AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1295470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295470 MtrunA17_Chr8g0372981 98.246 228 2 1 1 228 1 226 9.86e-167 458
Msa1295470 MtrunA17_Chr5g0404551 85.714 196 27 1 33 228 19 213 5.03e-127 357
Msa1295470 MtrunA17_Chr1g0182331 78.505 214 42 2 15 228 7 216 3.48e-123 348
Msa1295470 MtrunA17_Chr8g0345781 80.296 203 39 1 26 228 16 217 5.46e-123 347
Msa1295470 MtrunA17_Chr1g0200691 64.777 247 37 4 8 215 50 285 2.83e-107 310
Msa1295470 MtrunA17_Chr7g0276441 81.818 165 30 0 64 228 29 193 1.99e-99 287
Msa1295470 MtrunA17_Chr1g0210921 48.276 87 40 3 147 228 12 98 4.16e-18 77.4
Msa1295470 MtrunA17_Chr2g0280151 31.696 224 114 9 6 197 33 249 4.78e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295470 AT3G53620.1 80.189 212 38 2 17 228 9 216 8.05e-125 352
Msa1295470 AT1G01050.1 81.000 200 37 1 29 228 14 212 3.27e-123 348
Msa1295470 AT1G01050.2 81.000 200 37 1 29 228 14 212 3.27e-123 348
Msa1295470 AT2G46860.1 75.455 220 48 2 9 228 3 216 3.02e-121 343
Msa1295470 AT2G18230.1 79.500 200 40 1 29 228 20 218 7.51e-119 337
Msa1295470 AT4G01480.1 78.000 200 43 1 29 228 18 216 2.55e-117 333
Msa1295470 AT4G01480.2 78.000 200 43 1 29 228 18 216 2.55e-117 333
Msa1295470 AT5G09650.1 31.937 191 105 6 29 197 72 259 6.16e-17 78.2

Find 65 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTTCACAAAGTGTTCT+TGG 0.212244 8_3:+53645278 None:intergenic
TTCTTGTTCATTGTTGTTAT+TGG 0.218964 8_3:+53646455 None:intergenic
TTCCTTCGTGCCCGTGCTAT+TGG 0.251156 8_3:-53645101 Msa1295470:CDS
CAAGAAAAGTGGACTTATTA+AGG 0.257685 8_3:-53645942 Msa1295470:intron
ACTTAAGGAAGTGACTTCTT+TGG 0.308159 8_3:-53643889 Msa1295470:exon
CCAAGATACTTTAGATGATA+TGG 0.313590 8_3:-53643687 Msa1295470:three_prime_UTR
AAATCATCATCAAGTGAAAA+TGG 0.320291 8_3:-53646481 Msa1295470:exon
TTATTGTAGGTGGTTGAAAT+TGG 0.337416 8_3:-53645995 Msa1295470:intron
CTTTCATTCAACGCAACAAC+TGG 0.383599 8_3:+53646378 None:intergenic
GAAGTGACTTCTTTGGATAC+TGG 0.396871 8_3:-53643882 Msa1295470:exon
CAAAAGATTTAGGCGTCAAT+TGG 0.397892 8_3:+53643752 None:intergenic
CTATATGCTGCTTATGTAGT+TGG 0.409956 8_3:-53643914 Msa1295470:CDS
TGAAATTAGAAGATTCTTTG+AGG 0.414965 8_3:-53644280 Msa1295470:CDS
CTTATGTAGTTGGAAACTTA+AGG 0.419658 8_3:-53643904 Msa1295470:CDS
TCCTTGTAATGGCGGTACTC+AGG 0.424425 8_3:+53644333 None:intergenic
CCATATCATCTAAAGTATCT+TGG 0.427749 8_3:+53643687 None:intergenic
GTTGTCTATCCACATAACTA+TGG 0.433655 8_3:-53645308 Msa1295470:CDS
ACCAGCTGAAGCTGCTGTTA+AGG 0.443366 8_3:-53644062 Msa1295470:CDS
TCGCGCTATGCTACAATGAT+TGG 0.451765 8_3:-53643781 Msa1295470:three_prime_UTR
CCATGGCATGACTTAGAGAT+TGG 0.459125 8_3:-53646312 Msa1295470:intron
GCCTTAACAGCAGCTTCAGC+TGG 0.472264 8_3:+53644061 None:intergenic
ATCCTACCCTCCTGTGGAGG+GGG 0.491826 8_3:+53643614 None:intergenic
AACAAACCGAAGAAAATGAA+TGG 0.492854 8_3:+53646604 None:intergenic
GCTCCTTGATGTCCTTGTAA+TGG 0.493887 8_3:+53644322 None:intergenic
TGAAAGAATACTTTCTTCCA+TGG 0.509143 8_3:-53646361 Msa1295470:CDS
TTAGATGATATGGTAGTGTA+TGG 0.510341 8_3:-53643677 Msa1295470:three_prime_UTR
TTGAAAACAGATGGAGCTCC+TGG 0.514131 8_3:+53646185 None:intergenic
TATGAACTCGACAAGAAAAG+TGG 0.514162 8_3:-53645953 Msa1295470:CDS
CCCTGAGTACCGCCATTACA+AGG 0.516953 8_3:-53644334 Msa1295470:CDS
TTATTACCTGCATCAGAACT+AGG 0.520797 8_3:+53645240 None:intergenic
CTTACACAATTGAAAACAGA+TGG 0.534311 8_3:+53646176 None:intergenic
AGCATCTTTCTTATCAGCCA+TGG 0.534889 8_3:+53646344 None:intergenic
TTGTGAAGATGAAGATCCCT+TGG 0.538327 8_3:-53645267 Msa1295470:CDS
GAATAGGAGCCTGTGATACC+TGG 0.543718 8_3:-53645128 Msa1295470:intron
CCTTGTAATGGCGGTACTCA+GGG 0.545314 8_3:+53644334 None:intergenic
AAGATGCTGCTGCTCATCCA+TGG 0.549543 8_3:-53646329 Msa1295470:CDS
GCTGAATAACGTAGGTTGAT+CGG 0.562129 8_3:-53645346 Msa1295470:intron
AAATCCTACCCTCCTGTGGA+GGG 0.564603 8_3:+53643612 None:intergenic
CCAATCTCTAAGTCATGCCA+TGG 0.565311 8_3:+53646312 None:intergenic
TATCATCTAAAGTATCTTGG+AGG 0.565550 8_3:+53643690 None:intergenic
CAAATCCTACCCTCCTGTGG+AGG 0.566950 8_3:+53643611 None:intergenic
GGAATAAAACCATAGTTATG+TGG 0.568906 8_3:+53645299 None:intergenic
AATCCTGTCACAGGGAGAGA+AGG 0.570938 8_3:-53644388 Msa1295470:intron
GGATGTCCTAGTTCTGATGC+AGG 0.576726 8_3:-53645246 Msa1295470:intron
TTTCAGCAAGCCTGTGTGGA+GGG 0.579237 8_3:+53644298 None:intergenic
AGGAAACAACCAGGTATCAC+AGG 0.592281 8_3:+53645119 None:intergenic
AATCCTACCCTCCTGTGGAG+GGG 0.593419 8_3:+53643613 None:intergenic
AGGCATCAATCCAATAGCAC+GGG 0.596445 8_3:+53645091 None:intergenic
CATCAGAACTAGGACATCCA+AGG 0.602800 8_3:+53645250 None:intergenic
TAGGCATCAATCCAATAGCA+CGG 0.604153 8_3:+53645090 None:intergenic
ATCCAATAGCACGGGCACGA+AGG 0.604284 8_3:+53645099 None:intergenic
CTAATTTCAGCAAGCCTGTG+TGG 0.605088 8_3:+53644294 None:intergenic
TAGGTGGTTGAAATTGGCAA+AGG 0.605186 8_3:-53645989 Msa1295470:CDS
CCGCCATTACAAGGACATCA+AGG 0.609112 8_3:-53644325 Msa1295470:CDS
TCATTCAACGCAACAACTGG+AGG 0.618816 8_3:+53646381 None:intergenic
TTACTGAGATAGTGAAGTAA+CGG 0.622170 8_3:+53646662 None:intergenic
ATTTCAGCAAGCCTGTGTGG+AGG 0.626630 8_3:+53644297 None:intergenic
CCTTGATGTCCTTGTAATGG+CGG 0.630944 8_3:+53644325 None:intergenic
GAACAAAATAGTCAATGTTG+AGG 0.634181 8_3:-53644092 Msa1295470:CDS
ATCAGAACTAGGACATCCAA+GGG 0.638473 8_3:+53645251 None:intergenic
TCAAGGAGCTCCCTCCACAC+AGG 0.645382 8_3:-53644308 Msa1295470:CDS
CGGGCACGAAGGAAACAACC+AGG 0.651968 8_3:+53645110 None:intergenic
AATCAAATCCTACCCTCCTG+TGG 0.662969 8_3:+53643608 None:intergenic
ATTGATGCCTATGATTGACC+AGG 0.665376 8_3:-53645078 Msa1295470:intron
AAACCGAAGAAAATGAATGG+AGG 0.692485 8_3:+53646607 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGGTTATATTTAATGTTT+AGG - chr8_3:53644585-53644604 Msa1295470:intron 15.0%
!! AAAAACAAATCAAAAGATTT+AGG + chr8_3:53646549-53646568 None:intergenic 15.0%
!!! TCAATTTTACATGTTTGTAT+AGG - chr8_3:53643773-53643792 Msa1295470:three_prime_UTR 20.0%
!!! ACCATTATTTTCATAAATTC+AGG - chr8_3:53644079-53644098 Msa1295470:CDS 20.0%
!! TCCTGAATTTATGAAAATAA+TGG + chr8_3:53644083-53644102 None:intergenic 20.0%
!! AAAACTTAGACTGTAAAATA+CGG + chr8_3:53644555-53644574 None:intergenic 20.0%
!!! ATTTTACAGTCTAAGTTTTT+AGG - chr8_3:53644556-53644575 Msa1295470:intron 20.0%
!!! TTGAAACTTGTATTTTGAAT+AGG - chr8_3:53645144-53645163 Msa1295470:intron 20.0%
!! AAAATATCAGATACAATCTA+GGG + chr8_3:53645358-53645377 None:intergenic 20.0%
!! TAAAATATCAGATACAATCT+AGG + chr8_3:53645359-53645378 None:intergenic 20.0%
!! ATAAATCATCTATGAACATA+TGG + chr8_3:53646076-53646095 None:intergenic 20.0%
!! ATGAATCATTTGATCATTAA+TGG + chr8_3:53646305-53646324 None:intergenic 20.0%
! AAATCATCATCAAGTGAAAA+TGG - chr8_3:53643807-53643826 Msa1295470:three_prime_UTR 25.0%
!! TTCTTGTTCATTGTTGTTAT+TGG + chr8_3:53643836-53643855 None:intergenic 25.0%
! ACCATTTACCACATTTATTA+AGG + chr8_3:53644216-53644235 None:intergenic 25.0%
! TAAAATTTCTGTCCCATTAA+TGG - chr8_3:53644254-53644273 Msa1295470:intron 25.0%
! ATTCACTTTACACCATTAAT+GGG + chr8_3:53644269-53644288 None:intergenic 25.0%
! AATTCACTTTACACCATTAA+TGG + chr8_3:53644270-53644289 None:intergenic 25.0%
! AAAGTGAATTCTGTTATTGT+AGG - chr8_3:53644280-53644299 Msa1295470:CDS 25.0%
! ACGATTGAAAAGCTATAATT+GGG + chr8_3:53644388-53644407 None:intergenic 25.0%
! AACGATTGAAAAGCTATAAT+TGG + chr8_3:53644389-53644408 None:intergenic 25.0%
!! TTCATCTGATTCTGAAAATA+TGG - chr8_3:53644412-53644431 Msa1295470:intron 25.0%
! CATTTGATGTGAAAATGTAA+AGG - chr8_3:53644441-53644460 Msa1295470:intron 25.0%
! ATACGTCTTCACATTTAATT+TGG + chr8_3:53644517-53644536 None:intergenic 25.0%
!!! TAAGTTTTTAGGAGTAAGAT+TGG - chr8_3:53644567-53644586 Msa1295470:intron 25.0%
!!! CTAGTTTTAAAGCTAGTTTA+TGG - chr8_3:53645082-53645101 Msa1295470:CDS 25.0%
! TAATCTTCATTTCAAATCAC+AGG + chr8_3:53645330-53645349 None:intergenic 25.0%
! GTAAGGGATTAAAATGTTAA+TGG + chr8_3:53645404-53645423 None:intergenic 25.0%
! CTCTTAAGCTAAAATTGTAA+GGG + chr8_3:53645420-53645439 None:intergenic 25.0%
! ACTCTTAAGCTAAAATTGTA+AGG + chr8_3:53645421-53645440 None:intergenic 25.0%
! TAGCTTAAGAGTAATATGAT+TGG - chr8_3:53645429-53645448 Msa1295470:intron 25.0%
! AAGAGTAATATGATTGGAAT+AGG - chr8_3:53645435-53645454 Msa1295470:intron 25.0%
! TGAAATTAGAAGATTCTTTG+AGG - chr8_3:53646008-53646027 Msa1295470:intron 25.0%
!!! CAATGGTAAAAGCATTTAAA+GGG + chr8_3:53646109-53646128 None:intergenic 25.0%
!!! TCAATGGTAAAAGCATTTAA+AGG + chr8_3:53646110-53646129 None:intergenic 25.0%
TTACTGAGATAGTGAAGTAA+CGG + chr8_3:53643629-53643648 None:intergenic 30.0%
AACAAACCGAAGAAAATGAA+TGG + chr8_3:53643687-53643706 None:intergenic 30.0%
TGAAAGAATACTTTCTTCCA+TGG - chr8_3:53643927-53643946 Msa1295470:intron 30.0%
! ATTTTCATAAATTCAGGACC+AGG - chr8_3:53644085-53644104 Msa1295470:CDS 30.0%
CTTACACAATTGAAAACAGA+TGG + chr8_3:53644115-53644134 None:intergenic 30.0%
AAACGAAGCCTTAATAAATG+TGG - chr8_3:53644205-53644224 Msa1295470:intron 30.0%
GCCTTAATAAATGTGGTAAA+TGG - chr8_3:53644212-53644231 Msa1295470:intron 30.0%
TTATTGTAGGTGGTTGAAAT+TGG - chr8_3:53644293-53644312 Msa1295470:CDS 30.0%
! CAAGAAAAGTGGACTTATTA+AGG - chr8_3:53644346-53644365 Msa1295470:CDS 30.0%
!!! TGTAAAGGCTGTTTCTTTTA+AGG - chr8_3:53644456-53644475 Msa1295470:intron 30.0%
!!! GTAAAGGCTGTTTCTTTTAA+GGG - chr8_3:53644457-53644476 Msa1295470:intron 30.0%
ATTTGGCAGAATTGTAGAAA+TGG + chr8_3:53644500-53644519 None:intergenic 30.0%
!! TTAATGTTTAGGTTGCAAAG+TGG - chr8_3:53644596-53644615 Msa1295470:intron 30.0%
GTTTGATCTATAGTATAGAC+TGG - chr8_3:53644618-53644637 Msa1295470:intron 30.0%
TTTCACAGTTATTGAGCTAT+AGG - chr8_3:53644818-53644837 Msa1295470:intron 30.0%
AAGCATTATCTACATAAAGC+AGG + chr8_3:53644866-53644885 None:intergenic 30.0%
GCTTTATGTAGATAATGCTT+TGG - chr8_3:53644866-53644885 Msa1295470:intron 30.0%
! TCTGAAGCATAACTAACAAA+TGG - chr8_3:53644919-53644938 Msa1295470:intron 30.0%
CTGAAGCATAACTAACAAAT+GGG - chr8_3:53644920-53644939 Msa1295470:intron 30.0%
GGAATAAAACCATAGTTATG+TGG + chr8_3:53644992-53645011 None:intergenic 30.0%
AATTATACTTCAACTCTACG+TGG - chr8_3:53645300-53645319 Msa1295470:CDS 30.0%
! CCATTTTCTTTTACTCTCAT+TGG + chr8_3:53645477-53645496 None:intergenic 30.0%
CCAATGAGAGTAAAAGAAAA+TGG - chr8_3:53645474-53645493 Msa1295470:intron 30.0%
AAATTGTTGCACGCATTATT+TGG - chr8_3:53645505-53645524 Msa1295470:intron 30.0%
TTATTTGGCAATACCATTAG+AGG - chr8_3:53645520-53645539 Msa1295470:intron 30.0%
TATTTGGCAATACCATTAGA+GGG - chr8_3:53645521-53645540 Msa1295470:intron 30.0%
!! ATGCTTTGACTTTTCCAATT+TGG - chr8_3:53645804-53645823 Msa1295470:intron 30.0%
!! TGCTTTGACTTTTCCAATTT+GGG - chr8_3:53645805-53645824 Msa1295470:intron 30.0%
AGTTCTTCATTGCAAATAAC+AGG + chr8_3:53646041-53646060 None:intergenic 30.0%
!! TAAAAGCATTTAAAGGGTCA+TGG + chr8_3:53646103-53646122 None:intergenic 30.0%
AATAGCACTAACAGAATCAA+TGG + chr8_3:53646126-53646145 None:intergenic 30.0%
TAAGGACACACAACATATAT+GGG + chr8_3:53646149-53646168 None:intergenic 30.0%
TTAAGGACACACAACATATA+TGG + chr8_3:53646150-53646169 None:intergenic 30.0%
GAACAAAATAGTCAATGTTG+AGG - chr8_3:53646196-53646215 Msa1295470:intron 30.0%
ATATAGATCCCTGCAAAAAA+GGG + chr8_3:53646360-53646379 None:intergenic 30.0%
CTTATGTAGTTGGAAACTTA+AGG - chr8_3:53646384-53646403 Msa1295470:CDS 30.0%
! TATCATCTAAAGTATCTTGG+AGG + chr8_3:53646601-53646620 None:intergenic 30.0%
! CCATATCATCTAAAGTATCT+TGG + chr8_3:53646604-53646623 None:intergenic 30.0%
CCAAGATACTTTAGATGATA+TGG - chr8_3:53646601-53646620 Msa1295470:intron 30.0%
! TTAGATGATATGGTAGTGTA+TGG - chr8_3:53646611-53646630 Msa1295470:five_prime_UTR 30.0%
! CAACCTCCATTCATTTTCTT+CGG - chr8_3:53643678-53643697 Msa1295470:three_prime_UTR 35.0%
AAACCGAAGAAAATGAATGG+AGG + chr8_3:53643684-53643703 None:intergenic 35.0%
GTGAATTCTGTTATTGTAGG+TGG - chr8_3:53644283-53644302 Msa1295470:CDS 35.0%
TATGAACTCGACAAGAAAAG+TGG - chr8_3:53644335-53644354 Msa1295470:CDS 35.0%
CAATTACTTTGAATGCGTTG+TGG - chr8_3:53644661-53644680 Msa1295470:intron 35.0%
AGCTATGTACTTCAGATTGT+AGG - chr8_3:53644704-53644723 Msa1295470:intron 35.0%
! GTAGATAATGCTTTGGTTTC+TGG - chr8_3:53644873-53644892 Msa1295470:intron 35.0%
GTTGTCTATCCACATAACTA+TGG - chr8_3:53644980-53644999 Msa1295470:intron 35.0%
! TCATCTTCACAAAGTGTTCT+TGG + chr8_3:53645013-53645032 None:intergenic 35.0%
TTATTACCTGCATCAGAACT+AGG + chr8_3:53645051-53645070 None:intergenic 35.0%
! ACTTTTACCTGGTCAATCAT+AGG + chr8_3:53645220-53645239 None:intergenic 35.0%
GAGTAAAAGAAAATGGTGCA+AGG - chr8_3:53645481-53645500 Msa1295470:intron 35.0%
AATACCATTAGAGGGATCAA+CGG - chr8_3:53645529-53645548 Msa1295470:intron 35.0%
AACAGCTTAAGCTTATGAGT+AGG + chr8_3:53645573-53645592 None:intergenic 35.0%
TTTGAATAATGCAACCAGCA+TGG - chr8_3:53645630-53645649 Msa1295470:intron 35.0%
! AGAATGTCTGGTTCATGATT+TGG + chr8_3:53645694-53645713 None:intergenic 35.0%
!! TAGTAAGCTTCTAGAATGTC+TGG + chr8_3:53645706-53645725 None:intergenic 35.0%
ACAGATAAAAGCGAATGCAA+TGG - chr8_3:53645780-53645799 Msa1295470:intron 35.0%
CATATTTCAAGCACCCAAAT+TGG + chr8_3:53645821-53645840 None:intergenic 35.0%
GGAAAAGTTAAAGCATGTCA+TGG + chr8_3:53645872-53645891 None:intergenic 35.0%
TTGTCTAGTGTGGAAAGTTA+AGG + chr8_3:53646167-53646186 None:intergenic 35.0%
TATAGATCCCTGCAAAAAAG+GGG + chr8_3:53646359-53646378 None:intergenic 35.0%
CATATAGATCCCTGCAAAAA+AGG + chr8_3:53646361-53646380 None:intergenic 35.0%
! CTATATGCTGCTTATGTAGT+TGG - chr8_3:53646374-53646393 Msa1295470:CDS 35.0%
ACTTAAGGAAGTGACTTCTT+TGG - chr8_3:53646399-53646418 Msa1295470:CDS 35.0%
CAAAAGATTTAGGCGTCAAT+TGG + chr8_3:53646539-53646558 None:intergenic 35.0%
CTTTCATTCAACGCAACAAC+TGG + chr8_3:53643913-53643932 None:intergenic 40.0%
AGCATCTTTCTTATCAGCCA+TGG + chr8_3:53643947-53643966 None:intergenic 40.0%
TAGGTGGTTGAAATTGGCAA+AGG - chr8_3:53644299-53644318 Msa1295470:CDS 40.0%
GTAAAATACGGTGCTTGCAA+AGG + chr8_3:53644543-53644562 None:intergenic 40.0%
TAACACGATACCAACACATG+AGG - chr8_3:53644740-53644759 Msa1295470:intron 40.0%
!! ACAAATGGGCTGAATAACGT+AGG - chr8_3:53644934-53644953 Msa1295470:intron 40.0%
!! GCTGAATAACGTAGGTTGAT+CGG - chr8_3:53644942-53644961 Msa1295470:intron 40.0%
TTGTGAAGATGAAGATCCCT+TGG - chr8_3:53645021-53645040 Msa1295470:intron 40.0%
ATCAGAACTAGGACATCCAA+GGG + chr8_3:53645040-53645059 None:intergenic 40.0%
TAGGCATCAATCCAATAGCA+CGG + chr8_3:53645201-53645220 None:intergenic 40.0%
ATTGATGCCTATGATTGACC+AGG - chr8_3:53645210-53645229 Msa1295470:intron 40.0%
! AGTGGGAAACAACTTTTACC+TGG + chr8_3:53645231-53645250 None:intergenic 40.0%
TGTGCACAAATACGCATGTA+TGG - chr8_3:53645260-53645279 Msa1295470:CDS 40.0%
ATACCATTAGAGGGATCAAC+GGG - chr8_3:53645530-53645549 Msa1295470:intron 40.0%
GACAAAAGTTTGATCCATGC+TGG + chr8_3:53645647-53645666 None:intergenic 40.0%
CTCATTCTTCTTGTCTAGTG+TGG + chr8_3:53646177-53646196 None:intergenic 40.0%
ACAAAGCATAGTAGCTCACA+TGG + chr8_3:53646264-53646283 None:intergenic 40.0%
!!! TTCTCTTTCCCCTTTTTTGC+AGG - chr8_3:53646348-53646367 Msa1295470:CDS 40.0%
!!! TCTCTTTCCCCTTTTTTGCA+GGG - chr8_3:53646349-53646368 Msa1295470:CDS 40.0%
GAAGTGACTTCTTTGGATAC+TGG - chr8_3:53646406-53646425 Msa1295470:CDS 40.0%
! TTTAAAATTTCCCCCTCCAC+AGG - chr8_3:53646664-53646683 Msa1295470:five_prime_UTR 40.0%
TCATTCAACGCAACAACTGG+AGG + chr8_3:53643910-53643929 None:intergenic 45.0%
CCAATCTCTAAGTCATGCCA+TGG + chr8_3:53643979-53643998 None:intergenic 45.0%
CCATGGCATGACTTAGAGAT+TGG - chr8_3:53643976-53643995 Msa1295470:intron 45.0%
TTGAAAACAGATGGAGCTCC+TGG + chr8_3:53644106-53644125 None:intergenic 45.0%
TTGAATGCAGCCTCATGTGT+TGG + chr8_3:53644753-53644772 None:intergenic 45.0%
CATCAGAACTAGGACATCCA+AGG + chr8_3:53645041-53645060 None:intergenic 45.0%
AGGAAACAACCAGGTATCAC+AGG + chr8_3:53645172-53645191 None:intergenic 45.0%
AGGCATCAATCCAATAGCAC+GGG + chr8_3:53645200-53645219 None:intergenic 45.0%
TTTCCCGTTGATCCCTCTAA+TGG + chr8_3:53645536-53645555 None:intergenic 45.0%
TCCCTTTGAATCCTGTCACA+GGG - chr8_3:53645892-53645911 Msa1295470:intron 45.0%
TCCCTGTGACAGGATTCAAA+GGG + chr8_3:53645896-53645915 None:intergenic 45.0%
CCTTGATGTCCTTGTAATGG+CGG + chr8_3:53645966-53645985 None:intergenic 45.0%
GCTCCTTGATGTCCTTGTAA+TGG + chr8_3:53645969-53645988 None:intergenic 45.0%
CTAATTTCAGCAAGCCTGTG+TGG + chr8_3:53645997-53646016 None:intergenic 45.0%
TCGCGCTATGCTACAATGAT+TGG - chr8_3:53646507-53646526 Msa1295470:intron 45.0%
AAGATGCTGCTGCTCATCCA+TGG - chr8_3:53643959-53643978 Msa1295470:intron 50.0%
!! GGATGTCCTAGTTCTGATGC+AGG - chr8_3:53645042-53645061 Msa1295470:intron 50.0%
GAATAGGAGCCTGTGATACC+TGG - chr8_3:53645160-53645179 Msa1295470:intron 50.0%
CTGTGACAGGATTCAAAGGG+AGG + chr8_3:53645893-53645912 None:intergenic 50.0%
CTCCCTTTGAATCCTGTCAC+AGG - chr8_3:53645891-53645910 Msa1295470:intron 50.0%
CTCCCTGTGACAGGATTCAA+AGG + chr8_3:53645897-53645916 None:intergenic 50.0%
AATCCTGTCACAGGGAGAGA+AGG - chr8_3:53645900-53645919 Msa1295470:intron 50.0%
CCTTGTAATGGCGGTACTCA+GGG + chr8_3:53645957-53645976 None:intergenic 50.0%
TCCTTGTAATGGCGGTACTC+AGG + chr8_3:53645958-53645977 None:intergenic 50.0%
CCGCCATTACAAGGACATCA+AGG - chr8_3:53645963-53645982 Msa1295470:CDS 50.0%
TTTCAGCAAGCCTGTGTGGA+GGG + chr8_3:53645993-53646012 None:intergenic 50.0%
ATTTCAGCAAGCCTGTGTGG+AGG + chr8_3:53645994-53646013 None:intergenic 50.0%
ACCAGCTGAAGCTGCTGTTA+AGG - chr8_3:53646226-53646245 Msa1295470:intron 50.0%
AAAATTTCCCCCTCCACAGG+AGG - chr8_3:53646667-53646686 Msa1295470:five_prime_UTR 50.0%
AAATTTCCCCCTCCACAGGA+GGG - chr8_3:53646668-53646687 Msa1295470:five_prime_UTR 50.0%
AAATCCTACCCTCCTGTGGA+GGG + chr8_3:53646679-53646698 None:intergenic 50.0%
TTCCTTCGTGCCCGTGCTAT+TGG - chr8_3:53645187-53645206 Msa1295470:intron 55.0%
ATCCAATAGCACGGGCACGA+AGG + chr8_3:53645192-53645211 None:intergenic 55.0%
CGTATTTGTGCACAAGCGCG+TGG + chr8_3:53645254-53645273 None:intergenic 55.0%
CATCCTTCTCTCCCTGTGAC+AGG + chr8_3:53645906-53645925 None:intergenic 55.0%
! CCCTGAGTACCGCCATTACA+AGG - chr8_3:53645954-53645973 Msa1295470:CDS 55.0%
GCCTTAACAGCAGCTTCAGC+TGG + chr8_3:53646230-53646249 None:intergenic 55.0%
AATCCTACCCTCCTGTGGAG+GGG + chr8_3:53646678-53646697 None:intergenic 55.0%
CAAATCCTACCCTCCTGTGG+AGG + chr8_3:53646680-53646699 None:intergenic 55.0%
CGGGCACGAAGGAAACAACC+AGG + chr8_3:53645181-53645200 None:intergenic 60.0%
TGTGCACAAGCGCGTGGAGT+GGG + chr8_3:53645248-53645267 None:intergenic 60.0%
TTGTGCACAAGCGCGTGGAG+TGG + chr8_3:53645249-53645268 None:intergenic 60.0%
TCAAGGAGCTCCCTCCACAC+AGG - chr8_3:53645980-53645999 Msa1295470:CDS 60.0%
ATCCTACCCTCCTGTGGAGG+GGG + chr8_3:53646677-53646696 None:intergenic 60.0%
TTCCCCCTCCACAGGAGGGT+AGG - chr8_3:53646672-53646691 Msa1295470:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 53643611 53646699 53643611 ID=Msa1295470;Name=Msa1295470
chr8_3 mRNA 53643611 53646699 53643611 ID=Msa1295470-mRNA-1;Parent=Msa1295470;Name=Msa1295470-mRNA-1;_AED=0.13;_eAED=0.13;_QI=120|1|1|1|0.87|0.77|9|287|228
chr8_3 exon 53643611 53643940 53643611 ID=Msa1295470-mRNA-1:exon:15430;Parent=Msa1295470-mRNA-1
chr8_3 exon 53644046 53644127 53644046 ID=Msa1295470-mRNA-1:exon:15429;Parent=Msa1295470-mRNA-1
chr8_3 exon 53644277 53644397 53644277 ID=Msa1295470-mRNA-1:exon:15428;Parent=Msa1295470-mRNA-1
chr8_3 exon 53645079 53645144 53645079 ID=Msa1295470-mRNA-1:exon:15427;Parent=Msa1295470-mRNA-1
chr8_3 exon 53645247 53645354 53645247 ID=Msa1295470-mRNA-1:exon:15426;Parent=Msa1295470-mRNA-1
chr8_3 exon 53645943 53646008 53645943 ID=Msa1295470-mRNA-1:exon:15425;Parent=Msa1295470-mRNA-1
chr8_3 exon 53646181 53646209 53646181 ID=Msa1295470-mRNA-1:exon:15424;Parent=Msa1295470-mRNA-1
chr8_3 exon 53646313 53646515 53646313 ID=Msa1295470-mRNA-1:exon:15423;Parent=Msa1295470-mRNA-1
chr8_3 exon 53646611 53646699 53646611 ID=Msa1295470-mRNA-1:exon:15422;Parent=Msa1295470-mRNA-1
chr8_3 five_prime_UTR 53646611 53646699 53646611 ID=Msa1295470-mRNA-1:five_prime_utr;Parent=Msa1295470-mRNA-1
chr8_3 five_prime_UTR 53646485 53646515 53646485 ID=Msa1295470-mRNA-1:five_prime_utr;Parent=Msa1295470-mRNA-1
chr8_3 CDS 53646313 53646484 53646313 ID=Msa1295470-mRNA-1:cds;Parent=Msa1295470-mRNA-1
chr8_3 CDS 53646181 53646209 53646181 ID=Msa1295470-mRNA-1:cds;Parent=Msa1295470-mRNA-1
chr8_3 CDS 53645943 53646008 53645943 ID=Msa1295470-mRNA-1:cds;Parent=Msa1295470-mRNA-1
chr8_3 CDS 53645247 53645354 53645247 ID=Msa1295470-mRNA-1:cds;Parent=Msa1295470-mRNA-1
chr8_3 CDS 53645079 53645144 53645079 ID=Msa1295470-mRNA-1:cds;Parent=Msa1295470-mRNA-1
chr8_3 CDS 53644277 53644397 53644277 ID=Msa1295470-mRNA-1:cds;Parent=Msa1295470-mRNA-1
chr8_3 CDS 53644046 53644127 53644046 ID=Msa1295470-mRNA-1:cds;Parent=Msa1295470-mRNA-1
chr8_3 CDS 53643898 53643940 53643898 ID=Msa1295470-mRNA-1:cds;Parent=Msa1295470-mRNA-1
chr8_3 three_prime_UTR 53643611 53643897 53643611 ID=Msa1295470-mRNA-1:three_prime_utr;Parent=Msa1295470-mRNA-1
Gene Sequence

>Msa1295470

ATGGCTACCAATAACAACAATGAACAAGAATCAAAAAAAGCAACTCATTCTTCTTCTTCTACTGCTTCTAAGATTGAGTTACCTCCAGTTGTTGCGTTGAATGAAAGAATACTTTCTTCCATGGCTGATAAGAAAGATGCTGCTGCTCATCCATGGCATGACTTAGAGATTGGACCAGGAGCTCCATCTGTTTTCAATTGTGTGGTTGAAATTGGCAAAGGAAGCAAAGTTAAGTATGAACTCGACAAGAAAAGTGGACTTATTAAGGTTGATCGGATTCTTTACTCATCAGTTGTCTATCCACATAACTATGGTTTTATTCCAAGAACACTTTGTGAAGATGAAGATCCCTTGGATGTCCTAGTTCTGATGCAGGAGCCTGTGATACCTGGTTGTTTCCTTCGTGCCCGTGCTATTGGATTGATGCCTATGATTGACCAGGGAGAGAAGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTACCGCCATTACAAGGACATCAAGGAGCTCCCTCCACACAGGCTTGCTGAAATTAGAAGATTCTTTGAGGACTACAAGAAGAATGAGAACAAAATAGTCAATGTTGAGGACTTTCTACCAGCTGAAGCTGCTGTTAAGGCTATTGAACACTCCATGGATCTATATGCTGCTTATGTAGTTGGAAACTTAAGGAAGTGA

Protein sequence

>Msa1295470

MATNNNNEQESKKATHSSSSTASKIELPPVVALNERILSSMADKKDAAAHPWHDLEIGPGAPSVFNCVVEIGKGSKVKYELDKKSGLIKVDRILYSSVVYPHNYGFIPRTLCEDEDPLDVLVLMQEPVIPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYKDIKELPPHRLAEIRRFFEDYKKNENKIVNVEDFLPAEAAVKAIEHSMDLYAAYVVGNLRK*