTTCACCTTTG+AGG | + | chr3_2:77471809-77471828 | None:intergenic | 25.0% |
| ! | AACAACAACATTGTAAAGAT+CGG | + | chr3_2:77472217-77472236 | None:intergenic | 25.0% |
| !! | GTTTTCATTCACAATTTTCT+TGG | - | chr3_2:77472471-77472490 | Msa0426820:CDS | 25.0% |
| !! | AACTTGTATTTTATGTTCTC+TGG | - | chr3_2:77472510-77472529 | Msa0426820:CDS | 25.0% |
| !! | TGGTGAATTTTGAACATAAT+AGG | + | chr3_2:77472660-77472679 | None:intergenic | 25.0% |
| ! | CTTACATTCTTTAAACAGAA+TGG | + | chr3_2:77472680-77472699 | None:intergenic | 25.0% |
| AAAGCATATTGTCTTCAACT+AGG | - | chr3_2:77468217-77468236 | Msa0426820:three_prime_UTR | 30.0% | |
| AAGCATATTGTCTTCAACTA+GGG | - | chr3_2:77468218-77468237 | Msa0426820:three_prime_UTR | 30.0% | |
| TACGAATTGAATATTACCAC+CGG | - | chr3_2:77468591-77468610 | Msa0426820:CDS | 30.0% | |
| TAGATACACTTTGAATTTGC+CGG | + | chr3_2:77468613-77468632 | None:intergenic | 30.0% | |
| ! | TGGATTTTGTGAATAAAGGA+TGG | - | chr3_2:77468728-77468747 | Msa0426820:CDS | 30.0% |
| ACTTCAAAATACAGTTAGCA+GGG | + | chr3_2:77468787-77468806 | None:intergenic | 30.0% | |
| AACTTCAAAATACAGTTAGC+AGG | + | chr3_2:77468788-77468807 | None:intergenic | 30.0% | |
| ! | GGTTTGATTTATGTGTGATT+AGG | - | chr3_2:77468824-77468843 | Msa0426820:CDS | 30.0% |
| TTAGGAATTGTATTCGTGTT+TGG | - | chr3_2:77468842-77468861 | Msa0426820:CDS | 30.0% | |
| TAGGAATTGTATTCGTGTTT+GGG | - | chr3_2:77468843-77468862 | Msa0426820:CDS | 30.0% | |
| TGATATTAAACACGCACATA+GGG | - | chr3_2:77469034-77469053 | Msa0426820:intron | 30.0% | |
| CGAATCTTTCTGTGAATATA+TGG | - | chr3_2:77469079-77469098 | Msa0426820:intron | 30.0% | |
| CAAGCTAAACAACATCAAAA+AGG | + | chr3_2:77469295-77469314 | None:intergenic | 30.0% | |
| TAAACCAATAGAGTGTACTA+AGG | + | chr3_2:77469374-77469393 | None:intergenic | 30.0% | |
| !! | TTAGTACACTCTATTGGTTT+AGG | - | chr3_2:77469373-77469392 | Msa0426820:intron | 30.0% |
| TTATTAACATGTGTTGAGTG+GGG | - | chr3_2:77469519-77469538 | Msa0426820:intron | 30.0% | |
| TATCAACATTATGGATATGC+CGG | - | chr3_2:77469672-77469691 | Msa0426820:intron | 30.0% | |
| !!! | TAGTTCATGGTTTTGTTTTC+AGG | - | chr3_2:77469966-77469985 | Msa0426820:intron | 30.0% |
| !!! | AGTTCATGGTTTTGTTTTCA+GGG | - | chr3_2:77469967-77469986 | Msa0426820:intron | 30.0% |
| !!! | GTTACCGGTAATTGTTTTTT+TGG | - | chr3_2:77470088-77470107 | Msa0426820:intron | 30.0% |
| TTCATGTTATTACCTGAGAT+TGG | - | chr3_2:77470128-77470147 | Msa0426820:intron | 30.0% | |
| TGCATCATCAATATAACTCA+TGG | + | chr3_2:77470186-77470205 | None:intergenic | 30.0% | |
| TATCAACATTATGGATATGC+CGG | - | chr3_2:77469672-77469691 | Msa0426820:intron | 30.0% | |
| !!! | TAGTTCATGGTTTTGTTTTC+AGG | - | chr3_2:77469966-77469985 | Msa0426820:intron | 30.0% |
| !!! | AGTTCATGGTTTTGTTTTCA+GGG | - | chr3_2:77469967-77469986 | Msa0426820:intron | 30.0% |
| !!! | GTTACCGGTAATTGTTTTTT+TGG | - | chr3_2:77470088-77470107 | Msa0426820:intron | 30.0% |
| TTCATGTTATTACCTGAGAT+TGG | - | chr3_2:77470128-77470147 | Msa0426820:intron | 30.0% | |
| TGCATCATCAATATAACTCA+TGG | + | chr3_2:77470186-77470205 | None:intergenic | 30.0% | |
| GATTGAAACTAAATCAACCT+TGG | - | chr3_2:77470851-77470870 | Msa0426820:CDS | 30.0% | |
| ! | AAGTAATGACTTGTGAGATA+TGG | - | chr3_2:77470908-77470927 | Msa0426820:intron | 30.0% |
| ACAATAGAGACTGTCATATT+TGG | - | chr3_2:77470931-77470950 | Msa0426820:intron | 30.0% | |
| GAAGAAAAAGATAGTCCTAT+AGG | - | chr3_2:77470990-77471009 | Msa0426820:intron | 30.0% | |
| AATGTAGCTAAGGATGATTA+CGG | + | chr3_2:77471323-77471342 | None:intergenic | 30.0% | |
| AGTAAATGTGAATGTAGCTA+AGG | + | chr3_2:77471333-77471352 | None:intergenic | 30.0% | |
| ! | CATGAGTCTACATTACATTT+TGG | - | chr3_2:77471411-77471430 | Msa0426820:intron | 30.0% |
| ! | TTTTCTTACATTACAGCTTC+GGG | + | chr3_2:77471659-77471678 | None:intergenic | 30.0% |
| ! | GTTTTCTTACATTACAGCTT+CGG | + | chr3_2:77471660-77471679 | None:intergenic | 30.0% |
| AAAGGGTGAAAAAGCAAATA+TGG | - | chr3_2:77471690-77471709 | Msa0426820:intron | 30.0% | |
| AAGGGTGAAAAAGCAAATAT+GGG | - | chr3_2:77471691-77471710 | Msa0426820:intron | 30.0% | |
| AAATATGGGGGTTAATGATA+AGG | - | chr3_2:77471705-77471724 | Msa0426820:intron | 30.0% | |
| TAATGATAAGGAAAGTAGGT+AGG | - | chr3_2:77471717-77471736 | Msa0426820:intron | 30.0% | |
| GAGAATGAACAAATGAAGAT+TGG | + | chr3_2:77471936-77471955 | None:intergenic | 30.0% | |
| AACCAAAGTAGACATTTCTT+CGG | - | chr3_2:77472030-77472049 | Msa0426820:intron | 30.0% | |
| !!! | GAGCACTTTTTTATCCTAAA+AGG | + | chr3_2:77472241-77472260 | None:intergenic | 30.0% |
| TGACAGACAACAAAAATCAA+GGG | + | chr3_2:77472437-77472456 | None:intergenic | 30.0% | |
| TTGACAGACAACAAAAATCA+AGG | + | chr3_2:77472438-77472457 | None:intergenic | 30.0% | |
| !! | TTTTTGTTGTCTGTCAAACT+TGG | - | chr3_2:77472441-77472460 | Msa0426820:CDS | 30.0% |
| CACGAGGACAAAATATATTA+AGG | + | chr3_2:77472542-77472561 | None:intergenic | 30.0% | |
| !!! | TGTTTTTGAAGCTTTATTGC+TGG | - | chr3_2:77472577-77472596 | Msa0426820:exon | 30.0% |
| ACATGAGGAAAATCTTTCTT+AGG | + | chr3_2:77472606-77472625 | None:intergenic | 30.0% | |
| TATGATATGTTGGACGGAAA+TGG | - | chr3_2:77468708-77468727 | Msa0426820:intron | 35.0% | |
| GTGAATAAAGGATGGAGAAA+CGG | - | chr3_2:77468736-77468755 | Msa0426820:CDS | 35.0% | |
| TGAATAAAGGATGGAGAAAC+GGG | - | chr3_2:77468737-77468756 | Msa0426820:CDS | 35.0% | |
| ! | AAAGTATGGAAGTATGGTGT+AGG | - | chr3_2:77468760-77468779 | Msa0426820:CDS | 35.0% |
| GTGATATTAAACACGCACAT+AGG | - | chr3_2:77469033-77469052 | Msa0426820:intron | 35.0% | |
| TCAAGACACAGACTATTAGT+TGG | + | chr3_2:77469340-77469359 | None:intergenic | 35.0% | |
| AATAGTCTGTGTCTTGATTG+TGG | - | chr3_2:77469343-77469362 | Msa0426820:intron | 35.0% | |
| TATTAACATGTGTTGAGTGG+GGG | - | chr3_2:77469520-77469539 | Msa0426820:intron | 35.0% | |
| !!! | TGAGTGGGGGATATTTTTTT+TGG | - | chr3_2:77469533-77469552 | Msa0426820:intron | 35.0% |
| !!! | GAGTGGGGGATATTTTTTTT+GGG | - | chr3_2:77469534-77469553 | Msa0426820:intron | 35.0% |
| !!! | GGGATATTTTTTTTGGGTAC+CGG | - | chr3_2:77469540-77469559 | Msa0426820:intron | 35.0% |
| !!! | GGATATTTTTTTTGGGTACC+GGG | - | chr3_2:77469541-77469560 | Msa0426820:intron | 35.0% |
| !!! | GATATTTTTTTTGGGTACCG+GGG | - | chr3_2:77469542-77469561 | Msa0426820:intron | 35.0% |
| !!! | ATATTTTTTTTGGGTACCGG+GGG | - | chr3_2:77469543-77469562 | Msa0426820:intron | 35.0% |
| CTCAAAGAGACAAAGAATGA+TGG | - | chr3_2:77469608-77469627 | Msa0426820:intron | 35.0% | |
| TCTATGTCTGTGCAGTTAAA+CGG | + | chr3_2:77469750-77469769 | None:intergenic | 35.0% | |
| TCTCTTTCCCTTAAATCTTC+CGG | + | chr3_2:77470029-77470048 | None:intergenic | 35.0% | |
| TCCATCATTCTTTGTCTCTT+TGG | + | chr3_2:77469612-77469631 | None:intergenic | 35.0% | |
| TCTATGTCTGTGCAGTTAAA+CGG | + | chr3_2:77469750-77469769 | None:intergenic | 35.0% | |
| TCTCTTTCCCTTAAATCTTC+CGG | + | chr3_2:77470029-77470048 | None:intergenic | 35.0% | |
| GGAACATAAAATACTGACCA+AGG | + | chr3_2:77470871-77470890 | None:intergenic | 35.0% | |
| ! | TGGTCAGTATTTTATGTTCC+AGG | - | chr3_2:77470871-77470890 | Msa0426820:intron | 35.0% |
| ! | GGTCAGTATTTTATGTTCCA+GGG | - | chr3_2:77470872-77470891 | Msa0426820:intron | 35.0% |
| CAACTCACTTTCTAACCTAT+AGG | + | chr3_2:77471008-77471027 | None:intergenic | 35.0% | |
| !! | TGTGTTAGGTTGAAAAGTGA+AGG | - | chr3_2:77471055-77471074 | Msa0426820:intron | 35.0% |
| CTTCTGCTTCTTAGTAAACA+TGG | - | chr3_2:77471272-77471291 | Msa0426820:intron | 35.0% | |
| TACAAGAAGGGTAGATGAAA+TGG | + | chr3_2:77471390-77471409 | None:intergenic | 35.0% | |
| GTAGACTCATGATACAAGAA+GGG | + | chr3_2:77471402-77471421 | None:intergenic | 35.0% | |
| TGTAGACTCATGATACAAGA+AGG | + | chr3_2:77471403-77471422 | None:intergenic | 35.0% | |
| AGTAAGGGATCTCAATAGTT+GGG | - | chr3_2:77471471-77471490 | Msa0426820:intron | 35.0% | |
| TTAAGCCACAATGAGTTGTT+CGG | + | chr3_2:77471503-77471522 | None:intergenic | 35.0% | |
| TTAGTTGGATGAAGATCAGA+TGG | + | chr3_2:77471561-77471580 | None:intergenic | 35.0% | |
| ! | ATCAAACTTATCGTTCTGAG+CGG | - | chr3_2:77471618-77471637 | Msa0426820:intron | 35.0% |
| TTTCTTACATTACAGCTTCG+GGG | + | chr3_2:77471658-77471677 | None:intergenic | 35.0% | |
| AGGGTGAAAAAGCAAATATG+GGG | - | chr3_2:77471692-77471711 | Msa0426820:intron | 35.0% | |
| GGGTTAATGATAAGGAAAGT+AGG | - | chr3_2:77471713-77471732 | Msa0426820:intron | 35.0% | |
| AAAGTTGAACAACAACCCAA+TGG | + | chr3_2:77471766-77471785 | None:intergenic | 35.0% | |
| TCAACTTTGACAAGCAAAAC+AGG | - | chr3_2:77471778-77471797 | Msa0426820:intron | 35.0% | |
| GAGACTAAAGAAGGTCTTTA+AGG | + | chr3_2:77471900-77471919 | None:intergenic | 35.0% | |
| ATTAATCTTGAATGGACCTG+AGG | + | chr3_2:77471963-77471982 | None:intergenic | 35.0% | |
| TCAGGTCCATTCAAGATTAA+TGG | - | chr3_2:77471962-77471981 | Msa0426820:intron | 35.0% | |
| GTGAATCAGGCATATGTTAT+CGG | - | chr3_2:77472001-77472020 | Msa0426820:intron | 35.0% | |
| AACCGAAGAAATGTCTACTT+TGG | + | chr3_2:77472035-77472054 | None:intergenic | 35.0% | |
| TGATGACAAGTACTTCTCAA+AGG | - | chr3_2:77472069-77472088 | Msa0426820:intron | 35.0% | |
| ATCCCAGAAAAAGACTAAGA+AGG | - | chr3_2:77472093-77472112 | Msa0426820:intron | 35.0% | |
| TCCCAGAAAAAGACTAAGAA+GGG | - | chr3_2:77472094-77472113 | Msa0426820:intron | 35.0% | |
| !! | TCCCTTCTTAGTCTTTTTCT+GGG | + | chr3_2:77472098-77472117 | None:intergenic | 35.0% |
| TTGTAAAGATCGGCATACAA+AGG | + | chr3_2:77472207-77472226 | None:intergenic | 35.0% | |
| !! | CAATGTTGTTGTTGCCTTTT+AGG | - | chr3_2:77472224-77472243 | Msa0426820:intron | 35.0% |
| TTGATCATCCTTCTTCTCTT+GGG | + | chr3_2:77472265-77472284 | None:intergenic | 35.0% | |
| TTTGATCATCCTTCTTCTCT+TGG | + | chr3_2:77472266-77472285 | None:intergenic | 35.0% | |
| ATAAAACAAGATGGTTCACG+AGG | + | chr3_2:77472558-77472577 | None:intergenic | 35.0% | |
| ! | TCAGTTTTGCAAAGTACATG+AGG | + | chr3_2:77472621-77472640 | None:intergenic | 35.0% |
| ! | AACGACGCATTGCTATTAGT+GGG | + | chr3_2:77468191-77468210 | None:intergenic | 40.0% |
| TCTTCAACTAGGGTTTACGA+GGG | - | chr3_2:77468228-77468247 | Msa0426820:three_prime_UTR | 40.0% | |
| ACTCTTGCAGTTCTTTGCTT+GGG | + | chr3_2:77468291-77468310 | None:intergenic | 40.0% | |
| TACTCTTGCAGTTCTTTGCT+TGG | + | chr3_2:77468292-77468311 | None:intergenic | 40.0% | |
| ATACACTTTGAATTTGCCGG+TGG | + | chr3_2:77468610-77468629 | None:intergenic | 40.0% | |
| ! | AACGGGAAAGTATGGAAGTA+TGG | - | chr3_2:77468754-77468773 | Msa0426820:CDS | 40.0% |
| TGCTTTCGTCCATGTGTTTA+CGG | - | chr3_2:77469134-77469153 | Msa0426820:intron | 40.0% | |
| !! | CTTTCTGAGCTTTGTTAGTC+TGG | - | chr3_2:77469212-77469231 | Msa0426820:intron | 40.0% |
| !! | AGCTTTGTTAGTCTGGTGTT+AGG | - | chr3_2:77469219-77469238 | Msa0426820:intron | 40.0% |
| !! | TTTAGCTTGTGTGCTCTGTT+TGG | - | chr3_2:77469306-77469325 | Msa0426820:intron | 40.0% |
| CCAATAGAGTGTACTAAGGA+TGG | + | chr3_2:77469370-77469389 | None:intergenic | 40.0% | |
| CCATCCTTAGTACACTCTAT+TGG | - | chr3_2:77469367-77469386 | Msa0426820:intron | 40.0% | |
| !! | GTACACTCTATTGGTTTAGG+TGG | - | chr3_2:77469376-77469395 | Msa0426820:intron | 40.0% |
| AGTATCAGGAAAACATGGGT+TGG | - | chr3_2:77469488-77469507 | Msa0426820:intron | 40.0% | |
| !!! | TATTTTTTTTGGGTACCGGG+GGG | - | chr3_2:77469544-77469563 | Msa0426820:intron | 40.0% |
| ACAGGCAGCTATCAACATTA+TGG | - | chr3_2:77469663-77469682 | Msa0426820:intron | 40.0% | |
| ! | TTTTCCTGTTGTTCGTCTCA+GGG | - | chr3_2:77469719-77469738 | Msa0426820:intron | 40.0% |
| AGAAGAATCAACACTGTTCC+AGG | + | chr3_2:77470004-77470023 | None:intergenic | 40.0% | |
| !! | ACAGTGTTGATTCTTCTTGC+CGG | - | chr3_2:77470007-77470026 | Msa0426820:intron | 40.0% |
| TCTTCTTGCCGGAAGATTTA+AGG | - | chr3_2:77470018-77470037 | Msa0426820:intron | 40.0% | |
| CTTCTTGCCGGAAGATTTAA+GGG | - | chr3_2:77470019-77470038 | Msa0426820:intron | 40.0% | |
| GGTTACATACAACCAATCTC+AGG | + | chr3_2:77470143-77470162 | None:intergenic | 40.0% | |
| GCCAAAGAGACAAAGAATGA+TGG | - | chr3_2:77470217-77470236 | Msa0426820:CDS | 40.0% | |
| ACAGGCAGCTATCAACATTA+TGG | - | chr3_2:77469663-77469682 | Msa0426820:intron | 40.0% | |
| ! | TTTTCCTGTTGTTCGTCTCA+GGG | - | chr3_2:77469719-77469738 | Msa0426820:intron | 40.0% |
| AGAAGAATCAACACTGTTCC+AGG | + | chr3_2:77470004-77470023 | None:intergenic | 40.0% | |
| !! | ACAGTGTTGATTCTTCTTGC+CGG | - | chr3_2:77470007-77470026 | Msa0426820:intron | 40.0% |
| TCTTCTTGCCGGAAGATTTA+AGG | - | chr3_2:77470018-77470037 | Msa0426820:intron | 40.0% | |
| CTTCTTGCCGGAAGATTTAA+GGG | - | chr3_2:77470019-77470038 | Msa0426820:intron | 40.0% | |
| GGTTACATACAACCAATCTC+AGG | + | chr3_2:77470143-77470162 | None:intergenic | 40.0% | |
| ACTTGTCTAACTGATATCCC+TGG | + | chr3_2:77470892-77470911 | None:intergenic | 40.0% | |
| GTTAGAAAGTGAGTTGCTGT+TGG | - | chr3_2:77471012-77471031 | Msa0426820:intron | 40.0% | |
| GTTCGGTAAATCACTGTGTT+AGG | - | chr3_2:77471041-77471060 | Msa0426820:intron | 40.0% | |
| ! | CATGTTTTCCTTGACTGTTG+CGG | + | chr3_2:77471446-77471465 | None:intergenic | 40.0% |
| AGGAAAACATGCAGTCAGTA+AGG | - | chr3_2:77471455-77471474 | Msa0426820:intron | 40.0% | |
| GGAAAACATGCAGTCAGTAA+GGG | - | chr3_2:77471456-77471475 | Msa0426820:intron | 40.0% | |
| CAGTAAGGGATCTCAATAGT+TGG | - | chr3_2:77471470-77471489 | Msa0426820:intron | 40.0% | |
| TGTGAATCTCAGTCGTTAGT+TGG | + | chr3_2:77471576-77471595 | None:intergenic | 40.0% | |
| GCTCAGAACGATAAGTTTGA+TGG | + | chr3_2:77471619-77471638 | None:intergenic | 40.0% | |
| GGGTGAAAAAGCAAATATGG+GGG | - | chr3_2:77471693-77471712 | Msa0426820:intron | 40.0% | |
| ACAACAATGCAACAGCCATT+GGG | - | chr3_2:77471748-77471767 | Msa0426820:intron | 40.0% | |
| CAAAACAGGACAAACCTCAA+AGG | - | chr3_2:77471792-77471811 | Msa0426820:intron | 40.0% | |
| AGATGAGAGGAGACTAAAGA+AGG | + | chr3_2:77471909-77471928 | None:intergenic | 40.0% | |
| TTGTTCATTCTCACTTCCTC+AGG | - | chr3_2:77471944-77471963 | Msa0426820:intron | 40.0% | |
| GGGACTCCATTAATCTTGAA+TGG | + | chr3_2:77471971-77471990 | None:intergenic | 40.0% | |
| !! | CTCCCTTCTTAGTCTTTTTC+TGG | + | chr3_2:77472099-77472118 | None:intergenic | 40.0% |
| TGATCATCCTTCTTCTCTTG+GGG | + | chr3_2:77472264-77472283 | None:intergenic | 40.0% | |
| GATCAAAAGACTGTTGATGC+TGG | - | chr3_2:77472279-77472298 | Msa0426820:intron | 40.0% | |
| ! | CAACGACGCATTGCTATTAG+TGG | + | chr3_2:77468192-77468211 | None:intergenic | 45.0% |
| GTCTTCAACTAGGGTTTACG+AGG | - | chr3_2:77468227-77468246 | Msa0426820:three_prime_UTR | 45.0% | |
| CCCTGATCAATTCAGGGTTA+CGG | + | chr3_2:77468317-77468336 | None:intergenic | 45.0% | |
| CCGTAACCCTGAATTGATCA+GGG | - | chr3_2:77468314-77468333 | Msa0426820:three_prime_UTR | 45.0% | |
| CGTAACCCTGAATTGATCAG+GGG | - | chr3_2:77468315-77468334 | Msa0426820:three_prime_UTR | 45.0% | |
| CGATACCCCTGATCAATTCA+GGG | + | chr3_2:77468323-77468342 | None:intergenic | 45.0% | |
| ! | CCTGAATTGATCAGGGGTAT+CGG | - | chr3_2:77468321-77468340 | Msa0426820:three_prime_UTR | 45.0% |
| !! | GGGGTATCGGAAAATACTCT+AGG | - | chr3_2:77468334-77468353 | Msa0426820:three_prime_UTR | 45.0% |
| GATGGAGAAACGGGAAAGTA+TGG | - | chr3_2:77468746-77468765 | Msa0426820:CDS | 45.0% | |
| GTAAACACATGGACGAAAGC+AGG | + | chr3_2:77469135-77469154 | None:intergenic | 45.0% | |
| TTCGTCCATGTGTTTACGGT+CGG | - | chr3_2:77469138-77469157 | Msa0426820:intron | 45.0% | |
| GAAAAACAACACGAGTGCGA+CGG | + | chr3_2:77469187-77469206 | None:intergenic | 45.0% | |
| !! | AGGAAAACATGGGTTGGCTT+TGG | - | chr3_2:77469494-77469513 | Msa0426820:intron | 45.0% |
| !!! | ATTTTTTTTGGGTACCGGGG+GGG | - | chr3_2:77469545-77469564 | Msa0426820:intron | 45.0% |
| CTCACTGCGAAGTATGGATT+GGG | + | chr3_2:77469636-77469655 | None:intergenic | 45.0% | |
| CAACATTATGGATATGCCGG+TGG | - | chr3_2:77469675-77469694 | Msa0426820:intron | 45.0% | |
| AACAACAGGAAAAGGAGGAG+GGG | + | chr3_2:77469712-77469731 | None:intergenic | 45.0% | |
| GAACAACAGGAAAAGGAGGA+GGG | + | chr3_2:77469713-77469732 | None:intergenic | 45.0% | |
| AGACGAACAACAGGAAAAGG+AGG | + | chr3_2:77469717-77469736 | None:intergenic | 45.0% | |
| CTGAGACGAACAACAGGAAA+AGG | + | chr3_2:77469720-77469739 | None:intergenic | 45.0% | |
| ! | CTTTTCCTGTTGTTCGTCTC+AGG | - | chr3_2:77469718-77469737 | Msa0426820:intron | 45.0% |
| TTTCCTGTTGTTCGTCTCAG+GGG | - | chr3_2:77469720-77469739 | Msa0426820:intron | 45.0% | |
| CAACACTGTTCCAGGAGTAA+TGG | + | chr3_2:77469996-77470015 | None:intergenic | 45.0% | |
| TTTCTCAAGCAGCTTCCTTC+TGG | - | chr3_2:77470055-77470074 | Msa0426820:intron | 45.0% | |
| GTAACGAGAAGAAGTCCAGA+AGG | + | chr3_2:77470073-77470092 | None:intergenic | 45.0% | |
| TCTGGACTTCTTCTCGTTAC+CGG | - | chr3_2:77470073-77470092 | Msa0426820:intron | 45.0% | |
| CTCACTGCGAAGTATGGATT+GGG | + | chr3_2:77469636-77469655 | None:intergenic | 45.0% | |
| CAACATTATGGATATGCCGG+TGG | - | chr3_2:77469675-77469694 | Msa0426820:intron | 45.0% | |
| AACAACAGGAAAAGGAGGAG+GGG | + | chr3_2:77469712-77469731 | None:intergenic | 45.0% | |
| GAACAACAGGAAAAGGAGGA+GGG | + | chr3_2:77469713-77469732 | None:intergenic | 45.0% | |
| AGACGAACAACAGGAAAAGG+AGG | + | chr3_2:77469717-77469736 | None:intergenic | 45.0% | |
| CTGAGACGAACAACAGGAAA+AGG | + | chr3_2:77469720-77469739 | None:intergenic | 45.0% | |
| ! | CTTTTCCTGTTGTTCGTCTC+AGG | - | chr3_2:77469718-77469737 | Msa0426820:intron | 45.0% |
| TTTCCTGTTGTTCGTCTCAG+GGG | - | chr3_2:77469720-77469739 | Msa0426820:intron | 45.0% | |
| CAACACTGTTCCAGGAGTAA+TGG | + | chr3_2:77469996-77470015 | None:intergenic | 45.0% | |
| TTTCTCAAGCAGCTTCCTTC+TGG | - | chr3_2:77470055-77470074 | Msa0426820:intron | 45.0% | |
| GTAACGAGAAGAAGTCCAGA+AGG | + | chr3_2:77470073-77470092 | None:intergenic | 45.0% | |
| TCTGGACTTCTTCTCGTTAC+CGG | - | chr3_2:77470073-77470092 | Msa0426820:intron | 45.0% | |
| ! | AGAAAGTGAGTTGCTGTTGG+AGG | - | chr3_2:77471015-77471034 | Msa0426820:intron | 45.0% |
| ! | GAAAGTGAGTTGCTGTTGGA+GGG | - | chr3_2:77471016-77471035 | Msa0426820:intron | 45.0% |
| ! | AAAGTGAGTTGCTGTTGGAG+GGG | - | chr3_2:77471017-77471036 | Msa0426820:intron | 45.0% |
| GAAGACCGAACAACTCATTG+TGG | - | chr3_2:77471495-77471514 | Msa0426820:intron | 45.0% | |
| CACAACAATGCAACAGCCAT+TGG | - | chr3_2:77471747-77471766 | Msa0426820:intron | 45.0% | |
| ! | GAAGATTGGTCAGAGATGAG+AGG | + | chr3_2:77471922-77471941 | None:intergenic | 45.0% |
| CCTGATTCACACGTCTCAAT+GGG | + | chr3_2:77471991-77472010 | None:intergenic | 45.0% | |
| !! | CGAGTTCTTTGAGGCAGATA+AGG | - | chr3_2:77472123-77472142 | Msa0426820:intron | 45.0% |
| !! | GTTCTTTGAGGCAGATAAGG+AGG | - | chr3_2:77472126-77472145 | Msa0426820:intron | 45.0% |
| GATCATCCTTCTTCTCTTGG+GGG | + | chr3_2:77472263-77472282 | None:intergenic | 45.0% | |
| ! | CAAGTCTGGAACACTGTCAA+TGG | + | chr3_2:77472316-77472335 | None:intergenic | 45.0% |
| CCAAGGTAAGTCTTCAAGTC+TGG | + | chr3_2:77472330-77472349 | None:intergenic | 45.0% | |
| CCAGACTTGAAGACTTACCT+TGG | - | chr3_2:77472327-77472346 | Msa0426820:CDS | 45.0% | |
| GAAGCAGCAGCTTTCAGCAA+TGG | - | chr3_2:77468263-77468282 | Msa0426820:three_prime_UTR | 50.0% | |
| GCCGTAACCCTGAATTGATC+AGG | - | chr3_2:77468313-77468332 | Msa0426820:three_prime_UTR | 50.0% | |
| CCGATACCCCTGATCAATTC+AGG | + | chr3_2:77468324-77468343 | None:intergenic | 50.0% | |
| AGGGAAAAAACCACCGTGCT+TGG | + | chr3_2:77468400-77468419 | None:intergenic | 50.0% | |
| AACTTAGGTGGCTTCTCGAC+CGG | + | chr3_2:77468453-77468472 | None:intergenic | 50.0% | |
| GAGTGGCTTCTTCACATCGT+CGG | + | chr3_2:77468484-77468503 | None:intergenic | 50.0% | |
| !! | GCTTTGGCTTGTGCTTGTTG+CGG | + | chr3_2:77468506-77468525 | None:intergenic | 50.0% |
| !! | AACCTGAGCTTAGTGGGCTT+TGG | + | chr3_2:77468522-77468541 | None:intergenic | 50.0% |
| GTGACGAACCTGAGCTTAGT+GGG | + | chr3_2:77468528-77468547 | None:intergenic | 50.0% | |
| TCCATGTGTTTACGGTCGGT+AGG | - | chr3_2:77469142-77469161 | Msa0426820:intron | 50.0% | |
| ACCTACCGACCGTAAACACA+TGG | + | chr3_2:77469146-77469165 | None:intergenic | 50.0% | |
| !!! | TTTTTTTTGGGTACCGGGGG+GGG | - | chr3_2:77469546-77469565 | Msa0426820:intron | 50.0% |
| GGTTCAGTCACGTACGATGT+TGG | - | chr3_2:77469585-77469604 | Msa0426820:intron | 50.0% | |
| GCTCACTGCGAAGTATGGAT+TGG | + | chr3_2:77469637-77469656 | None:intergenic | 50.0% | |
| CATTATGGATATGCCGGTGG+CGG | - | chr3_2:77469678-77469697 | Msa0426820:intron | 50.0% | |
| ACAACAGGAAAAGGAGGAGG+GGG | + | chr3_2:77469711-77469730 | None:intergenic | 50.0% | |
| CGAACAACAGGAAAAGGAGG+AGG | + | chr3_2:77469714-77469733 | None:intergenic | 50.0% | |
| TTCCTGTTGTTCGTCTCAGG+GGG | - | chr3_2:77469721-77469740 | Msa0426820:intron | 50.0% | |
| TTCAGGGCTTCCATTACTCC+TGG | - | chr3_2:77469983-77470002 | Msa0426820:intron | 50.0% | |
| GCTCACTGCGAAGTATGGAT+TGG | + | chr3_2:77469637-77469656 | None:intergenic | 50.0% | |
| CATTATGGATATGCCGGTGG+CGG | - | chr3_2:77469678-77469697 | Msa0426820:intron | 50.0% | |
| ACAACAGGAAAAGGAGGAGG+GGG | + | chr3_2:77469711-77469730 | None:intergenic | 50.0% | |
| CGAACAACAGGAAAAGGAGG+AGG | + | chr3_2:77469714-77469733 | None:intergenic | 50.0% | |
| TTCCTGTTGTTCGTCTCAGG+GGG | - | chr3_2:77469721-77469740 | Msa0426820:intron | 50.0% | |
| TTCAGGGCTTCCATTACTCC+TGG | - | chr3_2:77469983-77470002 | Msa0426820:intron | 50.0% | |
| !! | CATCGATTCCGCAACAGTCA+AGG | - | chr3_2:77471435-77471454 | Msa0426820:intron | 50.0% |
| GGCTGTTGCATTGTTGTGCA+AGG | + | chr3_2:77471745-77471764 | None:intergenic | 50.0% | |
| CCCATTGAGACGTGTGAATC+AGG | - | chr3_2:77471988-77472007 | Msa0426820:intron | 50.0% | |
| GCCTGATTCACACGTCTCAA+TGG | + | chr3_2:77471992-77472011 | None:intergenic | 50.0% | |
| !! | TGAAGACTTACCTTGGTGCC+AGG | - | chr3_2:77472334-77472353 | Msa0426820:CDS | 50.0% |
| TCAAGGAAAACCTGGCACCA+AGG | + | chr3_2:77472347-77472366 | None:intergenic | 50.0% | |
| !! | TGGTGCCAGGTTTTCCTTGA+AGG | - | chr3_2:77472347-77472366 | Msa0426820:CDS | 50.0% |
| ACCTGCCTTCAAGGAAAACC+TGG | + | chr3_2:77472355-77472374 | None:intergenic | 50.0% | |
| ! | CTCTAGAAGACCAACTCGTG+TGG | + | chr3_2:77472384-77472403 | None:intergenic | 50.0% |
| !! | CACACGAGTTGGTCTTCTAG+AGG | - | chr3_2:77472382-77472401 | Msa0426820:CDS | 50.0% |
| TCTGCCATGTACCACAAGCG+TGG | - | chr3_2:77468357-77468376 | Msa0426820:three_prime_UTR | 55.0% | |
| CTGCCATGTACCACAAGCGT+GGG | - | chr3_2:77468358-77468377 | Msa0426820:three_prime_UTR | 55.0% | |
| TGGGCCATCAAAGCCAAGCA+CGG | - | chr3_2:77468384-77468403 | Msa0426820:three_prime_UTR | 55.0% | |
| !! | ACCACCGTGCTTGGCTTTGA+TGG | + | chr3_2:77468391-77468410 | None:intergenic | 55.0% |
| TCGGCGGGGTAAAACTTAGG+TGG | + | chr3_2:77468465-77468484 | None:intergenic | 55.0% | |
| TCGTCGGCGGGGTAAAACTT+AGG | + | chr3_2:77468468-77468487 | None:intergenic | 55.0% | |
| TGGCTTCTTCACATCGTCGG+CGG | + | chr3_2:77468481-77468500 | None:intergenic | 55.0% | |
| AGCCAAAGCCCACTAAGCTC+AGG | - | chr3_2:77468517-77468536 | Msa0426820:CDS | 55.0% | |
| GGTGACGAACCTGAGCTTAG+TGG | + | chr3_2:77468529-77468548 | None:intergenic | 55.0% | |
| CACATGGACGAAAGCAGGTC+AGG | + | chr3_2:77469130-77469149 | None:intergenic | 55.0% | |
| !!! | TTTTTTTGGGTACCGGGGGG+GGG | - | chr3_2:77469547-77469566 | Msa0426820:intron | 55.0% |
| CCATACTTCGCAGTGAGCAG+CGG | - | chr3_2:77469639-77469658 | Msa0426820:intron | 55.0% | |
| CATACTTCGCAGTGAGCAGC+GGG | - | chr3_2:77469640-77469659 | Msa0426820:intron | 55.0% | |
| CCATACTTCGCAGTGAGCAG+CGG | - | chr3_2:77469639-77469658 | Msa0426820:intron | 55.0% | |
| CATACTTCGCAGTGAGCAGC+GGG | - | chr3_2:77469640-77469659 | Msa0426820:intron | 55.0% | |
| !! | GTTGCTGTTGGAGGGGTGTT+CGG | - | chr3_2:77471024-77471043 | Msa0426820:intron | 55.0% |
| GGGAGAGAGCGAGTTCTTTG+AGG | - | chr3_2:77472114-77472133 | Msa0426820:intron | 55.0% | |
| AGTGCTCCCCCAAGAGAAGA+AGG | - | chr3_2:77472254-77472273 | Msa0426820:intron | 55.0% | |
| ! | GCCAGGTTTTCCTTGAAGGC+AGG | - | chr3_2:77472351-77472370 | Msa0426820:CDS | 55.0% |
| TGGCTTCACACCTGCCTTCA+AGG | + | chr3_2:77472364-77472383 | None:intergenic | 55.0% | |
| AGGTGTGAAGCCACACGAGT+TGG | - | chr3_2:77472371-77472390 | Msa0426820:CDS | 55.0% | |
| GAGCCCACGCTTGTGGTACA+TGG | + | chr3_2:77468364-77468383 | None:intergenic | 60.0% | |
| TGTACCACAAGCGTGGGCTC+TGG | - | chr3_2:77468364-77468383 | Msa0426820:three_prime_UTR | 60.0% | |
| GTACCACAAGCGTGGGCTCT+GGG | - | chr3_2:77468365-77468384 | Msa0426820:three_prime_UTR | 60.0% | |
| GCCATCAAAGCCAAGCACGG+TGG | - | chr3_2:77468387-77468406 | Msa0426820:three_prime_UTR | 60.0% | |
| TAGCGACGGGATCGTGACGA+GGG | + | chr3_2:77468419-77468438 | None:intergenic | 60.0% | |
| TTAGCGACGGGATCGTGACG+AGG | + | chr3_2:77468420-77468439 | None:intergenic | 60.0% | |
| TCGTCACGATCCCGTCGCTA+AGG | - | chr3_2:77468419-77468438 | Msa0426820:three_prime_UTR | 60.0% | |
| GCTTCTTCACATCGTCGGCG+GGG | + | chr3_2:77468479-77468498 | None:intergenic | 60.0% | |
| GGCTTCTTCACATCGTCGGC+GGG | + | chr3_2:77468480-77468499 | None:intergenic | 60.0% | |
| ! | GGCTTGTGCTTGTTGCGGAG+TGG | + | chr3_2:77468501-77468520 | None:intergenic | 60.0% |
| !!! | TTTTTTGGGTACCGGGGGGG+GGG | - | chr3_2:77469548-77469567 | Msa0426820:intron | 60.0% |
| CCGCTGCTCACTGCGAAGTA+TGG | + | chr3_2:77469642-77469661 | None:intergenic | 60.0% | |
| AGCCCCCTGAGACGAACAAC+AGG | + | chr3_2:77469726-77469745 | None:intergenic | 60.0% | |
| CCGCTGCTCACTGCGAAGTA+TGG | + | chr3_2:77469642-77469661 | None:intergenic | 60.0% | |
| AGCCCCCTGAGACGAACAAC+AGG | + | chr3_2:77469726-77469745 | None:intergenic | 60.0% | |
| ! | ATCGTTCTGAGCGGCGACCA+TGG | - | chr3_2:77471627-77471646 | Msa0426820:intron | 60.0% |
| ! | TCGTTCTGAGCGGCGACCAT+GGG | - | chr3_2:77471628-77471647 | Msa0426820:intron | 60.0% |
| GGAGCTGCAGCCTTAGCGAC+GGG | + | chr3_2:77468432-77468451 | None:intergenic | 65.0% | |
| CGGAGCTGCAGCCTTAGCGA+CGG | + | chr3_2:77468433-77468452 | None:intergenic | 65.0% | |
| CGTCGCTAAGGCTGCAGCTC+CGG | - | chr3_2:77468431-77468450 | Msa0426820:three_prime_UTR | 65.0% | |
| !!! | TTTTTGGGTACCGGGGGGGG+GGG | - | chr3_2:77469549-77469568 | Msa0426820:intron | 65.0% |
| TTCGCAGTGAGCAGCGGGAC+AGG | - | chr3_2:77469645-77469664 | Msa0426820:intron | 65.0% | |
| CAGGAAAAGGAGGAGGGGGC+TGG | + | chr3_2:77469707-77469726 | None:intergenic | 65.0% | |
| TTCGCAGTGAGCAGCGGGAC+AGG | - | chr3_2:77469645-77469664 | Msa0426820:intron | 65.0% | |
| CAGGAAAAGGAGGAGGGGGC+TGG | + | chr3_2:77469707-77469726 | None:intergenic | 65.0% | |
| ! | CGTTCTGAGCGGCGACCATG+GGG | - | chr3_2:77471629-77471648 | Msa0426820:intron | 65.0% |
| ! | GTTCTGAGCGGCGACCATGG+GGG | - | chr3_2:77471630-77471649 | Msa0426820:intron | 65.0% |
| TGGCCCAGAGCCCACGCTTG+TGG | + | chr3_2:77468371-77468390 | None:intergenic | 70.0% | |
| !!! | TTTTGGGTACCGGGGGGGGG+GGG | - | chr3_2:77469550-77469569 | Msa0426820:intron | 70.0% |
| ACAGCTTCGGGGCTCCCCCA+TGG | + | chr3_2:77471647-77471666 | None:intergenic | 70.0% | |
| !! | TTTGGGTACCGGGGGGGGGG+GGG | - | chr3_2:77469551-77469570 | Msa0426820:intron | 75.0% |
| AGGGGGCTGGAAGCCGCCAC+CGG | + | chr3_2:77469694-77469713 | None:intergenic | 75.0% | |
| AGGGGGCTGGAAGCCGCCAC+CGG | + | chr3_2:77469694-77469713 | None:intergenic | 75.0% | |
| !!! | TTGGGTACCGGGGGGGGGGG+GGG | - | chr3_2:77469552-77469571 | Msa0426820:intron | 80.0% |
| !!! | TGGGTACCGGGGGGGGGGGG+GGG | - | chr3_2:77469553-77469572 | Msa0426820:intron | 85.0% |
| !!! | GGGTACCGGGGGGGGGGGGG+GGG | - | chr3_2:77469554-77469573 | Msa0426820:intron | 90.0% |
| !! | GGTACCGGGGGGGGGGGGGG+GGG | - | chr3_2:77469555-77469574 | Msa0426820:intron | 90.0% |
| ! | GTACCGGGGGGGGGGGGGGG+GGG | - | chr3_2:77469556-77469575 | Msa0426820:intron | 90.0% |
| ! | TACCGGGGGGGGGGGGGGGG+GGG | - | chr3_2:77469557-77469576 | Msa0426820:intron | 90.0% |
| ! | ACCGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:77469558-77469577 | Msa0426820:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 77468164 | 77472699 | 77468164 | ID=Msa0426820;Name=Msa0426820 |
| chr3_2 | mRNA | 77468164 | 77472699 | 77468164 | ID=Msa0426820-mRNA-1;Parent=Msa0426820;Name=Msa0426820-mRNA-1;_AED=0.07;_eAED=0.16;_QI=118|0.6|0.83|1|1|1|6|298|311 |
| chr3_2 | exon | 77468164 | 77468617 | 77468164 | ID=Msa0426820-mRNA-1:exon:20198;Parent=Msa0426820-mRNA-1 |
| chr3_2 | exon | 77468716 | 77468897 | 77468716 | ID=Msa0426820-mRNA-1:exon:20197;Parent=Msa0426820-mRNA-1 |
| chr3_2 | exon | 77470158 | 77470264 | 77470158 | ID=Msa0426820-mRNA-1:exon:20196;Parent=Msa0426820-mRNA-1 |
| chr3_2 | exon | 77470476 | 77470602 | 77470476 | ID=Msa0426820-mRNA-1:exon:20195;Parent=Msa0426820-mRNA-1 |
| chr3_2 | exon | 77470769 | 77470875 | 77470769 | ID=Msa0426820-mRNA-1:exon:20194;Parent=Msa0426820-mRNA-1 |
| chr3_2 | exon | 77472325 | 77472699 | 77472325 | ID=Msa0426820-mRNA-1:exon:20193;Parent=Msa0426820-mRNA-1 |
| chr3_2 | five_prime_UTR | 77472582 | 77472699 | 77472582 | ID=Msa0426820-mRNA-1:five_prime_utr;Parent=Msa0426820-mRNA-1 |
| chr3_2 | CDS | 77472325 | 77472581 | 77472325 | ID=Msa0426820-mRNA-1:cds;Parent=Msa0426820-mRNA-1 |
| chr3_2 | CDS | 77470769 | 77470875 | 77470769 | ID=Msa0426820-mRNA-1:cds;Parent=Msa0426820-mRNA-1 |
| chr3_2 | CDS | 77470476 | 77470602 | 77470476 | ID=Msa0426820-mRNA-1:cds;Parent=Msa0426820-mRNA-1 |
| chr3_2 | CDS | 77470158 | 77470264 | 77470158 | ID=Msa0426820-mRNA-1:cds;Parent=Msa0426820-mRNA-1 |
| chr3_2 | CDS | 77468716 | 77468897 | 77468716 | ID=Msa0426820-mRNA-1:cds;Parent=Msa0426820-mRNA-1 |
| chr3_2 | CDS | 77468462 | 77468617 | 77468462 | ID=Msa0426820-mRNA-1:cds;Parent=Msa0426820-mRNA-1 |
| chr3_2 | three_prime_UTR | 77468164 | 77468461 | 77468164 | ID=Msa0426820-mRNA-1:three_prime_utr;Parent=Msa0426820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
