Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859400 | XP_027193035.1 | 59.200 | 125 | 39 | 3 | 87 | 200 | 233 | 356 | 2.09e-34 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859400 | A0A3Q7YGY2 | 59.200 | 125 | 39 | 3 | 87 | 200 | 233 | 356 | 1.00e-34 | 139 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0622650 | Msa0859400 | 0.800651 | 1.303848e-48 | -8.615850e-47 |
| Msa0672690 | Msa0859400 | 0.805840 | 1.099217e-49 | -8.615850e-47 |
| Msa0859400 | Msa0900620 | 0.819100 | 1.386759e-52 | -8.615850e-47 |
| Msa0859400 | Msa0931520 | 0.801701 | 7.951250e-49 | -8.615850e-47 |
| Msa0859400 | Msa0995710 | 0.911516 | 5.565327e-83 | -8.615850e-47 |
| Msa0859400 | Msa1082500 | 0.801155 | 1.029049e-48 | -8.615850e-47 |
| Msa0859400 | Msa1087980 | 0.809072 | 2.266725e-50 | -8.615850e-47 |
| Msa0859400 | Msa1297290 | 0.820058 | 8.383956e-53 | -8.615850e-47 |
| Msa0859400 | Msa1385000 | 0.820693 | 5.994197e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859400 | MtrunA17_Chr4g0010371 | 65.854 | 41 | 14 | 0 | 147 | 187 | 60 | 100 | 2.00e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859400 | AT5G33406.1 | 60.000 | 50 | 20 | 0 | 142 | 191 | 211 | 260 | 2.63e-15 | 74.7 |
Find 48 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAGTTTACTTCTCTTCT+TGG | 0.123186 | 5_4:+57734157 | None:intergenic |
| TCCTCTTCACCATAATAATT+TGG | 0.200278 | 5_4:+57733741 | None:intergenic |
| CAAGGGACCTTTCTTGGCTT+TGG | 0.208766 | 5_4:+57735821 | None:intergenic |
| AGACACCAATTGGGAATTTC+GGG | 0.256256 | 5_4:-57736038 | Msa0859400:CDS |
| AAGACACCAATTGGGAATTT+CGG | 0.269397 | 5_4:-57736039 | Msa0859400:CDS |
| TACATCCAAGGGACCTTTCT+TGG | 0.273800 | 5_4:+57735815 | None:intergenic |
| AAGGGACCTTTCTTGGCTTT+GGG | 0.276010 | 5_4:+57735822 | None:intergenic |
| GAGGATGATCCAAATTATTA+TGG | 0.286471 | 5_4:-57733750 | Msa0859400:CDS |
| GGCATTGTTGCAAGCTGATT+TGG | 0.294913 | 5_4:-57735976 | Msa0859400:CDS |
| AAGAAGAAATTGAAGAAATA+AGG | 0.315176 | 5_4:-57735890 | Msa0859400:CDS |
| AGTTTGGTTTGTAGTGCTTC+AGG | 0.326354 | 5_4:-57734312 | Msa0859400:CDS |
| CTTCAGGATGTGAGCGCAAC+TGG | 0.351319 | 5_4:-57734296 | Msa0859400:CDS |
| GCTGAGTGGTGGATGAATTA+TGG | 0.375891 | 5_4:-57734378 | Msa0859400:CDS |
| AAGAAGATGATGATGATAAT+TGG | 0.385196 | 5_4:-57733776 | Msa0859400:CDS |
| AACCAAACTCAGCACTTTGA+TGG | 0.386442 | 5_4:+57734326 | None:intergenic |
| GGCCATCAAAGTGCTGAGTT+TGG | 0.386630 | 5_4:-57734328 | Msa0859400:CDS |
| TAGAGCAAGAAGACACCAAT+TGG | 0.390410 | 5_4:-57736048 | Msa0859400:CDS |
| GTTGAGTTCCAAGTGCAATA+AGG | 0.408152 | 5_4:-57734972 | Msa0859400:CDS |
| TTTAACCAACTCAACATTGT+TGG | 0.417354 | 5_4:+57735090 | None:intergenic |
| TAAAACACCAGCAGAGGTTA+AGG | 0.447094 | 5_4:-57735997 | Msa0859400:CDS |
| GAAATAAGGAGAATTCGAAC+TGG | 0.469581 | 5_4:-57735876 | Msa0859400:CDS |
| AACAATGCCTTAACCTCTGC+TGG | 0.488665 | 5_4:+57735990 | None:intergenic |
| AACTCCGGATTTGACACTAA+TGG | 0.490085 | 5_4:-57734349 | Msa0859400:CDS |
| CATCACCCGAAATTCCCAAT+TGG | 0.492268 | 5_4:+57736033 | None:intergenic |
| TTTAGCTTCCTTATTGCACT+TGG | 0.494175 | 5_4:+57734964 | None:intergenic |
| CATCATCATCTAGTAGAGCT+TGG | 0.506423 | 5_4:+57735916 | None:intergenic |
| ATGGCCATTAGTGTCAAATC+CGG | 0.512170 | 5_4:+57734345 | None:intergenic |
| CTCCATAAACATTACATCCA+AGG | 0.515071 | 5_4:+57735803 | None:intergenic |
| CAAAGCCAAGAAAGGTCCCT+TGG | 0.519271 | 5_4:-57735820 | Msa0859400:CDS |
| GAAAACCAACAATGTTGAGT+TGG | 0.522947 | 5_4:-57735095 | Msa0859400:CDS |
| CCACATTTCTTACTTTGCAA+AGG | 0.529530 | 5_4:-57735045 | Msa0859400:CDS |
| CATTTGCTTTGAGCCTAATG+AGG | 0.529987 | 5_4:-57735120 | Msa0859400:intron |
| TCTGCTCCCAAAGCCAAGAA+AGG | 0.546960 | 5_4:-57735828 | Msa0859400:CDS |
| TCCATAAACATTACATCCAA+GGG | 0.547526 | 5_4:+57735804 | None:intergenic |
| AGAGCAAGAAGACACCAATT+GGG | 0.549667 | 5_4:-57736047 | Msa0859400:CDS |
| AAGTGCAATAAGGAAGCTAA+AGG | 0.551734 | 5_4:-57734962 | Msa0859400:intron |
| TGTGATAAGGTCAGCAGTGG+AGG | 0.574524 | 5_4:-57736077 | None:intergenic |
| GGAGAATTCGAACTGGAAAG+AGG | 0.585181 | 5_4:-57735869 | Msa0859400:CDS |
| AATGTTGAGTTGGTTAAACA+TGG | 0.586870 | 5_4:-57735085 | Msa0859400:CDS |
| TTCTGTGATAAGGTCAGCAG+TGG | 0.588382 | 5_4:-57736080 | None:intergenic |
| GAATTATGGAGCAGAAACTC+CGG | 0.589304 | 5_4:-57734364 | Msa0859400:CDS |
| TCCAAATTATTATGGTGAAG+AGG | 0.591275 | 5_4:-57733742 | Msa0859400:CDS |
| AGATGATGATGATAATTGGT+TGG | 0.592842 | 5_4:-57733772 | Msa0859400:CDS |
| TGGTTAAACATGGAGTCACA+AGG | 0.606856 | 5_4:-57735075 | Msa0859400:CDS |
| TGATGATGATAATTGGTTGG+AGG | 0.612525 | 5_4:-57733769 | Msa0859400:CDS |
| GCAGACAAAGATGAATCAGA+TGG | 0.622454 | 5_4:+57735846 | None:intergenic |
| ATGTCGTAAAACACCAGCAG+AGG | 0.643636 | 5_4:-57736003 | Msa0859400:CDS |
| CCTTTGCAAAGTAAGAAATG+TGG | 0.689473 | 5_4:+57735045 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAGGATATACAAAA+GGG | - | chr5_4:57734609-57734628 | Msa0859400:intron | 15.0% |
| !!! | AAAAATTTCAATTTTAATGC+AGG | - | chr5_4:57735014-57735033 | Msa0859400:CDS | 15.0% |
| !!! | ATTTTAATTATCATACTGAA+TGG | - | chr5_4:57735747-57735766 | Msa0859400:intron | 15.0% |
| !! | ATTAAAAAGGATATACAAAA+GGG | - | chr5_4:57734609-57734628 | Msa0859400:intron | 15.0% |
| !!! | AAAAATTTCAATTTTAATGC+AGG | - | chr5_4:57735014-57735033 | Msa0859400:CDS | 15.0% |
| !!! | ATTTTAATTATCATACTGAA+TGG | - | chr5_4:57735747-57735766 | Msa0859400:intron | 15.0% |
| !! | AAGAAGAAATTGAAGAAATA+AGG | - | chr5_4:57733894-57733913 | Msa0859400:intron | 20.0% |
| !!! | TAGAACCTTGATTAATTTTT+TGG | - | chr5_4:57734323-57734342 | Msa0859400:CDS | 20.0% |
| !! | ATTCACCAAAAAATTAATCA+AGG | + | chr5_4:57734331-57734350 | None:intergenic | 20.0% |
| !! | GATTAAAAAGGATATACAAA+AGG | - | chr5_4:57734608-57734627 | Msa0859400:intron | 20.0% |
| !! | TTAAAAAGGATATACAAAAG+GGG | - | chr5_4:57734610-57734629 | Msa0859400:intron | 20.0% |
| !! | TCAAAATCATTGATAAAAGA+TGG | - | chr5_4:57735054-57735073 | Msa0859400:CDS | 20.0% |
| !! | CAAAATCATTGATAAAAGAT+GGG | - | chr5_4:57735055-57735074 | Msa0859400:CDS | 20.0% |
| !!! | TATAAAAGTATTTAGGATTG+AGG | + | chr5_4:57735121-57735140 | None:intergenic | 20.0% |
| !!! | GGTTTACTATAAAAGTATTT+AGG | + | chr5_4:57735128-57735147 | None:intergenic | 20.0% |
| !! | ATTAAAATCATACAACATCA+CGG | + | chr5_4:57735735-57735754 | None:intergenic | 20.0% |
| !! | AAGAAGAAATTGAAGAAATA+AGG | - | chr5_4:57733894-57733913 | Msa0859400:intron | 20.0% |
| !!! | TAGAACCTTGATTAATTTTT+TGG | - | chr5_4:57734323-57734342 | Msa0859400:CDS | 20.0% |
| !! | ATTCACCAAAAAATTAATCA+AGG | + | chr5_4:57734331-57734350 | None:intergenic | 20.0% |
| !! | GATTAAAAAGGATATACAAA+AGG | - | chr5_4:57734608-57734627 | Msa0859400:intron | 20.0% |
| !! | TTAAAAAGGATATACAAAAG+GGG | - | chr5_4:57734610-57734629 | Msa0859400:intron | 20.0% |
| !! | TCAAAATCATTGATAAAAGA+TGG | - | chr5_4:57735054-57735073 | Msa0859400:CDS | 20.0% |
| !! | CAAAATCATTGATAAAAGAT+GGG | - | chr5_4:57735055-57735074 | Msa0859400:CDS | 20.0% |
| !!! | TATAAAAGTATTTAGGATTG+AGG | + | chr5_4:57735121-57735140 | None:intergenic | 20.0% |
| !!! | GGTTTACTATAAAAGTATTT+AGG | + | chr5_4:57735128-57735147 | None:intergenic | 20.0% |
| !! | ATTAAAATCATACAACATCA+CGG | + | chr5_4:57735735-57735754 | None:intergenic | 20.0% |
| ! | GAGAAAAAAAGAAAATCAGA+AGG | - | chr5_4:57733833-57733852 | Msa0859400:intron | 25.0% |
| ! | AAAACACTTCAAAGAAATGT+TGG | - | chr5_4:57734129-57734148 | Msa0859400:intron | 25.0% |
| ! | ACCAAGCTATTATGAAATTA+GGG | - | chr5_4:57734186-57734205 | Msa0859400:intron | 25.0% |
| ! | TAAGATTCCTAGGATTAAAA+AGG | - | chr5_4:57734596-57734615 | Msa0859400:intron | 25.0% |
| !! | TGTATATCCTTTTTAATCCT+AGG | + | chr5_4:57734606-57734625 | None:intergenic | 25.0% |
| !!! | AGATGTTTTTATGTGAAGAA+TGG | - | chr5_4:57734790-57734809 | Msa0859400:intron | 25.0% |
| !! | TTTAGAGTATCTTACAATCT+TGG | - | chr5_4:57735563-57735582 | Msa0859400:intron | 25.0% |
| ! | TTAAAATCATACAACATCAC+GGG | + | chr5_4:57735734-57735753 | None:intergenic | 25.0% |
| ! | ATGAAAATGATGATCTAACT+TGG | - | chr5_4:57735828-57735847 | Msa0859400:CDS | 25.0% |
| ! | TGAAAATGATGATCTAACTT+GGG | - | chr5_4:57735829-57735848 | Msa0859400:CDS | 25.0% |
| !! | AAGAAGATGATGATGATAAT+TGG | - | chr5_4:57736008-57736027 | Msa0859400:CDS | 25.0% |
| ! | GAGAAAAAAAGAAAATCAGA+AGG | - | chr5_4:57733833-57733852 | Msa0859400:intron | 25.0% |
| ! | AAAACACTTCAAAGAAATGT+TGG | - | chr5_4:57734129-57734148 | Msa0859400:intron | 25.0% |
| ! | ACCAAGCTATTATGAAATTA+GGG | - | chr5_4:57734186-57734205 | Msa0859400:intron | 25.0% |
| ! | TAAGATTCCTAGGATTAAAA+AGG | - | chr5_4:57734596-57734615 | Msa0859400:intron | 25.0% |
| !! | TGTATATCCTTTTTAATCCT+AGG | + | chr5_4:57734606-57734625 | None:intergenic | 25.0% |
| !!! | AGATGTTTTTATGTGAAGAA+TGG | - | chr5_4:57734790-57734809 | Msa0859400:intron | 25.0% |
| !! | TTTAGAGTATCTTACAATCT+TGG | - | chr5_4:57735563-57735582 | Msa0859400:intron | 25.0% |
| ! | TTAAAATCATACAACATCAC+GGG | + | chr5_4:57735734-57735753 | None:intergenic | 25.0% |
| ! | ATGAAAATGATGATCTAACT+TGG | - | chr5_4:57735828-57735847 | Msa0859400:CDS | 25.0% |
| ! | TGAAAATGATGATCTAACTT+GGG | - | chr5_4:57735829-57735848 | Msa0859400:CDS | 25.0% |
| !! | AAGAAGATGATGATGATAAT+TGG | - | chr5_4:57736008-57736027 | Msa0859400:CDS | 25.0% |
| TCCATAAACATTACATCCAA+GGG | + | chr5_4:57733983-57734002 | None:intergenic | 30.0% | |
| !! | AACATTTGTTTTCCTAGAAC+TGG | + | chr5_4:57734017-57734036 | None:intergenic | 30.0% |
| GAATCGAGCAATAAATTGTA+TGG | + | chr5_4:57734071-57734090 | None:intergenic | 30.0% | |
| ! | GCTCGATTCTTTTATACAAA+TGG | - | chr5_4:57734082-57734101 | Msa0859400:intron | 30.0% |
| !! | GAATTGCTTTTAATGTTGCA+CGG | - | chr5_4:57734104-57734123 | Msa0859400:intron | 30.0% |
| AAAGAAATGTTGGAAGTTGT+TGG | - | chr5_4:57734139-57734158 | Msa0859400:intron | 30.0% | |
| CTAATTTCATAATAGCTTGG+TGG | + | chr5_4:57734187-57734206 | None:intergenic | 30.0% | |
| CACCAAGCTATTATGAAATT+AGG | - | chr5_4:57734185-57734204 | Msa0859400:intron | 30.0% | |
| TCCCTAATTTCATAATAGCT+TGG | + | chr5_4:57734190-57734209 | None:intergenic | 30.0% | |
| ! | TAATCAAGGTTCTACCTTTT+CGG | + | chr5_4:57734317-57734336 | None:intergenic | 30.0% |
| !! | AGTGATTTTGTTGATGAGAT+GGG | - | chr5_4:57734432-57734451 | Msa0859400:intron | 30.0% |
| AAGATATTGGTAAGATTCCT+AGG | - | chr5_4:57734586-57734605 | Msa0859400:intron | 30.0% | |
| TTTAACCAACTCAACATTGT+TGG | + | chr5_4:57734697-57734716 | None:intergenic | 30.0% | |
| !! | AATGTTGAGTTGGTTAAACA+TGG | - | chr5_4:57734699-57734718 | Msa0859400:intron | 30.0% |
| TAAAAACATCTCTCTAAGCT+TGG | + | chr5_4:57734781-57734800 | None:intergenic | 30.0% | |
| AGTACATCATTCCAAAATGA+TGG | + | chr5_4:57734876-57734895 | None:intergenic | 30.0% | |
| TAATGAGAAAAAACCTGCAA+TGG | - | chr5_4:57734947-57734966 | Msa0859400:intron | 30.0% | |
| AATGAGAAAAAACCTGCAAT+GGG | - | chr5_4:57734948-57734967 | Msa0859400:intron | 30.0% | |
| ACTTTGTGAATGTAATGAAG+TGG | - | chr5_4:57735202-57735221 | Msa0859400:intron | 30.0% | |
| TCTTGTCAAGACAATCATAT+CGG | + | chr5_4:57735706-57735725 | None:intergenic | 30.0% | |
| TAAAATCATACAACATCACG+GGG | + | chr5_4:57735733-57735752 | None:intergenic | 30.0% | |
| TATCATACTGAATGGTTAAC+AGG | - | chr5_4:57735755-57735774 | Msa0859400:intron | 30.0% | |
| ATCATACTGAATGGTTAACA+GGG | - | chr5_4:57735756-57735775 | Msa0859400:intron | 30.0% | |
| TCATGAACAAATTCTTCAAC+AGG | + | chr5_4:57735812-57735831 | None:intergenic | 30.0% | |
| ! | GTATTTGTTGAAGATGTTGT+AGG | - | chr5_4:57735977-57735996 | Msa0859400:CDS | 30.0% |
| ! | AGATGATGATGATAATTGGT+TGG | - | chr5_4:57736012-57736031 | Msa0859400:CDS | 30.0% |
| GAGGATGATCCAAATTATTA+TGG | - | chr5_4:57736034-57736053 | Msa0859400:CDS | 30.0% | |
| TCCAAATTATTATGGTGAAG+AGG | - | chr5_4:57736042-57736061 | Msa0859400:CDS | 30.0% | |
| TCCTCTTCACCATAATAATT+TGG | + | chr5_4:57736046-57736065 | None:intergenic | 30.0% | |
| TCCATAAACATTACATCCAA+GGG | + | chr5_4:57733983-57734002 | None:intergenic | 30.0% | |
| !! | AACATTTGTTTTCCTAGAAC+TGG | + | chr5_4:57734017-57734036 | None:intergenic | 30.0% |
| GAATCGAGCAATAAATTGTA+TGG | + | chr5_4:57734071-57734090 | None:intergenic | 30.0% | |
| ! | GCTCGATTCTTTTATACAAA+TGG | - | chr5_4:57734082-57734101 | Msa0859400:intron | 30.0% |
| !! | GAATTGCTTTTAATGTTGCA+CGG | - | chr5_4:57734104-57734123 | Msa0859400:intron | 30.0% |
| AAAGAAATGTTGGAAGTTGT+TGG | - | chr5_4:57734139-57734158 | Msa0859400:intron | 30.0% | |
| CTAATTTCATAATAGCTTGG+TGG | + | chr5_4:57734187-57734206 | None:intergenic | 30.0% | |
| CACCAAGCTATTATGAAATT+AGG | - | chr5_4:57734185-57734204 | Msa0859400:intron | 30.0% | |
| TCCCTAATTTCATAATAGCT+TGG | + | chr5_4:57734190-57734209 | None:intergenic | 30.0% | |
| ! | TAATCAAGGTTCTACCTTTT+CGG | + | chr5_4:57734317-57734336 | None:intergenic | 30.0% |
| !! | AGTGATTTTGTTGATGAGAT+GGG | - | chr5_4:57734432-57734451 | Msa0859400:intron | 30.0% |
| AAGATATTGGTAAGATTCCT+AGG | - | chr5_4:57734586-57734605 | Msa0859400:intron | 30.0% | |
| TTTAACCAACTCAACATTGT+TGG | + | chr5_4:57734697-57734716 | None:intergenic | 30.0% | |
| !! | AATGTTGAGTTGGTTAAACA+TGG | - | chr5_4:57734699-57734718 | Msa0859400:intron | 30.0% |
| TAAAAACATCTCTCTAAGCT+TGG | + | chr5_4:57734781-57734800 | None:intergenic | 30.0% | |
| AGTACATCATTCCAAAATGA+TGG | + | chr5_4:57734876-57734895 | None:intergenic | 30.0% | |
| TAATGAGAAAAAACCTGCAA+TGG | - | chr5_4:57734947-57734966 | Msa0859400:intron | 30.0% | |
| AATGAGAAAAAACCTGCAAT+GGG | - | chr5_4:57734948-57734967 | Msa0859400:intron | 30.0% | |
| ACTTTGTGAATGTAATGAAG+TGG | - | chr5_4:57735202-57735221 | Msa0859400:intron | 30.0% | |
| TCTTGTCAAGACAATCATAT+CGG | + | chr5_4:57735706-57735725 | None:intergenic | 30.0% | |
| TAAAATCATACAACATCACG+GGG | + | chr5_4:57735733-57735752 | None:intergenic | 30.0% | |
| TATCATACTGAATGGTTAAC+AGG | - | chr5_4:57735755-57735774 | Msa0859400:intron | 30.0% | |
| ATCATACTGAATGGTTAACA+GGG | - | chr5_4:57735756-57735775 | Msa0859400:intron | 30.0% | |
| TCATGAACAAATTCTTCAAC+AGG | + | chr5_4:57735812-57735831 | None:intergenic | 30.0% | |
| ! | GTATTTGTTGAAGATGTTGT+AGG | - | chr5_4:57735977-57735996 | Msa0859400:CDS | 30.0% |
| ! | AGATGATGATGATAATTGGT+TGG | - | chr5_4:57736012-57736031 | Msa0859400:CDS | 30.0% |
| GAGGATGATCCAAATTATTA+TGG | - | chr5_4:57736034-57736053 | Msa0859400:CDS | 30.0% | |
| TCCAAATTATTATGGTGAAG+AGG | - | chr5_4:57736042-57736061 | Msa0859400:CDS | 30.0% | |
| TCCTCTTCACCATAATAATT+TGG | + | chr5_4:57736046-57736065 | None:intergenic | 30.0% | |
| AAGACACCAATTGGGAATTT+CGG | - | chr5_4:57733745-57733764 | Msa0859400:CDS | 35.0% | |
| !! | AAAATCAGAAGGTATTGCAG+AGG | - | chr5_4:57733844-57733863 | Msa0859400:intron | 35.0% |
| GAAATAAGGAGAATTCGAAC+TGG | - | chr5_4:57733908-57733927 | Msa0859400:intron | 35.0% | |
| TCCCTTGGATGTAATGTTTA+TGG | - | chr5_4:57733979-57733998 | Msa0859400:intron | 35.0% | |
| CTCCATAAACATTACATCCA+AGG | + | chr5_4:57733984-57734003 | None:intergenic | 35.0% | |
| AAGATGCTGATAAAGAAGCA+AGG | - | chr5_4:57734038-57734057 | Msa0859400:intron | 35.0% | |
| AGATGCTGATAAAGAAGCAA+GGG | - | chr5_4:57734039-57734058 | Msa0859400:intron | 35.0% | |
| ACCACTACTTCAAATAGAGT+TGG | - | chr5_4:57734209-57734228 | Msa0859400:intron | 35.0% | |
| ! | TCCAACTCTATTTGAAGTAG+TGG | + | chr5_4:57734213-57734232 | None:intergenic | 35.0% |
| GGAAGAAACTAAGAAGATGT+TGG | - | chr5_4:57734230-57734249 | Msa0859400:intron | 35.0% | |
| !! | TTTTTGGTGAATTCTACTGC+TGG | - | chr5_4:57734339-57734358 | Msa0859400:CDS | 35.0% |
| !! | GAGTGATTTTGTTGATGAGA+TGG | - | chr5_4:57734431-57734450 | Msa0859400:intron | 35.0% |
| GTGCAATTGATTACTGACAA+TGG | - | chr5_4:57734468-57734487 | Msa0859400:intron | 35.0% | |
| ! | AGAACAAACCTCACATCTTT+TGG | - | chr5_4:57734526-57734545 | Msa0859400:intron | 35.0% |
| TACCAATATCTTCCAACATG+AGG | + | chr5_4:57734578-57734597 | None:intergenic | 35.0% | |
| !!! | TGTTGGTTTTCTTCCTCATT+AGG | + | chr5_4:57734680-57734699 | None:intergenic | 35.0% |
| GAAAACCAACAATGTTGAGT+TGG | - | chr5_4:57734689-57734708 | Msa0859400:intron | 35.0% | |
| CCTTTGCAAAGTAAGAAATG+TGG | + | chr5_4:57734742-57734761 | None:intergenic | 35.0% | |
| CCACATTTCTTACTTTGCAA+AGG | - | chr5_4:57734739-57734758 | Msa0859400:intron | 35.0% | |
| ! | TTTAGCTTCCTTATTGCACT+TGG | + | chr5_4:57734823-57734842 | None:intergenic | 35.0% |
| AAGTGCAATAAGGAAGCTAA+AGG | - | chr5_4:57734822-57734841 | Msa0859400:intron | 35.0% | |
| TTGGGATCTTTCTCAATATC+TGG | + | chr5_4:57735149-57735168 | None:intergenic | 35.0% | |
| ATGATGACTATTTGGAGGAA+AGG | - | chr5_4:57735265-57735284 | Msa0859400:intron | 35.0% | |
| GAAATGAACTTCCATTTACC+TGG | + | chr5_4:57735320-57735339 | None:intergenic | 35.0% | |
| CTCAAGTTTACTTCTCTTCT+TGG | + | chr5_4:57735630-57735649 | None:intergenic | 35.0% | |
| TCATACTGAATGGTTAACAG+GGG | - | chr5_4:57735757-57735776 | Msa0859400:intron | 35.0% | |
| ! | TGATGATGATAATTGGTTGG+AGG | - | chr5_4:57736015-57736034 | Msa0859400:CDS | 35.0% |
| AAGACACCAATTGGGAATTT+CGG | - | chr5_4:57733745-57733764 | Msa0859400:CDS | 35.0% | |
| !! | AAAATCAGAAGGTATTGCAG+AGG | - | chr5_4:57733844-57733863 | Msa0859400:intron | 35.0% |
| GAAATAAGGAGAATTCGAAC+TGG | - | chr5_4:57733908-57733927 | Msa0859400:intron | 35.0% | |
| TCCCTTGGATGTAATGTTTA+TGG | - | chr5_4:57733979-57733998 | Msa0859400:intron | 35.0% | |
| CTCCATAAACATTACATCCA+AGG | + | chr5_4:57733984-57734003 | None:intergenic | 35.0% | |
| AAGATGCTGATAAAGAAGCA+AGG | - | chr5_4:57734038-57734057 | Msa0859400:intron | 35.0% | |
| AGATGCTGATAAAGAAGCAA+GGG | - | chr5_4:57734039-57734058 | Msa0859400:intron | 35.0% | |
| ACCACTACTTCAAATAGAGT+TGG | - | chr5_4:57734209-57734228 | Msa0859400:intron | 35.0% | |
| ! | TCCAACTCTATTTGAAGTAG+TGG | + | chr5_4:57734213-57734232 | None:intergenic | 35.0% |
| GGAAGAAACTAAGAAGATGT+TGG | - | chr5_4:57734230-57734249 | Msa0859400:intron | 35.0% | |
| !! | TTTTTGGTGAATTCTACTGC+TGG | - | chr5_4:57734339-57734358 | Msa0859400:CDS | 35.0% |
| !! | GAGTGATTTTGTTGATGAGA+TGG | - | chr5_4:57734431-57734450 | Msa0859400:intron | 35.0% |
| GTGCAATTGATTACTGACAA+TGG | - | chr5_4:57734468-57734487 | Msa0859400:intron | 35.0% | |
| ! | AGAACAAACCTCACATCTTT+TGG | - | chr5_4:57734526-57734545 | Msa0859400:intron | 35.0% |
| TACCAATATCTTCCAACATG+AGG | + | chr5_4:57734578-57734597 | None:intergenic | 35.0% | |
| !!! | TGTTGGTTTTCTTCCTCATT+AGG | + | chr5_4:57734680-57734699 | None:intergenic | 35.0% |
| GAAAACCAACAATGTTGAGT+TGG | - | chr5_4:57734689-57734708 | Msa0859400:intron | 35.0% | |
| CCTTTGCAAAGTAAGAAATG+TGG | + | chr5_4:57734742-57734761 | None:intergenic | 35.0% | |
| CCACATTTCTTACTTTGCAA+AGG | - | chr5_4:57734739-57734758 | Msa0859400:intron | 35.0% | |
| ! | TTTAGCTTCCTTATTGCACT+TGG | + | chr5_4:57734823-57734842 | None:intergenic | 35.0% |
| AAGTGCAATAAGGAAGCTAA+AGG | - | chr5_4:57734822-57734841 | Msa0859400:intron | 35.0% | |
| TTGGGATCTTTCTCAATATC+TGG | + | chr5_4:57735149-57735168 | None:intergenic | 35.0% | |
| ATGATGACTATTTGGAGGAA+AGG | - | chr5_4:57735265-57735284 | Msa0859400:intron | 35.0% | |
| GAAATGAACTTCCATTTACC+TGG | + | chr5_4:57735320-57735339 | None:intergenic | 35.0% | |
| CTCAAGTTTACTTCTCTTCT+TGG | + | chr5_4:57735630-57735649 | None:intergenic | 35.0% | |
| TCATACTGAATGGTTAACAG+GGG | - | chr5_4:57735757-57735776 | Msa0859400:intron | 35.0% | |
| ! | TGATGATGATAATTGGTTGG+AGG | - | chr5_4:57736015-57736034 | Msa0859400:CDS | 35.0% |
| TAGAGCAAGAAGACACCAAT+TGG | - | chr5_4:57733736-57733755 | Msa0859400:CDS | 40.0% | |
| AGAGCAAGAAGACACCAATT+GGG | - | chr5_4:57733737-57733756 | Msa0859400:CDS | 40.0% | |
| AGACACCAATTGGGAATTTC+GGG | - | chr5_4:57733746-57733765 | Msa0859400:CDS | 40.0% | |
| TAAAACACCAGCAGAGGTTA+AGG | - | chr5_4:57733787-57733806 | Msa0859400:CDS | 40.0% | |
| CATCATCATCTAGTAGAGCT+TGG | + | chr5_4:57733871-57733890 | None:intergenic | 40.0% | |
| GCAGACAAAGATGAATCAGA+TGG | + | chr5_4:57733941-57733960 | None:intergenic | 40.0% | |
| AGAAACAGACTACCAGTTCT+AGG | - | chr5_4:57734002-57734021 | Msa0859400:intron | 40.0% | |
| TTGGAAGTTGTTGGAGCTTA+TGG | - | chr5_4:57734148-57734167 | Msa0859400:intron | 40.0% | |
| AGAGTCAAAGACTGGAGAAA+TGG | - | chr5_4:57734395-57734414 | Msa0859400:intron | 40.0% | |
| GGAAGCAACTATGTTTATGC+TGG | - | chr5_4:57734489-57734508 | Msa0859400:intron | 40.0% | |
| GACCTCATGTTGGAAGATAT+TGG | - | chr5_4:57734573-57734592 | Msa0859400:intron | 40.0% | |
| TTAGGCTCAAAGCAAATGTG+TGG | + | chr5_4:57734662-57734681 | None:intergenic | 40.0% | |
| ! | CATTTGCTTTGAGCCTAATG+AGG | - | chr5_4:57734664-57734683 | Msa0859400:intron | 40.0% |
| TGGTTAAACATGGAGTCACA+AGG | - | chr5_4:57734709-57734728 | Msa0859400:intron | 40.0% | |
| GTTGAGTTCCAAGTGCAATA+AGG | - | chr5_4:57734812-57734831 | Msa0859400:intron | 40.0% | |
| GCAATAAGGAAGCTAAAGGT+AGG | - | chr5_4:57734826-57734845 | Msa0859400:intron | 40.0% | |
| ATTCTTAGCACGTCAACAAG+AGG | + | chr5_4:57734921-57734940 | None:intergenic | 40.0% | |
| TCTTGTTGACGTGCTAAGAA+TGG | - | chr5_4:57734920-57734939 | Msa0859400:intron | 40.0% | |
| GCATATATTTCACCCATTGC+AGG | + | chr5_4:57734963-57734982 | None:intergenic | 40.0% | |
| TTGTTCCTTCGCATTATCCA+TGG | + | chr5_4:57734988-57735007 | None:intergenic | 40.0% | |
| CATGCAATGGATGATGAAGT+TGG | + | chr5_4:57735085-57735104 | None:intergenic | 40.0% | |
| AAAGATCCCAAATTGCTGAG+AGG | - | chr5_4:57735158-57735177 | Msa0859400:intron | 40.0% | |
| TGCAAACCTCTCAGCAATTT+GGG | + | chr5_4:57735167-57735186 | None:intergenic | 40.0% | |
| ATGCAAACCTCTCAGCAATT+TGG | + | chr5_4:57735168-57735187 | None:intergenic | 40.0% | |
| ATGTAATGAAGTGGCAGACT+TGG | - | chr5_4:57735211-57735230 | Msa0859400:intron | 40.0% | |
| ! | AGACTTGGTTACAACTCAGT+TGG | - | chr5_4:57735226-57735245 | Msa0859400:intron | 40.0% |
| ! | GACTTGGTTACAACTCAGTT+GGG | - | chr5_4:57735227-57735246 | Msa0859400:intron | 40.0% |
| CAAAACTGTCTCCAGGTAAA+TGG | - | chr5_4:57735306-57735325 | Msa0859400:intron | 40.0% | |
| !! | TGTGTATTTTTGCAGCTGAG+TGG | - | chr5_4:57735392-57735411 | Msa0859400:intron | 40.0% |
| GAATTATGGAGCAGAAACTC+CGG | - | chr5_4:57735420-57735439 | Msa0859400:intron | 40.0% | |
| AACTCCGGATTTGACACTAA+TGG | - | chr5_4:57735435-57735454 | Msa0859400:intron | 40.0% | |
| ATGGCCATTAGTGTCAAATC+CGG | + | chr5_4:57735442-57735461 | None:intergenic | 40.0% | |
| AACCAAACTCAGCACTTTGA+TGG | + | chr5_4:57735461-57735480 | None:intergenic | 40.0% | |
| !! | AGTTTGGTTTGTAGTGCTTC+AGG | - | chr5_4:57735472-57735491 | Msa0859400:intron | 40.0% |
| CATATCGGTCTTTCAAAGCT+TGG | + | chr5_4:57735691-57735710 | None:intergenic | 40.0% | |
| ! | ATCAAGTTGCCAATGCAAGT+GGG | - | chr5_4:57735852-57735871 | Msa0859400:CDS | 40.0% |
| ATGAGCCTATAGTGAACACA+AGG | - | chr5_4:57735879-57735898 | Msa0859400:CDS | 40.0% | |
| TGAGCCTATAGTGAACACAA+GGG | - | chr5_4:57735880-57735899 | Msa0859400:CDS | 40.0% | |
| ! | TGAACACAAGGGCTAGTATT+AGG | - | chr5_4:57735891-57735910 | Msa0859400:CDS | 40.0% |
| ! | GAACACAAGGGCTAGTATTA+GGG | - | chr5_4:57735892-57735911 | Msa0859400:CDS | 40.0% |
| TAGAGCAAGAAGACACCAAT+TGG | - | chr5_4:57733736-57733755 | Msa0859400:CDS | 40.0% | |
| AGAGCAAGAAGACACCAATT+GGG | - | chr5_4:57733737-57733756 | Msa0859400:CDS | 40.0% | |
| AGACACCAATTGGGAATTTC+GGG | - | chr5_4:57733746-57733765 | Msa0859400:CDS | 40.0% | |
| TAAAACACCAGCAGAGGTTA+AGG | - | chr5_4:57733787-57733806 | Msa0859400:CDS | 40.0% | |
| CATCATCATCTAGTAGAGCT+TGG | + | chr5_4:57733871-57733890 | None:intergenic | 40.0% | |
| GCAGACAAAGATGAATCAGA+TGG | + | chr5_4:57733941-57733960 | None:intergenic | 40.0% | |
| AGAAACAGACTACCAGTTCT+AGG | - | chr5_4:57734002-57734021 | Msa0859400:intron | 40.0% | |
| TTGGAAGTTGTTGGAGCTTA+TGG | - | chr5_4:57734148-57734167 | Msa0859400:intron | 40.0% | |
| AGAGTCAAAGACTGGAGAAA+TGG | - | chr5_4:57734395-57734414 | Msa0859400:intron | 40.0% | |
| GGAAGCAACTATGTTTATGC+TGG | - | chr5_4:57734489-57734508 | Msa0859400:intron | 40.0% | |
| GACCTCATGTTGGAAGATAT+TGG | - | chr5_4:57734573-57734592 | Msa0859400:intron | 40.0% | |
| TTAGGCTCAAAGCAAATGTG+TGG | + | chr5_4:57734662-57734681 | None:intergenic | 40.0% | |
| ! | CATTTGCTTTGAGCCTAATG+AGG | - | chr5_4:57734664-57734683 | Msa0859400:intron | 40.0% |
| TGGTTAAACATGGAGTCACA+AGG | - | chr5_4:57734709-57734728 | Msa0859400:intron | 40.0% | |
| GTTGAGTTCCAAGTGCAATA+AGG | - | chr5_4:57734812-57734831 | Msa0859400:intron | 40.0% | |
| GCAATAAGGAAGCTAAAGGT+AGG | - | chr5_4:57734826-57734845 | Msa0859400:intron | 40.0% | |
| ATTCTTAGCACGTCAACAAG+AGG | + | chr5_4:57734921-57734940 | None:intergenic | 40.0% | |
| TCTTGTTGACGTGCTAAGAA+TGG | - | chr5_4:57734920-57734939 | Msa0859400:intron | 40.0% | |
| GCATATATTTCACCCATTGC+AGG | + | chr5_4:57734963-57734982 | None:intergenic | 40.0% | |
| TTGTTCCTTCGCATTATCCA+TGG | + | chr5_4:57734988-57735007 | None:intergenic | 40.0% | |
| CATGCAATGGATGATGAAGT+TGG | + | chr5_4:57735085-57735104 | None:intergenic | 40.0% | |
| AAAGATCCCAAATTGCTGAG+AGG | - | chr5_4:57735158-57735177 | Msa0859400:intron | 40.0% | |
| TGCAAACCTCTCAGCAATTT+GGG | + | chr5_4:57735167-57735186 | None:intergenic | 40.0% | |
| ATGCAAACCTCTCAGCAATT+TGG | + | chr5_4:57735168-57735187 | None:intergenic | 40.0% | |
| ATGTAATGAAGTGGCAGACT+TGG | - | chr5_4:57735211-57735230 | Msa0859400:intron | 40.0% | |
| ! | AGACTTGGTTACAACTCAGT+TGG | - | chr5_4:57735226-57735245 | Msa0859400:intron | 40.0% |
| ! | GACTTGGTTACAACTCAGTT+GGG | - | chr5_4:57735227-57735246 | Msa0859400:intron | 40.0% |
| CAAAACTGTCTCCAGGTAAA+TGG | - | chr5_4:57735306-57735325 | Msa0859400:intron | 40.0% | |
| !! | TGTGTATTTTTGCAGCTGAG+TGG | - | chr5_4:57735392-57735411 | Msa0859400:intron | 40.0% |
| GAATTATGGAGCAGAAACTC+CGG | - | chr5_4:57735420-57735439 | Msa0859400:intron | 40.0% | |
| AACTCCGGATTTGACACTAA+TGG | - | chr5_4:57735435-57735454 | Msa0859400:intron | 40.0% | |
| ATGGCCATTAGTGTCAAATC+CGG | + | chr5_4:57735442-57735461 | None:intergenic | 40.0% | |
| AACCAAACTCAGCACTTTGA+TGG | + | chr5_4:57735461-57735480 | None:intergenic | 40.0% | |
| !! | AGTTTGGTTTGTAGTGCTTC+AGG | - | chr5_4:57735472-57735491 | Msa0859400:intron | 40.0% |
| CATATCGGTCTTTCAAAGCT+TGG | + | chr5_4:57735691-57735710 | None:intergenic | 40.0% | |
| ! | ATCAAGTTGCCAATGCAAGT+GGG | - | chr5_4:57735852-57735871 | Msa0859400:CDS | 40.0% |
| ATGAGCCTATAGTGAACACA+AGG | - | chr5_4:57735879-57735898 | Msa0859400:CDS | 40.0% | |
| TGAGCCTATAGTGAACACAA+GGG | - | chr5_4:57735880-57735899 | Msa0859400:CDS | 40.0% | |
| ! | TGAACACAAGGGCTAGTATT+AGG | - | chr5_4:57735891-57735910 | Msa0859400:CDS | 40.0% |
| ! | GAACACAAGGGCTAGTATTA+GGG | - | chr5_4:57735892-57735911 | Msa0859400:CDS | 40.0% |
| CATCACCCGAAATTCCCAAT+TGG | + | chr5_4:57733754-57733773 | None:intergenic | 45.0% | |
| ATGTCGTAAAACACCAGCAG+AGG | - | chr5_4:57733781-57733800 | Msa0859400:CDS | 45.0% | |
| AACAATGCCTTAACCTCTGC+TGG | + | chr5_4:57733797-57733816 | None:intergenic | 45.0% | |
| GGCATTGTTGCAAGCTGATT+TGG | - | chr5_4:57733808-57733827 | Msa0859400:intron | 45.0% | |
| GGAGAATTCGAACTGGAAAG+AGG | - | chr5_4:57733915-57733934 | Msa0859400:intron | 45.0% | |
| ! | AAGGGACCTTTCTTGGCTTT+GGG | + | chr5_4:57733965-57733984 | None:intergenic | 45.0% |
| TACATCCAAGGGACCTTTCT+TGG | + | chr5_4:57733972-57733991 | None:intergenic | 45.0% | |
| GAAGATGTTGGAGCCTCATT+TGG | - | chr5_4:57734242-57734261 | Msa0859400:intron | 45.0% | |
| TTTACCCTTGCAGCCAAATG+AGG | + | chr5_4:57734258-57734277 | None:intergenic | 45.0% | |
| TTGGCTGCAAGGGTAAACTA+TGG | - | chr5_4:57734261-57734280 | Msa0859400:intron | 45.0% | |
| ! | TTTTCGGTCTGTCCAACCAT+CGG | + | chr5_4:57734301-57734320 | None:intergenic | 45.0% |
| ! | GCTTCTGAAGAGTCAAAGAC+TGG | - | chr5_4:57734387-57734406 | Msa0859400:intron | 45.0% |
| TGAGATGGGTGAGCAAAATG+TGG | - | chr5_4:57734446-57734465 | Msa0859400:intron | 45.0% | |
| CATGGAGTCCAAAAGATGTG+AGG | + | chr5_4:57734537-57734556 | None:intergenic | 45.0% | |
| ACACTGCATAGACCTCATGT+TGG | - | chr5_4:57734563-57734582 | Msa0859400:intron | 45.0% | |
| !! | CAAAAGGGGTGTTCTCTTGT+AGG | - | chr5_4:57734624-57734643 | Msa0859400:intron | 45.0% |
| TAAGGAAGCTAAAGGTAGGC+AGG | - | chr5_4:57734830-57734849 | Msa0859400:intron | 45.0% | |
| ! | GTGCACTTCTGCCATCATTT+TGG | - | chr5_4:57734862-57734881 | Msa0859400:intron | 45.0% |
| ACTCCACACTCTTAAGTCCA+TGG | - | chr5_4:57734893-57734912 | Msa0859400:intron | 45.0% | |
| GGGTGAAATATATGCAGCCA+TGG | - | chr5_4:57734968-57734987 | Msa0859400:CDS | 45.0% | |
| TAGTAACCAGCAGCATGCAA+TGG | + | chr5_4:57735098-57735117 | None:intergenic | 45.0% | |
| CAACTCAGTTGGGACAATAC+AGG | - | chr5_4:57735237-57735256 | Msa0859400:intron | 45.0% | |
| AGGCGTGCATGATGACTATT+TGG | - | chr5_4:57735257-57735276 | Msa0859400:intron | 45.0% | |
| CGTGCATGATGACTATTTGG+AGG | - | chr5_4:57735260-57735279 | Msa0859400:intron | 45.0% | |
| !! | GTATTTTTGCAGCTGAGTGG+TGG | - | chr5_4:57735395-57735414 | Msa0859400:intron | 45.0% |
| !! | GCTGAGTGGTGGATGAATTA+TGG | - | chr5_4:57735406-57735425 | Msa0859400:intron | 45.0% |
| GCATCAGAAGTTGCAAGAGT+TGG | - | chr5_4:57735649-57735668 | Msa0859400:intron | 45.0% | |
| TGAATGGTTAACAGGGGAGA+TGG | - | chr5_4:57735763-57735782 | Msa0859400:intron | 45.0% | |
| ! | GATCAAGTTGCCAATGCAAG+TGG | - | chr5_4:57735851-57735870 | Msa0859400:CDS | 45.0% |
| ! | TCAAGTTGCCAATGCAAGTG+GGG | - | chr5_4:57735853-57735872 | Msa0859400:CDS | 45.0% |
| CTCATTAACCCCACTTGCAT+TGG | + | chr5_4:57735864-57735883 | None:intergenic | 45.0% | |
| CTAGCCCTTGTGTTCACTAT+AGG | + | chr5_4:57735887-57735906 | None:intergenic | 45.0% | |
| TATTAGGGCAGAACGAGCAA+AGG | - | chr5_4:57735907-57735926 | Msa0859400:CDS | 45.0% | |
| CATCACCCGAAATTCCCAAT+TGG | + | chr5_4:57733754-57733773 | None:intergenic | 45.0% | |
| ATGTCGTAAAACACCAGCAG+AGG | - | chr5_4:57733781-57733800 | Msa0859400:CDS | 45.0% | |
| AACAATGCCTTAACCTCTGC+TGG | + | chr5_4:57733797-57733816 | None:intergenic | 45.0% | |
| GGCATTGTTGCAAGCTGATT+TGG | - | chr5_4:57733808-57733827 | Msa0859400:intron | 45.0% | |
| GGAGAATTCGAACTGGAAAG+AGG | - | chr5_4:57733915-57733934 | Msa0859400:intron | 45.0% | |
| ! | AAGGGACCTTTCTTGGCTTT+GGG | + | chr5_4:57733965-57733984 | None:intergenic | 45.0% |
| TACATCCAAGGGACCTTTCT+TGG | + | chr5_4:57733972-57733991 | None:intergenic | 45.0% | |
| GAAGATGTTGGAGCCTCATT+TGG | - | chr5_4:57734242-57734261 | Msa0859400:intron | 45.0% | |
| TTTACCCTTGCAGCCAAATG+AGG | + | chr5_4:57734258-57734277 | None:intergenic | 45.0% | |
| TTGGCTGCAAGGGTAAACTA+TGG | - | chr5_4:57734261-57734280 | Msa0859400:intron | 45.0% | |
| ! | TTTTCGGTCTGTCCAACCAT+CGG | + | chr5_4:57734301-57734320 | None:intergenic | 45.0% |
| ! | GCTTCTGAAGAGTCAAAGAC+TGG | - | chr5_4:57734387-57734406 | Msa0859400:intron | 45.0% |
| TGAGATGGGTGAGCAAAATG+TGG | - | chr5_4:57734446-57734465 | Msa0859400:intron | 45.0% | |
| CATGGAGTCCAAAAGATGTG+AGG | + | chr5_4:57734537-57734556 | None:intergenic | 45.0% | |
| ACACTGCATAGACCTCATGT+TGG | - | chr5_4:57734563-57734582 | Msa0859400:intron | 45.0% | |
| !! | CAAAAGGGGTGTTCTCTTGT+AGG | - | chr5_4:57734624-57734643 | Msa0859400:intron | 45.0% |
| TAAGGAAGCTAAAGGTAGGC+AGG | - | chr5_4:57734830-57734849 | Msa0859400:intron | 45.0% | |
| ! | GTGCACTTCTGCCATCATTT+TGG | - | chr5_4:57734862-57734881 | Msa0859400:intron | 45.0% |
| ACTCCACACTCTTAAGTCCA+TGG | - | chr5_4:57734893-57734912 | Msa0859400:intron | 45.0% | |
| GGGTGAAATATATGCAGCCA+TGG | - | chr5_4:57734968-57734987 | Msa0859400:CDS | 45.0% | |
| TAGTAACCAGCAGCATGCAA+TGG | + | chr5_4:57735098-57735117 | None:intergenic | 45.0% | |
| CAACTCAGTTGGGACAATAC+AGG | - | chr5_4:57735237-57735256 | Msa0859400:intron | 45.0% | |
| AGGCGTGCATGATGACTATT+TGG | - | chr5_4:57735257-57735276 | Msa0859400:intron | 45.0% | |
| CGTGCATGATGACTATTTGG+AGG | - | chr5_4:57735260-57735279 | Msa0859400:intron | 45.0% | |
| !! | GTATTTTTGCAGCTGAGTGG+TGG | - | chr5_4:57735395-57735414 | Msa0859400:intron | 45.0% |
| !! | GCTGAGTGGTGGATGAATTA+TGG | - | chr5_4:57735406-57735425 | Msa0859400:intron | 45.0% |
| GCATCAGAAGTTGCAAGAGT+TGG | - | chr5_4:57735649-57735668 | Msa0859400:intron | 45.0% | |
| TGAATGGTTAACAGGGGAGA+TGG | - | chr5_4:57735763-57735782 | Msa0859400:intron | 45.0% | |
| ! | GATCAAGTTGCCAATGCAAG+TGG | - | chr5_4:57735851-57735870 | Msa0859400:CDS | 45.0% |
| ! | TCAAGTTGCCAATGCAAGTG+GGG | - | chr5_4:57735853-57735872 | Msa0859400:CDS | 45.0% |
| CTCATTAACCCCACTTGCAT+TGG | + | chr5_4:57735864-57735883 | None:intergenic | 45.0% | |
| CTAGCCCTTGTGTTCACTAT+AGG | + | chr5_4:57735887-57735906 | None:intergenic | 45.0% | |
| TATTAGGGCAGAACGAGCAA+AGG | - | chr5_4:57735907-57735926 | Msa0859400:CDS | 45.0% | |
| TCTGCTCCCAAAGCCAAGAA+AGG | - | chr5_4:57733956-57733975 | Msa0859400:intron | 50.0% | |
| CAAGGGACCTTTCTTGGCTT+TGG | + | chr5_4:57733966-57733985 | None:intergenic | 50.0% | |
| CAAAGCCAAGAAAGGTCCCT+TGG | - | chr5_4:57733964-57733983 | Msa0859400:intron | 50.0% | |
| GGATGCTCGATTATGTCCGA+TGG | - | chr5_4:57734282-57734301 | Msa0859400:CDS | 50.0% | |
| GCTCGATTATGTCCGATGGT+TGG | - | chr5_4:57734286-57734305 | Msa0859400:CDS | 50.0% | |
| GATGGTTGGACAGACCGAAA+AGG | - | chr5_4:57734300-57734319 | Msa0859400:CDS | 50.0% | |
| TCTATGCAGTGTGCAGCACA+TGG | + | chr5_4:57734555-57734574 | None:intergenic | 50.0% | |
| GTGCCATGGACTTAAGAGTG+TGG | + | chr5_4:57734899-57734918 | None:intergenic | 50.0% | |
| TGCAGCCATGGATAATGCGA+AGG | - | chr5_4:57734980-57734999 | Msa0859400:CDS | 50.0% | |
| CATCATCCATTGCATGCTGC+TGG | - | chr5_4:57735089-57735108 | Msa0859400:CDS | 50.0% | |
| TTGGAGGAAAGGCAGCAGTA+AGG | - | chr5_4:57735276-57735295 | Msa0859400:intron | 50.0% | |
| !! | GGCCATCAAAGTGCTGAGTT+TGG | - | chr5_4:57735456-57735475 | Msa0859400:intron | 50.0% |
| AACAGGGGAGATGGAAGAGA+TGG | - | chr5_4:57735772-57735791 | Msa0859400:intron | 50.0% | |
| ACAGGGGAGATGGAAGAGAT+GGG | - | chr5_4:57735773-57735792 | Msa0859400:intron | 50.0% | |
| ATGGAAGAGATGGGAGAGGA+TGG | - | chr5_4:57735782-57735801 | Msa0859400:intron | 50.0% | |
| TCTGCTCCCAAAGCCAAGAA+AGG | - | chr5_4:57733956-57733975 | Msa0859400:intron | 50.0% | |
| CAAGGGACCTTTCTTGGCTT+TGG | + | chr5_4:57733966-57733985 | None:intergenic | 50.0% | |
| CAAAGCCAAGAAAGGTCCCT+TGG | - | chr5_4:57733964-57733983 | Msa0859400:intron | 50.0% | |
| GGATGCTCGATTATGTCCGA+TGG | - | chr5_4:57734282-57734301 | Msa0859400:CDS | 50.0% | |
| GCTCGATTATGTCCGATGGT+TGG | - | chr5_4:57734286-57734305 | Msa0859400:CDS | 50.0% | |
| GATGGTTGGACAGACCGAAA+AGG | - | chr5_4:57734300-57734319 | Msa0859400:CDS | 50.0% | |
| TCTATGCAGTGTGCAGCACA+TGG | + | chr5_4:57734555-57734574 | None:intergenic | 50.0% | |
| GTGCCATGGACTTAAGAGTG+TGG | + | chr5_4:57734899-57734918 | None:intergenic | 50.0% | |
| TGCAGCCATGGATAATGCGA+AGG | - | chr5_4:57734980-57734999 | Msa0859400:CDS | 50.0% | |
| CATCATCCATTGCATGCTGC+TGG | - | chr5_4:57735089-57735108 | Msa0859400:CDS | 50.0% | |
| TTGGAGGAAAGGCAGCAGTA+AGG | - | chr5_4:57735276-57735295 | Msa0859400:intron | 50.0% | |
| !! | GGCCATCAAAGTGCTGAGTT+TGG | - | chr5_4:57735456-57735475 | Msa0859400:intron | 50.0% |
| AACAGGGGAGATGGAAGAGA+TGG | - | chr5_4:57735772-57735791 | Msa0859400:intron | 50.0% | |
| ACAGGGGAGATGGAAGAGAT+GGG | - | chr5_4:57735773-57735792 | Msa0859400:intron | 50.0% | |
| ATGGAAGAGATGGGAGAGGA+TGG | - | chr5_4:57735782-57735801 | Msa0859400:intron | 50.0% | |
| TGGAGCCTCATTTGGCTGCA+AGG | - | chr5_4:57734250-57734269 | Msa0859400:intron | 55.0% | |
| GGAGCCTCATTTGGCTGCAA+GGG | - | chr5_4:57734251-57734270 | Msa0859400:intron | 55.0% | |
| !! | CACGTCAACAAGAGGTGCCA+TGG | + | chr5_4:57734913-57734932 | None:intergenic | 55.0% |
| GAAAGGCAGCAGTAAGGCTG+CGG | - | chr5_4:57735282-57735301 | Msa0859400:intron | 55.0% | |
| CTGCGGTCAAAACTGTCTCC+AGG | - | chr5_4:57735299-57735318 | Msa0859400:intron | 55.0% | |
| CTTCAGGATGTGAGCGCAAC+TGG | - | chr5_4:57735488-57735507 | Msa0859400:intron | 55.0% | |
| GGAGATGGAAGAGATGGGAG+AGG | - | chr5_4:57735778-57735797 | Msa0859400:intron | 55.0% | |
| TGGAGCCTCATTTGGCTGCA+AGG | - | chr5_4:57734250-57734269 | Msa0859400:intron | 55.0% | |
| GGAGCCTCATTTGGCTGCAA+GGG | - | chr5_4:57734251-57734270 | Msa0859400:intron | 55.0% | |
| !! | CACGTCAACAAGAGGTGCCA+TGG | + | chr5_4:57734913-57734932 | None:intergenic | 55.0% |
| GAAAGGCAGCAGTAAGGCTG+CGG | - | chr5_4:57735282-57735301 | Msa0859400:intron | 55.0% | |
| CTGCGGTCAAAACTGTCTCC+AGG | - | chr5_4:57735299-57735318 | Msa0859400:intron | 55.0% | |
| CTTCAGGATGTGAGCGCAAC+TGG | - | chr5_4:57735488-57735507 | Msa0859400:intron | 55.0% | |
| GGAGATGGAAGAGATGGGAG+AGG | - | chr5_4:57735778-57735797 | Msa0859400:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 57733716 | 57736090 | 57733716 | ID=Msa0859400;Name=Msa0859400 |
| chr5_4 | mRNA | 57733716 | 57736090 | 57733716 | ID=Msa0859400-mRNA-1;Parent=Msa0859400;Name=Msa0859400-mRNA-1;_AED=0.30;_eAED=0.31;_QI=0|0|0|0.5|0.4|0.5|6|0|221 |
| chr5_4 | exon | 57735952 | 57736090 | 57735952 | ID=Msa0859400-mRNA-1:exon:17622;Parent=Msa0859400-mRNA-1 |
| chr5_4 | exon | 57735813 | 57735942 | 57735813 | ID=Msa0859400-mRNA-1:exon:17621;Parent=Msa0859400-mRNA-1 |
| chr5_4 | exon | 57734963 | 57735129 | 57734963 | ID=Msa0859400-mRNA-1:exon:17620;Parent=Msa0859400-mRNA-1 |
| chr5_4 | exon | 57734281 | 57734399 | 57734281 | ID=Msa0859400-mRNA-1:exon:17619;Parent=Msa0859400-mRNA-1 |
| chr5_4 | exon | 57734168 | 57734186 | 57734168 | ID=Msa0859400-mRNA-1:exon:17618;Parent=Msa0859400-mRNA-1 |
| chr5_4 | exon | 57733716 | 57733807 | 57733716 | ID=Msa0859400-mRNA-1:exon:17617;Parent=Msa0859400-mRNA-1 |
| chr5_4 | CDS | 57735952 | 57736090 | 57735952 | ID=Msa0859400-mRNA-1:cds;Parent=Msa0859400-mRNA-1 |
| chr5_4 | CDS | 57735813 | 57735942 | 57735813 | ID=Msa0859400-mRNA-1:cds;Parent=Msa0859400-mRNA-1 |
| chr5_4 | CDS | 57734963 | 57735129 | 57734963 | ID=Msa0859400-mRNA-1:cds;Parent=Msa0859400-mRNA-1 |
| chr5_4 | CDS | 57734281 | 57734399 | 57734281 | ID=Msa0859400-mRNA-1:cds;Parent=Msa0859400-mRNA-1 |
| chr5_4 | CDS | 57734168 | 57734186 | 57734168 | ID=Msa0859400-mRNA-1:cds;Parent=Msa0859400-mRNA-1 |
| chr5_4 | CDS | 57733716 | 57733807 | 57733716 | ID=Msa0859400-mRNA-1:cds;Parent=Msa0859400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
