AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0931520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0931520 MtrunA17_Chr4g0013301 84.788 401 20 3 1 398 1 363 0.0 634
Msa0931520 MtrunA17_Chr2g0308681 43.678 261 117 7 1 260 1 232 5.88e-55 183
Msa0931520 MtrunA17_Chr7g0258821 34.699 366 179 12 55 380 93 438 7.10e-48 171
Msa0931520 MtrunA17_Chr1g0175641 56.818 88 36 2 127 213 71 157 4.81e-29 112
Msa0931520 MtrunA17_Chr1g0175871 45.926 135 48 7 125 239 45 174 4.98e-28 110
Msa0931520 MtrunA17_Chr1g0175571 52.427 103 45 3 117 218 109 208 5.39e-28 111
Msa0931520 MtrunA17_Chr2g0324291 46.667 90 44 1 130 215 28 117 6.54e-25 100
Msa0931520 MtrunA17_Chr2g0324281 47.727 88 38 2 127 214 15 94 2.23e-23 97.8
Msa0931520 MtrunA17_Chr5g0403521 45.977 87 46 1 132 218 35 120 6.60e-23 97.4
Msa0931520 MtrunA17_Chr1g0154561 45.055 91 48 2 128 218 29 117 9.30e-23 96.7
Msa0931520 MtrunA17_Chr4g0021321 46.392 97 42 3 127 215 41 135 1.49e-21 93.6
Msa0931520 MtrunA17_Chr2g0324261 39.496 119 58 3 103 214 18 129 5.52e-21 92.0
Msa0931520 MtrunA17_Chr2g0282171 39.091 110 50 3 116 213 11 115 1.52e-20 90.5
Msa0931520 MtrunA17_Chr4g0047371 39.423 104 54 2 125 219 25 128 3.29e-20 88.6
Msa0931520 MtrunA17_Chr8g0360011 43.182 88 44 1 130 211 33 120 3.99e-20 89.7
Msa0931520 MtrunA17_Chr4g0047381 35.514 107 59 2 123 219 22 128 2.41e-19 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0931520 AT2G44410.1 43.462 260 104 8 1 245 10 241 9.82e-54 186
Msa0931520 AT3G58030.4 50.365 137 57 6 113 244 114 244 3.69e-35 136
Msa0931520 AT3G58030.2 50.365 137 57 6 113 244 114 244 3.69e-35 136
Msa0931520 AT3G58030.1 50.365 137 57 6 113 244 114 244 3.69e-35 136
Msa0931520 AT3G58030.3 50.365 137 57 6 113 244 114 244 3.69e-35 136
Msa0931520 AT1G74990.1 44.860 107 58 1 125 231 10 115 1.07e-28 110
Msa0931520 AT2G42030.1 38.272 162 88 3 93 250 100 253 1.20e-28 117
Msa0931520 AT1G19310.1 48.276 87 44 1 132 218 21 106 7.13e-24 100
Msa0931520 AT4G28270.1 46.000 100 34 3 128 214 15 107 1.06e-22 95.9
Msa0931520 AT2G23780.3 45.977 87 46 1 132 218 26 111 1.39e-22 96.7
Msa0931520 AT2G23780.2 45.977 87 46 1 132 218 26 111 1.39e-22 96.7
Msa0931520 AT2G23780.1 45.977 87 46 1 132 218 26 111 1.39e-22 96.7
Msa0931520 AT4G27470.1 35.200 125 64 3 132 243 42 162 6.04e-19 86.7
Msa0931520 AT4G03510.3 43.956 91 38 3 132 214 46 131 2.30e-18 85.1
Msa0931520 AT4G03510.1 43.956 91 38 3 132 214 46 131 2.30e-18 85.1
Msa0931520 AT4G03510.2 43.956 91 38 3 132 214 46 131 2.30e-18 85.1
Msa0931520 AT4G03510.4 43.956 91 38 3 132 214 46 131 2.30e-18 85.1

Find 121 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGGTATTATTCCAATTTA+TGG 0.104536 6_2:-81043659 Msa0931520:CDS
CTTATTCTCATAAGCTCTTT+TGG 0.191630 6_2:-81041143 Msa0931520:three_prime_UTR
CCATTTCCATGTCCATAAAT+TGG 0.194274 6_2:+81043647 None:intergenic
TTATCAACATTCCTACTTAA+AGG 0.205288 6_2:+81043080 None:intergenic
CTCTCAGGTGTGGTACTATT+AGG 0.243365 6_2:+81043434 None:intergenic
GTCGATAATGTTGCTGTTAT+AGG 0.252556 6_2:-81041562 Msa0931520:CDS
TACAACTGATAGAAATTTAC+AGG 0.258068 6_2:-81043030 Msa0931520:CDS
TGTAAGGATATTTGCATGTT+TGG 0.275252 6_2:-81041263 Msa0931520:three_prime_UTR
CATAACCGAATTGGTGGATT+TGG 0.278139 6_2:-81043479 Msa0931520:CDS
CTTCTGTGTCTCTGTTAAAT+AGG 0.287511 6_2:-81041588 Msa0931520:CDS
TGACTGTTTGATATAACTTA+TGG 0.289048 6_2:-81041201 Msa0931520:three_prime_UTR
TCTCAGGTGTGGTACTATTA+GGG 0.289538 6_2:+81043435 None:intergenic
GTTGATAATGTTGCTGTTGC+AGG 0.300831 6_2:-81043065 Msa0931520:CDS
CTTCTATTGTCCAAAGTATT+CGG 0.320027 6_2:-81043508 Msa0931520:CDS
CTTTGATTGTAATATTTGTT+TGG 0.349272 6_2:-81043807 Msa0931520:CDS
TGATTTGAATCAGGAGCCTT+TGG 0.350787 6_2:-81044191 Msa0931520:CDS
TATGAAACCGCCGAATACTT+TGG 0.373232 6_2:+81043498 None:intergenic
TTCGAGAGCGAGGCAGCGTC+GGG 0.374026 6_2:-81044062 Msa0931520:CDS
ATTCAGATAACCAATGTTAC+AGG 0.375175 6_2:-81044016 Msa0931520:CDS
TTCTGCTGAAAGATTAGTTC+AGG 0.376998 6_2:-81043273 Msa0931520:CDS
CGGCGGTTTCATAACCGAAT+TGG 0.383576 6_2:-81043488 Msa0931520:CDS
CCAATTTATGGACATGGAAA+TGG 0.384021 6_2:-81043647 Msa0931520:CDS
ACATTCCTTTGCTTTCGAAT+AGG 0.388726 6_2:+81043709 None:intergenic
TATGGAGCTTGATTTGAATC+AGG 0.400185 6_2:-81044200 Msa0931520:CDS
CTCTCGAAGTAATTGCTTCA+AGG 0.402049 6_2:+81044077 None:intergenic
GGAGCGGAACGATGCTGATC+AGG 0.409682 6_2:-81043948 Msa0931520:CDS
GACCATTGATATATGATTCA+AGG 0.415979 6_2:+81043249 None:intergenic
TGAACATGGTGGTTCTCAAC+AGG 0.416867 6_2:-81043366 Msa0931520:CDS
AGCTGCTGCAGCTACAGAAT+TGG 0.416919 6_2:+81043112 None:intergenic
TGCAGTTTCTCCTGTAACAT+TGG 0.419434 6_2:+81044006 None:intergenic
CTTCTCTTTCTCCTTTAAGT+AGG 0.422331 6_2:-81043091 Msa0931520:CDS
CTTCTTCTACCGTTTGATGA+AGG 0.424965 6_2:+81041490 None:intergenic
GTGGTTCTCAACAGGTTTCA+AGG 0.428291 6_2:-81043358 Msa0931520:CDS
ATCTGAATCCGAGAGGAGTT+CGG 0.434023 6_2:+81044031 None:intergenic
GTTACCTCCCCTTTACAAAC+AGG 0.438464 6_2:+81043686 None:intergenic
TTGCTTCAAGGTGTGTGATT+CGG 0.441946 6_2:+81044089 None:intergenic
GTCTGCGTGCGAGACTGAAC+AGG 0.444476 6_2:+81043398 None:intergenic
GGGATGGAAGAGATTGATAA+TGG 0.448635 6_2:-81043857 Msa0931520:CDS
AGGAATGTCCTGTTTGTAAA+GGG 0.451056 6_2:-81043694 Msa0931520:CDS
AAATGAACGCACTGATGTAC+TGG 0.451580 6_2:+81044159 None:intergenic
AGTCATTTCGATATTCTTGT+TGG 0.454214 6_2:+81041436 None:intergenic
TGACCACAACATGTCAAAAC+AGG 0.454953 6_2:+81043770 None:intergenic
TATATCAATGGTCACAATAC+AGG 0.455204 6_2:-81043239 Msa0931520:CDS
TAGAAGAAGAAGATGCTCCT+TGG 0.455800 6_2:+81043525 None:intergenic
TAAAGGGGAGGTAACTGAAT+CGG 0.458742 6_2:-81043678 Msa0931520:CDS
GGCAAACCATTGTTTCTCTC+AGG 0.458959 6_2:+81043419 None:intergenic
TTCTTCTACCGTTTGATGAA+GGG 0.463767 6_2:+81041491 None:intergenic
CTCTCAACTCTAGGTGCCTT+AGG 0.467180 6_2:+81043569 None:intergenic
TATGTTGGAAGAACTTGAAT+CGG 0.467329 6_2:-81044131 Msa0931520:CDS
AGAAGAAGAAGATGCTCCTT+GGG 0.474601 6_2:+81043526 None:intergenic
GGTAAAGTGGAGGAGAGTAG+TGG 0.474653 6_2:-81043836 Msa0931520:CDS
CGGTTTCATAACCGAATTGG+TGG 0.476371 6_2:-81043485 Msa0931520:CDS
AATCTTATTCAATAGATGTA+AGG 0.478243 6_2:-81041279 Msa0931520:three_prime_UTR
GCTCTCCAAATCCACCAATT+CGG 0.478712 6_2:+81043474 None:intergenic
AACGATGCTGATCAGGATGA+AGG 0.485394 6_2:-81043941 Msa0931520:CDS
TCAAACGGTAGAAGAAGAAA+TGG 0.486110 6_2:-81041484 Msa0931520:CDS
GGTTGCCGCCGAACTCCTCT+CGG 0.492462 6_2:-81044039 Msa0931520:CDS
CTTGACCACGACTCTCTGAC+TGG 0.492720 6_2:+81043150 None:intergenic
AGAGATTGATAATGGTAAAG+TGG 0.493881 6_2:-81043849 Msa0931520:CDS
CTTCTACCTCTAGATGAAGA+AGG 0.495035 6_2:+81042993 None:intergenic
CATTTGATAGCAAAAGCTCT+AGG 0.498838 6_2:-81043878 Msa0931520:CDS
GAGAGTTCCTCCTCGACCTA+AGG 0.502667 6_2:-81043585 Msa0931520:CDS
AAGGAATGTCCTGTTTGTAA+AGG 0.503450 6_2:-81043695 Msa0931520:CDS
AACAGCATTAAATTCTGCAA+TGG 0.508273 6_2:-81043297 Msa0931520:CDS
CTTCGAGAGCGAGGCAGCGT+CGG 0.509799 6_2:-81044063 Msa0931520:CDS
CTGTTAGACCCTTCATCAAA+CGG 0.512392 6_2:-81041499 Msa0931520:CDS
GACCTTGAATCATATATCAA+TGG 0.517570 6_2:-81043251 Msa0931520:CDS
AAAGGGGAGGTAACTGAATC+GGG 0.517863 6_2:-81043677 Msa0931520:CDS
GCGAAGAACGGAGGGAGGAG+CGG 0.521333 6_2:-81043964 Msa0931520:CDS
ATTATTCCAATTTATGGACA+TGG 0.526065 6_2:-81043653 Msa0931520:CDS
GTAAAGTGGAGGAGAGTAGT+GGG 0.535109 6_2:-81043835 Msa0931520:CDS
GCAACAGCAGGTGATGTTCA+AGG 0.537071 6_2:-81043986 Msa0931520:CDS
TCGAGGAGGAACTCTCAAAC+CGG 0.538001 6_2:+81043592 None:intergenic
CTAGACCCTTCTTCATCTAG+AGG 0.541703 6_2:-81042999 Msa0931520:intron
GGGATAGTTGAAAGTGTGAA+AGG 0.543494 6_2:-81043920 Msa0931520:CDS
ACTCTAGGTGCCTTAGGTCG+AGG 0.546117 6_2:+81043575 None:intergenic
CTGATGGAAATGAAAGAAGC+CGG 0.547924 6_2:-81043611 Msa0931520:CDS
GTTGAATTTCTAGTAACAGT+AGG 0.548372 6_2:+81043194 None:intergenic
GAATTTCTAGTAACAGTAGG+AGG 0.555492 6_2:+81043197 None:intergenic
TGTCTAATACTCTCAACTCT+AGG 0.555708 6_2:+81043560 None:intergenic
GGATAGTTGAAAGTGTGAAA+GGG 0.557671 6_2:-81043919 Msa0931520:CDS
GTTTCAAGGTTGCTAGAGCA+AGG 0.560862 6_2:-81043344 Msa0931520:CDS
GATAGTTGAAAGTGTGAAAG+GGG 0.566431 6_2:-81043918 Msa0931520:CDS
GCGTTCATTTGATTCTATGT+TGG 0.571256 6_2:-81044146 Msa0931520:CDS
ACAGGAGAAACTGCAACAGC+AGG 0.572374 6_2:-81043998 Msa0931520:CDS
GTGATGTTCAAGGCGAAGAA+CGG 0.575661 6_2:-81043976 Msa0931520:CDS
CGAGAGCGAGGCAGCGTCGG+GGG 0.578008 6_2:-81044060 Msa0931520:CDS
TGGCGGCGGTGATTGTCTGA+TGG 0.578360 6_2:-81043627 Msa0931520:CDS
TAGTTGAAAGTGTGAAAGGG+GGG 0.581279 6_2:-81043916 Msa0931520:CDS
ATTTGATAGCAAAAGCTCTA+GGG 0.584132 6_2:-81043877 Msa0931520:CDS
TTCTACCTCTAGATGAAGAA+GGG 0.590516 6_2:+81042994 None:intergenic
GATTGATAATGGTAAAGTGG+AGG 0.594410 6_2:-81043846 Msa0931520:CDS
ACCATTGTTTCTCTCAGGTG+TGG 0.595758 6_2:+81043424 None:intergenic
ACGATGCTGATCAGGATGAA+GGG 0.597581 6_2:-81043940 Msa0931520:CDS
TATGGACATGGAAATGGCGG+CGG 0.603447 6_2:-81043641 Msa0931520:CDS
CAGACAGACAACAATGAACA+TGG 0.607844 6_2:-81043380 Msa0931520:CDS
GATAGCAAAAGCTCTAGGGA+TGG 0.616270 6_2:-81043873 Msa0931520:CDS
ATGTTCAAGGCGAAGAACGG+AGG 0.619140 6_2:-81043973 Msa0931520:CDS
AGACAGAAGTTGCTAACCCA+AGG 0.623915 6_2:-81043542 Msa0931520:CDS
TCGAGAGCGAGGCAGCGTCG+GGG 0.626763 6_2:-81044061 Msa0931520:CDS
TGTTCAAGGCGAAGAACGGA+GGG 0.630328 6_2:-81043972 Msa0931520:CDS
ATAGTTGAAAGTGTGAAAGG+GGG 0.631256 6_2:-81043917 Msa0931520:CDS
AAGCAATTACTTCGAGAGCG+AGG 0.636181 6_2:-81044072 Msa0931520:CDS
TGCAGCTGTAGAATCAGTCA+CGG 0.640246 6_2:+81041615 None:intergenic
ACCACACCTGAGAGAAACAA+TGG 0.640564 6_2:-81043425 Msa0931520:CDS
ATCAATGGTCACAATACAGG+AGG 0.640899 6_2:-81043236 Msa0931520:CDS
ATGTCCTGTTTGTAAAGGGG+AGG 0.641102 6_2:-81043690 Msa0931520:CDS
GTATGCCTATTCGAAAGCAA+AGG 0.642527 6_2:-81043714 Msa0931520:CDS
ATTTATGGACATGGAAATGG+CGG 0.647005 6_2:-81043644 Msa0931520:CDS
GGAATGTCCTGTTTGTAAAG+GGG 0.658869 6_2:-81043693 Msa0931520:CDS
CTATTGTCCAAAGTATTCGG+CGG 0.665724 6_2:-81043505 Msa0931520:CDS
GTACTGGTTTGATGATCCAA+AGG 0.668438 6_2:+81044175 None:intergenic
TCAAGGCGAAGAACGGAGGG+AGG 0.671112 6_2:-81043969 Msa0931520:CDS
AGGCTCAGAAATTCAGACAA+CGG 0.673554 6_2:-81041542 Msa0931520:CDS
CTAGGTGCCTTAGGTCGAGG+AGG 0.679868 6_2:+81043578 None:intergenic
TACGATAACTGATAGAAACA+CGG 0.689120 6_2:+81043734 None:intergenic
ACAAACCAGTCAGAGAGTCG+TGG 0.695607 6_2:-81043155 Msa0931520:CDS
AGTATGCATGCAAGTAAACG+AGG 0.704101 6_2:+81041371 None:intergenic
TGAATCCGAGAGGAGTTCGG+CGG 0.720440 6_2:+81044034 None:intergenic
ATTGGTTATCTGAATCCGAG+AGG 0.732391 6_2:+81044024 None:intergenic
ACAGACAACAATGAACATGG+TGG 0.773237 6_2:-81043377 Msa0931520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAAATTAATTTAAAATGA+AGG - chr6_2:81043495-81043514 Msa0931520:CDS 10.0%
!! CTTTGATTGTAATATTTGTT+TGG - chr6_2:81041498-81041517 Msa0931520:CDS 20.0%
!! AACATATTTGATATTTGTCT+TGG + chr6_2:81042501-81042520 None:intergenic 20.0%
!!! AGTTTTATTCAATAGATGTA+AGG - chr6_2:81042548-81042567 Msa0931520:intron 20.0%
!! TTAAACTGTTTATCCAAATA+GGG - chr6_2:81042807-81042826 Msa0931520:intron 20.0%
!! TCTAATAAAGAACATGTAAA+GGG + chr6_2:81042917-81042936 None:intergenic 20.0%
!! ATCTAATAAAGAACATGTAA+AGG + chr6_2:81042918-81042937 None:intergenic 20.0%
!!! TCTTTTGAATATCTAGTTTT+TGG - chr6_2:81042947-81042966 Msa0931520:intron 20.0%
!!! TATCATGATTGTTTCTTATA+AGG - chr6_2:81043150-81043169 Msa0931520:CDS 20.0%
!!! AGTTTGTTGTATATATCATA+TGG + chr6_2:81043208-81043227 None:intergenic 20.0%
!! AATCTTATTCAATAGATGTA+AGG - chr6_2:81044026-81044045 Msa0931520:CDS 20.0%
! ATTATTCCAATTTATGGACA+TGG - chr6_2:81041652-81041671 Msa0931520:intron 25.0%
! TTATCAACATTCCTACTTAA+AGG + chr6_2:81042228-81042247 None:intergenic 25.0%
! TACAACTGATAGAAATTTAC+AGG - chr6_2:81042275-81042294 Msa0931520:intron 25.0%
!! ACTTATTTGAGATTATCTAC+TGG - chr6_2:81042591-81042610 Msa0931520:intron 25.0%
! GTTAAACTGTTTATCCAAAT+AGG - chr6_2:81042806-81042825 Msa0931520:intron 25.0%
! GTTCTTTATTAGATCTATCT+TGG - chr6_2:81042924-81042943 Msa0931520:intron 25.0%
!!! TATCTAGTTTTTGGATCTTT+TGG - chr6_2:81042956-81042975 Msa0931520:intron 25.0%
!! CATAAACTATAGAGTATTAG+AGG + chr6_2:81043076-81043095 None:intergenic 25.0%
! ACTCTAATGTTAAGCTAATT+AGG + chr6_2:81043308-81043327 None:intergenic 25.0%
!! ACTTAAGTTTTCTGTCTTTA+TGG + chr6_2:81043471-81043490 None:intergenic 25.0%
! CAAAAAAAGATAGAGACTTA+TGG - chr6_2:81043610-81043629 Msa0931520:CDS 25.0%
! TGACTGTTTGATATAACTTA+TGG - chr6_2:81044104-81044123 Msa0931520:CDS 25.0%
TATGTTGGAAGAACTTGAAT+CGG - chr6_2:81041174-81041193 Msa0931520:three_prime_UTR 30.0%
ATTCAGATAACCAATGTTAC+AGG - chr6_2:81041289-81041308 Msa0931520:three_prime_UTR 30.0%
! ATTTGATAGCAAAAGCTCTA+GGG - chr6_2:81041428-81041447 Msa0931520:exon 30.0%
!! AGAGATTGATAATGGTAAAG+TGG - chr6_2:81041456-81041475 Msa0931520:CDS 30.0%
TACGATAACTGATAGAAACA+CGG + chr6_2:81041574-81041593 None:intergenic 30.0%
TCGGGTATTATTCCAATTTA+TGG - chr6_2:81041646-81041665 Msa0931520:intron 30.0%
! CTTCTATTGTCCAAAGTATT+CGG - chr6_2:81041797-81041816 Msa0931520:intron 30.0%
AACAGCATTAAATTCTGCAA+TGG - chr6_2:81042008-81042027 Msa0931520:intron 30.0%
GACCTTGAATCATATATCAA+TGG - chr6_2:81042054-81042073 Msa0931520:intron 30.0%
GACCATTGATATATGATTCA+AGG + chr6_2:81042059-81042078 None:intergenic 30.0%
TATATCAATGGTCACAATAC+AGG - chr6_2:81042066-81042085 Msa0931520:intron 30.0%
!! GTTGAATTTCTAGTAACAGT+AGG + chr6_2:81042114-81042133 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG + chr6_2:81042581-81042600 None:intergenic 30.0%
CATACTGTAACAAACATAAG+AGG + chr6_2:81042851-81042870 None:intergenic 30.0%
! CTCTTATGTTTGTTACAGTA+TGG - chr6_2:81042849-81042868 Msa0931520:intron 30.0%
! TTTTGGTCAGTATTCAGATT+GGG - chr6_2:81042973-81042992 Msa0931520:intron 30.0%
GATTACTTGAATACAACCTT+TGG - chr6_2:81043043-81043062 Msa0931520:CDS 30.0%
CATGCAACATGTTGTATTAT+CGG - chr6_2:81043118-81043137 Msa0931520:CDS 30.0%
AGTCATTTCGATATTCTTGT+TGG + chr6_2:81043872-81043891 None:intergenic 30.0%
! AAATGACTGTCTTTTCTGTT+AGG - chr6_2:81043884-81043903 Msa0931520:CDS 30.0%
! AATGACTGTCTTTTCTGTTA+GGG - chr6_2:81043885-81043904 Msa0931520:CDS 30.0%
TGTAAGGATATTTGCATGTT+TGG - chr6_2:81044042-81044061 Msa0931520:CDS 30.0%
! CTTATTCTCATAAGCTCTTT+TGG - chr6_2:81044162-81044181 Msa0931520:CDS 30.0%
! AAGCTCTTTTGGATAACTTA+TGG - chr6_2:81044173-81044192 Msa0931520:CDS 30.0%
GCGTTCATTTGATTCTATGT+TGG - chr6_2:81041159-81041178 Msa0931520:three_prime_UTR 35.0%
! GGATAGTTGAAAGTGTGAAA+GGG - chr6_2:81041386-81041405 Msa0931520:three_prime_UTR 35.0%
! GATAGTTGAAAGTGTGAAAG+GGG - chr6_2:81041387-81041406 Msa0931520:three_prime_UTR 35.0%
! ATAGTTGAAAGTGTGAAAGG+GGG - chr6_2:81041388-81041407 Msa0931520:three_prime_UTR 35.0%
! CATTTGATAGCAAAAGCTCT+AGG - chr6_2:81041427-81041446 Msa0931520:exon 35.0%
!! GATTGATAATGGTAAAGTGG+AGG - chr6_2:81041459-81041478 Msa0931520:CDS 35.0%
!!! GTTGTGGTCATTTGTTTTGT+TGG - chr6_2:81041548-81041567 Msa0931520:CDS 35.0%
ACATTCCTTTGCTTTCGAAT+AGG + chr6_2:81041599-81041618 None:intergenic 35.0%
AAGGAATGTCCTGTTTGTAA+AGG - chr6_2:81041610-81041629 Msa0931520:CDS 35.0%
AGGAATGTCCTGTTTGTAAA+GGG - chr6_2:81041611-81041630 Msa0931520:CDS 35.0%
CCATTTCCATGTCCATAAAT+TGG + chr6_2:81041661-81041680 None:intergenic 35.0%
CCAATTTATGGACATGGAAA+TGG - chr6_2:81041658-81041677 Msa0931520:intron 35.0%
ATTTATGGACATGGAAATGG+CGG - chr6_2:81041661-81041680 Msa0931520:intron 35.0%
TGTCTAATACTCTCAACTCT+AGG + chr6_2:81041748-81041767 None:intergenic 35.0%
! TTCTGCTGAAAGATTAGTTC+AGG - chr6_2:81042032-81042051 Msa0931520:intron 35.0%
!! GAATTTCTAGTAACAGTAGG+AGG + chr6_2:81042111-81042130 None:intergenic 35.0%
CTTCTCTTTCTCCTTTAAGT+AGG - chr6_2:81042214-81042233 Msa0931520:intron 35.0%
TTCTACCTCTAGATGAAGAA+GGG + chr6_2:81042314-81042333 None:intergenic 35.0%
! ATGACGGTCTTTTATGTAAG+TGG - chr6_2:81042392-81042411 Msa0931520:intron 35.0%
TGTAAGGATATTTGCCTGTT+TGG - chr6_2:81042564-81042583 Msa0931520:intron 35.0%
AGAGGATATTGACAATTAGC+AGG + chr6_2:81042833-81042852 None:intergenic 35.0%
! CTTTTGGTCAGTATTCAGAT+TGG - chr6_2:81042972-81042991 Msa0931520:intron 35.0%
TATTAGAGGCTCTTATCCAA+AGG + chr6_2:81043062-81043081 None:intergenic 35.0%
GCAATGCACATGATCTTTAT+GGG + chr6_2:81043099-81043118 None:intergenic 35.0%
TGCAATGCACATGATCTTTA+TGG + chr6_2:81043100-81043119 None:intergenic 35.0%
TATTTCCACTCCTTCTGTAT+TGG - chr6_2:81043362-81043381 Msa0931520:CDS 35.0%
ATCCTGTTGTTGCATGTAAT+AGG - chr6_2:81043644-81043663 Msa0931520:CDS 35.0%
TCCTGTTGTTGCATGTAATA+GGG - chr6_2:81043645-81043664 Msa0931520:CDS 35.0%
CTTCTGTGTCTCTGTTAAAT+AGG - chr6_2:81043717-81043736 Msa0931520:CDS 35.0%
! GTCGATAATGTTGCTGTTAT+AGG - chr6_2:81043743-81043762 Msa0931520:CDS 35.0%
TTCTTCTACCGTTTGATGAA+GGG + chr6_2:81043817-81043836 None:intergenic 35.0%
TCAAACGGTAGAAGAAGAAA+TGG - chr6_2:81043821-81043840 Msa0931520:CDS 35.0%
TGATTTGAATCAGGAGCCTT+TGG - chr6_2:81041114-81041133 Msa0931520:three_prime_UTR 40.0%
!! GTACTGGTTTGATGATCCAA+AGG + chr6_2:81041133-81041152 None:intergenic 40.0%
! AAATGAACGCACTGATGTAC+TGG + chr6_2:81041149-81041168 None:intergenic 40.0%
TTGCTTCAAGGTGTGTGATT+CGG + chr6_2:81041219-81041238 None:intergenic 40.0%
CTCTCGAAGTAATTGCTTCA+AGG + chr6_2:81041231-81041250 None:intergenic 40.0%
ATTGGTTATCTGAATCCGAG+AGG + chr6_2:81041284-81041303 None:intergenic 40.0%
TGCAGTTTCTCCTGTAACAT+TGG + chr6_2:81041302-81041321 None:intergenic 40.0%
! GGGATAGTTGAAAGTGTGAA+AGG - chr6_2:81041385-81041404 Msa0931520:three_prime_UTR 40.0%
! TAGTTGAAAGTGTGAAAGGG+GGG - chr6_2:81041389-81041408 Msa0931520:three_prime_UTR 40.0%
GGGATGGAAGAGATTGATAA+TGG - chr6_2:81041448-81041467 Msa0931520:CDS 40.0%
!!! GATCCTGTTTTGACATGTTG+TGG - chr6_2:81041532-81041551 Msa0931520:CDS 40.0%
TGACCACAACATGTCAAAAC+AGG + chr6_2:81041538-81041557 None:intergenic 40.0%
GTATGCCTATTCGAAAGCAA+AGG - chr6_2:81041591-81041610 Msa0931520:CDS 40.0%
GGAATGTCCTGTTTGTAAAG+GGG - chr6_2:81041612-81041631 Msa0931520:CDS 40.0%
TAAAGGGGAGGTAACTGAAT+CGG - chr6_2:81041627-81041646 Msa0931520:CDS 40.0%
CTGATGGAAATGAAAGAAGC+CGG - chr6_2:81041694-81041713 Msa0931520:intron 40.0%
AGAAGAAGAAGATGCTCCTT+GGG + chr6_2:81041782-81041801 None:intergenic 40.0%
TAGAAGAAGAAGATGCTCCT+TGG + chr6_2:81041783-81041802 None:intergenic 40.0%
! CTATTGTCCAAAGTATTCGG+CGG - chr6_2:81041800-81041819 Msa0931520:intron 40.0%
TATGAAACCGCCGAATACTT+TGG + chr6_2:81041810-81041829 None:intergenic 40.0%
!! CATAACCGAATTGGTGGATT+TGG - chr6_2:81041826-81041845 Msa0931520:intron 40.0%
TCTCAGGTGTGGTACTATTA+GGG + chr6_2:81041873-81041892 None:intergenic 40.0%
CAGACAGACAACAATGAACA+TGG - chr6_2:81041925-81041944 Msa0931520:intron 40.0%
ACAGACAACAATGAACATGG+TGG - chr6_2:81041928-81041947 Msa0931520:intron 40.0%
ATCAATGGTCACAATACAGG+AGG - chr6_2:81042069-81042088 Msa0931520:intron 40.0%
!! GTTGATAATGTTGCTGTTGC+AGG - chr6_2:81042240-81042259 Msa0931520:intron 40.0%
CTTCTACCTCTAGATGAAGA+AGG + chr6_2:81042315-81042334 None:intergenic 40.0%
TCTTCATCTAGAGGTAGAAG+AGG - chr6_2:81042315-81042334 Msa0931520:intron 40.0%
CGCAATCTTCTTCTTCTTCT+TGG + chr6_2:81042372-81042391 None:intergenic 40.0%
GAAGAAGAAGATTGCGATGA+CGG - chr6_2:81042376-81042395 Msa0931520:intron 40.0%
AGTATGCATGCATGTAAACG+AGG + chr6_2:81042443-81042462 None:intergenic 40.0%
TGTCTCACTTGAGTAAGTTC+AGG - chr6_2:81042872-81042891 Msa0931520:intron 40.0%
! CAACAAACTAGAAGCATGTG+TGG - chr6_2:81043219-81043238 Msa0931520:CDS 40.0%
ACATGCAACAACAGGATATC+TGG + chr6_2:81043641-81043660 None:intergenic 40.0%
TCCCTATTACATGCAACAAC+AGG + chr6_2:81043649-81043668 None:intergenic 40.0%
AGGCTCAGAAATTCAGACAA+CGG - chr6_2:81043763-81043782 Msa0931520:CDS 40.0%
CTGTTAGACCCTTCATCAAA+CGG - chr6_2:81043806-81043825 Msa0931520:CDS 40.0%
CTTCTTCTACCGTTTGATGA+AGG + chr6_2:81043818-81043837 None:intergenic 40.0%
AGTATGCATGCAAGTAAACG+AGG + chr6_2:81043937-81043956 None:intergenic 40.0%
AAGCAATTACTTCGAGAGCG+AGG - chr6_2:81041233-81041252 Msa0931520:three_prime_UTR 45.0%
ATCTGAATCCGAGAGGAGTT+CGG + chr6_2:81041277-81041296 None:intergenic 45.0%
GTGATGTTCAAGGCGAAGAA+CGG - chr6_2:81041329-81041348 Msa0931520:three_prime_UTR 45.0%
AACGATGCTGATCAGGATGA+AGG - chr6_2:81041364-81041383 Msa0931520:three_prime_UTR 45.0%
ACGATGCTGATCAGGATGAA+GGG - chr6_2:81041365-81041384 Msa0931520:three_prime_UTR 45.0%
AAAGTGTGAAAGGGGGGAAA+AGG - chr6_2:81041395-81041414 Msa0931520:three_prime_UTR 45.0%
!! GATAGCAAAAGCTCTAGGGA+TGG - chr6_2:81041432-81041451 Msa0931520:exon 45.0%
GTAAAGTGGAGGAGAGTAGT+GGG - chr6_2:81041470-81041489 Msa0931520:CDS 45.0%
ATGTCCTGTTTGTAAAGGGG+AGG - chr6_2:81041615-81041634 Msa0931520:CDS 45.0%
GTTACCTCCCCTTTACAAAC+AGG + chr6_2:81041622-81041641 None:intergenic 45.0%
AAAGGGGAGGTAACTGAATC+GGG - chr6_2:81041628-81041647 Msa0931520:CDS 45.0%
AGACAGAAGTTGCTAACCCA+AGG - chr6_2:81041763-81041782 Msa0931520:intron 45.0%
CGGTTTCATAACCGAATTGG+TGG - chr6_2:81041820-81041839 Msa0931520:intron 45.0%
GCTCTCCAAATCCACCAATT+CGG + chr6_2:81041834-81041853 None:intergenic 45.0%
CTCTCAGGTGTGGTACTATT+AGG + chr6_2:81041874-81041893 None:intergenic 45.0%
ACCACACCTGAGAGAAACAA+TGG - chr6_2:81041880-81041899 Msa0931520:intron 45.0%
! ACCATTGTTTCTCTCAGGTG+TGG + chr6_2:81041884-81041903 None:intergenic 45.0%
! GGCAAACCATTGTTTCTCTC+AGG + chr6_2:81041889-81041908 None:intergenic 45.0%
TGAACATGGTGGTTCTCAAC+AGG - chr6_2:81041939-81041958 Msa0931520:intron 45.0%
GTGGTTCTCAACAGGTTTCA+AGG - chr6_2:81041947-81041966 Msa0931520:intron 45.0%
GTTTCAAGGTTGCTAGAGCA+AGG - chr6_2:81041961-81041980 Msa0931520:intron 45.0%
CTAGACCCTTCTTCATCTAG+AGG - chr6_2:81042306-81042325 Msa0931520:intron 45.0%
GACAATTAGCAGGCCCTATT+TGG + chr6_2:81042823-81042842 None:intergenic 45.0%
ACCACAAACTGGAGTCAATG+AGG + chr6_2:81043007-81043026 None:intergenic 45.0%
!! TCATTGACTCCAGTTTGTGG+TGG - chr6_2:81043006-81043025 Msa0931520:CDS 45.0%
TTGTGCCAATACAGAAGGAG+TGG + chr6_2:81043370-81043389 None:intergenic 45.0%
! ACTCCTTCTGTATTGGCACA+AGG - chr6_2:81043369-81043388 Msa0931520:CDS 45.0%
ATCGTCATACGAGTTGCTGT+CGG + chr6_2:81043395-81043414 None:intergenic 45.0%
TGCAGCTGTAGAATCAGTCA+CGG + chr6_2:81043693-81043712 None:intergenic 45.0%
ACAGGAGAAACTGCAACAGC+AGG - chr6_2:81041307-81041326 Msa0931520:three_prime_UTR 50.0%
GCAACAGCAGGTGATGTTCA+AGG - chr6_2:81041319-81041338 Msa0931520:three_prime_UTR 50.0%
ATGTTCAAGGCGAAGAACGG+AGG - chr6_2:81041332-81041351 Msa0931520:three_prime_UTR 50.0%
TGTTCAAGGCGAAGAACGGA+GGG - chr6_2:81041333-81041352 Msa0931520:three_prime_UTR 50.0%
GGTAAAGTGGAGGAGAGTAG+TGG - chr6_2:81041469-81041488 Msa0931520:CDS 50.0%
TATGGACATGGAAATGGCGG+CGG - chr6_2:81041664-81041683 Msa0931520:intron 50.0%
TCGAGGAGGAACTCTCAAAC+CGG + chr6_2:81041716-81041735 None:intergenic 50.0%
CTCTCAACTCTAGGTGCCTT+AGG + chr6_2:81041739-81041758 None:intergenic 50.0%
CGGCGGTTTCATAACCGAAT+TGG - chr6_2:81041817-81041836 Msa0931520:intron 50.0%
ACAAACCAGTCAGAGAGTCG+TGG - chr6_2:81042150-81042169 Msa0931520:intron 50.0%
AGCTGCTGCAGCTACAGAAT+TGG + chr6_2:81042196-81042215 None:intergenic 50.0%
CAAACTGGAGTCAATGAGGC+AGG + chr6_2:81043003-81043022 None:intergenic 50.0%
!! GCCTCATTGACTCCAGTTTG+TGG - chr6_2:81043003-81043022 Msa0931520:CDS 50.0%
TTGACTCCAGTTTGTGGTGG+TGG - chr6_2:81043009-81043028 Msa0931520:CDS 50.0%
TGACTCCAGTTTGTGGTGGT+GGG - chr6_2:81043010-81043029 Msa0931520:CDS 50.0%
TGAATCCGAGAGGAGTTCGG+CGG + chr6_2:81041274-81041293 None:intergenic 55.0%
GAGAGTTCCTCCTCGACCTA+AGG - chr6_2:81041720-81041739 Msa0931520:intron 55.0%
ACTCTAGGTGCCTTAGGTCG+AGG + chr6_2:81041733-81041752 None:intergenic 55.0%
CTTGACCACGACTCTCTGAC+TGG + chr6_2:81042158-81042177 None:intergenic 55.0%
! GACTCCAGTTTGTGGTGGTG+GGG - chr6_2:81043011-81043030 Msa0931520:CDS 55.0%
ATGACCCCACCACCACAAAC+TGG + chr6_2:81043018-81043037 None:intergenic 55.0%
!! AGTTTGTGGTGGTGGGGTCA+TGG - chr6_2:81043017-81043036 Msa0931520:CDS 55.0%
! CGGCCTTGTGCCAATACAGA+AGG + chr6_2:81043375-81043394 None:intergenic 55.0%
TCAAGGCGAAGAACGGAGGG+AGG - chr6_2:81041336-81041355 Msa0931520:three_prime_UTR 60.0%
GGAGCGGAACGATGCTGATC+AGG - chr6_2:81041357-81041376 Msa0931520:three_prime_UTR 60.0%
TGGCGGCGGTGATTGTCTGA+TGG - chr6_2:81041678-81041697 Msa0931520:intron 60.0%
CTAGGTGCCTTAGGTCGAGG+AGG + chr6_2:81041730-81041749 None:intergenic 60.0%
GTCTGCGTGCGAGACTGAAC+AGG + chr6_2:81041910-81041929 None:intergenic 60.0%
CTTCGAGAGCGAGGCAGCGT+CGG - chr6_2:81041242-81041261 Msa0931520:three_prime_UTR 65.0%
TTCGAGAGCGAGGCAGCGTC+GGG - chr6_2:81041243-81041262 Msa0931520:three_prime_UTR 65.0%
GGTTGCCGCCGAACTCCTCT+CGG - chr6_2:81041266-81041285 Msa0931520:three_prime_UTR 65.0%
GCGAAGAACGGAGGGAGGAG+CGG - chr6_2:81041341-81041360 Msa0931520:three_prime_UTR 65.0%
TCGAGAGCGAGGCAGCGTCG+GGG - chr6_2:81041244-81041263 Msa0931520:three_prime_UTR 70.0%
! CGAGAGCGAGGCAGCGTCGG+GGG - chr6_2:81041245-81041264 Msa0931520:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 81041106 81044221 81041106 ID=Msa0931520;Name=Msa0931520
chr6_2 mRNA 81041106 81044221 81041106 ID=Msa0931520-mRNA-1;Parent=Msa0931520;Name=Msa0931520-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0.5|1|1|1|2|332|481
chr6_2 exon 81041106 81041661 81041106 ID=Msa0931520-mRNA-1:exon:14243;Parent=Msa0931520-mRNA-1
chr6_2 exon 81043000 81044221 81043000 ID=Msa0931520-mRNA-1:exon:14242;Parent=Msa0931520-mRNA-1
chr6_2 CDS 81043000 81044221 81043000 ID=Msa0931520-mRNA-1:cds;Parent=Msa0931520-mRNA-1
chr6_2 CDS 81041438 81041661 81041438 ID=Msa0931520-mRNA-1:cds;Parent=Msa0931520-mRNA-1
chr6_2 three_prime_UTR 81041106 81041437 81041106 ID=Msa0931520-mRNA-1:three_prime_utr;Parent=Msa0931520-mRNA-1
Gene Sequence

>Msa0931520

ATGGAGCTTGATTTGAATCAGGAGCCTTTGGATCATCAAACCAGTACATCAGTGCGTTCATTTGATTCTATGTTGGAAGAACTTGAATCGGCTGAAGAAAATATACGAAACCGAATCACACACCTTGAAGCAATTACTTCGAGAGCGAGGCAGCGTCGGGGGTTGCCGCCGAACTCCTCTCGGATTCAGATAACCAATGTTACAGGAGAAACTGCAACAGCAGGTGATGTTCAAGGCGAAGAACGGAGGGAGGAGCGGAACGATGCTGATCAGGATGAAGGGATAGTTGAAAGTGTGAAAGGGGGGAAAAGGAAAAGTTCGCATTTGATAGCAAAAGCTCTAGGGATGGAAGAGATTGATAATGGTAAAGTGGAGGAGAGTAGTGGGAATTTCTTTGATTGTAATATTTGTTTGGATATTGCAAGAGATCCTGTTTTGACATGTTGTGGTCATTTGTTTTGTTGGCCGTGTTTCTATCAGTTATCGTATGCCTATTCGAAAGCAAAGGAATGTCCTGTTTGTAAAGGGGAGGTAACTGAATCGGGTATTATTCCAATTTATGGACATGGAAATGGCGGCGGTGATTGTCTGATGGAAATGAAAGAAGCCGGTTTGAGAGTTCCTCCTCGACCTAAGGCACCTAGAGTTGAGAGTATTAGACAGAAGTTGCTAACCCAAGGAGCATCTTCTTCTTCTATTGTCCAAAGTATTCGGCGGTTTCATAACCGAATTGGTGGATTTGGAGAGCAAGTTCAGTTAGAAAGCCCTAATAGTACCACACCTGAGAGAAACAATGGTTTGCCTGTTCAGTCTCGCACGCAGACAGACAACAATGAACATGGTGGTTCTCAACAGGTTTCAAGGTTGCTAGAGCAAGGAGCTTCTTCGTTTTCGTCACTTTCAACAGCATTAAATTCTGCAATGGATTCTGCTGAAAGATTAGTTCAGGACCTTGAATCATATATCAATGGTCACAATACAGGAGGAAGCAGAGAGCAAAATCCTCCTACTGTTACTAGAAATTCAACTTTAAGTGTCGCTGCTACAAACCAGTCAGAGAGTCGTGGTCAAGATGTTGTTGATCTGACCAATTCTGTAGCTGCAGCAGCTTCTCTTTCTCCTTTAAGTAGGAATGTTGATAATGTTGCTGTTGCAGGCTCACAAATTCATACAACTGATAGAAATTTACAGGTTAGTTTGCTAGACCCTTCTTCATCTAGAGGGAATCTTGCTCAAGATGTTGTTGCCGTGACTGATTCTACAGCTGCAGCAGCTTCTGTGTCTCTGTTAAATAGGAATGTCGATAATGTTGCTGTTATAGGCTCAGAAATTCAGACAACGGATAGAAACTTACAGATTAGACTGTTAGACCCTTCATCAAACGGTAGAAGAAGAAATGGCGTTTCAAGACAAGTTTCAAATGAACCAACAAGAATATCGAAATGA

Protein sequence

>Msa0931520

MELDLNQEPLDHQTSTSVRSFDSMLEELESAEENIRNRITHLEAITSRARQRRGLPPNSSRIQITNVTGETATAGDVQGEERREERNDADQDEGIVESVKGGKRKSSHLIAKALGMEEIDNGKVEESSGNFFDCNICLDIARDPVLTCCGHLFCWPCFYQLSYAYSKAKECPVCKGEVTESGIIPIYGHGNGGGDCLMEMKEAGLRVPPRPKAPRVESIRQKLLTQGASSSSIVQSIRRFHNRIGGFGEQVQLESPNSTTPERNNGLPVQSRTQTDNNEHGGSQQVSRLLEQGASSFSSLSTALNSAMDSAERLVQDLESYINGHNTGGSREQNPPTVTRNSTLSVAATNQSESRGQDVVDLTNSVAAAASLSPLSRNVDNVAVAGSQIHTTDRNLQVSLLDPSSSRGNLAQDVVAVTDSTAAAASVSLLNRNVDNVAVIGSEIQTTDRNLQIRLLDPSSNGRRRNGVSRQVSNEPTRISK*