AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0012380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012380 MtrunA17_Chr1g0160901 88.043 184 16 1 1 178 1 184 5.66e-111 313
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012380 AT2G01590.1 41.304 138 71 3 43 178 45 174 7.57e-30 108
Msa0012380 AT2G01590.2 41.304 138 71 3 43 178 45 174 7.90e-30 108

Find 60 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATGGATGATGCCAATT+TGG 0.179324 1_1:+18573904 Msa0012380:CDS
AAGGAGGAGAATCTGGGTTT+TGG 0.221469 1_1:-18572120 None:intergenic
GGAGAGTGGCTGGGTGAAAA+TGG 0.232098 1_1:+18572568 Msa0012380:CDS
GAAGAAGAAGGAGGAGAATC+TGG 0.270359 1_1:-18572127 None:intergenic
TGATGACTCCAGAAGCTATT+AGG 0.284836 1_1:-18573938 None:intergenic
TGGAGGAAGATTGGTTTGTT+TGG 0.288556 1_1:-18572152 None:intergenic
GGTCGACGGGGAAGCTTGTT+TGG 0.309086 1_1:-18572223 None:intergenic
TCAATGGATGATGCCAATTT+GGG 0.342444 1_1:+18573905 Msa0012380:CDS
AGGAATGATATGGCCCAAAT+TGG 0.351556 1_1:-18573918 None:intergenic
GGAGGAAGATTGGTTTGTTT+GGG 0.355312 1_1:-18572151 None:intergenic
CTGGACTATTATATAAATTA+CGG 0.362928 1_1:+18574175 Msa0012380:three_prime_UTR
GACCACGATGGATTTGTTCT+TGG 0.365556 1_1:+18572501 Msa0012380:CDS
TGTTGCAGGAAGAGGAATTC+TGG 0.376018 1_1:+18573872 Msa0012380:intron
TAATGAAGTAGTGGAGTTCT+TGG 0.377298 1_1:-18572197 None:intergenic
ACCACGATGGATTTGTTCTT+GGG 0.379690 1_1:+18572502 Msa0012380:CDS
AGAAGCTATTAGGAATGATA+TGG 0.381051 1_1:-18573928 None:intergenic
GAGAGTGGCTGGGTGAAAAT+GGG 0.391269 1_1:+18572569 Msa0012380:CDS
GGTGTTAGTGGAGCGAAATC+TGG 0.391808 1_1:-18572596 None:intergenic
ATTAGTAATAAGAATGGGTT+TGG 0.396058 1_1:-18572086 None:intergenic
TTCTGGTGTTTGCATTTCAA+TGG 0.404184 1_1:+18573889 Msa0012380:CDS
TTGCTACTTACTGGTGTTAG+TGG 0.422960 1_1:-18572608 None:intergenic
CGAAGATGGTGATGGTCGAC+GGG 0.447807 1_1:-18572236 None:intergenic
GAGGGAAACAGGAGAGTGGC+TGG 0.452230 1_1:+18572558 Msa0012380:CDS
TCAATTTGCATGAGCGAAGA+TGG 0.459616 1_1:-18572250 None:intergenic
AGAAGGAGGTCATCAAGAAA+AGG 0.462888 1_1:-18573978 None:intergenic
ATATCATTCCTAATAGCTTC+TGG 0.464043 1_1:+18573930 Msa0012380:CDS
AAGAAGAAGGAGGAGAATCT+GGG 0.467707 1_1:-18572126 None:intergenic
GTTGCATTAGTAATAAGAAT+GGG 0.473568 1_1:-18572091 None:intergenic
GTTTGTTTGGGTGAAGAAGA+AGG 0.476332 1_1:-18572139 None:intergenic
AGTTGCATTAGTAATAAGAA+TGG 0.478851 1_1:-18572092 None:intergenic
TTCTTGGGACAAGTATTTGA+AGG 0.485835 1_1:+18572517 Msa0012380:CDS
ATTGAACGTGCCCTTGGCGC+TGG 0.500974 1_1:+18572268 Msa0012380:CDS
TCAAGAAAAGGGACACTGAA+TGG 0.508495 1_1:-18573966 None:intergenic
ATGCAAATTGAACGTGCCCT+TGG 0.511985 1_1:+18572262 Msa0012380:CDS
GAATAATTGTAAATTACTCA+AGG 0.515784 1_1:+18574029 Msa0012380:three_prime_UTR
GACAGAGCATACTTGAGGTC+AGG 0.519678 1_1:-18572310 None:intergenic
CTCTGAAGCTACCAGCGCCA+AGG 0.529782 1_1:-18572279 None:intergenic
GAAGGAGGTCATCAAGAAAA+GGG 0.531359 1_1:-18573977 None:intergenic
AATAATTGTAAATTACTCAA+GGG 0.533538 1_1:+18574030 Msa0012380:three_prime_UTR
GCGAAGATGGTGATGGTCGA+CGG 0.545160 1_1:-18572237 None:intergenic
AAATTACTCAAGGGGTTCAA+AGG 0.547210 1_1:+18574039 Msa0012380:three_prime_UTR
TCTTGGGACAAGTATTTGAA+GGG 0.567555 1_1:+18572518 Msa0012380:CDS
GAGTTCTTGGATCTTAGTGA+AGG 0.568920 1_1:-18572184 None:intergenic
CGACGGGGAAGCTTGTTTGG+AGG 0.576924 1_1:-18572220 None:intergenic
ATAATTGTAAATTACTCAAG+GGG 0.580033 1_1:+18574031 Msa0012380:three_prime_UTR
AACTGGATGTTCACAGAAGG+AGG 0.580320 1_1:-18573992 None:intergenic
AGAGTGGCTGGGTGAAAATG+GGG 0.590303 1_1:+18572570 Msa0012380:CDS
TCTGAAGCTACCAGCGCCAA+GGG 0.590855 1_1:-18572278 None:intergenic
GTTTGGAGGTAATGAAGTAG+TGG 0.605102 1_1:-18572206 None:intergenic
AGAAACTGGATGTTCACAGA+AGG 0.608792 1_1:-18573995 None:intergenic
TGTTTGGGTGAAGAAGAAGG+AGG 0.610626 1_1:-18572136 None:intergenic
AGGGAAACAGGAGAGTGGCT+GGG 0.620803 1_1:+18572559 Msa0012380:CDS
GGCGCTGGTAGCTTCAGAGA+CGG 0.635842 1_1:+18572283 Msa0012380:CDS
CATAAGCAAAACATTGCAGA+GGG 0.641080 1_1:-18572046 None:intergenic
GCATAAGCAAAACATTGCAG+AGG 0.658841 1_1:-18572047 None:intergenic
AGCTGAGGGAAACAGGAGAG+TGG 0.671817 1_1:+18572554 Msa0012380:CDS
GAAGATGGTGATGGTCGACG+GGG 0.719959 1_1:-18572235 None:intergenic
TGCATGAGCGAAGATGGTGA+TGG 0.732147 1_1:-18572244 None:intergenic
TCCCAAGAACAAATCCATCG+TGG 0.736351 1_1:-18572503 None:intergenic
AGACGTAAAGAAGACCACGA+TGG 0.745068 1_1:+18572489 Msa0012380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTGAATAAATAATAAATAA+AGG - chr1_1:18573843-18573862 None:intergenic 10.0%
!! ACTGAATAAATAATAAATAA+AGG - chr1_1:18573843-18573862 None:intergenic 10.0%
!! ATTATAACATTATGATGAAT+AGG + chr1_1:18572363-18572382 Msa0012380:intron 15.0%
!!! TTGTTTTTTAAATAAGAAAC+TGG + chr1_1:18572800-18572819 Msa0012380:intron 15.0%
!! AATAATTGTAAATTACTCAA+GGG + chr1_1:18574030-18574049 Msa0012380:three_prime_UTR 15.0%
!! CCAGTAATAAAAATAATATA+TGG - chr1_1:18574159-18574178 None:intergenic 15.0%
!!! CCATATATTATTTTTATTAC+TGG + chr1_1:18574156-18574175 Msa0012380:three_prime_UTR 15.0%
!! ATTATAACATTATGATGAAT+AGG + chr1_1:18572363-18572382 Msa0012380:intron 15.0%
!!! TTGTTTTTTAAATAAGAAAC+TGG + chr1_1:18572800-18572819 Msa0012380:intron 15.0%
!! AATAATTGTAAATTACTCAA+GGG + chr1_1:18574030-18574049 Msa0012380:three_prime_UTR 15.0%
!! CCAGTAATAAAAATAATATA+TGG - chr1_1:18574159-18574178 None:intergenic 15.0%
!!! CCATATATTATTTTTATTAC+TGG + chr1_1:18574156-18574175 Msa0012380:three_prime_UTR 15.0%
!!! CACTTTTAACATTATGAAAT+TGG - chr1_1:18572405-18572424 None:intergenic 20.0%
!! TGTTAAAGAGACAAAAAATA+CGG - chr1_1:18572653-18572672 None:intergenic 20.0%
!!! TATTTTTTGTCTCTTTAACA+AGG + chr1_1:18572653-18572672 Msa0012380:intron 20.0%
!! GACTTTCTTGAAAAAATAAT+TGG - chr1_1:18573455-18573474 None:intergenic 20.0%
!! TAGAAAATTACAATGTTAAG+TGG - chr1_1:18573789-18573808 None:intergenic 20.0%
!! GAATAATTGTAAATTACTCA+AGG + chr1_1:18574029-18574048 Msa0012380:three_prime_UTR 20.0%
!! ATAATTGTAAATTACTCAAG+GGG + chr1_1:18574031-18574050 Msa0012380:three_prime_UTR 20.0%
!! ATTTAATAGTAAAAACACGT+TGG + chr1_1:18574081-18574100 Msa0012380:three_prime_UTR 20.0%
!! CTGGACTATTATATAAATTA+CGG + chr1_1:18574175-18574194 Msa0012380:three_prime_UTR 20.0%
!!! CACTTTTAACATTATGAAAT+TGG - chr1_1:18572405-18572424 None:intergenic 20.0%
!! TGTTAAAGAGACAAAAAATA+CGG - chr1_1:18572653-18572672 None:intergenic 20.0%
!!! TATTTTTTGTCTCTTTAACA+AGG + chr1_1:18572653-18572672 Msa0012380:intron 20.0%
!! GACTTTCTTGAAAAAATAAT+TGG - chr1_1:18573455-18573474 None:intergenic 20.0%
!! TAGAAAATTACAATGTTAAG+TGG - chr1_1:18573789-18573808 None:intergenic 20.0%
!! GAATAATTGTAAATTACTCA+AGG + chr1_1:18574029-18574048 Msa0012380:three_prime_UTR 20.0%
!! ATAATTGTAAATTACTCAAG+GGG + chr1_1:18574031-18574050 Msa0012380:three_prime_UTR 20.0%
!! ATTTAATAGTAAAAACACGT+TGG + chr1_1:18574081-18574100 Msa0012380:three_prime_UTR 20.0%
!! CTGGACTATTATATAAATTA+CGG + chr1_1:18574175-18574194 Msa0012380:three_prime_UTR 20.0%
!! ATTAGTAATAAGAATGGGTT+TGG - chr1_1:18572089-18572108 None:intergenic 25.0%
! GTTGCATTAGTAATAAGAAT+GGG - chr1_1:18572094-18572113 None:intergenic 25.0%
! AGTTGCATTAGTAATAAGAA+TGG - chr1_1:18572095-18572114 None:intergenic 25.0%
! ATCAAAATCCAGAATGAAAT+TGG - chr1_1:18572430-18572449 None:intergenic 25.0%
! AGATTATTACTTCTTACAAC+TGG - chr1_1:18572858-18572877 None:intergenic 25.0%
! GTTGTAAGAAGTAATAATCT+TGG + chr1_1:18572858-18572877 Msa0012380:intron 25.0%
!!! ACTTCAGAGTAAGTTTTATT+TGG - chr1_1:18572943-18572962 None:intergenic 25.0%
!!! ATAAAACTTACTCTGAAGTT+TGG + chr1_1:18572944-18572963 Msa0012380:intron 25.0%
! AAATAATTGGTCACACAATA+CGG - chr1_1:18573442-18573461 None:intergenic 25.0%
! AAGGAATAAAATGACTTTCT+TGG - chr1_1:18573635-18573654 None:intergenic 25.0%
! TGCTACAATTCAAAAAATGT+TGG - chr1_1:18573753-18573772 None:intergenic 25.0%
!! TTGAATTGTAGCATATTTTG+CGG + chr1_1:18573760-18573779 Msa0012380:intron 25.0%
! TTCAATCTACAAAAAGAAAC+TGG - chr1_1:18574012-18574031 None:intergenic 25.0%
!! ATTAGTAATAAGAATGGGTT+TGG - chr1_1:18572089-18572108 None:intergenic 25.0%
! GTTGCATTAGTAATAAGAAT+GGG - chr1_1:18572094-18572113 None:intergenic 25.0%
! AGTTGCATTAGTAATAAGAA+TGG - chr1_1:18572095-18572114 None:intergenic 25.0%
! ATCAAAATCCAGAATGAAAT+TGG - chr1_1:18572430-18572449 None:intergenic 25.0%
! AGATTATTACTTCTTACAAC+TGG - chr1_1:18572858-18572877 None:intergenic 25.0%
! GTTGTAAGAAGTAATAATCT+TGG + chr1_1:18572858-18572877 Msa0012380:intron 25.0%
!!! ACTTCAGAGTAAGTTTTATT+TGG - chr1_1:18572943-18572962 None:intergenic 25.0%
!!! ATAAAACTTACTCTGAAGTT+TGG + chr1_1:18572944-18572963 Msa0012380:intron 25.0%
! AAATAATTGGTCACACAATA+CGG - chr1_1:18573442-18573461 None:intergenic 25.0%
! AAGGAATAAAATGACTTTCT+TGG - chr1_1:18573635-18573654 None:intergenic 25.0%
! TGCTACAATTCAAAAAATGT+TGG - chr1_1:18573753-18573772 None:intergenic 25.0%
!! TTGAATTGTAGCATATTTTG+CGG + chr1_1:18573760-18573779 Msa0012380:intron 25.0%
! TTCAATCTACAAAAAGAAAC+TGG - chr1_1:18574012-18574031 None:intergenic 25.0%
!! CATGTCTTTTGCTTTGTTAT+AGG + chr1_1:18572683-18572702 Msa0012380:intron 30.0%
!! TTTTATTTGGAGACAAGCAA+TGG - chr1_1:18572930-18572949 None:intergenic 30.0%
! TATCTAGTTCAAACACTACA+TGG + chr1_1:18573062-18573081 Msa0012380:intron 30.0%
ATGATGTCTCATATTGTTGA+GGG - chr1_1:18573147-18573166 None:intergenic 30.0%
! ATGTTGGTAAATGAAAGAGT+GGG - chr1_1:18573737-18573756 None:intergenic 30.0%
! AATGTTGGTAAATGAAAGAG+TGG - chr1_1:18573738-18573757 None:intergenic 30.0%
AGAAGCTATTAGGAATGATA+TGG - chr1_1:18573931-18573950 None:intergenic 30.0%
ATATCATTCCTAATAGCTTC+TGG + chr1_1:18573930-18573949 Msa0012380:CDS 30.0%
!! CATGTCTTTTGCTTTGTTAT+AGG + chr1_1:18572683-18572702 Msa0012380:intron 30.0%
!! TTTTATTTGGAGACAAGCAA+TGG - chr1_1:18572930-18572949 None:intergenic 30.0%
! TATCTAGTTCAAACACTACA+TGG + chr1_1:18573062-18573081 Msa0012380:intron 30.0%
ATGATGTCTCATATTGTTGA+GGG - chr1_1:18573147-18573166 None:intergenic 30.0%
! ATGTTGGTAAATGAAAGAGT+GGG - chr1_1:18573737-18573756 None:intergenic 30.0%
! AATGTTGGTAAATGAAAGAG+TGG - chr1_1:18573738-18573757 None:intergenic 30.0%
AGAAGCTATTAGGAATGATA+TGG - chr1_1:18573931-18573950 None:intergenic 30.0%
ATATCATTCCTAATAGCTTC+TGG + chr1_1:18573930-18573949 Msa0012380:CDS 30.0%
CATAAGCAAAACATTGCAGA+GGG - chr1_1:18572049-18572068 None:intergenic 35.0%
!!! TTTTTGCTTTGGAGGAAGAT+TGG - chr1_1:18572164-18572183 None:intergenic 35.0%
! CTTAGTGAAGGTTTTTGCTT+TGG - chr1_1:18572175-18572194 None:intergenic 35.0%
! TAATGAAGTAGTGGAGTTCT+TGG - chr1_1:18572200-18572219 None:intergenic 35.0%
! AAAGTGCTCCAATTTCATTC+TGG + chr1_1:18572419-18572438 Msa0012380:intron 35.0%
TTCTTGGGACAAGTATTTGA+AGG + chr1_1:18572517-18572536 Msa0012380:CDS 35.0%
TCTTGGGACAAGTATTTGAA+GGG + chr1_1:18572518-18572537 Msa0012380:CDS 35.0%
GTTATAGGTGATTATGAGTG+AGG + chr1_1:18572698-18572717 Msa0012380:intron 35.0%
GTGAGGAAAAACACAAGTTA+TGG + chr1_1:18572715-18572734 Msa0012380:intron 35.0%
AAGGATGATGCTTTCAAACT+AGG - chr1_1:18573010-18573029 None:intergenic 35.0%
!! TAGTTTGAAAGCATCATCCT+TGG + chr1_1:18573009-18573028 Msa0012380:intron 35.0%
!! AGTTTGAAAGCATCATCCTT+GGG + chr1_1:18573010-18573029 Msa0012380:intron 35.0%
AGATCTTGTTCTTAATCCCA+AGG - chr1_1:18573029-18573048 None:intergenic 35.0%
GAACAAGATCTACAAGTCTT+AGG + chr1_1:18573038-18573057 Msa0012380:intron 35.0%
GATGATGTCTCATATTGTTG+AGG - chr1_1:18573148-18573167 None:intergenic 35.0%
TTCAAGTGTAATGTAGACAC+AGG - chr1_1:18573252-18573271 None:intergenic 35.0%
TGTGTCTACATTACACTTGA+AGG + chr1_1:18573251-18573270 Msa0012380:intron 35.0%
TTACACTTGAAGGATCATGA+TGG + chr1_1:18573261-18573280 Msa0012380:intron 35.0%
ATTTGAGGGCTTACTACAAA+GGG - chr1_1:18573400-18573419 None:intergenic 35.0%
AATTTGAGGGCTTACTACAA+AGG - chr1_1:18573401-18573420 None:intergenic 35.0%
AGGAATCTGCTAGAATTTGA+GGG - chr1_1:18573414-18573433 None:intergenic 35.0%
!! TTTTCAAGAAAGTCAGACCA+AGG + chr1_1:18573461-18573480 Msa0012380:intron 35.0%
! GACAAACATCCAAACTGTTT+TGG + chr1_1:18573594-18573613 Msa0012380:intron 35.0%
GCTAATGGTAGAGATATGAA+AGG - chr1_1:18573654-18573673 None:intergenic 35.0%
TTATCTTGAGGATTTCCTAC+AGG - chr1_1:18573680-18573699 None:intergenic 35.0%
AGGAAATCCTCAAGATAACT+TGG + chr1_1:18573682-18573701 Msa0012380:intron 35.0%
AAATCCTCAAGATAACTTGG+AGG + chr1_1:18573685-18573704 Msa0012380:intron 35.0%
AATCCTCAAGATAACTTGGA+GGG + chr1_1:18573686-18573705 Msa0012380:intron 35.0%
TCAGTGATTTAAACTGTTGC+AGG + chr1_1:18573858-18573877 Msa0012380:intron 35.0%
ATTTAAACTGTTGCAGGAAG+AGG + chr1_1:18573864-18573883 Msa0012380:intron 35.0%
TTCTGGTGTTTGCATTTCAA+TGG + chr1_1:18573889-18573908 Msa0012380:CDS 35.0%
TTCAATGGATGATGCCAATT+TGG + chr1_1:18573904-18573923 Msa0012380:CDS 35.0%
TCAATGGATGATGCCAATTT+GGG + chr1_1:18573905-18573924 Msa0012380:CDS 35.0%
AAATTACTCAAGGGGTTCAA+AGG + chr1_1:18574039-18574058 Msa0012380:three_prime_UTR 35.0%
CATAAGCAAAACATTGCAGA+GGG - chr1_1:18572049-18572068 None:intergenic 35.0%
!!! TTTTTGCTTTGGAGGAAGAT+TGG - chr1_1:18572164-18572183 None:intergenic 35.0%
! CTTAGTGAAGGTTTTTGCTT+TGG - chr1_1:18572175-18572194 None:intergenic 35.0%
! TAATGAAGTAGTGGAGTTCT+TGG - chr1_1:18572200-18572219 None:intergenic 35.0%
! AAAGTGCTCCAATTTCATTC+TGG + chr1_1:18572419-18572438 Msa0012380:intron 35.0%
TTCTTGGGACAAGTATTTGA+AGG + chr1_1:18572517-18572536 Msa0012380:CDS 35.0%
TCTTGGGACAAGTATTTGAA+GGG + chr1_1:18572518-18572537 Msa0012380:CDS 35.0%
GTTATAGGTGATTATGAGTG+AGG + chr1_1:18572698-18572717 Msa0012380:intron 35.0%
GTGAGGAAAAACACAAGTTA+TGG + chr1_1:18572715-18572734 Msa0012380:intron 35.0%
AAGGATGATGCTTTCAAACT+AGG - chr1_1:18573010-18573029 None:intergenic 35.0%
!! TAGTTTGAAAGCATCATCCT+TGG + chr1_1:18573009-18573028 Msa0012380:intron 35.0%
!! AGTTTGAAAGCATCATCCTT+GGG + chr1_1:18573010-18573029 Msa0012380:intron 35.0%
AGATCTTGTTCTTAATCCCA+AGG - chr1_1:18573029-18573048 None:intergenic 35.0%
GAACAAGATCTACAAGTCTT+AGG + chr1_1:18573038-18573057 Msa0012380:intron 35.0%
GATGATGTCTCATATTGTTG+AGG - chr1_1:18573148-18573167 None:intergenic 35.0%
TTCAAGTGTAATGTAGACAC+AGG - chr1_1:18573252-18573271 None:intergenic 35.0%
TGTGTCTACATTACACTTGA+AGG + chr1_1:18573251-18573270 Msa0012380:intron 35.0%
TTACACTTGAAGGATCATGA+TGG + chr1_1:18573261-18573280 Msa0012380:intron 35.0%
ATTTGAGGGCTTACTACAAA+GGG - chr1_1:18573400-18573419 None:intergenic 35.0%
AATTTGAGGGCTTACTACAA+AGG - chr1_1:18573401-18573420 None:intergenic 35.0%
AGGAATCTGCTAGAATTTGA+GGG - chr1_1:18573414-18573433 None:intergenic 35.0%
!! TTTTCAAGAAAGTCAGACCA+AGG + chr1_1:18573461-18573480 Msa0012380:intron 35.0%
! GACAAACATCCAAACTGTTT+TGG + chr1_1:18573594-18573613 Msa0012380:intron 35.0%
GCTAATGGTAGAGATATGAA+AGG - chr1_1:18573654-18573673 None:intergenic 35.0%
TTATCTTGAGGATTTCCTAC+AGG - chr1_1:18573680-18573699 None:intergenic 35.0%
AGGAAATCCTCAAGATAACT+TGG + chr1_1:18573682-18573701 Msa0012380:intron 35.0%
AAATCCTCAAGATAACTTGG+AGG + chr1_1:18573685-18573704 Msa0012380:intron 35.0%
AATCCTCAAGATAACTTGGA+GGG + chr1_1:18573686-18573705 Msa0012380:intron 35.0%
TCAGTGATTTAAACTGTTGC+AGG + chr1_1:18573858-18573877 Msa0012380:intron 35.0%
ATTTAAACTGTTGCAGGAAG+AGG + chr1_1:18573864-18573883 Msa0012380:intron 35.0%
TTCTGGTGTTTGCATTTCAA+TGG + chr1_1:18573889-18573908 Msa0012380:CDS 35.0%
TTCAATGGATGATGCCAATT+TGG + chr1_1:18573904-18573923 Msa0012380:CDS 35.0%
TCAATGGATGATGCCAATTT+GGG + chr1_1:18573905-18573924 Msa0012380:CDS 35.0%
AAATTACTCAAGGGGTTCAA+AGG + chr1_1:18574039-18574058 Msa0012380:three_prime_UTR 35.0%
GCATAAGCAAAACATTGCAG+AGG - chr1_1:18572050-18572069 None:intergenic 40.0%
AAGAAGAAGGAGGAGAATCT+GGG - chr1_1:18572129-18572148 None:intergenic 40.0%
GTTTGTTTGGGTGAAGAAGA+AGG - chr1_1:18572142-18572161 None:intergenic 40.0%
!! GGAGGAAGATTGGTTTGTTT+GGG - chr1_1:18572154-18572173 None:intergenic 40.0%
!! TGGAGGAAGATTGGTTTGTT+TGG - chr1_1:18572155-18572174 None:intergenic 40.0%
! AGTGAAGGTTTTTGCTTTGG+AGG - chr1_1:18572172-18572191 None:intergenic 40.0%
GAGTTCTTGGATCTTAGTGA+AGG - chr1_1:18572187-18572206 None:intergenic 40.0%
GTTTGGAGGTAATGAAGTAG+TGG - chr1_1:18572209-18572228 None:intergenic 40.0%
TCAATTTGCATGAGCGAAGA+TGG - chr1_1:18572253-18572272 None:intergenic 40.0%
AAACAGACAGAGCATACTTG+AGG - chr1_1:18572318-18572337 None:intergenic 40.0%
! ACCACGATGGATTTGTTCTT+GGG + chr1_1:18572502-18572521 Msa0012380:CDS 40.0%
! TTGCTACTTACTGGTGTTAG+TGG - chr1_1:18572611-18572630 None:intergenic 40.0%
ACAGAATTGGTGAGAACCTT+TGG - chr1_1:18573222-18573241 None:intergenic 40.0%
TTTGACCATTGTCCAACCAA+GGG + chr1_1:18573324-18573343 Msa0012380:intron 40.0%
TTTGAGGGCTTACTACAAAG+GGG - chr1_1:18573399-18573418 None:intergenic 40.0%
GAGGAATCTGCTAGAATTTG+AGG - chr1_1:18573415-18573434 None:intergenic 40.0%
AATTGGTCACACAATACGGA+GGG - chr1_1:18573438-18573457 None:intergenic 40.0%
TAATTGGTCACACAATACGG+AGG - chr1_1:18573439-18573458 None:intergenic 40.0%
ATGTTGTCGAGGAATGTTCA+AGG - chr1_1:18573498-18573517 None:intergenic 40.0%
TTCCTCGACAACATAGAATC+CGG + chr1_1:18573504-18573523 Msa0012380:intron 40.0%
ACCTTCAACATAGCAAATCC+TGG - chr1_1:18573558-18573577 None:intergenic 40.0%
!!! ACATCCAAACTGTTTTGGCA+TGG + chr1_1:18573599-18573618 Msa0012380:intron 40.0%
CTATCCATGCCAAAACAGTT+TGG - chr1_1:18573606-18573625 None:intergenic 40.0%
! ATTTCCTACAGGTTGGCTAA+TGG - chr1_1:18573669-18573688 None:intergenic 40.0%
ATACCCTCCAAGTTATCTTG+AGG - chr1_1:18573692-18573711 None:intergenic 40.0%
AGGAATGATATGGCCCAAAT+TGG - chr1_1:18573921-18573940 None:intergenic 40.0%
TGATGACTCCAGAAGCTATT+AGG - chr1_1:18573941-18573960 None:intergenic 40.0%
TCAAGAAAAGGGACACTGAA+TGG - chr1_1:18573969-18573988 None:intergenic 40.0%
GAAGGAGGTCATCAAGAAAA+GGG - chr1_1:18573980-18573999 None:intergenic 40.0%
AGAAGGAGGTCATCAAGAAA+AGG - chr1_1:18573981-18574000 None:intergenic 40.0%
AGAAACTGGATGTTCACAGA+AGG - chr1_1:18573998-18574017 None:intergenic 40.0%
GCATAAGCAAAACATTGCAG+AGG - chr1_1:18572050-18572069 None:intergenic 40.0%
AAGAAGAAGGAGGAGAATCT+GGG - chr1_1:18572129-18572148 None:intergenic 40.0%
GTTTGTTTGGGTGAAGAAGA+AGG - chr1_1:18572142-18572161 None:intergenic 40.0%
!! GGAGGAAGATTGGTTTGTTT+GGG - chr1_1:18572154-18572173 None:intergenic 40.0%
!! TGGAGGAAGATTGGTTTGTT+TGG - chr1_1:18572155-18572174 None:intergenic 40.0%
! AGTGAAGGTTTTTGCTTTGG+AGG - chr1_1:18572172-18572191 None:intergenic 40.0%
GAGTTCTTGGATCTTAGTGA+AGG - chr1_1:18572187-18572206 None:intergenic 40.0%
GTTTGGAGGTAATGAAGTAG+TGG - chr1_1:18572209-18572228 None:intergenic 40.0%
TCAATTTGCATGAGCGAAGA+TGG - chr1_1:18572253-18572272 None:intergenic 40.0%
AAACAGACAGAGCATACTTG+AGG - chr1_1:18572318-18572337 None:intergenic 40.0%
! ACCACGATGGATTTGTTCTT+GGG + chr1_1:18572502-18572521 Msa0012380:CDS 40.0%
! TTGCTACTTACTGGTGTTAG+TGG - chr1_1:18572611-18572630 None:intergenic 40.0%
ACAGAATTGGTGAGAACCTT+TGG - chr1_1:18573222-18573241 None:intergenic 40.0%
TTTGACCATTGTCCAACCAA+GGG + chr1_1:18573324-18573343 Msa0012380:intron 40.0%
TTTGAGGGCTTACTACAAAG+GGG - chr1_1:18573399-18573418 None:intergenic 40.0%
GAGGAATCTGCTAGAATTTG+AGG - chr1_1:18573415-18573434 None:intergenic 40.0%
AATTGGTCACACAATACGGA+GGG - chr1_1:18573438-18573457 None:intergenic 40.0%
TAATTGGTCACACAATACGG+AGG - chr1_1:18573439-18573458 None:intergenic 40.0%
ATGTTGTCGAGGAATGTTCA+AGG - chr1_1:18573498-18573517 None:intergenic 40.0%
TTCCTCGACAACATAGAATC+CGG + chr1_1:18573504-18573523 Msa0012380:intron 40.0%
ACCTTCAACATAGCAAATCC+TGG - chr1_1:18573558-18573577 None:intergenic 40.0%
!!! ACATCCAAACTGTTTTGGCA+TGG + chr1_1:18573599-18573618 Msa0012380:intron 40.0%
CTATCCATGCCAAAACAGTT+TGG - chr1_1:18573606-18573625 None:intergenic 40.0%
! ATTTCCTACAGGTTGGCTAA+TGG - chr1_1:18573669-18573688 None:intergenic 40.0%
ATACCCTCCAAGTTATCTTG+AGG - chr1_1:18573692-18573711 None:intergenic 40.0%
AGGAATGATATGGCCCAAAT+TGG - chr1_1:18573921-18573940 None:intergenic 40.0%
TGATGACTCCAGAAGCTATT+AGG - chr1_1:18573941-18573960 None:intergenic 40.0%
TCAAGAAAAGGGACACTGAA+TGG - chr1_1:18573969-18573988 None:intergenic 40.0%
GAAGGAGGTCATCAAGAAAA+GGG - chr1_1:18573980-18573999 None:intergenic 40.0%
AGAAGGAGGTCATCAAGAAA+AGG - chr1_1:18573981-18574000 None:intergenic 40.0%
AGAAACTGGATGTTCACAGA+AGG - chr1_1:18573998-18574017 None:intergenic 40.0%
! AGGAGGAGAATCTGGGTTTT+GGG - chr1_1:18572122-18572141 None:intergenic 45.0%
! AAGGAGGAGAATCTGGGTTT+TGG - chr1_1:18572123-18572142 None:intergenic 45.0%
GAAGAAGAAGGAGGAGAATC+TGG - chr1_1:18572130-18572149 None:intergenic 45.0%
TGTTTGGGTGAAGAAGAAGG+AGG - chr1_1:18572139-18572158 None:intergenic 45.0%
ATGCAAATTGAACGTGCCCT+TGG + chr1_1:18572262-18572281 Msa0012380:CDS 45.0%
AGACGTAAAGAAGACCACGA+TGG + chr1_1:18572489-18572508 Msa0012380:CDS 45.0%
! GACCACGATGGATTTGTTCT+TGG + chr1_1:18572501-18572520 Msa0012380:CDS 45.0%
TCCCAAGAACAAATCCATCG+TGG - chr1_1:18572506-18572525 None:intergenic 45.0%
GACTGTGCAGAAAAAGCTGA+GGG + chr1_1:18572540-18572559 Msa0012380:CDS 45.0%
CAGAAAAAGCTGAGGGAAAC+AGG + chr1_1:18572547-18572566 Msa0012380:CDS 45.0%
ACCAGTAAGTAGCAAGCAAC+TGG + chr1_1:18572616-18572635 Msa0012380:intron 45.0%
! ACCAGTTGCTTGCTACTTAC+TGG - chr1_1:18572620-18572639 None:intergenic 45.0%
ACGAGGCCTTTGCTAAATTG+TGG + chr1_1:18572897-18572916 Msa0012380:intron 45.0%
CGAGGCCTTTGCTAAATTGT+GGG + chr1_1:18572898-18572917 Msa0012380:intron 45.0%
ATTGTTGAGGGAGAGGCAAT+AGG - chr1_1:18573135-18573154 None:intergenic 45.0%
GTCTCATATTGTTGAGGGAG+AGG - chr1_1:18573142-18573161 None:intergenic 45.0%
TTCTCTGATGCACTTGCCAA+AGG + chr1_1:18573203-18573222 Msa0012380:intron 45.0%
TTCCAGATGCAAAGTTGAGC+AGG + chr1_1:18573301-18573320 Msa0012380:intron 45.0%
AACCTGCTCAACTTTGCATC+TGG - chr1_1:18573306-18573325 None:intergenic 45.0%
GTTTGACCATTGTCCAACCA+AGG + chr1_1:18573323-18573342 Msa0012380:intron 45.0%
TTGACCATTGTCCAACCAAG+GGG + chr1_1:18573325-18573344 Msa0012380:intron 45.0%
ATTGGTCACACAATACGGAG+GGG - chr1_1:18573437-18573456 None:intergenic 45.0%
GTCAGACCAAGGAAAATACC+TGG + chr1_1:18573472-18573491 Msa0012380:intron 45.0%
! TCAAGGCCAGGTATTTTCCT+TGG - chr1_1:18573481-18573500 None:intergenic 45.0%
TCCTCGACAACATAGAATCC+GGG + chr1_1:18573505-18573524 Msa0012380:intron 45.0%
CTCAAGGTTTATCATGCACC+CGG - chr1_1:18573526-18573545 None:intergenic 45.0%
!! GCCAGGATTTGCTATGTTGA+AGG + chr1_1:18573554-18573573 Msa0012380:intron 45.0%
TCTACCATTAGCCAACCTGT+AGG + chr1_1:18573662-18573681 Msa0012380:intron 45.0%
CTTGAGGATTTCCTACAGGT+TGG - chr1_1:18573676-18573695 None:intergenic 45.0%
TGTTGCAGGAAGAGGAATTC+TGG + chr1_1:18573872-18573891 Msa0012380:intron 45.0%
AACTGGATGTTCACAGAAGG+AGG - chr1_1:18573995-18574014 None:intergenic 45.0%
! AGGAGGAGAATCTGGGTTTT+GGG - chr1_1:18572122-18572141 None:intergenic 45.0%
! AAGGAGGAGAATCTGGGTTT+TGG - chr1_1:18572123-18572142 None:intergenic 45.0%
GAAGAAGAAGGAGGAGAATC+TGG - chr1_1:18572130-18572149 None:intergenic 45.0%
TGTTTGGGTGAAGAAGAAGG+AGG - chr1_1:18572139-18572158 None:intergenic 45.0%
ATGCAAATTGAACGTGCCCT+TGG + chr1_1:18572262-18572281 Msa0012380:CDS 45.0%
AGACGTAAAGAAGACCACGA+TGG + chr1_1:18572489-18572508 Msa0012380:CDS 45.0%
! GACCACGATGGATTTGTTCT+TGG + chr1_1:18572501-18572520 Msa0012380:CDS 45.0%
TCCCAAGAACAAATCCATCG+TGG - chr1_1:18572506-18572525 None:intergenic 45.0%
GACTGTGCAGAAAAAGCTGA+GGG + chr1_1:18572540-18572559 Msa0012380:CDS 45.0%
CAGAAAAAGCTGAGGGAAAC+AGG + chr1_1:18572547-18572566 Msa0012380:CDS 45.0%
ACCAGTAAGTAGCAAGCAAC+TGG + chr1_1:18572616-18572635 Msa0012380:intron 45.0%
! ACCAGTTGCTTGCTACTTAC+TGG - chr1_1:18572620-18572639 None:intergenic 45.0%
ACGAGGCCTTTGCTAAATTG+TGG + chr1_1:18572897-18572916 Msa0012380:intron 45.0%
CGAGGCCTTTGCTAAATTGT+GGG + chr1_1:18572898-18572917 Msa0012380:intron 45.0%
ATTGTTGAGGGAGAGGCAAT+AGG - chr1_1:18573135-18573154 None:intergenic 45.0%
GTCTCATATTGTTGAGGGAG+AGG - chr1_1:18573142-18573161 None:intergenic 45.0%
TTCTCTGATGCACTTGCCAA+AGG + chr1_1:18573203-18573222 Msa0012380:intron 45.0%
TTCCAGATGCAAAGTTGAGC+AGG + chr1_1:18573301-18573320 Msa0012380:intron 45.0%
AACCTGCTCAACTTTGCATC+TGG - chr1_1:18573306-18573325 None:intergenic 45.0%
GTTTGACCATTGTCCAACCA+AGG + chr1_1:18573323-18573342 Msa0012380:intron 45.0%
TTGACCATTGTCCAACCAAG+GGG + chr1_1:18573325-18573344 Msa0012380:intron 45.0%
ATTGGTCACACAATACGGAG+GGG - chr1_1:18573437-18573456 None:intergenic 45.0%
GTCAGACCAAGGAAAATACC+TGG + chr1_1:18573472-18573491 Msa0012380:intron 45.0%
! TCAAGGCCAGGTATTTTCCT+TGG - chr1_1:18573481-18573500 None:intergenic 45.0%
TCCTCGACAACATAGAATCC+GGG + chr1_1:18573505-18573524 Msa0012380:intron 45.0%
CTCAAGGTTTATCATGCACC+CGG - chr1_1:18573526-18573545 None:intergenic 45.0%
!! GCCAGGATTTGCTATGTTGA+AGG + chr1_1:18573554-18573573 Msa0012380:intron 45.0%
TCTACCATTAGCCAACCTGT+AGG + chr1_1:18573662-18573681 Msa0012380:intron 45.0%
CTTGAGGATTTCCTACAGGT+TGG - chr1_1:18573676-18573695 None:intergenic 45.0%
TGTTGCAGGAAGAGGAATTC+TGG + chr1_1:18573872-18573891 Msa0012380:intron 45.0%
AACTGGATGTTCACAGAAGG+AGG - chr1_1:18573995-18574014 None:intergenic 45.0%
! GGAGGAGAATCTGGGTTTTG+GGG - chr1_1:18572121-18572140 None:intergenic 50.0%
TGCATGAGCGAAGATGGTGA+TGG - chr1_1:18572247-18572266 None:intergenic 50.0%
GACAGAGCATACTTGAGGTC+AGG - chr1_1:18572313-18572332 None:intergenic 50.0%
GGACTGTGCAGAAAAAGCTG+AGG + chr1_1:18572539-18572558 Msa0012380:CDS 50.0%
GAGAGTGGCTGGGTGAAAAT+GGG + chr1_1:18572569-18572588 Msa0012380:CDS 50.0%
AGAGTGGCTGGGTGAAAATG+GGG + chr1_1:18572570-18572589 Msa0012380:CDS 50.0%
GGTGTTAGTGGAGCGAAATC+TGG - chr1_1:18572599-18572618 None:intergenic 50.0%
! GAGACTAGCTGATGAAGACG+AGG + chr1_1:18572880-18572899 Msa0012380:intron 50.0%
CGAGGCCCACAATTTAGCAA+AGG - chr1_1:18572906-18572925 None:intergenic 50.0%
TTGGAGACAAGCAATGGACG+AGG - chr1_1:18572924-18572943 None:intergenic 50.0%
!! TTGTGTTGGGTGGTTGGCTT+GGG - chr1_1:18573094-18573113 None:intergenic 50.0%
! ATTGTGTTGGGTGGTTGGCT+TGG - chr1_1:18573095-18573114 None:intergenic 50.0%
CAACCACCCAACACAATGCA+GGG + chr1_1:18573098-18573117 Msa0012380:intron 50.0%
TGAAGGCCCTGCATTGTGTT+GGG - chr1_1:18573107-18573126 None:intergenic 50.0%
AGAGGCAATAGGTCTGCTGA+AGG - chr1_1:18573124-18573143 None:intergenic 50.0%
AGTGCATCAGAGAAGAGACG+CGG - chr1_1:18573197-18573216 None:intergenic 50.0%
CACAGGCTGCAACACAGAAT+TGG - chr1_1:18573235-18573254 None:intergenic 50.0%
TGACCATTGTCCAACCAAGG+GGG + chr1_1:18573326-18573345 Msa0012380:intron 50.0%
! ATTTAAGACCCCCCCTTGGT+TGG - chr1_1:18573339-18573358 None:intergenic 50.0%
ACCAAGGGGGGGTCTTAAAT+TGG + chr1_1:18573339-18573358 Msa0012380:intron 50.0%
CCAAGGGGGGGTCTTAAATT+GGG + chr1_1:18573340-18573359 Msa0012380:intron 50.0%
ACCCGGATTCTATGTTGTCG+AGG - chr1_1:18573509-18573528 None:intergenic 50.0%
CGGGTGCATGATAAACCTTG+AGG + chr1_1:18573524-18573543 Msa0012380:intron 50.0%
! AACCTTGAGGCTTGTTTGCC+AGG + chr1_1:18573537-18573556 Msa0012380:intron 50.0%
ATCCTGGCAAACAAGCCTCA+AGG - chr1_1:18573542-18573561 None:intergenic 50.0%
! GGAGGAGAATCTGGGTTTTG+GGG - chr1_1:18572121-18572140 None:intergenic 50.0%
TGCATGAGCGAAGATGGTGA+TGG - chr1_1:18572247-18572266 None:intergenic 50.0%
GACAGAGCATACTTGAGGTC+AGG - chr1_1:18572313-18572332 None:intergenic 50.0%
GGACTGTGCAGAAAAAGCTG+AGG + chr1_1:18572539-18572558 Msa0012380:CDS 50.0%
GAGAGTGGCTGGGTGAAAAT+GGG + chr1_1:18572569-18572588 Msa0012380:CDS 50.0%
AGAGTGGCTGGGTGAAAATG+GGG + chr1_1:18572570-18572589 Msa0012380:CDS 50.0%
GGTGTTAGTGGAGCGAAATC+TGG - chr1_1:18572599-18572618 None:intergenic 50.0%
! GAGACTAGCTGATGAAGACG+AGG + chr1_1:18572880-18572899 Msa0012380:intron 50.0%
CGAGGCCCACAATTTAGCAA+AGG - chr1_1:18572906-18572925 None:intergenic 50.0%
TTGGAGACAAGCAATGGACG+AGG - chr1_1:18572924-18572943 None:intergenic 50.0%
!! TTGTGTTGGGTGGTTGGCTT+GGG - chr1_1:18573094-18573113 None:intergenic 50.0%
! ATTGTGTTGGGTGGTTGGCT+TGG - chr1_1:18573095-18573114 None:intergenic 50.0%
CAACCACCCAACACAATGCA+GGG + chr1_1:18573098-18573117 Msa0012380:intron 50.0%
TGAAGGCCCTGCATTGTGTT+GGG - chr1_1:18573107-18573126 None:intergenic 50.0%
AGAGGCAATAGGTCTGCTGA+AGG - chr1_1:18573124-18573143 None:intergenic 50.0%
AGTGCATCAGAGAAGAGACG+CGG - chr1_1:18573197-18573216 None:intergenic 50.0%
CACAGGCTGCAACACAGAAT+TGG - chr1_1:18573235-18573254 None:intergenic 50.0%
TGACCATTGTCCAACCAAGG+GGG + chr1_1:18573326-18573345 Msa0012380:intron 50.0%
! ATTTAAGACCCCCCCTTGGT+TGG - chr1_1:18573339-18573358 None:intergenic 50.0%
ACCAAGGGGGGGTCTTAAAT+TGG + chr1_1:18573339-18573358 Msa0012380:intron 50.0%
CCAAGGGGGGGTCTTAAATT+GGG + chr1_1:18573340-18573359 Msa0012380:intron 50.0%
ACCCGGATTCTATGTTGTCG+AGG - chr1_1:18573509-18573528 None:intergenic 50.0%
CGGGTGCATGATAAACCTTG+AGG + chr1_1:18573524-18573543 Msa0012380:intron 50.0%
! AACCTTGAGGCTTGTTTGCC+AGG + chr1_1:18573537-18573556 Msa0012380:intron 50.0%
ATCCTGGCAAACAAGCCTCA+AGG - chr1_1:18573542-18573561 None:intergenic 50.0%
!! GAAGATGGTGATGGTCGACG+GGG - chr1_1:18572238-18572257 None:intergenic 55.0%
!! CGAAGATGGTGATGGTCGAC+GGG - chr1_1:18572239-18572258 None:intergenic 55.0%
!! GCGAAGATGGTGATGGTCGA+CGG - chr1_1:18572240-18572259 None:intergenic 55.0%
! TCTGAAGCTACCAGCGCCAA+GGG - chr1_1:18572281-18572300 None:intergenic 55.0%
AGCTGAGGGAAACAGGAGAG+TGG + chr1_1:18572554-18572573 Msa0012380:CDS 55.0%
AGGGAAACAGGAGAGTGGCT+GGG + chr1_1:18572559-18572578 Msa0012380:CDS 55.0%
GGAGAGTGGCTGGGTGAAAA+TGG + chr1_1:18572568-18572587 Msa0012380:CDS 55.0%
CCTGCATTGTGTTGGGTGGT+TGG - chr1_1:18573100-18573119 None:intergenic 55.0%
CCAACCACCCAACACAATGC+AGG + chr1_1:18573097-18573116 Msa0012380:intron 55.0%
CTGAAGGCCCTGCATTGTGT+TGG - chr1_1:18573108-18573127 None:intergenic 55.0%
GACCATTGTCCAACCAAGGG+GGG + chr1_1:18573327-18573346 Msa0012380:intron 55.0%
ACCATTGTCCAACCAAGGGG+GGG + chr1_1:18573328-18573347 Msa0012380:intron 55.0%
! CCCAATTTAAGACCCCCCCT+TGG - chr1_1:18573343-18573362 None:intergenic 55.0%
GTCGAGGAATGTTCAAGGCC+AGG - chr1_1:18573493-18573512 None:intergenic 55.0%
!!! CAGAGGGAGTGCTTTTGCGT+CGG - chr1_1:18572033-18572052 None:intergenic 55.0%
!! GAAGATGGTGATGGTCGACG+GGG - chr1_1:18572238-18572257 None:intergenic 55.0%
!! CGAAGATGGTGATGGTCGAC+GGG - chr1_1:18572239-18572258 None:intergenic 55.0%
!! GCGAAGATGGTGATGGTCGA+CGG - chr1_1:18572240-18572259 None:intergenic 55.0%
! TCTGAAGCTACCAGCGCCAA+GGG - chr1_1:18572281-18572300 None:intergenic 55.0%
AGCTGAGGGAAACAGGAGAG+TGG + chr1_1:18572554-18572573 Msa0012380:CDS 55.0%
AGGGAAACAGGAGAGTGGCT+GGG + chr1_1:18572559-18572578 Msa0012380:CDS 55.0%
GGAGAGTGGCTGGGTGAAAA+TGG + chr1_1:18572568-18572587 Msa0012380:CDS 55.0%
CCTGCATTGTGTTGGGTGGT+TGG - chr1_1:18573100-18573119 None:intergenic 55.0%
CCAACCACCCAACACAATGC+AGG + chr1_1:18573097-18573116 Msa0012380:intron 55.0%
CTGAAGGCCCTGCATTGTGT+TGG - chr1_1:18573108-18573127 None:intergenic 55.0%
GACCATTGTCCAACCAAGGG+GGG + chr1_1:18573327-18573346 Msa0012380:intron 55.0%
ACCATTGTCCAACCAAGGGG+GGG + chr1_1:18573328-18573347 Msa0012380:intron 55.0%
! CCCAATTTAAGACCCCCCCT+TGG - chr1_1:18573343-18573362 None:intergenic 55.0%
GTCGAGGAATGTTCAAGGCC+AGG - chr1_1:18573493-18573512 None:intergenic 55.0%
! CGACGGGGAAGCTTGTTTGG+AGG - chr1_1:18572223-18572242 None:intergenic 60.0%
! GGTCGACGGGGAAGCTTGTT+TGG - chr1_1:18572226-18572245 None:intergenic 60.0%
ATTGAACGTGCCCTTGGCGC+TGG + chr1_1:18572268-18572287 Msa0012380:CDS 60.0%
!! CTCTGAAGCTACCAGCGCCA+AGG - chr1_1:18572282-18572301 None:intergenic 60.0%
!! GGCGCTGGTAGCTTCAGAGA+CGG + chr1_1:18572283-18572302 Msa0012380:CDS 60.0%
GAGGGAAACAGGAGAGTGGC+TGG + chr1_1:18572558-18572577 Msa0012380:CDS 60.0%
AGGCCCTGCATTGTGTTGGG+TGG - chr1_1:18573104-18573123 None:intergenic 60.0%
ACCCCCCCTTGGTTGGACAA+TGG - chr1_1:18573332-18573351 None:intergenic 60.0%
GGTCACACAATACGGAGGGG+AGG - chr1_1:18573434-18573453 None:intergenic 60.0%
! CGACGGGGAAGCTTGTTTGG+AGG - chr1_1:18572223-18572242 None:intergenic 60.0%
! GGTCGACGGGGAAGCTTGTT+TGG - chr1_1:18572226-18572245 None:intergenic 60.0%
ATTGAACGTGCCCTTGGCGC+TGG + chr1_1:18572268-18572287 Msa0012380:CDS 60.0%
!! CTCTGAAGCTACCAGCGCCA+AGG - chr1_1:18572282-18572301 None:intergenic 60.0%
!! GGCGCTGGTAGCTTCAGAGA+CGG + chr1_1:18572283-18572302 Msa0012380:CDS 60.0%
GAGGGAAACAGGAGAGTGGC+TGG + chr1_1:18572558-18572577 Msa0012380:CDS 60.0%
AGGCCCTGCATTGTGTTGGG+TGG - chr1_1:18573104-18573123 None:intergenic 60.0%
ACCCCCCCTTGGTTGGACAA+TGG - chr1_1:18573332-18573351 None:intergenic 60.0%
GGTCACACAATACGGAGGGG+AGG - chr1_1:18573434-18573453 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 18572031 18574204 18572031 ID=Msa0012380;Name=Msa0012380
chr1_1 mRNA 18572031 18574204 18572031 ID=Msa0012380-mRNA-1;Parent=Msa0012380;Name=Msa0012380-mRNA-1;_AED=0.01;_eAED=0.01;_QI=24|1|1|1|0.5|0.66|3|200|178
chr1_1 exon 18572031 18572320 18572031 ID=Msa0012380-mRNA-1:exon:6775;Parent=Msa0012380-mRNA-1
chr1_1 exon 18572474 18572619 18572474 ID=Msa0012380-mRNA-1:exon:6776;Parent=Msa0012380-mRNA-1
chr1_1 exon 18573880 18574204 18573880 ID=Msa0012380-mRNA-1:exon:6777;Parent=Msa0012380-mRNA-1
chr1_1 five_prime_UTR 18572031 18572054 18572031 ID=Msa0012380-mRNA-1:five_prime_utr;Parent=Msa0012380-mRNA-1
chr1_1 CDS 18572055 18572320 18572055 ID=Msa0012380-mRNA-1:cds;Parent=Msa0012380-mRNA-1
chr1_1 CDS 18572474 18572619 18572474 ID=Msa0012380-mRNA-1:cds;Parent=Msa0012380-mRNA-1
chr1_1 CDS 18573880 18574004 18573880 ID=Msa0012380-mRNA-1:cds;Parent=Msa0012380-mRNA-1
chr1_1 three_prime_UTR 18574005 18574204 18574005 ID=Msa0012380-mRNA-1:three_prime_utr;Parent=Msa0012380-mRNA-1
Gene Sequence

>Msa0012380

ATGTTTTGCTTATGCAACAATCTTTCTATAACCAAACCCATTCTTATTACTAATGCAACTCTTCCCCAAAACCCAGATTCTCCTCCTTCTTCTTCACCCAAACAAACCAATCTTCCTCCAAAGCAAAAACCTTCACTAAGATCCAAGAACTCCACTACTTCATTACCTCCAAACAAGCTTCCCCGTCGACCATCACCATCTTCGCTCATGCAAATTGAACGTGCCCTTGGCGCTGGTAGCTTCAGAGACGGTGAACCTGACCTCAAAATGAAGAACGATTCAGACGTAAAGAAGACCACGATGGATTTGTTCTTGGGACAAGTATTTGAAGGGACTGTGCAGAAAAAGCTGAGGGAAACAGGAGAGTGGCTGGGTGAAAATGGGGAGACCAGATTTCGCTCCACTAACACCAGAAGAGGAATTCTGGTGTTTGCATTTCAATGGATGATGCCAATTTGGGCCATATCATTCCTAATAGCTTCTGGAGTCATCAAATTACCATTCAGTGTCCCTTTTCTTGATGACCTCCTTCTGTGA

Protein sequence

>Msa0012380

MFCLCNNLSITKPILITNATLPQNPDSPPSSSPKQTNLPPKQKPSLRSKNSTTSLPPNKLPRRPSPSSLMQIERALGAGSFRDGEPDLKMKNDSDVKKTTMDLFLGQVFEGTVQKKLRETGEWLGENGETRFRSTNTRRGILVFAFQWMMPIWAISFLIASGVIKLPFSVPFLDDLLL*