Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859440 | XP_003616828.1 | 99.160 | 357 | 3 | 0 | 1 | 357 | 1 | 357 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859440 | sp|Q8L633|RNZ2_ARATH | 68.451 | 355 | 101 | 3 | 13 | 357 | 1 | 354 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859440 | G7K7F6 | 99.160 | 357 | 3 | 0 | 1 | 357 | 1 | 357 | 0.0 | 736 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012380 | Msa0859440 | 0.803143 | 4.012132e-49 | -8.615850e-47 |
| Msa0037270 | Msa0859440 | 0.800967 | 1.124215e-48 | -8.615850e-47 |
| Msa0142340 | Msa0859440 | 0.801816 | 7.533234e-49 | -8.615850e-47 |
| Msa0404070 | Msa0859440 | 0.801419 | 9.085422e-49 | -8.615850e-47 |
| Msa0255770 | Msa0859440 | 0.805883 | 1.076304e-49 | -8.615850e-47 |
| Msa0306160 | Msa0859440 | 0.803350 | 3.636048e-49 | -8.615850e-47 |
| Msa0576480 | Msa0859440 | 0.813394 | 2.617441e-51 | -8.615850e-47 |
| Msa0859440 | Msa1228350 | 0.803682 | 3.102726e-49 | -8.615850e-47 |
| Msa0859440 | Msa1228460 | 0.820030 | 8.507969e-53 | -8.615850e-47 |
| Msa0859440 | Msa1255020 | 0.812589 | 3.929029e-51 | -8.615850e-47 |
| Msa0859440 | Msa1295470 | 0.813058 | 3.102276e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859440 | MtrunA17_Chr5g0438591 | 99.160 | 357 | 3 | 0 | 1 | 357 | 1 | 357 | 0.0 | 736 |
| Msa0859440 | MtrunA17_Chr5g0444931 | 55.556 | 288 | 128 | 0 | 65 | 352 | 36 | 323 | 3.82e-124 | 360 |
| Msa0859440 | MtrunA17_Chr1g0162061 | 50.765 | 327 | 147 | 1 | 26 | 352 | 23 | 335 | 9.38e-123 | 357 |
| Msa0859440 | MtrunA17_Chr5g0444941 | 53.226 | 62 | 29 | 0 | 71 | 132 | 17 | 78 | 2.71e-19 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859440 | AT2G04530.1 | 68.451 | 355 | 101 | 3 | 13 | 357 | 1 | 354 | 0.0 | 521 |
| Msa0859440 | AT1G74700.1 | 58.633 | 278 | 115 | 0 | 75 | 352 | 3 | 280 | 1.64e-124 | 359 |
Find 98 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATAACCTGACCCTTTA+AGG | 0.059468 | 5_4:+57779530 | None:intergenic |
| TTCCCAACCAATTCCCTTAA+AGG | 0.164975 | 5_4:-57779544 | Msa0859440:CDS |
| ACAATGATTTAGACCTAAAT+AGG | 0.216099 | 5_4:-57775045 | Msa0859440:three_prime_UTR |
| ATCAATTGCTTTGCTTATTT+CGG | 0.221988 | 5_4:+57779507 | None:intergenic |
| GTCATGTTACCTCAGATATA+TGG | 0.248785 | 5_4:+57776136 | None:intergenic |
| TATCTAAATTTAGATGAATT+TGG | 0.257410 | 5_4:-57775074 | Msa0859440:three_prime_UTR |
| ACCTGACCCTTTAAGGGAAT+TGG | 0.278725 | 5_4:+57779537 | None:intergenic |
| TTAGGTCTAAATCATTGTTT+TGG | 0.287050 | 5_4:+57775050 | None:intergenic |
| TCTCAATTTGTTTCCCGTTC+AGG | 0.297798 | 5_4:+57776806 | None:intergenic |
| TGCTCATTGAACACGGATAA+TGG | 0.358051 | 5_4:+57775213 | None:intergenic |
| TCTCCTGAGGTAGCCTTCAC+TGG | 0.374275 | 5_4:-57776671 | Msa0859440:CDS |
| GGGAAGGAAAGTTGTTGTTT+TGG | 0.377652 | 5_4:+57779562 | None:intergenic |
| TCCCAACCAATTCCCTTAAA+GGG | 0.382940 | 5_4:-57779543 | Msa0859440:CDS |
| AAATTGTGAATTGGTTGCTT+TGG | 0.386759 | 5_4:-57777678 | Msa0859440:CDS |
| GTTGTGTTGTGTTGTGTTGT+GGG | 0.388681 | 5_4:+57779767 | None:intergenic |
| CTCAATGCATCGGCATTAAG+TGG | 0.394913 | 5_4:+57776620 | None:intergenic |
| AACAATACAGTCACCTGAAC+GGG | 0.409727 | 5_4:-57776819 | Msa0859440:CDS |
| GAAGGAATTGTGTGGTGAAA+TGG | 0.411249 | 5_4:+57779586 | None:intergenic |
| ACCAATTCCCTTAAAGGGTC+AGG | 0.420173 | 5_4:-57779538 | Msa0859440:CDS |
| AGTTGAACTAAATTGTGAAT+TGG | 0.422079 | 5_4:-57777687 | Msa0859440:CDS |
| TCAATTGAAGGGGTTTCAAT+TGG | 0.429065 | 5_4:-57779418 | Msa0859440:CDS |
| GTTATATAGTCTACTCAATC+AGG | 0.431968 | 5_4:-57776855 | Msa0859440:CDS |
| ACCCTTTAAGGGAATTGGTT+GGG | 0.439158 | 5_4:+57779542 | None:intergenic |
| TAAATAACCTGACCCTTTAA+GGG | 0.445395 | 5_4:+57779531 | None:intergenic |
| TTTGCATTTGTGTGGTGAAA+TGG | 0.446678 | 5_4:+57779650 | None:intergenic |
| TTGGAAGGATATTCAATTGA+AGG | 0.450402 | 5_4:-57779430 | Msa0859440:CDS |
| ATTGAAGGGGTTTCAATTGG+TGG | 0.451109 | 5_4:-57779415 | Msa0859440:CDS |
| GGAGGGCTGCCAATGTATAT+AGG | 0.451399 | 5_4:-57777812 | Msa0859440:CDS |
| CTCCTGAGGTAGCCTTCACT+GGG | 0.453856 | 5_4:-57776670 | Msa0859440:CDS |
| GGTTGTGTTGTGTTGTGTTG+TGG | 0.458709 | 5_4:+57779766 | None:intergenic |
| TTCATCAAGATACAATATAG+AGG | 0.465852 | 5_4:-57775736 | Msa0859440:intron |
| AAGGAATTGTGTGGTGAAAT+GGG | 0.472269 | 5_4:+57779587 | None:intergenic |
| ATGAAGGAAAGGGTTTAGAG+TGG | 0.475692 | 5_4:+57779705 | None:intergenic |
| GATTTGAAGCCTTCTGTAAG+TGG | 0.478640 | 5_4:+57775274 | None:intergenic |
| TGGTGAAATGGGAAAATTTG+TGG | 0.481992 | 5_4:+57779598 | None:intergenic |
| GTCCAAGACTTCAGCAAAAG+TGG | 0.482390 | 5_4:-57775299 | Msa0859440:CDS |
| CTTGACGTTCACAAGACATT+GGG | 0.483347 | 5_4:-57777713 | Msa0859440:CDS |
| TCATGTTACCTCAGATATAT+GGG | 0.483425 | 5_4:+57776137 | None:intergenic |
| ACAGGTTCAACGAAAAGGTC+TGG | 0.485711 | 5_4:-57779455 | Msa0859440:CDS |
| ACTGGTTACATTCTTTCTCT+AGG | 0.487663 | 5_4:+57775190 | None:intergenic |
| TCAAATATTGATACCTGGCT+TGG | 0.488765 | 5_4:+57777514 | None:intergenic |
| TCAACGAAAAGGTCTGGACT+TGG | 0.488885 | 5_4:-57779449 | Msa0859440:CDS |
| TGAAGGAAAGGGTTTAGAGT+GGG | 0.495530 | 5_4:+57779706 | None:intergenic |
| TCATCATTCATCACTGTCTC+AGG | 0.496125 | 5_4:-57779742 | Msa0859440:five_prime_UTR |
| ATTTGAGAGGATGAAGGAAA+GGG | 0.498326 | 5_4:+57779695 | None:intergenic |
| TTGAAGGTGGGGTTTGTGAG+AGG | 0.509105 | 5_4:+57779625 | None:intergenic |
| AAATCACAGGTTCAACGAAA+AGG | 0.509366 | 5_4:-57779460 | Msa0859440:CDS |
| CAGGGGAGACATATGAAATA+CGG | 0.510868 | 5_4:-57777579 | Msa0859440:CDS |
| CCATGGATTTGAGAGGATGA+AGG | 0.512941 | 5_4:+57779689 | None:intergenic |
| CTACTGTGGTTGAATCATCT+AGG | 0.522327 | 5_4:+57776184 | None:intergenic |
| TTGTGTTGTGTTGTGTTGTG+GGG | 0.526346 | 5_4:+57779768 | None:intergenic |
| CCTTCATCCTCTCAAATCCA+TGG | 0.528672 | 5_4:-57779689 | Msa0859440:exon |
| GACCCTTTAAGGGAATTGGT+TGG | 0.528725 | 5_4:+57779541 | None:intergenic |
| TGGAAGGATATTCAATTGAA+GGG | 0.529752 | 5_4:-57779429 | Msa0859440:CDS |
| TCAACATCGTCTTTGATGCA+AGG | 0.532471 | 5_4:+57777743 | None:intergenic |
| CTCTAGGTGCTCATTGAACA+CGG | 0.535753 | 5_4:+57775206 | None:intergenic |
| TTTAAGGGAATTGGTTGGGA+AGG | 0.538111 | 5_4:+57779546 | None:intergenic |
| GCTTGACGTTCACAAGACAT+TGG | 0.542921 | 5_4:-57777714 | Msa0859440:CDS |
| TCCCCAGTGAAGGCTACCTC+AGG | 0.543025 | 5_4:+57776668 | None:intergenic |
| GAATTGGTTGCTTTGGATGT+CGG | 0.545527 | 5_4:-57777671 | Msa0859440:intron |
| GATTTGAGAGGATGAAGGAA+AGG | 0.550538 | 5_4:+57779694 | None:intergenic |
| ATTCTGATGAATAGCTCTAG+TGG | 0.559629 | 5_4:+57779333 | None:intergenic |
| GGTGAAATGGGAAAATTTGT+GGG | 0.563235 | 5_4:+57779599 | None:intergenic |
| ACAACATGTTATACCAAGCC+AGG | 0.564907 | 5_4:-57777527 | Msa0859440:intron |
| ATTCACAATTTAGTTCAACT+TGG | 0.565102 | 5_4:+57777690 | None:intergenic |
| TTCTGATGAATAGCTCTAGT+GGG | 0.572017 | 5_4:+57779334 | None:intergenic |
| CTTCAAATCACAGTACACAT+AGG | 0.575742 | 5_4:-57775260 | Msa0859440:exon |
| TCAAAAGCACATTTAAACTC+AGG | 0.587683 | 5_4:+57779370 | None:intergenic |
| GCGAAGTGGAAGAGTTGCCA+TGG | 0.593878 | 5_4:+57779672 | None:intergenic |
| CCACGACTTCCTATATACAT+TGG | 0.595400 | 5_4:+57777803 | None:intergenic |
| GGAAGGATATTCAATTGAAG+GGG | 0.609981 | 5_4:-57779428 | Msa0859440:CDS |
| CGAAAAGGTCTGGACTTGGA+AGG | 0.614322 | 5_4:-57779445 | Msa0859440:CDS |
| AAAGTGGTTCCACTTACAGA+AGG | 0.615621 | 5_4:-57775283 | Msa0859440:CDS |
| AAACAATACAGTCACCTGAA+CGG | 0.618544 | 5_4:-57776820 | Msa0859440:CDS |
| TGATGTTGTATCCCCAGTGA+AGG | 0.625436 | 5_4:+57776658 | None:intergenic |
| GTACCGTGTTGCAAAATCAC+AGG | 0.625905 | 5_4:-57779473 | Msa0859440:CDS |
| GAGAGGAATTTGCATTTGTG+TGG | 0.626798 | 5_4:+57779642 | None:intergenic |
| CAAGGAGGTACAAATACTGT+GGG | 0.627100 | 5_4:+57777761 | None:intergenic |
| GAGACAGTGATGAATGATGA+TGG | 0.629590 | 5_4:+57779745 | None:intergenic |
| TTCTGAAAGGTCGAACAACA+AGG | 0.631728 | 5_4:+57777551 | None:intergenic |
| TCAATGCATCGGCATTAAGT+GGG | 0.635067 | 5_4:+57776621 | None:intergenic |
| GGAGGTACAAATACTGTGGG+AGG | 0.640450 | 5_4:+57777764 | None:intergenic |
| GCAAGGAGGTACAAATACTG+TGG | 0.640908 | 5_4:+57777760 | None:intergenic |
| CCAATGTATATAGGAAGTCG+TGG | 0.651899 | 5_4:-57777803 | Msa0859440:CDS |
| ATAACATGTTGTGTTCTGAA+AGG | 0.657454 | 5_4:+57777538 | None:intergenic |
| GTGAAATGGGAAAATTTGTG+GGG | 0.659190 | 5_4:+57779600 | None:intergenic |
| TGGTCATACCCATATATCTG+AGG | 0.662316 | 5_4:-57776145 | Msa0859440:intron |
| ATATATGGGTATGACCATGT+TGG | 0.662736 | 5_4:+57776151 | None:intergenic |
| AGCAAAAGTTCTTATAACCG+AGG | 0.665868 | 5_4:-57776597 | Msa0859440:intron |
| GTAGAGCATGCACGCCAACA+TGG | 0.668020 | 5_4:-57776165 | Msa0859440:CDS |
| AGAGTTGCCATGGATTTGAG+AGG | 0.670139 | 5_4:+57779682 | None:intergenic |
| TGAAATGGGAAAATTTGTGG+GGG | 0.677462 | 5_4:+57779601 | None:intergenic |
| TTGGCGTGCATGCTCTACTG+TGG | 0.686614 | 5_4:+57776170 | None:intergenic |
| AGCTCATTGAAAATGCTCAG+TGG | 0.703675 | 5_4:-57775791 | Msa0859440:CDS |
| AGACACTATATTATCTCCTG+AGG | 0.717343 | 5_4:-57776684 | Msa0859440:CDS |
| TGTGTGGTGAAATGGCGAAG+TGG | 0.729326 | 5_4:+57779658 | None:intergenic |
| ACATCGTCTTTGATGCAAGG+AGG | 0.740269 | 5_4:+57777746 | None:intergenic |
| TCCTGAGGTAGCCTTCACTG+GGG | 0.776935 | 5_4:-57776669 | Msa0859440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATATAATAACTAATATATA+TGG | + | chr5_4:57775728-57775747 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTATATATACTTT+TGG | - | chr5_4:57776070-57776089 | Msa0859440:intron | 10.0% |
| !!! | TAGAGAAAAATATTTTTTAT+TGG | - | chr5_4:57776585-57776604 | Msa0859440:intron | 10.0% |
| !! | CAGTTATAAATTAAAAATAT+CGG | + | chr5_4:57777777-57777796 | None:intergenic | 10.0% |
| !! | ATTATAATTGTGTTAGTATT+AGG | - | chr5_4:57776312-57776331 | Msa0859440:intron | 15.0% |
| !! | TTATAATTGTGTTAGTATTA+GGG | - | chr5_4:57776313-57776332 | Msa0859440:intron | 15.0% |
| !! | GAGAGTAAAAAAATAAAAAT+TGG | - | chr5_4:57776383-57776402 | Msa0859440:intron | 15.0% |
| !! | TTTAATCTAAAAGTTTAGAT+TGG | + | chr5_4:57776412-57776431 | None:intergenic | 15.0% |
| !! | AAATTCATAATAGATTCTTA+TGG | - | chr5_4:57776700-57776719 | Msa0859440:intron | 15.0% |
| !!! | ATCTTTTTACAACTATAAAT+AGG | + | chr5_4:57776766-57776785 | None:intergenic | 15.0% |
| !! | TACTATAATGTAAAAACTTT+AGG | + | chr5_4:57778851-57778870 | None:intergenic | 15.0% |
| !! | TATCTAAATTTAGATGAATT+TGG | - | chr5_4:57779736-57779755 | Msa0859440:five_prime_UTR | 15.0% |
| !!! | TTTAAATGTGCTTTTGATAT+TGG | - | chr5_4:57775446-57775465 | Msa0859440:intron | 20.0% |
| !! | ATCACAAATGAAAACATTAT+CGG | + | chr5_4:57775570-57775589 | None:intergenic | 20.0% |
| !!! | ACCAAAAAAGAATACAATTT+TGG | + | chr5_4:57776037-57776056 | None:intergenic | 20.0% |
| !!! | ACTAGTAAGGTTTTAAATAA+AGG | - | chr5_4:57776132-57776151 | Msa0859440:intron | 20.0% |
| !! | TATAATTGTGTTAGTATTAG+GGG | - | chr5_4:57776314-57776333 | Msa0859440:intron | 20.0% |
| !!! | AATATGTTTTTGATAAAGCA+TGG | + | chr5_4:57776359-57776378 | None:intergenic | 20.0% |
| !!! | ATTTTGACTTAGATGAATAA+AGG | - | chr5_4:57776463-57776482 | Msa0859440:intron | 20.0% |
| !!! | TGATGATTTTGAATGATTTA+GGG | - | chr5_4:57776977-57776996 | Msa0859440:intron | 20.0% |
| !!! | ATTTGTCAATTTTCATTTCA+GGG | - | chr5_4:57777213-57777232 | Msa0859440:intron | 20.0% |
| !!! | ATTTAAGTTGTGTATGTATT+TGG | - | chr5_4:57777518-57777537 | Msa0859440:intron | 20.0% |
| !!! | TTTTAATTTATAACTGCCAT+AGG | - | chr5_4:57777781-57777800 | Msa0859440:CDS | 20.0% |
| !!! | TTTCTTAACATCTATTTCTA+TGG | + | chr5_4:57778319-57778338 | None:intergenic | 20.0% |
| !! | ATTGTTGAAACTATTATAAC+AGG | - | chr5_4:57778596-57778615 | Msa0859440:intron | 20.0% |
| !! | TATAATGTAAAAACTTTAGG+TGG | + | chr5_4:57778848-57778867 | None:intergenic | 20.0% |
| !!! | TAACATTCTTTTTCATAAAC+TGG | + | chr5_4:57779641-57779660 | None:intergenic | 20.0% |
| ! | ATCAATTGCTTTGCTTATTT+CGG | + | chr5_4:57775306-57775325 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTCCCTTTCTTTC+TGG | - | chr5_4:57775941-57775960 | Msa0859440:intron | 25.0% |
| !!! | TTTTTTTTCCCTTTCTTTCT+GGG | - | chr5_4:57775942-57775961 | Msa0859440:intron | 25.0% |
| !!! | GCCAAAATTGTATTCTTTTT+TGG | - | chr5_4:57776033-57776052 | Msa0859440:intron | 25.0% |
| ! | ACATATAACATGTACTAGTA+AGG | - | chr5_4:57776119-57776138 | Msa0859440:intron | 25.0% |
| !!! | GTAAGGTTTTAAATAAAGGT+CGG | - | chr5_4:57776136-57776155 | Msa0859440:intron | 25.0% |
| !! | AAACTTCTCTAGAAAAACTT+CGG | + | chr5_4:57776634-57776653 | None:intergenic | 25.0% |
| ! | TAATAATTCGAAAACCGAAA+AGG | + | chr5_4:57776845-57776864 | None:intergenic | 25.0% |
| ! | AACATTTACAACAATACACA+GGG | + | chr5_4:57776870-57776889 | None:intergenic | 25.0% |
| !! | GTGATGATTTTGAATGATTT+AGG | - | chr5_4:57776976-57776995 | Msa0859440:intron | 25.0% |
| !! | ATTCACAATTTAGTTCAACT+TGG | + | chr5_4:57777123-57777142 | None:intergenic | 25.0% |
| ! | AGTTGAACTAAATTGTGAAT+TGG | - | chr5_4:57777123-57777142 | Msa0859440:intron | 25.0% |
| !! | GATTTGTCAATTTTCATTTC+AGG | - | chr5_4:57777212-57777231 | Msa0859440:intron | 25.0% |
| !! | TTTGTCAATTTTCATTTCAG+GGG | - | chr5_4:57777214-57777233 | Msa0859440:intron | 25.0% |
| ! | TATGTTCAAATATTGATACC+TGG | + | chr5_4:57777304-57777323 | None:intergenic | 25.0% |
| ! | AAAAACAAGCATATGTTTCA+TGG | + | chr5_4:57777484-57777503 | None:intergenic | 25.0% |
| ! | CAGAAAAATTGTAAAGAGTA+CGG | + | chr5_4:57777554-57777573 | None:intergenic | 25.0% |
| !! | AAACGGAAAATATAGGTTTT+AGG | + | chr5_4:57777649-57777668 | None:intergenic | 25.0% |
| !! | TAAAACCTATATTTTCCGTT+TGG | - | chr5_4:57777648-57777667 | Msa0859440:intron | 25.0% |
| !! | AAAACCTATATTTTCCGTTT+GGG | - | chr5_4:57777649-57777668 | Msa0859440:intron | 25.0% |
| ! | ACAATGAATATGTTGTCAAA+TGG | - | chr5_4:57777742-57777761 | Msa0859440:CDS | 25.0% |
| ! | CAATGAATATGTTGTCAAAT+GGG | - | chr5_4:57777743-57777762 | Msa0859440:CDS | 25.0% |
| ! | ATTGAGAAACTAAAAAAGTC+AGG | - | chr5_4:57778020-57778039 | Msa0859440:intron | 25.0% |
| ! | AGATGTTAAGAAATCAAGTA+TGG | - | chr5_4:57778326-57778345 | Msa0859440:intron | 25.0% |
| ! | GATGTTAAGAAATCAAGTAT+GGG | - | chr5_4:57778327-57778346 | Msa0859440:intron | 25.0% |
| ! | ATGTTAAGAAATCAAGTATG+GGG | - | chr5_4:57778328-57778347 | Msa0859440:intron | 25.0% |
| !! | TTTAACATTTTCTCTCAAGT+TGG | - | chr5_4:57778438-57778457 | Msa0859440:intron | 25.0% |
| ! | AAACAATGATAGAAATAGAG+AGG | + | chr5_4:57778566-57778585 | None:intergenic | 25.0% |
| !!! | TGACGTCTTTCATTATTTTA+TGG | - | chr5_4:57778693-57778712 | Msa0859440:intron | 25.0% |
| !!! | CTAGGTTTTTTATCTTGAAA+TGG | + | chr5_4:57778938-57778957 | None:intergenic | 25.0% |
| ! | TTAAACATGTTTACAACATC+AGG | + | chr5_4:57778993-57779012 | None:intergenic | 25.0% |
| ! | TTCATCAAGATACAATATAG+AGG | - | chr5_4:57779074-57779093 | Msa0859440:intron | 25.0% |
| ! | CTATTTAGATGTAAAACTCT+TGG | - | chr5_4:57779169-57779188 | Msa0859440:intron | 25.0% |
| !! | TTAGGTCTAAATCATTGTTT+TGG | + | chr5_4:57779763-57779782 | None:intergenic | 25.0% |
| TAAATAACCTGACCCTTTAA+GGG | + | chr5_4:57775282-57775301 | None:intergenic | 30.0% | |
| ATAAATAACCTGACCCTTTA+AGG | + | chr5_4:57775283-57775302 | None:intergenic | 30.0% | |
| TTGGAAGGATATTCAATTGA+AGG | - | chr5_4:57775380-57775399 | Msa0859440:intron | 30.0% | |
| TGGAAGGATATTCAATTGAA+GGG | - | chr5_4:57775381-57775400 | Msa0859440:intron | 30.0% | |
| ! | TCAAAAGCACATTTAAACTC+AGG | + | chr5_4:57775443-57775462 | None:intergenic | 30.0% |
| TATGGTTTATAACATAGACC+AGG | + | chr5_4:57775710-57775729 | None:intergenic | 30.0% | |
| !! | TTGCTTTTATTTGAGACTAG+AGG | - | chr5_4:57775766-57775785 | Msa0859440:CDS | 30.0% |
| !! | TGCTTTTATTTGAGACTAGA+GGG | - | chr5_4:57775767-57775786 | Msa0859440:CDS | 30.0% |
| TTGTACTAAATCGCATATCA+AGG | + | chr5_4:57775858-57775877 | None:intergenic | 30.0% | |
| !! | TACAAAGTGTTGTCAAATAG+TGG | - | chr5_4:57775873-57775892 | Msa0859440:intron | 30.0% |
| ATACAAATCCCAGAAAGAAA+GGG | + | chr5_4:57775953-57775972 | None:intergenic | 30.0% | |
| AATACAAATCCCAGAAAGAA+AGG | + | chr5_4:57775954-57775973 | None:intergenic | 30.0% | |
| !!! | ATACTTTTGGATTAGTGTGA+AGG | - | chr5_4:57776083-57776102 | Msa0859440:intron | 30.0% |
| !!! | TACTTTTGGATTAGTGTGAA+GGG | - | chr5_4:57776084-57776103 | Msa0859440:intron | 30.0% |
| ! | GATAGCTTCTGAAAAGATTA+TGG | - | chr5_4:57776273-57776292 | Msa0859440:intron | 30.0% |
| TTGACTTAGATGAATAAAGG+AGG | - | chr5_4:57776466-57776485 | Msa0859440:intron | 30.0% | |
| TGACTTAGATGAATAAAGGA+GGG | - | chr5_4:57776467-57776486 | Msa0859440:intron | 30.0% | |
| GAAATATACGTAGATGTTAG+AGG | - | chr5_4:57776509-57776528 | Msa0859440:intron | 30.0% | |
| TAATAGATTCTTATGGAGCT+TGG | - | chr5_4:57776707-57776726 | Msa0859440:intron | 30.0% | |
| CAACATTTACAACAATACAC+AGG | + | chr5_4:57776871-57776890 | None:intergenic | 30.0% | |
| !! | AACTCACGAAAAAAAGTACT+AGG | + | chr5_4:57776902-57776921 | None:intergenic | 30.0% |
| ! | TGATTTTGAATGATTTAGGG+AGG | - | chr5_4:57776980-57776999 | Msa0859440:intron | 30.0% |
| ! | GATTTTGAATGATTTAGGGA+GGG | - | chr5_4:57776981-57777000 | Msa0859440:intron | 30.0% |
| AAATTGTGAATTGGTTGCTT+TGG | - | chr5_4:57777132-57777151 | Msa0859440:intron | 30.0% | |
| ! | ATAACATGTTGTGTTCTGAA+AGG | + | chr5_4:57777275-57777294 | None:intergenic | 30.0% |
| GCAATTTCAAACAAAGTTCA+TGG | - | chr5_4:57777339-57777358 | Msa0859440:intron | 30.0% | |
| AAATCCCAAACGGAAAATAT+AGG | + | chr5_4:57777656-57777675 | None:intergenic | 30.0% | |
| !! | TATATTTTCCGTTTGGGATT+TGG | - | chr5_4:57777655-57777674 | Msa0859440:intron | 30.0% |
| CATATTCATTGTCACATACA+TGG | + | chr5_4:57777734-57777753 | None:intergenic | 30.0% | |
| GTTATATAGTCTACTCAATC+AGG | - | chr5_4:57777955-57777974 | Msa0859440:intron | 30.0% | |
| TTAAAAGATGTGTTGTACCT+CGG | + | chr5_4:57778233-57778252 | None:intergenic | 30.0% | |
| !! | CATCTATTTCTATGGATTTC+AGG | + | chr5_4:57778311-57778330 | None:intergenic | 30.0% |
| GTGAAATGAGAAAAACTTGA+AGG | + | chr5_4:57778399-57778418 | None:intergenic | 30.0% | |
| GATAGAAATAGAGAGGAATA+GGG | + | chr5_4:57778559-57778578 | None:intergenic | 30.0% | |
| TGATAGAAATAGAGAGGAAT+AGG | + | chr5_4:57778560-57778579 | None:intergenic | 30.0% | |
| TCATGTTACCTCAGATATAT+GGG | + | chr5_4:57778676-57778695 | None:intergenic | 30.0% | |
| CAACTTTGTAGACAAAATCA+AGG | - | chr5_4:57778716-57778735 | Msa0859440:intron | 30.0% | |
| !! | ACAATATAGAGGTACTGTTA+TGG | - | chr5_4:57779085-57779104 | Msa0859440:intron | 30.0% |
| TTTAGATGTAAAACTCTTGG+CGG | - | chr5_4:57779172-57779191 | Msa0859440:intron | 30.0% | |
| TTGTTCAAAATAGTGCATTG+CGG | + | chr5_4:57779282-57779301 | None:intergenic | 30.0% | |
| GTTCAAATTCTGCTATACTA+TGG | + | chr5_4:57779320-57779339 | None:intergenic | 30.0% | |
| TGCAAAATGCAAAATTAGTG+TGG | + | chr5_4:57779405-57779424 | None:intergenic | 30.0% | |
| AAAATAAGCACTTTAACTGC+AGG | - | chr5_4:57779460-57779479 | Msa0859440:CDS | 30.0% | |
| ATTTGAGAGGATGAAGGAAA+GGG | + | chr5_4:57775118-57775137 | None:intergenic | 35.0% | |
| TTTGCATTTGTGTGGTGAAA+TGG | + | chr5_4:57775163-57775182 | None:intergenic | 35.0% | |
| TGAAATGGGAAAATTTGTGG+GGG | + | chr5_4:57775212-57775231 | None:intergenic | 35.0% | |
| GTGAAATGGGAAAATTTGTG+GGG | + | chr5_4:57775213-57775232 | None:intergenic | 35.0% | |
| GGTGAAATGGGAAAATTTGT+GGG | + | chr5_4:57775214-57775233 | None:intergenic | 35.0% | |
| TGGTGAAATGGGAAAATTTG+TGG | + | chr5_4:57775215-57775234 | None:intergenic | 35.0% | |
| AAGGAATTGTGTGGTGAAAT+GGG | + | chr5_4:57775226-57775245 | None:intergenic | 35.0% | |
| !!! | GAAAGTTGTTGTTTTGGAGA+AGG | + | chr5_4:57775245-57775264 | None:intergenic | 35.0% |
| AAATCACAGGTTCAACGAAA+AGG | - | chr5_4:57775350-57775369 | Msa0859440:intron | 35.0% | |
| GGAAGGATATTCAATTGAAG+GGG | - | chr5_4:57775382-57775401 | Msa0859440:intron | 35.0% | |
| TCAATTGAAGGGGTTTCAAT+TGG | - | chr5_4:57775392-57775411 | Msa0859440:intron | 35.0% | |
| !! | TTCTGATGAATAGCTCTAGT+GGG | + | chr5_4:57775479-57775498 | None:intergenic | 35.0% |
| !! | ATTCTGATGAATAGCTCTAG+TGG | + | chr5_4:57775480-57775499 | None:intergenic | 35.0% |
| TGTTGTCAAATAGTGGCTAT+AGG | - | chr5_4:57775880-57775899 | Msa0859440:intron | 35.0% | |
| GTTATAGCATTGTAGTGTAG+AGG | - | chr5_4:57775906-57775925 | Msa0859440:intron | 35.0% | |
| GACAATATTGATGCTCATCA+TGG | - | chr5_4:57775982-57776001 | Msa0859440:intron | 35.0% | |
| TGTGTTAGTATTAGGGGAAA+AGG | - | chr5_4:57776320-57776339 | Msa0859440:intron | 35.0% | |
| TAGAGAAATCTGCTGCTATA+GGG | + | chr5_4:57776660-57776679 | None:intergenic | 35.0% | |
| ATAGAGAAATCTGCTGCTAT+AGG | + | chr5_4:57776661-57776680 | None:intergenic | 35.0% | |
| AATTCGAAAACCGAAAAGGA+AGG | + | chr5_4:57776841-57776860 | None:intergenic | 35.0% | |
| ATGTGTCAGTTGTCTTTCTT+TGG | - | chr5_4:57777163-57777182 | Msa0859440:intron | 35.0% | |
| TCAAATATTGATACCTGGCT+TGG | + | chr5_4:57777299-57777318 | None:intergenic | 35.0% | |
| !! | GAAATTGCTTTTGCACAAGA+AGG | + | chr5_4:57777327-57777346 | None:intergenic | 35.0% |
| TGTTTCATGGATAAAACACG+AGG | + | chr5_4:57777471-57777490 | None:intergenic | 35.0% | |
| !!! | CGGAAAATATAGGTTTTAGG+AGG | + | chr5_4:57777646-57777665 | None:intergenic | 35.0% |
| ATCTCTTCACAAATTGCCTA+TGG | + | chr5_4:57777800-57777819 | None:intergenic | 35.0% | |
| !! | TGTGTTATACAGCGGATTTT+TGG | - | chr5_4:57777848-57777867 | Msa0859440:intron | 35.0% |
| ! | AAACCTGGTTATGTTTTGCA+GGG | - | chr5_4:57777933-57777952 | Msa0859440:intron | 35.0% |
| AAACAATACAGTCACCTGAA+CGG | - | chr5_4:57777990-57778009 | Msa0859440:intron | 35.0% | |
| ACTAAAAAAGTCAGGTGTTC+AGG | - | chr5_4:57778028-57778047 | Msa0859440:intron | 35.0% | |
| AGACACTATATTATCTCCTG+AGG | - | chr5_4:57778126-57778145 | Msa0859440:intron | 35.0% | |
| ! | AACTTTTGCTCTCAATGCAT+CGG | + | chr5_4:57778203-57778222 | None:intergenic | 35.0% |
| AGCAAAAGTTCTTATAACCG+AGG | - | chr5_4:57778213-57778232 | Msa0859440:intron | 35.0% | |
| ATATATGGGTATGACCATGT+TGG | + | chr5_4:57778662-57778681 | None:intergenic | 35.0% | |
| GTCATGTTACCTCAGATATA+TGG | + | chr5_4:57778677-57778696 | None:intergenic | 35.0% | |
| ATAGACACTTGAGTAAAACG+AGG | + | chr5_4:57778782-57778801 | None:intergenic | 35.0% | |
| TTAGATGTAAAACTCTTGGC+GGG | - | chr5_4:57779173-57779192 | Msa0859440:intron | 35.0% | |
| TAACCAATGTTGTCAAACAG+CGG | - | chr5_4:57779200-57779219 | Msa0859440:intron | 35.0% | |
| CTTCAAATCACAGTACACAT+AGG | - | chr5_4:57779550-57779569 | Msa0859440:CDS | 35.0% | |
| ACTGGTTACATTCTTTCTCT+AGG | + | chr5_4:57779623-57779642 | None:intergenic | 35.0% | |
| GAGACAGTGATGAATGATGA+TGG | + | chr5_4:57775068-57775087 | None:intergenic | 40.0% | |
| TCATCATTCATCACTGTCTC+AGG | - | chr5_4:57775068-57775087 | Msa0859440:three_prime_UTR | 40.0% | |
| ! | TGAAGGAAAGGGTTTAGAGT+GGG | + | chr5_4:57775107-57775126 | None:intergenic | 40.0% |
| ATGAAGGAAAGGGTTTAGAG+TGG | + | chr5_4:57775108-57775127 | None:intergenic | 40.0% | |
| GATTTGAGAGGATGAAGGAA+AGG | + | chr5_4:57775119-57775138 | None:intergenic | 40.0% | |
| GAGAGGAATTTGCATTTGTG+TGG | + | chr5_4:57775171-57775190 | None:intergenic | 40.0% | |
| GAAAATTTGTGGGGGTTTGA+AGG | + | chr5_4:57775204-57775223 | None:intergenic | 40.0% | |
| GAAGGAATTGTGTGGTGAAA+TGG | + | chr5_4:57775227-57775246 | None:intergenic | 40.0% | |
| !!! | GTTTTGGAGAAGGAATTGTG+TGG | + | chr5_4:57775235-57775254 | None:intergenic | 40.0% |
| !!! | GGGAAGGAAAGTTGTTGTTT+TGG | + | chr5_4:57775251-57775270 | None:intergenic | 40.0% |
| TTTAAGGGAATTGGTTGGGA+AGG | + | chr5_4:57775267-57775286 | None:intergenic | 40.0% | |
| TTCCCAACCAATTCCCTTAA+AGG | - | chr5_4:57775266-57775285 | Msa0859440:CDS | 40.0% | |
| TCCCAACCAATTCCCTTAAA+GGG | - | chr5_4:57775267-57775286 | Msa0859440:CDS | 40.0% | |
| ! | ACCCTTTAAGGGAATTGGTT+GGG | + | chr5_4:57775271-57775290 | None:intergenic | 40.0% |
| ! | GAACCTGTGATTTTGCAACA+CGG | + | chr5_4:57775343-57775362 | None:intergenic | 40.0% |
| ATTGAAGGGGTTTCAATTGG+TGG | - | chr5_4:57775395-57775414 | Msa0859440:intron | 40.0% | |
| CGTTGAATAACTGTTGTACC+TGG | - | chr5_4:57775689-57775708 | Msa0859440:intron | 40.0% | |
| !! | CAATTTTGGCAGCAAAAGTG+TGG | + | chr5_4:57776023-57776042 | None:intergenic | 40.0% |
| ATCCTCAGTTGCATTTGACT+AGG | - | chr5_4:57776210-57776229 | Msa0859440:intron | 40.0% | |
| ATCCTAGTCAAATGCAACTG+AGG | + | chr5_4:57776215-57776234 | None:intergenic | 40.0% | |
| GATTCTTATGGAGCTTGGTA+AGG | - | chr5_4:57776712-57776731 | Msa0859440:intron | 40.0% | |
| CAACTCAAGTAATCTAGTGC+TGG | - | chr5_4:57776815-57776834 | Msa0859440:CDS | 40.0% | |
| CCACGACTTCCTATATACAT+TGG | + | chr5_4:57777010-57777029 | None:intergenic | 40.0% | |
| CCAATGTATATAGGAAGTCG+TGG | - | chr5_4:57777007-57777026 | Msa0859440:intron | 40.0% | |
| ! | CAAGGAGGTACAAATACTGT+GGG | + | chr5_4:57777052-57777071 | None:intergenic | 40.0% |
| TCAACATCGTCTTTGATGCA+AGG | + | chr5_4:57777070-57777089 | None:intergenic | 40.0% | |
| CTTGACGTTCACAAGACATT+GGG | - | chr5_4:57777097-57777116 | Msa0859440:intron | 40.0% | |
| ! | GAATTGGTTGCTTTGGATGT+CGG | - | chr5_4:57777139-57777158 | Msa0859440:intron | 40.0% |
| TGTCAGTTGTCTTTCTTTGG+TGG | - | chr5_4:57777166-57777185 | Msa0859440:intron | 40.0% | |
| ! | TTGTCTTTCTTTGGTGGTCA+GGG | - | chr5_4:57777172-57777191 | Msa0859440:intron | 40.0% |
| CAGGGGAGACATATGAAATA+CGG | - | chr5_4:57777231-57777250 | Msa0859440:intron | 40.0% | |
| ! | TTCTGAAAGGTCGAACAACA+AGG | + | chr5_4:57777262-57777281 | None:intergenic | 40.0% |
| ACAACATGTTATACCAAGCC+AGG | - | chr5_4:57777283-57777302 | Msa0859440:intron | 40.0% | |
| AAGTTCATGGCCCAAATTAG+CGG | - | chr5_4:57777352-57777371 | Msa0859440:intron | 40.0% | |
| TAGCCCAAAACCGCTAATTT+GGG | + | chr5_4:57777365-57777384 | None:intergenic | 40.0% | |
| !! | CTGAAAGTATCTAGCAACAC+AGG | + | chr5_4:57777422-57777441 | None:intergenic | 40.0% |
| TCATGGATAAAACACGAGGA+TGG | + | chr5_4:57777467-57777486 | None:intergenic | 40.0% | |
| TCATGCATCCAAATCCCAAA+CGG | + | chr5_4:57777666-57777685 | None:intergenic | 40.0% | |
| GGATTTGGATGCATGAGAAA+TGG | - | chr5_4:57777670-57777689 | Msa0859440:intron | 40.0% | |
| TGTATAACACACCCAGTCTA+TGG | + | chr5_4:57777839-57777858 | None:intergenic | 40.0% | |
| AAGCACTATGCTGTTGTCAA+TGG | + | chr5_4:57777881-57777900 | None:intergenic | 40.0% | |
| ATAGTGCTTTGCAGATCTCT+TGG | - | chr5_4:57777892-57777911 | Msa0859440:intron | 40.0% | |
| TTGCAGATCTCTTGGTTACA+TGG | - | chr5_4:57777900-57777919 | Msa0859440:intron | 40.0% | |
| CATGGATCATAATGCAAACC+TGG | - | chr5_4:57777918-57777937 | Msa0859440:intron | 40.0% | |
| ! | CAAACCTGGTTATGTTTTGC+AGG | - | chr5_4:57777932-57777951 | Msa0859440:intron | 40.0% |
| TAACCCTGCAAAACATAACC+AGG | + | chr5_4:57777939-57777958 | None:intergenic | 40.0% | |
| ACTCAATCAGGAAAAAGCTG+AGG | - | chr5_4:57777967-57777986 | Msa0859440:intron | 40.0% | |
| AACAATACAGTCACCTGAAC+GGG | - | chr5_4:57777991-57778010 | Msa0859440:intron | 40.0% | |
| ! | TCTCAATTTGTTTCCCGTTC+AGG | + | chr5_4:57778007-57778026 | None:intergenic | 40.0% |
| ! | TCAATGCATCGGCATTAAGT+GGG | + | chr5_4:57778192-57778211 | None:intergenic | 40.0% |
| GGTATACATGAGCTGCTTAA+AGG | + | chr5_4:57778472-57778491 | None:intergenic | 40.0% | |
| TGTATACCAGTTGACGTTGT+TGG | - | chr5_4:57778484-57778503 | Msa0859440:intron | 40.0% | |
| AGGGAGGAAGTAAGAAATCA+TGG | + | chr5_4:57778540-57778559 | None:intergenic | 40.0% | |
| AGAAATAGAGAGGAATAGGG+AGG | + | chr5_4:57778556-57778575 | None:intergenic | 40.0% | |
| CTACTGTGGTTGAATCATCT+AGG | + | chr5_4:57778629-57778648 | None:intergenic | 40.0% | |
| TGGTCATACCCATATATCTG+AGG | - | chr5_4:57778665-57778684 | Msa0859440:intron | 40.0% | |
| CACTTGAGTAAAACGAGGAA+GGG | + | chr5_4:57778777-57778796 | None:intergenic | 40.0% | |
| ACACTTGAGTAAAACGAGGA+AGG | + | chr5_4:57778778-57778797 | None:intergenic | 40.0% | |
| AGCTCATTGAAAATGCTCAG+TGG | - | chr5_4:57779019-57779038 | Msa0859440:intron | 40.0% | |
| ATAGACTTGCATCCCTCAAA+TGG | - | chr5_4:57779129-57779148 | Msa0859440:intron | 40.0% | |
| TAGACTTGCATCCCTCAAAT+GGG | - | chr5_4:57779130-57779149 | Msa0859440:intron | 40.0% | |
| TGCACATATGACCCATTTGA+GGG | + | chr5_4:57779144-57779163 | None:intergenic | 40.0% | |
| ATGCACATATGACCCATTTG+AGG | + | chr5_4:57779145-57779164 | None:intergenic | 40.0% | |
| TAGATGTAAAACTCTTGGCG+GGG | - | chr5_4:57779174-57779193 | Msa0859440:intron | 40.0% | |
| TTTCGTTCCACGATTGACAT+TGG | - | chr5_4:57779354-57779373 | Msa0859440:CDS | 40.0% | |
| TTCGTTCCACGATTGACATT+GGG | - | chr5_4:57779355-57779374 | Msa0859440:CDS | 40.0% | |
| !! | AATTAGTGTGGTGCTACTAG+AGG | + | chr5_4:57779393-57779412 | None:intergenic | 40.0% |
| !! | AACCACTTTTGCTGAAGTCT+TGG | + | chr5_4:57779516-57779535 | None:intergenic | 40.0% |
| AAAGTGGTTCCACTTACAGA+AGG | - | chr5_4:57779527-57779546 | Msa0859440:CDS | 40.0% | |
| ! | GATTTGAAGCCTTCTGTAAG+TGG | + | chr5_4:57779539-57779558 | None:intergenic | 40.0% |
| TGCTCATTGAACACGGATAA+TGG | + | chr5_4:57779600-57779619 | None:intergenic | 40.0% | |
| CCATGGATTTGAGAGGATGA+AGG | + | chr5_4:57775124-57775143 | None:intergenic | 45.0% | |
| CCTTCATCCTCTCAAATCCA+TGG | - | chr5_4:57775121-57775140 | Msa0859440:three_prime_UTR | 45.0% | |
| AGAGTTGCCATGGATTTGAG+AGG | + | chr5_4:57775131-57775150 | None:intergenic | 45.0% | |
| ATTTGTGGGGGTTTGAAGGT+GGG | + | chr5_4:57775200-57775219 | None:intergenic | 45.0% | |
| AATTTGTGGGGGTTTGAAGG+TGG | + | chr5_4:57775201-57775220 | None:intergenic | 45.0% | |
| ! | GACCCTTTAAGGGAATTGGT+TGG | + | chr5_4:57775272-57775291 | None:intergenic | 45.0% |
| ACCAATTCCCTTAAAGGGTC+AGG | - | chr5_4:57775272-57775291 | Msa0859440:CDS | 45.0% | |
| ! | ACCTGACCCTTTAAGGGAAT+TGG | + | chr5_4:57775276-57775295 | None:intergenic | 45.0% |
| GTACCGTGTTGCAAAATCAC+AGG | - | chr5_4:57775337-57775356 | Msa0859440:intron | 45.0% | |
| ACAGGTTCAACGAAAAGGTC+TGG | - | chr5_4:57775355-57775374 | Msa0859440:intron | 45.0% | |
| TCAACGAAAAGGTCTGGACT+TGG | - | chr5_4:57775361-57775380 | Msa0859440:intron | 45.0% | |
| ATCGAGACACGGCTAATTTG+AGG | - | chr5_4:57775639-57775658 | Msa0859440:intron | 45.0% | |
| TCGAGACACGGCTAATTTGA+GGG | - | chr5_4:57775640-57775659 | Msa0859440:intron | 45.0% | |
| GCAACTGAGGATAACAGTTG+CGG | + | chr5_4:57776202-57776221 | None:intergenic | 45.0% | |
| ! | GCAAGGAGGTACAAATACTG+TGG | + | chr5_4:57777053-57777072 | None:intergenic | 45.0% |
| ACATCGTCTTTGATGCAAGG+AGG | + | chr5_4:57777067-57777086 | None:intergenic | 45.0% | |
| GCTTGACGTTCACAAGACAT+TGG | - | chr5_4:57777096-57777115 | Msa0859440:intron | 45.0% | |
| ! | GTTGTCTTTCTTTGGTGGTC+AGG | - | chr5_4:57777171-57777190 | Msa0859440:intron | 45.0% |
| ! | TGTCTTTCTTTGGTGGTCAG+GGG | - | chr5_4:57777173-57777192 | Msa0859440:intron | 45.0% |
| ! | ATGGCCCAAATTAGCGGTTT+TGG | - | chr5_4:57777358-57777377 | Msa0859440:intron | 45.0% |
| ! | TGGCCCAAATTAGCGGTTTT+GGG | - | chr5_4:57777359-57777378 | Msa0859440:intron | 45.0% |
| GTAGCCCAAAACCGCTAATT+TGG | + | chr5_4:57777366-57777385 | None:intergenic | 45.0% | |
| ! | ATGTTGTCAAATGGGTGCTG+CGG | - | chr5_4:57777751-57777770 | Msa0859440:CDS | 45.0% |
| AGACTGGGTGTGTTATACAG+CGG | - | chr5_4:57777840-57777859 | Msa0859440:intron | 45.0% | |
| ATGCTGTTGTCAATGGCAGA+AGG | + | chr5_4:57777874-57777893 | None:intergenic | 45.0% | |
| TGATGTTGTATCCCCAGTGA+AGG | + | chr5_4:57778155-57778174 | None:intergenic | 45.0% | |
| ! | CTCAATGCATCGGCATTAAG+TGG | + | chr5_4:57778193-57778212 | None:intergenic | 45.0% |
| ACAACTCCAACAACGTCAAC+TGG | + | chr5_4:57778493-57778512 | None:intergenic | 45.0% | |
| TAGAGCGTGCATGAAGTTCT+AGG | + | chr5_4:57778956-57778975 | None:intergenic | 45.0% | |
| AGATGTAAAACTCTTGGCGG+GGG | - | chr5_4:57779175-57779194 | Msa0859440:intron | 45.0% | |
| TAGCCGCTGTTTGACAACAT+TGG | + | chr5_4:57779206-57779225 | None:intergenic | 45.0% | |
| TGTTGTCAAACAGCGGCTAT+AGG | - | chr5_4:57779207-57779226 | Msa0859440:intron | 45.0% | |
| GTTGTCAAACAGCGGCTATA+GGG | - | chr5_4:57779208-57779227 | Msa0859440:intron | 45.0% | |
| ! | GCTGTATTGCTATTGCGCAA+TGG | - | chr5_4:57779233-57779252 | Msa0859440:intron | 45.0% |
| GTTATGCCCAATGTCAATCG+TGG | + | chr5_4:57779364-57779383 | None:intergenic | 45.0% | |
| GTCCAAGACTTCAGCAAAAG+TGG | - | chr5_4:57779511-57779530 | Msa0859440:CDS | 45.0% | |
| CTCTAGGTGCTCATTGAACA+CGG | + | chr5_4:57779607-57779626 | None:intergenic | 45.0% | |
| TGTGTGGTGAAATGGCGAAG+TGG | + | chr5_4:57775155-57775174 | None:intergenic | 50.0% | |
| TTGAAGGTGGGGTTTGTGAG+AGG | + | chr5_4:57775188-57775207 | None:intergenic | 50.0% | |
| TTTGTGGGGGTTTGAAGGTG+GGG | + | chr5_4:57775199-57775218 | None:intergenic | 50.0% | |
| CGAAAAGGTCTGGACTTGGA+AGG | - | chr5_4:57775365-57775384 | Msa0859440:intron | 50.0% | |
| GAGTGTCAGACATCGAGACA+CGG | - | chr5_4:57775628-57775647 | Msa0859440:intron | 50.0% | |
| !!! | CTAGTGCTGGCCTTCCTTTT+CGG | - | chr5_4:57776828-57776847 | Msa0859440:CDS | 50.0% |
| GGAGGGCTGCCAATGTATAT+AGG | - | chr5_4:57776998-57777017 | Msa0859440:intron | 50.0% | |
| ! | GGAGGTACAAATACTGTGGG+AGG | + | chr5_4:57777049-57777068 | None:intergenic | 50.0% |
| GTGGTCAGGGGTTATCTTTG+AGG | - | chr5_4:57777185-57777204 | Msa0859440:intron | 50.0% | |
| TGAAGAGATGCCCACCATAC+CGG | - | chr5_4:57777811-57777830 | Msa0859440:CDS | 50.0% | |
| AGACAAAATCAAGGCGCACG+AGG | - | chr5_4:57778725-57778744 | Msa0859440:intron | 50.0% | |
| !! | GTGGTGCTACTAGAGGTTGA+TGG | + | chr5_4:57779386-57779405 | None:intergenic | 50.0% |
| GCGAAGTGGAAGAGTTGCCA+TGG | + | chr5_4:57775141-57775160 | None:intergenic | 55.0% | |
| TCTCCTGAGGTAGCCTTCAC+TGG | - | chr5_4:57778139-57778158 | Msa0859440:intron | 55.0% | |
| CTCCTGAGGTAGCCTTCACT+GGG | - | chr5_4:57778140-57778159 | Msa0859440:intron | 55.0% | |
| TCCTGAGGTAGCCTTCACTG+GGG | - | chr5_4:57778141-57778160 | Msa0859440:intron | 55.0% | |
| TTGGCGTGCATGCTCTACTG+TGG | + | chr5_4:57778643-57778662 | None:intergenic | 55.0% | |
| GTAGAGCATGCACGCCAACA+TGG | - | chr5_4:57778645-57778664 | Msa0859440:intron | 55.0% | |
| !! | GTCTATGGCGCCGGTATGGT+GGG | + | chr5_4:57777824-57777843 | None:intergenic | 60.0% |
| !! | AGTCTATGGCGCCGGTATGG+TGG | + | chr5_4:57777825-57777844 | None:intergenic | 60.0% |
| ACCATACCGGCGCCATAGAC+TGG | - | chr5_4:57777824-57777843 | Msa0859440:intron | 60.0% | |
| CCATACCGGCGCCATAGACT+GGG | - | chr5_4:57777825-57777844 | Msa0859440:intron | 60.0% | |
| ACACACCCAGTCTATGGCGC+CGG | + | chr5_4:57777833-57777852 | None:intergenic | 60.0% | |
| TCCCCAGTGAAGGCTACCTC+AGG | + | chr5_4:57778145-57778164 | None:intergenic | 60.0% | |
| ! | AGGAAGGGCGTGCATGAGAG+AGG | + | chr5_4:57778762-57778781 | None:intergenic | 60.0% |
| !! | CCCAGTCTATGGCGCCGGTA+TGG | + | chr5_4:57777828-57777847 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 57775045 | 57779787 | 57775045 | ID=Msa0859440;Name=Msa0859440 |
| chr5_4 | mRNA | 57775045 | 57779787 | 57775045 | ID=Msa0859440-mRNA-1;Parent=Msa0859440;Name=Msa0859440-mRNA-1;_AED=0.10;_eAED=0.10;_QI=95|1|1|1|1|1|8|216|357 |
| chr5_4 | exon | 57775045 | 57775350 | 57775045 | ID=Msa0859440-mRNA-1:exon:17594;Parent=Msa0859440-mRNA-1 |
| chr5_4 | exon | 57775737 | 57775811 | 57775737 | ID=Msa0859440-mRNA-1:exon:17593;Parent=Msa0859440-mRNA-1 |
| chr5_4 | exon | 57776146 | 57776214 | 57776146 | ID=Msa0859440-mRNA-1:exon:17592;Parent=Msa0859440-mRNA-1 |
| chr5_4 | exon | 57776598 | 57776711 | 57776598 | ID=Msa0859440-mRNA-1:exon:17591;Parent=Msa0859440-mRNA-1 |
| chr5_4 | exon | 57776783 | 57776878 | 57776783 | ID=Msa0859440-mRNA-1:exon:17590;Parent=Msa0859440-mRNA-1 |
| chr5_4 | exon | 57777528 | 57777598 | 57777528 | ID=Msa0859440-mRNA-1:exon:17589;Parent=Msa0859440-mRNA-1 |
| chr5_4 | exon | 57777672 | 57777834 | 57777672 | ID=Msa0859440-mRNA-1:exon:17588;Parent=Msa0859440-mRNA-1 |
| chr5_4 | exon | 57779297 | 57779787 | 57779297 | ID=Msa0859440-mRNA-1:exon:17587;Parent=Msa0859440-mRNA-1 |
| chr5_4 | five_prime_UTR | 57779693 | 57779787 | 57779693 | ID=Msa0859440-mRNA-1:five_prime_utr;Parent=Msa0859440-mRNA-1 |
| chr5_4 | CDS | 57779297 | 57779692 | 57779297 | ID=Msa0859440-mRNA-1:cds;Parent=Msa0859440-mRNA-1 |
| chr5_4 | CDS | 57777672 | 57777834 | 57777672 | ID=Msa0859440-mRNA-1:cds;Parent=Msa0859440-mRNA-1 |
| chr5_4 | CDS | 57777528 | 57777598 | 57777528 | ID=Msa0859440-mRNA-1:cds;Parent=Msa0859440-mRNA-1 |
| chr5_4 | CDS | 57776783 | 57776878 | 57776783 | ID=Msa0859440-mRNA-1:cds;Parent=Msa0859440-mRNA-1 |
| chr5_4 | CDS | 57776598 | 57776711 | 57776598 | ID=Msa0859440-mRNA-1:cds;Parent=Msa0859440-mRNA-1 |
| chr5_4 | CDS | 57776146 | 57776214 | 57776146 | ID=Msa0859440-mRNA-1:cds;Parent=Msa0859440-mRNA-1 |
| chr5_4 | CDS | 57775737 | 57775811 | 57775737 | ID=Msa0859440-mRNA-1:cds;Parent=Msa0859440-mRNA-1 |
| chr5_4 | CDS | 57775261 | 57775350 | 57775261 | ID=Msa0859440-mRNA-1:cds;Parent=Msa0859440-mRNA-1 |
| chr5_4 | three_prime_UTR | 57775045 | 57775260 | 57775045 | ID=Msa0859440-mRNA-1:three_prime_utr;Parent=Msa0859440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
