Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144630 | XP_013450314.1 | 98.653 | 297 | 4 | 0 | 1 | 297 | 1 | 297 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144630 | sp|O65751|RSSA_CICAR | 89.189 | 296 | 31 | 1 | 2 | 297 | 6 | 300 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144630 | G8A187 | 98.653 | 297 | 4 | 0 | 1 | 297 | 1 | 297 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003030 | Msa1144630 | 0.815568 | 8.650293e-52 | -8.615850e-47 |
| Msa0020870 | Msa1144630 | 0.831282 | 1.823598e-55 | -8.615850e-47 |
| Msa0026270 | Msa1144630 | 0.813221 | 2.856104e-51 | -8.615850e-47 |
| Msa0042510 | Msa1144630 | 0.882762 | 7.934571e-71 | -8.615850e-47 |
| Msa0079560 | Msa1144630 | 0.877350 | 6.741677e-69 | -8.615850e-47 |
| Msa0094210 | Msa1144630 | 0.875855 | 2.216363e-68 | -8.615850e-47 |
| Msa0116600 | Msa1144630 | 0.850034 | 2.204066e-60 | -8.615850e-47 |
| Msa0116690 | Msa1144630 | 0.831693 | 1.444154e-55 | -8.615850e-47 |
| Msa0610380 | Msa1144630 | 0.820191 | 7.813811e-53 | -8.615850e-47 |
| Msa0619230 | Msa1144630 | 0.849866 | 2.455198e-60 | -8.615850e-47 |
| Msa0621190 | Msa1144630 | 0.892410 | 1.629388e-74 | -8.615850e-47 |
| Msa0650910 | Msa1144630 | 0.810453 | 1.144095e-50 | -8.615850e-47 |
| Msa0656450 | Msa1144630 | 0.911616 | 4.968398e-83 | -8.615850e-47 |
| Msa0691760 | Msa1144630 | 0.831118 | 2.000633e-55 | -8.615850e-47 |
| Msa0700370 | Msa1144630 | 0.913061 | 9.516909e-84 | -8.615850e-47 |
| Msa0127230 | Msa1144630 | 0.876253 | 1.616946e-68 | -8.615850e-47 |
| Msa0146910 | Msa1144630 | 0.817152 | 3.824216e-52 | -8.615850e-47 |
| Msa0168320 | Msa1144630 | 0.813647 | 2.302527e-51 | -8.615850e-47 |
| Msa0182050 | Msa1144630 | 0.804035 | 2.620789e-49 | -8.615850e-47 |
| Msa0182100 | Msa1144630 | 0.817354 | 3.445164e-52 | -8.615850e-47 |
| Msa0188740 | Msa1144630 | 0.807753 | 4.333820e-50 | -8.615850e-47 |
| Msa0192300 | Msa1144630 | 0.818520 | 1.878206e-52 | -8.615850e-47 |
| Msa0233550 | Msa1144630 | 0.846704 | 1.837576e-59 | -8.615850e-47 |
| Msa0371490 | Msa1144630 | 0.811547 | 6.627875e-51 | -8.615850e-47 |
| Msa0373350 | Msa1144630 | 0.832682 | 8.221658e-56 | -8.615850e-47 |
| Msa0377610 | Msa1144630 | 0.845190 | 4.739530e-59 | -8.615850e-47 |
| Msa0382670 | Msa1144630 | 0.806767 | 7.011781e-50 | -8.615850e-47 |
| Msa0387290 | Msa1144630 | 0.874271 | 7.694582e-68 | -8.615850e-47 |
| Msa0388520 | Msa1144630 | 0.841223 | 5.413594e-58 | -8.615850e-47 |
| Msa0388540 | Msa1144630 | 0.886512 | 3.207931e-72 | -8.615850e-47 |
| Msa0421920 | Msa1144630 | 0.834295 | 3.256345e-56 | -8.615850e-47 |
| Msa0426820 | Msa1144630 | 0.857225 | 1.886273e-62 | -8.615850e-47 |
| Msa0426940 | Msa1144630 | 0.834613 | 2.708414e-56 | -8.615850e-47 |
| Msa0427380 | Msa1144630 | 0.805022 | 1.631202e-49 | -8.615850e-47 |
| Msa0467740 | Msa1144630 | 0.867333 | 1.479041e-65 | -8.615850e-47 |
| Msa0477670 | Msa1144630 | 0.893801 | 4.478936e-75 | -8.615850e-47 |
| Msa0987570 | Msa1144630 | 0.844616 | 6.771549e-59 | -8.615850e-47 |
| Msa0998890 | Msa1144630 | 0.826774 | 2.255242e-54 | -8.615850e-47 |
| Msa1026850 | Msa1144630 | 0.813734 | 2.203301e-51 | -8.615850e-47 |
| Msa1052810 | Msa1144630 | 0.825140 | 5.514981e-54 | -8.615850e-47 |
| Msa0256350 | Msa1144630 | 0.808133 | 3.597107e-50 | -8.615850e-47 |
| Msa0270160 | Msa1144630 | 0.806823 | 6.821061e-50 | -8.615850e-47 |
| Msa0301250 | Msa1144630 | 0.830162 | 3.429550e-55 | -8.615850e-47 |
| Msa0304270 | Msa1144630 | 0.806482 | 8.052240e-50 | -8.615850e-47 |
| Msa1111820 | Msa1144630 | 0.823119 | 1.643998e-53 | -8.615850e-47 |
| Msa1124980 | Msa1144630 | 0.802346 | 5.860701e-49 | -8.615850e-47 |
| Msa1144630 | Msa1165700 | 0.929798 | 4.141201e-93 | -8.615850e-47 |
| Msa1144630 | Msa1235980 | 0.803817 | 2.908800e-49 | -8.615850e-47 |
| Msa1144630 | Msa1245270 | 0.841580 | 4.358307e-58 | -8.615850e-47 |
| Msa1144630 | Msa1284800 | 0.881559 | 2.169796e-70 | -8.615850e-47 |
| Msa1144630 | Msa1317390 | 0.845025 | 5.251879e-59 | -8.615850e-47 |
| Msa1144630 | Msa1351020 | 0.805219 | 1.483858e-49 | -8.615850e-47 |
| Msa1144630 | Msa1363910 | 0.846499 | 2.090772e-59 | -8.615850e-47 |
| Msa1144630 | Msa1363930 | 0.999550 | 7.707424e-322 | -8.615850e-47 |
| Msa1144630 | Msa1366540 | 0.852543 | 4.309538e-61 | -8.615850e-47 |
| Msa1144630 | Msa1387750 | 0.903537 | 3.131534e-79 | -8.615850e-47 |
| Msa1144630 | Msa1390760 | 0.849680 | 2.768002e-60 | -8.615850e-47 |
| Msa1144630 | Msa1403520 | 0.821350 | 4.231278e-53 | -8.615850e-47 |
| Msa1144630 | Msa1407550 | 0.831145 | 1.970926e-55 | -8.615850e-47 |
| Msa1144630 | Msa1413570 | 0.908795 | 1.156168e-81 | -8.615850e-47 |
| Msa1144630 | Msa1432310 | 0.819220 | 1.302079e-52 | -8.615850e-47 |
| Msa1144630 | Msa1463510 | 0.898660 | 4.266259e-77 | -8.615850e-47 |
| Msa1144630 | Msa1465890 | 0.877708 | 5.059403e-69 | -8.615850e-47 |
| Msa0511760 | Msa1144630 | 0.839240 | 1.783162e-57 | -8.615850e-47 |
| Msa0514130 | Msa1144630 | 0.857233 | 1.876604e-62 | -8.615850e-47 |
| Msa0578010 | Msa1144630 | 0.892706 | 1.239927e-74 | -8.615850e-47 |
| Msa0589160 | Msa1144630 | 0.801035 | 1.088785e-48 | -8.615850e-47 |
| Msa0858190 | Msa1144630 | 0.810168 | 1.317858e-50 | -8.615850e-47 |
| Msa0930360 | Msa1144630 | 0.920790 | 8.183636e-88 | -8.615850e-47 |
| Msa0930790 | Msa1144630 | 0.872920 | 2.195244e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144630 | MtrunA17_Chr7g0268451 | 98.653 | 297 | 4 | 0 | 1 | 297 | 1 | 297 | 0.0 | 605 |
| Msa1144630 | MtrunA17_Chr3g0129861 | 92.203 | 295 | 21 | 2 | 3 | 297 | 7 | 299 | 0.0 | 516 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1144630 | AT3G04770.2 | 75.627 | 279 | 49 | 6 | 3 | 271 | 9 | 278 | 3.75e-148 | 417 |
| Msa1144630 | AT1G72370.2 | 79.283 | 251 | 39 | 3 | 2 | 240 | 7 | 256 | 1.35e-145 | 411 |
| Msa1144630 | AT1G72370.1 | 79.283 | 251 | 39 | 3 | 2 | 240 | 7 | 256 | 1.93e-145 | 410 |
| Msa1144630 | AT3G04770.1 | 88.384 | 198 | 23 | 0 | 2 | 199 | 8 | 205 | 2.52e-131 | 376 |
Find 128 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAGAGTGAGGTTGAGATTA+GGG | 0.200518 | 7_4:+20924386 | None:intergenic |
| GTTTACGACTTGGAATATTT+TGG | 0.206489 | 7_4:-20921963 | Msa1144630:three_prime_UTR |
| TGATTTCCCCTCCTGGTTCT+TGG | 0.225054 | 7_4:-20921879 | Msa1144630:three_prime_UTR |
| ACTAATCCAGATGTTACTTT+TGG | 0.236780 | 7_4:+20922039 | None:intergenic |
| AGGGATTTATATTATAAATC+TGG | 0.244718 | 7_4:-20924127 | Msa1144630:CDS |
| CTCAAATTTGCTCAGTATAC+TGG | 0.267475 | 7_4:-20923997 | Msa1144630:CDS |
| ATCGATCAAGTACCAGCTTC+TGG | 0.282672 | 7_4:+20922500 | None:intergenic |
| CCAAGAGCAGCTTCCTTGAT+TGG | 0.286416 | 7_4:+20923037 | None:intergenic |
| GTTCAATCTGCTAGACCTTA+TGG | 0.290724 | 7_4:-20924033 | Msa1144630:CDS |
| TGCTTGCCCTTGTTGTTGGC+AGG | 0.316997 | 7_4:+20922950 | None:intergenic |
| CAGCAGTTCCTGCTGTCAAC+TGG | 0.338422 | 7_4:-20922529 | Msa1144630:CDS |
| TGAGTATGAAGAAATGAAAC+TGG | 0.352792 | 7_4:+20924457 | None:intergenic |
| TCTTGCTCCTTTGCCTCCTC+AGG | 0.364214 | 7_4:+20922677 | None:intergenic |
| ACTGTGCTTGCCCTTGTTGT+TGG | 0.371019 | 7_4:+20922946 | None:intergenic |
| ACAGTATAGGATGTCTGTTT+TGG | 0.375538 | 7_4:-20922928 | Msa1144630:CDS |
| GAACTGCATCATTCCATGTT+TGG | 0.376849 | 7_4:+20922564 | None:intergenic |
| AGCAGAGTGAGGTTGAGATT+AGG | 0.378530 | 7_4:+20924385 | None:intergenic |
| CAGGAGCAGGTATTTGTTGT+GGG | 0.383724 | 7_4:+20922152 | None:intergenic |
| GAAACCTGATGATCAGTTCT+TGG | 0.383788 | 7_4:+20923880 | None:intergenic |
| GTTGAGATTAGGGTTATGTA+TGG | 0.392297 | 7_4:+20924396 | None:intergenic |
| ATGGAGCAACTTCAACAGTT+AGG | 0.396196 | 7_4:+20924415 | None:intergenic |
| CCTTTCCCAAAAGTAACATC+TGG | 0.398118 | 7_4:-20922045 | Msa1144630:three_prime_UTR |
| GGGATTTATATTATAAATCT+GGG | 0.401340 | 7_4:-20924126 | Msa1144630:CDS |
| TTCCCAGCCAGTTGCTTGGA+TGG | 0.405766 | 7_4:+20922120 | None:intergenic |
| CATCGGCGGCAAGCATCATC+TGG | 0.408335 | 7_4:+20924309 | None:intergenic |
| AGCAGGCCATTGTCCATCAT+TGG | 0.409891 | 7_4:+20922595 | None:intergenic |
| ATCAGTGAGGATAAGAAGCC+TGG | 0.410991 | 7_4:+20923903 | None:intergenic |
| GCAGGCCATTGTCCATCATT+GGG | 0.413746 | 7_4:+20922596 | None:intergenic |
| ACTGGTGCCAATGCTATTGC+TGG | 0.415426 | 7_4:-20923979 | Msa1144630:CDS |
| CCAATCAAGGAAGCTGCTCT+TGG | 0.415479 | 7_4:-20923037 | Msa1144630:CDS |
| TTACCATGACATCCCACTTA+AGG | 0.419417 | 7_4:+20922858 | None:intergenic |
| GCAGGTATTTGTTGTGGGGC+TGG | 0.425106 | 7_4:+20922157 | None:intergenic |
| ACGAGGGGCGGCCATGGTGG+CGG | 0.425429 | 7_4:+20924358 | None:intergenic |
| TCGATCAAGTACCAGCTTCT+GGG | 0.429103 | 7_4:+20922501 | None:intergenic |
| ACAGCAGGAACTGCTGGAAT+AGG | 0.430588 | 7_4:+20922536 | None:intergenic |
| CTTATTCCCAGCCAGTTGCT+TGG | 0.433981 | 7_4:+20922116 | None:intergenic |
| CAGGTTCTCTATAAAAGAAC+AGG | 0.436315 | 7_4:+20922696 | None:intergenic |
| CAGAAGTATTGTTTACGACT+TGG | 0.447835 | 7_4:-20921973 | Msa1144630:three_prime_UTR |
| GAATGAAACTTGCATCTGAT+TGG | 0.451068 | 7_4:+20923933 | None:intergenic |
| AGTCCATCCAAGCAACTGGC+TGG | 0.454371 | 7_4:-20922123 | Msa1144630:CDS |
| GAAATGAAACTGGGTGGGTA+GGG | 0.457290 | 7_4:+20924467 | None:intergenic |
| CAGTTGACAGCAGGAACTGC+TGG | 0.458194 | 7_4:+20922530 | None:intergenic |
| CTATACATTATTTGAGATGT+GGG | 0.467804 | 7_4:-20921818 | Msa1144630:three_prime_UTR |
| TGATCCAAGAACTGATCATC+AGG | 0.468742 | 7_4:-20923884 | Msa1144630:intron |
| AAGTCAGTAATAGCATAATC+TGG | 0.469421 | 7_4:+20922635 | None:intergenic |
| GTTGAGGTGATTTCCCCTCC+TGG | 0.469545 | 7_4:-20921886 | Msa1144630:three_prime_UTR |
| CCATTCGCCCTGGCCTTAAG+TGG | 0.476474 | 7_4:-20922871 | Msa1144630:CDS |
| GCTATTACTGACTTTAATGC+AGG | 0.477186 | 7_4:-20922626 | Msa1144630:CDS |
| GTTGAGTCCATCCAAGCAAC+TGG | 0.477635 | 7_4:-20922127 | Msa1144630:CDS |
| GTATCACAGAAAGCAATTGT+TGG | 0.479071 | 7_4:+20923007 | None:intergenic |
| GGAAGGTAAATATAAATTGA+AGG | 0.482706 | 7_4:+20922067 | None:intergenic |
| GAGTTGACGAGGGGCGGCCA+TGG | 0.483920 | 7_4:+20924352 | None:intergenic |
| AACTGGGCAGCCCCAGAAGC+TGG | 0.486191 | 7_4:-20922512 | Msa1144630:intron |
| ATTGAACAATCATATCTTGT+GGG | 0.493138 | 7_4:+20924049 | None:intergenic |
| GCTTGGATGGACTCAACTCC+AGG | 0.495466 | 7_4:+20922133 | None:intergenic |
| GGAACTGCTGGAATAGGCTC+TGG | 0.497641 | 7_4:+20922542 | None:intergenic |
| TGGAGCAACTTCAACAGTTA+GGG | 0.498418 | 7_4:+20924416 | None:intergenic |
| GGGGCTGCCCAGTTGACAGC+AGG | 0.498864 | 7_4:+20922521 | None:intergenic |
| CCAGGAGCAGGTATTTGTTG+TGG | 0.503860 | 7_4:+20922151 | None:intergenic |
| TCTATACATTATTTGAGATG+TGG | 0.504242 | 7_4:-20921819 | Msa1144630:three_prime_UTR |
| AGCAGTTCCTGCTGTCAACT+GGG | 0.509125 | 7_4:-20922528 | Msa1144630:CDS |
| TTGTCTTGCAGCTGCAGGGG+GGG | 0.509610 | 7_4:-20922197 | Msa1144630:intron |
| CATGTTTGGTCGATAGCAGC+AGG | 0.511174 | 7_4:+20922578 | None:intergenic |
| CCACAACAAATACCTGCTCC+TGG | 0.512625 | 7_4:-20922151 | Msa1144630:CDS |
| TGTTTGTGTGCAGCCAATCA+AGG | 0.514122 | 7_4:-20923050 | Msa1144630:intron |
| ATGACATCCCACTTAAGGCC+AGG | 0.514173 | 7_4:+20922863 | None:intergenic |
| AGAACAGCTCTCTGTCCATA+AGG | 0.514765 | 7_4:+20924018 | None:intergenic |
| GCTTGCCCTTGTTGTTGGCA+GGG | 0.514834 | 7_4:+20922951 | None:intergenic |
| TAAACTAAGCAAATCATAGA+TGG | 0.515447 | 7_4:+20921782 | None:intergenic |
| AGAAATGAAACTGGGTGGGT+AGG | 0.516622 | 7_4:+20924466 | None:intergenic |
| AGATTTGTCTTGCAGCTGCA+GGG | 0.519344 | 7_4:-20922201 | Msa1144630:intron |
| TGTTTATTCATCAGTACATG+TGG | 0.521712 | 7_4:-20921726 | Msa1144630:three_prime_UTR |
| GCAGGTTCTATCCCCAATGA+TGG | 0.524423 | 7_4:-20922608 | Msa1144630:CDS |
| CCACTTAAGGCCAGGGCGAA+TGG | 0.524759 | 7_4:+20922871 | None:intergenic |
| GATTTGTCTTGCAGCTGCAG+GGG | 0.527935 | 7_4:-20922200 | Msa1144630:intron |
| ATCTTCAAGCGCCGTAACGA+TGG | 0.529765 | 7_4:-20924242 | Msa1144630:intron |
| TAGAGAACCTGAGGAGGCAA+AGG | 0.541067 | 7_4:-20922684 | Msa1144630:CDS |
| ATGGAATGTTACCATCGTTA+CGG | 0.545997 | 7_4:+20924231 | None:intergenic |
| GTAATAGCATAATCTGGTGC+AGG | 0.546158 | 7_4:+20922641 | None:intergenic |
| AACAAGGGCAAGCACAGTAT+AGG | 0.547955 | 7_4:-20922941 | Msa1144630:CDS |
| TTGACGAGGGGCGGCCATGG+TGG | 0.548180 | 7_4:+20924355 | None:intergenic |
| TGGCCTTAAGTGGGATGTCA+TGG | 0.555571 | 7_4:-20922861 | Msa1144630:intron |
| CTGCTGCTATCGACCAAACA+TGG | 0.557904 | 7_4:-20922577 | Msa1144630:CDS |
| GATTGAACAATCATATCTTG+TGG | 0.558514 | 7_4:+20924048 | None:intergenic |
| TTTAGTACCGAGATGGACAT+CGG | 0.561895 | 7_4:+20924292 | None:intergenic |
| GAAGGTAAATATAAATTGAA+GGG | 0.564937 | 7_4:+20922068 | None:intergenic |
| CGATCAAGTACCAGCTTCTG+GGG | 0.566204 | 7_4:+20922502 | None:intergenic |
| CTGAGAGAGTTGACGAGGGG+CGG | 0.567420 | 7_4:+20924346 | None:intergenic |
| TATAATTTCAGAATGTGTTG+AGG | 0.567493 | 7_4:-20921902 | Msa1144630:three_prime_UTR |
| ATGGACTCAACTCCAGGAGC+AGG | 0.568466 | 7_4:+20922139 | None:intergenic |
| ATCTGATTGGTAAAAGTACC+AGG | 0.569249 | 7_4:+20923946 | None:intergenic |
| ATTGCTGGAAGGCACACGCC+TGG | 0.569818 | 7_4:-20923964 | Msa1144630:CDS |
| CCTATGCGATATGTCGACAT+TGG | 0.570541 | 7_4:-20922977 | Msa1144630:CDS |
| ACGTAGACCAAGAACCAGGA+GGG | 0.570655 | 7_4:+20921872 | None:intergenic |
| CTCTGCTACTTCCGCCACCA+TGG | 0.571384 | 7_4:-20924369 | Msa1144630:exon |
| ATGCGTGGAACCATTCGCCC+TGG | 0.577456 | 7_4:-20922881 | Msa1144630:CDS |
| AAGTTTCATTCAGTGAGCCC+AGG | 0.582162 | 7_4:-20923921 | Msa1144630:CDS |
| AGGAGCAGGTATTTGTTGTG+GGG | 0.582996 | 7_4:+20922153 | None:intergenic |
| GTTTATTCATCAGTACATGT+GGG | 0.583446 | 7_4:-20921725 | Msa1144630:three_prime_UTR |
| ATTTGTCTTGCAGCTGCAGG+GGG | 0.583953 | 7_4:-20922199 | Msa1144630:intron |
| GTGCCTTCCAGCAATAGCAT+TGG | 0.585941 | 7_4:+20923972 | None:intergenic |
| TGAGGAGGCAAAGGAGCAAG+AGG | 0.586597 | 7_4:-20922675 | Msa1144630:CDS |
| GTCCATCCAAGCAACTGGCT+GGG | 0.586705 | 7_4:-20922122 | Msa1144630:CDS |
| TGGAATCCCTGCCAACAACA+AGG | 0.586772 | 7_4:-20922957 | Msa1144630:CDS |
| CTTGCCGCCGATGTCCATCT+CGG | 0.588724 | 7_4:-20924299 | Msa1144630:CDS |
| CTTTCTGAGAGAGTTGACGA+GGG | 0.590646 | 7_4:+20924342 | None:intergenic |
| ACAAACGTAGACCAAGAACC+AGG | 0.593302 | 7_4:+20921868 | None:intergenic |
| ATGAAGAAATGAAACTGGGT+GGG | 0.611379 | 7_4:+20924462 | None:intergenic |
| TCAGTGAGGATAAGAAGCCT+GGG | 0.611983 | 7_4:+20923904 | None:intergenic |
| TGACATCCCACTTAAGGCCA+GGG | 0.615254 | 7_4:+20922864 | None:intergenic |
| CATTCGCCCTGGCCTTAAGT+GGG | 0.617158 | 7_4:-20922870 | Msa1144630:CDS |
| TTTGTCTTGCAGCTGCAGGG+GGG | 0.617734 | 7_4:-20922198 | Msa1144630:intron |
| GGAATCCCTGCCAACAACAA+GGG | 0.619315 | 7_4:-20922956 | Msa1144630:CDS |
| CGTAGACCAAGAACCAGGAG+GGG | 0.621679 | 7_4:+20921873 | None:intergenic |
| AGGATGGTGTTGCAGATGCG+TGG | 0.623853 | 7_4:-20922896 | Msa1144630:CDS |
| TCTTTCTGAGAGAGTTGACG+AGG | 0.626351 | 7_4:+20924341 | None:intergenic |
| GTGCCAATGCTATTGCTGGA+AGG | 0.638251 | 7_4:-20923975 | Msa1144630:CDS |
| TTTCTGAGAGAGTTGACGAG+GGG | 0.657247 | 7_4:+20924343 | None:intergenic |
| CTATCCCCAATGATGGACAA+TGG | 0.660054 | 7_4:-20922601 | Msa1144630:CDS |
| CAGGCCATTGTCCATCATTG+GGG | 0.668561 | 7_4:+20922597 | None:intergenic |
| CCAATGTCGACATATCGCAT+AGG | 0.669426 | 7_4:+20922977 | None:intergenic |
| ACTGGCTGGGAATAAGCTAG+TGG | 0.675865 | 7_4:-20922109 | Msa1144630:exon |
| GAGTATGAAGAAATGAAACT+GGG | 0.682333 | 7_4:+20924458 | None:intergenic |
| GTGGCGGAAGTAGCAGAGTG+AGG | 0.695124 | 7_4:+20924374 | None:intergenic |
| AACGTAGACCAAGAACCAGG+AGG | 0.701621 | 7_4:+20921871 | None:intergenic |
| TATGAAGAAATGAAACTGGG+TGG | 0.709043 | 7_4:+20924461 | None:intergenic |
| GATCAGTTCTTGGATCAGTG+AGG | 0.719669 | 7_4:+20923890 | None:intergenic |
| AGTACCGAGATGGACATCGG+CGG | 0.738432 | 7_4:+20924295 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTATTTTATATTCTATTA+TGG | + | chr7_4:20922609-20922628 | None:intergenic | 10.0% |
| !! | ATATTGTATTATAAGAAATT+TGG | - | chr7_4:20923113-20923132 | Msa1144630:intron | 10.0% |
| !! | TGCATTTGTTTATTTATTTA+GGG | - | chr7_4:20922059-20922078 | Msa1144630:three_prime_UTR | 15.0% |
| !!! | AAGTTTTTTTATTTTAGCTT+TGG | - | chr7_4:20922486-20922505 | Msa1144630:intron | 15.0% |
| !! | TAATATGTTTATCCAAAATT+GGG | + | chr7_4:20922512-20922531 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTTATGTTATTGT+GGG | - | chr7_4:20922657-20922676 | Msa1144630:CDS | 15.0% |
| !! | ATATTATTAAAACAGCTTAT+AGG | + | chr7_4:20922943-20922962 | None:intergenic | 15.0% |
| !!! | TGTTTTAATAATATATTGTG+TGG | - | chr7_4:20922949-20922968 | Msa1144630:CDS | 15.0% |
| !!! | AACTATTTTTTCTTTTGTAA+CGG | - | chr7_4:20923369-20923388 | Msa1144630:intron | 15.0% |
| !!! | GATTAATTTTTGACTACATT+TGG | + | chr7_4:20922028-20922047 | None:intergenic | 20.0% |
| !! | GTGCATTTGTTTATTTATTT+AGG | - | chr7_4:20922058-20922077 | Msa1144630:three_prime_UTR | 20.0% |
| !! | AGGGATTTATATTATAAATC+TGG | - | chr7_4:20922078-20922097 | Msa1144630:three_prime_UTR | 20.0% |
| !! | GGGATTTATATTATAAATCT+GGG | - | chr7_4:20922079-20922098 | Msa1144630:three_prime_UTR | 20.0% |
| !! | CTAATATGTTTATCCAAAAT+TGG | + | chr7_4:20922513-20922532 | None:intergenic | 20.0% |
| !! | CATGTATATATATGAATATG+CGG | + | chr7_4:20922560-20922579 | None:intergenic | 20.0% |
| !!! | GTTGTTTTTTTATGTTATTG+TGG | - | chr7_4:20922656-20922675 | Msa1144630:CDS | 20.0% |
| !!! | TGTTTTTTTATGTTATTGTG+GGG | - | chr7_4:20922658-20922677 | Msa1144630:CDS | 20.0% |
| !! | TTAAGATGTTTATCCAAAAA+GGG | + | chr7_4:20922836-20922855 | None:intergenic | 20.0% |
| !! | ATTAAGATGTTTATCCAAAA+AGG | + | chr7_4:20922837-20922856 | None:intergenic | 20.0% |
| !! | GTAATAATAAGTGCTTATAT+AGG | + | chr7_4:20922891-20922910 | None:intergenic | 20.0% |
| !! | AAGTTAACGAAATAAATGTT+GGG | + | chr7_4:20923887-20923906 | None:intergenic | 20.0% |
| !! | GAAGGTAAATATAAATTGAA+GGG | + | chr7_4:20924140-20924159 | None:intergenic | 20.0% |
| !! | ATAATTTAGGGTTTGGAAAA+TGG | + | chr7_4:20921996-20922015 | None:intergenic | 25.0% |
| !! | AAATTGGATAATTTAGGGTT+TGG | + | chr7_4:20922003-20922022 | None:intergenic | 25.0% |
| ! | TGGTGAAATTGGATAATTTA+GGG | + | chr7_4:20922008-20922027 | None:intergenic | 25.0% |
| ! | TTGGTGAAATTGGATAATTT+AGG | + | chr7_4:20922009-20922028 | None:intergenic | 25.0% |
| ! | TTATAAATCTGGGAAAAACA+TGG | - | chr7_4:20922089-20922108 | Msa1144630:three_prime_UTR | 25.0% |
| ! | TATAAATCTGGGAAAAACAT+GGG | - | chr7_4:20922090-20922109 | Msa1144630:three_prime_UTR | 25.0% |
| ! | ATTGAACAATCATATCTTGT+GGG | + | chr7_4:20922159-20922178 | None:intergenic | 25.0% |
| !!! | TGATTCATTGTTTTATGTGT+AGG | - | chr7_4:20922379-20922398 | Msa1144630:intron | 25.0% |
| !!! | GATTCATTGTTTTATGTGTA+GGG | - | chr7_4:20922380-20922399 | Msa1144630:intron | 25.0% |
| ! | AGTTAACGAAATAAATGTTG+GGG | + | chr7_4:20923886-20923905 | None:intergenic | 25.0% |
| ! | CAAGTTAACGAAATAAATGT+TGG | + | chr7_4:20923888-20923907 | None:intergenic | 25.0% |
| !! | TTCTCTATTTAAGATTTGTC+AGG | - | chr7_4:20923912-20923931 | Msa1144630:CDS | 25.0% |
| !! | TCTCTATTTAAGATTTGTCA+GGG | - | chr7_4:20923913-20923932 | Msa1144630:CDS | 25.0% |
| ! | GGAAGGTAAATATAAATTGA+AGG | + | chr7_4:20924141-20924160 | None:intergenic | 25.0% |
| ! | TATAATTTCAGAATGTGTTG+AGG | - | chr7_4:20924303-20924322 | Msa1144630:CDS | 25.0% |
| !! | TCTATACATTATTTGAGATG+TGG | - | chr7_4:20924386-20924405 | Msa1144630:five_prime_UTR | 25.0% |
| !! | CTATACATTATTTGAGATGT+GGG | - | chr7_4:20924387-20924406 | Msa1144630:five_prime_UTR | 25.0% |
| ! | TAAACTAAGCAAATCATAGA+TGG | + | chr7_4:20924426-20924445 | None:intergenic | 25.0% |
| GAGTATGAAGAAATGAAACT+GGG | + | chr7_4:20921750-20921769 | None:intergenic | 30.0% | |
| TGAGTATGAAGAAATGAAAC+TGG | + | chr7_4:20921751-20921770 | None:intergenic | 30.0% | |
| ! | TTGACTACATTTGGTGAAAT+TGG | + | chr7_4:20922019-20922038 | None:intergenic | 30.0% |
| GATTGAACAATCATATCTTG+TGG | + | chr7_4:20922160-20922179 | None:intergenic | 30.0% | |
| AACTTTGCACAAAAACCAAT+GGG | + | chr7_4:20922796-20922815 | None:intergenic | 30.0% | |
| AAACTTTGCACAAAAACCAA+TGG | + | chr7_4:20922797-20922816 | None:intergenic | 30.0% | |
| !!! | ATTTTAGCTTGAACCCTTTT+TGG | - | chr7_4:20922820-20922839 | Msa1144630:intron | 30.0% |
| AAGTGCTTATATAGGATATG+AGG | + | chr7_4:20922883-20922902 | None:intergenic | 30.0% | |
| AATATATTGTGTGGAGCTTA+TGG | - | chr7_4:20922958-20922977 | Msa1144630:CDS | 30.0% | |
| TTTGATCAAGTCTATTGTCT+TGG | - | chr7_4:20923465-20923484 | Msa1144630:intron | 30.0% | |
| TTGATCAAGTCTATTGTCTT+GGG | - | chr7_4:20923466-20923485 | Msa1144630:intron | 30.0% | |
| AAGTCAGTAATAGCATAATC+TGG | + | chr7_4:20923573-20923592 | None:intergenic | 30.0% | |
| CAAGGTAAATCAATGTTGAA+GGG | + | chr7_4:20923777-20923796 | None:intergenic | 30.0% | |
| TCAAGGTAAATCAATGTTGA+AGG | + | chr7_4:20923778-20923797 | None:intergenic | 30.0% | |
| ! | CTCTATTTAAGATTTGTCAG+GGG | - | chr7_4:20923914-20923933 | Msa1144630:CDS | 30.0% |
| !!! | CTAATCCAGATGTTACTTTT+GGG | + | chr7_4:20924168-20924187 | None:intergenic | 30.0% |
| !!! | ACTAATCCAGATGTTACTTT+TGG | + | chr7_4:20924169-20924188 | None:intergenic | 30.0% |
| !!! | AACATCTGGATTAGTCTTTT+TGG | - | chr7_4:20924174-20924193 | Msa1144630:intron | 30.0% |
| !! | GTTTACGACTTGGAATATTT+TGG | - | chr7_4:20924242-20924261 | Msa1144630:intron | 30.0% |
| TGTTTATTCATCAGTACATG+TGG | - | chr7_4:20924479-20924498 | Msa1144630:five_prime_UTR | 30.0% | |
| GTTTATTCATCAGTACATGT+GGG | - | chr7_4:20924480-20924499 | Msa1144630:five_prime_UTR | 30.0% | |
| ATGAAGAAATGAAACTGGGT+GGG | + | chr7_4:20921746-20921765 | None:intergenic | 35.0% | |
| TATGAAGAAATGAAACTGGG+TGG | + | chr7_4:20921747-20921766 | None:intergenic | 35.0% | |
| GTTGAGATTAGGGTTATGTA+TGG | + | chr7_4:20921812-20921831 | None:intergenic | 35.0% | |
| TAAAAACTGCGACTTTCAGA+TGG | - | chr7_4:20921932-20921951 | Msa1144630:three_prime_UTR | 35.0% | |
| ATGGAATGTTACCATCGTTA+CGG | + | chr7_4:20921977-20921996 | None:intergenic | 35.0% | |
| ! | CTCAAATTTGCTCAGTATAC+TGG | - | chr7_4:20922208-20922227 | Msa1144630:intron | 35.0% |
| !! | ATCTGATTGGTAAAAGTACC+AGG | + | chr7_4:20922262-20922281 | None:intergenic | 35.0% |
| GAATGAAACTTGCATCTGAT+TGG | + | chr7_4:20922275-20922294 | None:intergenic | 35.0% | |
| !!! | TTTTAGCTTTGGCCCAATTT+TGG | - | chr7_4:20922497-20922516 | Msa1144630:intron | 35.0% |
| AAGCACTTGTAAGTCTGTTT+GGG | + | chr7_4:20922734-20922753 | None:intergenic | 35.0% | |
| TAAGCACTTGTAAGTCTGTT+TGG | + | chr7_4:20922735-20922754 | None:intergenic | 35.0% | |
| ACTTTGCACAAAAACCAATG+GGG | + | chr7_4:20922795-20922814 | None:intergenic | 35.0% | |
| AAGCACTTGTAAACCAACTT+GGG | + | chr7_4:20923025-20923044 | None:intergenic | 35.0% | |
| TAAGCACTTGTAAACCAACT+TGG | + | chr7_4:20923026-20923045 | None:intergenic | 35.0% | |
| GACAATCTGGTTATTAGGTT+TGG | + | chr7_4:20923073-20923092 | None:intergenic | 35.0% | |
| AAGCAGACAATCTGGTTATT+AGG | + | chr7_4:20923078-20923097 | None:intergenic | 35.0% | |
| GTATCACAGAAAGCAATTGT+TGG | + | chr7_4:20923201-20923220 | None:intergenic | 35.0% | |
| ! | ACAGTATAGGATGTCTGTTT+TGG | - | chr7_4:20923277-20923296 | Msa1144630:intron | 35.0% |
| ! | CAATGTGAAGTATCCATATG+TGG | - | chr7_4:20923411-20923430 | Msa1144630:intron | 35.0% |
| CAGGTTCTCTATAAAAGAAC+AGG | + | chr7_4:20923512-20923531 | None:intergenic | 35.0% | |
| ! | GTTCTTTTATAGAGAACCTG+AGG | - | chr7_4:20923512-20923531 | Msa1144630:intron | 35.0% |
| !! | GCTATTACTGACTTTAATGC+AGG | - | chr7_4:20923579-20923598 | Msa1144630:intron | 35.0% |
| ATCAAAGCTGAGAGATATCA+AGG | + | chr7_4:20923795-20923814 | None:intergenic | 35.0% | |
| ATTTCCTCTAATCCTGTCAT+TGG | - | chr7_4:20923832-20923851 | Msa1144630:intron | 35.0% | |
| AATTAGCAAATGCCAATGAC+AGG | + | chr7_4:20923847-20923866 | None:intergenic | 35.0% | |
| !!! | CAGATGTTACTTTTGGGAAA+GGG | + | chr7_4:20924162-20924181 | None:intergenic | 35.0% |
| !! | CAGAAGTATTGTTTACGACT+TGG | - | chr7_4:20924232-20924251 | Msa1144630:intron | 35.0% |
| !!! | GGGTAGGGTTTTTAAGTTCT+TGG | + | chr7_4:20921726-20921745 | None:intergenic | 40.0% |
| TGGAGCAACTTCAACAGTTA+GGG | + | chr7_4:20921792-20921811 | None:intergenic | 40.0% | |
| ATGGAGCAACTTCAACAGTT+AGG | + | chr7_4:20921793-20921812 | None:intergenic | 40.0% | |
| ! | TTTAGTACCGAGATGGACAT+CGG | + | chr7_4:20921916-20921935 | None:intergenic | 40.0% |
| GTTCAATCTGCTAGACCTTA+TGG | - | chr7_4:20922172-20922191 | Msa1144630:CDS | 40.0% | |
| TGATCCAAGAACTGATCATC+AGG | - | chr7_4:20922321-20922340 | Msa1144630:intron | 40.0% | |
| GAAACCTGATGATCAGTTCT+TGG | + | chr7_4:20922328-20922347 | None:intergenic | 40.0% | |
| ATGTTATTGTGGGGAGCTTA+TGG | - | chr7_4:20922667-20922686 | Msa1144630:CDS | 40.0% | |
| ACAGACAAAAGCAGACAATC+TGG | + | chr7_4:20923086-20923105 | None:intergenic | 40.0% | |
| !!! | AGGATGTCTGTTTTGGCTTT+TGG | - | chr7_4:20923284-20923303 | Msa1144630:intron | 40.0% |
| TTACCATGACATCCCACTTA+AGG | + | chr7_4:20923350-20923369 | None:intergenic | 40.0% | |
| ! | TCTTGGGTTTTCTTTGATGC+AGG | - | chr7_4:20923482-20923501 | Msa1144630:intron | 40.0% |
| ! | CTTTTATAGAGAACCTGAGG+AGG | - | chr7_4:20923515-20923534 | Msa1144630:intron | 40.0% |
| GTAATAGCATAATCTGGTGC+AGG | + | chr7_4:20923567-20923586 | None:intergenic | 40.0% | |
| GAACTGCATCATTCCATGTT+TGG | + | chr7_4:20923644-20923663 | None:intergenic | 40.0% | |
| AGAGGAAATTTGAGAGATCG+AGG | + | chr7_4:20923821-20923840 | None:intergenic | 40.0% | |
| AATGCCAATGACAGGATTAG+AGG | + | chr7_4:20923839-20923858 | None:intergenic | 40.0% | |
| !!! | TGTTACTTTTGGGAAAGGGA+AGG | + | chr7_4:20924158-20924177 | None:intergenic | 40.0% |
| !!! | CCAGATGTTACTTTTGGGAA+AGG | + | chr7_4:20924163-20924182 | None:intergenic | 40.0% |
| CCTTTCCCAAAAGTAACATC+TGG | - | chr7_4:20924160-20924179 | Msa1144630:intron | 40.0% | |
| GAAATGAAACTGGGTGGGTA+GGG | + | chr7_4:20921741-20921760 | None:intergenic | 45.0% | |
| AGAAATGAAACTGGGTGGGT+AGG | + | chr7_4:20921742-20921761 | None:intergenic | 45.0% | |
| GCAGAGTGAGGTTGAGATTA+GGG | + | chr7_4:20921822-20921841 | None:intergenic | 45.0% | |
| AGCAGAGTGAGGTTGAGATT+AGG | + | chr7_4:20921823-20921842 | None:intergenic | 45.0% | |
| ! | TTTCTGAGAGAGTTGACGAG+GGG | + | chr7_4:20921865-20921884 | None:intergenic | 45.0% |
| ! | CTTTCTGAGAGAGTTGACGA+GGG | + | chr7_4:20921866-20921885 | None:intergenic | 45.0% |
| ! | TCTTTCTGAGAGAGTTGACG+AGG | + | chr7_4:20921867-20921886 | None:intergenic | 45.0% |
| !!! | CGCAGTTTTTAGTACCGAGA+TGG | + | chr7_4:20921923-20921942 | None:intergenic | 45.0% |
| AGAACAGCTCTCTGTCCATA+AGG | + | chr7_4:20922190-20922209 | None:intergenic | 45.0% | |
| AAGTTTCATTCAGTGAGCCC+AGG | - | chr7_4:20922284-20922303 | Msa1144630:intron | 45.0% | |
| TCAGTGAGGATAAGAAGCCT+GGG | + | chr7_4:20922304-20922323 | None:intergenic | 45.0% | |
| ATCAGTGAGGATAAGAAGCC+TGG | + | chr7_4:20922305-20922324 | None:intergenic | 45.0% | |
| GATCAGTTCTTGGATCAGTG+AGG | + | chr7_4:20922318-20922337 | None:intergenic | 45.0% | |
| CAAAAACCAATGGGGCTGTT+TGG | + | chr7_4:20922787-20922806 | None:intergenic | 45.0% | |
| !! | GTTTTAAGCCTCTCCCAAGT+TGG | - | chr7_4:20923009-20923028 | Msa1144630:CDS | 45.0% |
| CTTGTAAACCAACTTGGGAG+AGG | + | chr7_4:20923020-20923039 | None:intergenic | 45.0% | |
| TGTTTGTGTGCAGCCAATCA+AGG | - | chr7_4:20923155-20923174 | Msa1144630:intron | 45.0% | |
| CCAATGTCGACATATCGCAT+AGG | + | chr7_4:20923231-20923250 | None:intergenic | 45.0% | |
| CCTATGCGATATGTCGACAT+TGG | - | chr7_4:20923228-20923247 | Msa1144630:intron | 45.0% | |
| AACAAGGGCAAGCACAGTAT+AGG | - | chr7_4:20923264-20923283 | Msa1144630:intron | 45.0% | |
| !!! | GTCTGTTTTGGCTTTTGGCT+AGG | - | chr7_4:20923289-20923308 | Msa1144630:intron | 45.0% |
| !!! | GTTTTGGCTTTTGGCTAGGA+TGG | - | chr7_4:20923293-20923312 | Msa1144630:intron | 45.0% |
| TGGGGAACAATTGCCACATA+TGG | + | chr7_4:20923427-20923446 | None:intergenic | 45.0% | |
| ATGTGGCAATTGTTCCCCAT+CGG | - | chr7_4:20923428-20923447 | Msa1144630:intron | 45.0% | |
| ! | TTGTTCCCCATCGGTTGAAT+TGG | - | chr7_4:20923437-20923456 | Msa1144630:intron | 45.0% |
| AACCTGCCAATTCAACCGAT+GGG | + | chr7_4:20923446-20923465 | None:intergenic | 45.0% | |
| AAACCTGCCAATTCAACCGA+TGG | + | chr7_4:20923447-20923466 | None:intergenic | 45.0% | |
| !! | CTATCCCCAATGATGGACAA+TGG | - | chr7_4:20923604-20923623 | Msa1144630:intron | 45.0% |
| TCGATCAAGTACCAGCTTCT+GGG | + | chr7_4:20923707-20923726 | None:intergenic | 45.0% | |
| ATCGATCAAGTACCAGCTTC+TGG | + | chr7_4:20923708-20923727 | None:intergenic | 45.0% | |
| TAGATTTGTCTTGCAGCTGC+AGG | - | chr7_4:20924003-20924022 | Msa1144630:CDS | 45.0% | |
| AGATTTGTCTTGCAGCTGCA+GGG | - | chr7_4:20924004-20924023 | Msa1144630:CDS | 45.0% | |
| !! | AGGAGCAGGTATTTGTTGTG+GGG | + | chr7_4:20924055-20924074 | None:intergenic | 45.0% |
| !! | CAGGAGCAGGTATTTGTTGT+GGG | + | chr7_4:20924056-20924075 | None:intergenic | 45.0% |
| ACAAACGTAGACCAAGAACC+AGG | + | chr7_4:20924340-20924359 | None:intergenic | 45.0% | |
| ! | ATCTTCAAGCGCCGTAACGA+TGG | - | chr7_4:20921963-20921982 | Msa1144630:three_prime_UTR | 50.0% |
| ! | ACTGGTGCCAATGCTATTGC+TGG | - | chr7_4:20922226-20922245 | Msa1144630:intron | 50.0% |
| GTGCCAATGCTATTGCTGGA+AGG | - | chr7_4:20922230-20922249 | Msa1144630:intron | 50.0% | |
| GTGCCTTCCAGCAATAGCAT+TGG | + | chr7_4:20922236-20922255 | None:intergenic | 50.0% | |
| GTCAATCCAAACAGCCCCAT+TGG | - | chr7_4:20922778-20922797 | Msa1144630:intron | 50.0% | |
| CCAAGAGCAGCTTCCTTGAT+TGG | + | chr7_4:20923171-20923190 | None:intergenic | 50.0% | |
| CCAATCAAGGAAGCTGCTCT+TGG | - | chr7_4:20923168-20923187 | Msa1144630:intron | 50.0% | |
| TGGAATCCCTGCCAACAACA+AGG | - | chr7_4:20923248-20923267 | Msa1144630:intron | 50.0% | |
| GGAATCCCTGCCAACAACAA+GGG | - | chr7_4:20923249-20923268 | Msa1144630:intron | 50.0% | |
| ! | ACTGTGCTTGCCCTTGTTGT+TGG | + | chr7_4:20923262-20923281 | None:intergenic | 50.0% |
| TGACATCCCACTTAAGGCCA+GGG | + | chr7_4:20923344-20923363 | None:intergenic | 50.0% | |
| ATGACATCCCACTTAAGGCC+AGG | + | chr7_4:20923345-20923364 | None:intergenic | 50.0% | |
| ! | TGGCCTTAAGTGGGATGTCA+TGG | - | chr7_4:20923344-20923363 | Msa1144630:intron | 50.0% |
| ACCTGCCAATTCAACCGATG+GGG | + | chr7_4:20923445-20923464 | None:intergenic | 50.0% | |
| TAGAGAACCTGAGGAGGCAA+AGG | - | chr7_4:20923521-20923540 | Msa1144630:intron | 50.0% | |
| GCAGGTTCTATCCCCAATGA+TGG | - | chr7_4:20923597-20923616 | Msa1144630:intron | 50.0% | |
| CAGGCCATTGTCCATCATTG+GGG | + | chr7_4:20923611-20923630 | None:intergenic | 50.0% | |
| GCAGGCCATTGTCCATCATT+GGG | + | chr7_4:20923612-20923631 | None:intergenic | 50.0% | |
| AGCAGGCCATTGTCCATCAT+TGG | + | chr7_4:20923613-20923632 | None:intergenic | 50.0% | |
| CATGTTTGGTCGATAGCAGC+AGG | + | chr7_4:20923630-20923649 | None:intergenic | 50.0% | |
| CTGCTGCTATCGACCAAACA+TGG | - | chr7_4:20923628-20923647 | Msa1144630:intron | 50.0% | |
| ACAGCAGGAACTGCTGGAAT+AGG | + | chr7_4:20923672-20923691 | None:intergenic | 50.0% | |
| AGCAGTTCCTGCTGTCAACT+GGG | - | chr7_4:20923677-20923696 | Msa1144630:intron | 50.0% | |
| CGATCAAGTACCAGCTTCTG+GGG | + | chr7_4:20923706-20923725 | None:intergenic | 50.0% | |
| GATTTGTCTTGCAGCTGCAG+GGG | - | chr7_4:20924005-20924024 | Msa1144630:CDS | 50.0% | |
| ATTTGTCTTGCAGCTGCAGG+GGG | - | chr7_4:20924006-20924025 | Msa1144630:CDS | 50.0% | |
| ! | CCAGGAGCAGGTATTTGTTG+TGG | + | chr7_4:20924057-20924076 | None:intergenic | 50.0% |
| CCACAACAAATACCTGCTCC+TGG | - | chr7_4:20924054-20924073 | Msa1144630:CDS | 50.0% | |
| GTTGAGTCCATCCAAGCAAC+TGG | - | chr7_4:20924078-20924097 | Msa1144630:CDS | 50.0% | |
| CTTATTCCCAGCCAGTTGCT+TGG | + | chr7_4:20924092-20924111 | None:intergenic | 50.0% | |
| ACTGGCTGGGAATAAGCTAG+TGG | - | chr7_4:20924096-20924115 | Msa1144630:CDS | 50.0% | |
| ! | TGATTTCCCCTCCTGGTTCT+TGG | - | chr7_4:20924326-20924345 | Msa1144630:CDS | 50.0% |
| ACGTAGACCAAGAACCAGGA+GGG | + | chr7_4:20924336-20924355 | None:intergenic | 50.0% | |
| AACGTAGACCAAGAACCAGG+AGG | + | chr7_4:20924337-20924356 | None:intergenic | 50.0% | |
| ! | AGTACCGAGATGGACATCGG+CGG | + | chr7_4:20921913-20921932 | None:intergenic | 55.0% |
| !! | GCTTGCCCTTGTTGTTGGCA+GGG | + | chr7_4:20923257-20923276 | None:intergenic | 55.0% |
| !! | TGCTTGCCCTTGTTGTTGGC+AGG | + | chr7_4:20923258-20923277 | None:intergenic | 55.0% |
| !! | AGGATGGTGTTGCAGATGCG+TGG | - | chr7_4:20923309-20923328 | Msa1144630:intron | 55.0% |
| !! | CATTCGCCCTGGCCTTAAGT+GGG | - | chr7_4:20923335-20923354 | Msa1144630:intron | 55.0% |
| ! | TCCCCATCGGTTGAATTGGC+AGG | - | chr7_4:20923441-20923460 | Msa1144630:intron | 55.0% |
| TCTTGCTCCTTTGCCTCCTC+AGG | + | chr7_4:20923531-20923550 | None:intergenic | 55.0% | |
| TGAGGAGGCAAAGGAGCAAG+AGG | - | chr7_4:20923530-20923549 | Msa1144630:intron | 55.0% | |
| GGAACTGCTGGAATAGGCTC+TGG | + | chr7_4:20923666-20923685 | None:intergenic | 55.0% | |
| CAGTTGACAGCAGGAACTGC+TGG | + | chr7_4:20923678-20923697 | None:intergenic | 55.0% | |
| CAGCAGTTCCTGCTGTCAAC+TGG | - | chr7_4:20923676-20923695 | Msa1144630:intron | 55.0% | |
| TTTGTCTTGCAGCTGCAGGG+GGG | - | chr7_4:20924007-20924026 | Msa1144630:CDS | 55.0% | |
| !! | GCAGGTATTTGTTGTGGGGC+TGG | + | chr7_4:20924051-20924070 | None:intergenic | 55.0% |
| ATGGACTCAACTCCAGGAGC+AGG | + | chr7_4:20924069-20924088 | None:intergenic | 55.0% | |
| ! | GCTTGGATGGACTCAACTCC+AGG | + | chr7_4:20924075-20924094 | None:intergenic | 55.0% |
| AGTCCATCCAAGCAACTGGC+TGG | - | chr7_4:20924082-20924101 | Msa1144630:CDS | 55.0% | |
| GTCCATCCAAGCAACTGGCT+GGG | - | chr7_4:20924083-20924102 | Msa1144630:CDS | 55.0% | |
| TTCCCAGCCAGTTGCTTGGA+TGG | + | chr7_4:20924088-20924107 | None:intergenic | 55.0% | |
| GTTGAGGTGATTTCCCCTCC+TGG | - | chr7_4:20924319-20924338 | Msa1144630:CDS | 55.0% | |
| CGTAGACCAAGAACCAGGAG+GGG | + | chr7_4:20924335-20924354 | None:intergenic | 55.0% | |
| ! | GTGGCGGAAGTAGCAGAGTG+AGG | + | chr7_4:20921834-20921853 | None:intergenic | 60.0% |
| ! | CTCTGCTACTTCCGCCACCA+TGG | - | chr7_4:20921836-20921855 | Msa1144630:three_prime_UTR | 60.0% |
| CTGAGAGAGTTGACGAGGGG+CGG | + | chr7_4:20921862-20921881 | None:intergenic | 60.0% | |
| CATCGGCGGCAAGCATCATC+TGG | + | chr7_4:20921899-20921918 | None:intergenic | 60.0% | |
| CTTGCCGCCGATGTCCATCT+CGG | - | chr7_4:20921906-20921925 | Msa1144630:three_prime_UTR | 60.0% | |
| ! | ATTGCTGGAAGGCACACGCC+TGG | - | chr7_4:20922241-20922260 | Msa1144630:intron | 60.0% |
| ATGCGTGGAACCATTCGCCC+TGG | - | chr7_4:20923324-20923343 | Msa1144630:intron | 60.0% | |
| CCACTTAAGGCCAGGGCGAA+TGG | + | chr7_4:20923337-20923356 | None:intergenic | 60.0% | |
| !! | CCATTCGCCCTGGCCTTAAG+TGG | - | chr7_4:20923334-20923353 | Msa1144630:intron | 60.0% |
| TTGTCTTGCAGCTGCAGGGG+GGG | - | chr7_4:20924008-20924027 | Msa1144630:CDS | 60.0% | |
| AACTGGGCAGCCCCAGAAGC+TGG | - | chr7_4:20923693-20923712 | Msa1144630:intron | 65.0% | |
| TTGCAGCTGCAGGGGGGGAT+TGG | - | chr7_4:20924013-20924032 | Msa1144630:CDS | 65.0% | |
| TGCAGCTGCAGGGGGGGATT+GGG | - | chr7_4:20924014-20924033 | Msa1144630:CDS | 65.0% | |
| TTGACGAGGGGCGGCCATGG+TGG | + | chr7_4:20921853-20921872 | None:intergenic | 70.0% | |
| GAGTTGACGAGGGGCGGCCA+TGG | + | chr7_4:20921856-20921875 | None:intergenic | 70.0% | |
| GGGGCTGCCCAGTTGACAGC+AGG | + | chr7_4:20923687-20923706 | None:intergenic | 70.0% | |
| GCAGCTGCAGGGGGGGATTG+GGG | - | chr7_4:20924015-20924034 | Msa1144630:CDS | 70.0% | |
| ACGAGGGGCGGCCATGGTGG+CGG | + | chr7_4:20921850-20921869 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 20921717 | 20924510 | 20921717 | ID=Msa1144630;Name=Msa1144630 |
| chr7_4 | mRNA | 20921717 | 20924510 | 20921717 | ID=Msa1144630-mRNA-1;Parent=Msa1144630;Name=Msa1144630-mRNA-1;_AED=0.05;_eAED=0.05;_QI=138|1|1|1|1|1|5|400|297 |
| chr7_4 | exon | 20921717 | 20922208 | 20921717 | ID=Msa1144630-mRNA-1:exon:5014;Parent=Msa1144630-mRNA-1 |
| chr7_4 | exon | 20922513 | 20922723 | 20922513 | ID=Msa1144630-mRNA-1:exon:5013;Parent=Msa1144630-mRNA-1 |
| chr7_4 | exon | 20922862 | 20923059 | 20922862 | ID=Msa1144630-mRNA-1:exon:5012;Parent=Msa1144630-mRNA-1 |
| chr7_4 | exon | 20923885 | 20924147 | 20923885 | ID=Msa1144630-mRNA-1:exon:5011;Parent=Msa1144630-mRNA-1 |
| chr7_4 | exon | 20924243 | 20924510 | 20924243 | ID=Msa1144630-mRNA-1:exon:5010;Parent=Msa1144630-mRNA-1 |
| chr7_4 | five_prime_UTR | 20924373 | 20924510 | 20924373 | ID=Msa1144630-mRNA-1:five_prime_utr;Parent=Msa1144630-mRNA-1 |
| chr7_4 | CDS | 20924243 | 20924372 | 20924243 | ID=Msa1144630-mRNA-1:cds;Parent=Msa1144630-mRNA-1 |
| chr7_4 | CDS | 20923885 | 20924147 | 20923885 | ID=Msa1144630-mRNA-1:cds;Parent=Msa1144630-mRNA-1 |
| chr7_4 | CDS | 20922862 | 20923059 | 20922862 | ID=Msa1144630-mRNA-1:cds;Parent=Msa1144630-mRNA-1 |
| chr7_4 | CDS | 20922513 | 20922723 | 20922513 | ID=Msa1144630-mRNA-1:cds;Parent=Msa1144630-mRNA-1 |
| chr7_4 | CDS | 20922117 | 20922208 | 20922117 | ID=Msa1144630-mRNA-1:cds;Parent=Msa1144630-mRNA-1 |
| chr7_4 | three_prime_UTR | 20921717 | 20922116 | 20921717 | ID=Msa1144630-mRNA-1:three_prime_utr;Parent=Msa1144630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
