AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1228350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228350 MtrunA17_Chr8g0335211 97.608 209 5 0 49 257 12 220 1.49e-154 429
Msa1228350 MtrunA17_Chr4g0033841 40.449 89 53 0 132 220 108 196 5.89e-14 69.3
Msa1228350 MtrunA17_Chr7g0214751 30.201 149 71 5 124 240 90 237 1.98e-12 65.1
Msa1228350 MtrunA17_Chr4g0052911 33.600 125 71 2 127 239 114 238 2.23e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228350 AT3G60370.1 63.118 263 70 5 1 257 1 242 2.96e-108 313
Msa1228350 AT3G60370.2 63.118 263 70 5 1 257 30 271 1.04e-107 312
Msa1228350 AT2G43560.2 43.820 89 50 0 132 220 46 134 9.34e-16 73.2
Msa1228350 AT2G43560.1 39.640 111 66 1 110 220 81 190 9.92e-16 74.3
Msa1228350 AT4G19830.1 29.932 147 70 4 132 245 83 229 3.05e-13 67.8
Msa1228350 AT5G13410.1 31.788 151 70 5 122 240 104 253 5.26e-12 64.7

Find 51 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCTTCTCTAATAAAATT+TGG 0.135782 8_2:-3845102 None:intergenic
TGGTTCTTCTTTCACAGTTT+TGG 0.207260 8_2:-3846657 None:intergenic
AACTATATAACGCGTGATTC+GGG 0.213117 8_2:+3845302 Msa1228350:CDS
GAAACTTGCGCTTTCTGTTT+TGG 0.240114 8_2:+3844951 Msa1228350:CDS
TATTGACAGCACTTATTTAC+AGG 0.273970 8_2:+3845853 Msa1228350:CDS
TACTTTCTCAGGATGTAATA+TGG 0.285948 8_2:-3844920 None:intergenic
CTTGTTACCCATGCGAATTT+TGG 0.288794 8_2:-3845885 None:intergenic
TACCTTCTCTAATAAAATTT+GGG 0.314007 8_2:-3845101 None:intergenic
ATAATTATTCCTCCTGATCT+TGG 0.323150 8_2:+3846073 Msa1228350:CDS
TAACTATATAACGCGTGATT+CGG 0.332001 8_2:+3845301 Msa1228350:CDS
TTCCTCCTTAATACTTTCTC+AGG 0.354488 8_2:-3844931 None:intergenic
CTTCAGCACAAATATTAGTT+AGG 0.355241 8_2:+3846728 Msa1228350:three_prime_UTR
TACATCCTGAGAAAGTATTA+AGG 0.373534 8_2:+3844926 Msa1228350:CDS
CACTCTTACATGGAATCCTT+TGG 0.373861 8_2:-3844806 None:intergenic
ATAAAATTTGGGAAGTCATC+TGG 0.374287 8_2:-3845090 None:intergenic
GGTAACAAGGCATTGGTTCC+AGG 0.384493 8_2:+3845899 Msa1228350:CDS
TCACGCGTTATATAGTTATC+TGG 0.398419 8_2:-3845296 None:intergenic
CACTTATTTACAGGGTTCTC+CGG 0.422942 8_2:+3845862 Msa1228350:CDS
AAAACCTGCTGACCATCCTT+TGG 0.437003 8_2:-3845365 None:intergenic
CAGGTCACATTTCACTATGT+TGG 0.449348 8_2:+3845809 Msa1228350:intron
TTTGCATGAGAAGATAAAGT+TGG 0.475317 8_2:-3844991 None:intergenic
TGTATTTATGGATAGAGTGC+AGG 0.475495 8_2:+3844891 Msa1228350:intron
TAAATTATGATCTTGCTTCG+AGG 0.476673 8_2:+3846754 Msa1228350:three_prime_UTR
TATGTTGGCTATAATGAATC+CGG 0.489665 8_2:+3845824 Msa1228350:CDS
TCCTCCTGATCTTGGACCCC+CGG 0.496637 8_2:+3846081 Msa1228350:CDS
CAAAATTCGCATGGGTAACA+AGG 0.517528 8_2:+3845886 Msa1228350:CDS
AGTGCTGTCAATACGCCGGC+CGG 0.518095 8_2:-3845843 None:intergenic
AACATCAGAGTAAAATCCTA+TGG 0.519964 8_2:-3846677 None:intergenic
TTGTCCAAAGGATGGTCAGC+AGG 0.523009 8_2:+3845361 Msa1228350:CDS
TCGCATGGGTAACAAGGCAT+TGG 0.532556 8_2:+3845892 Msa1228350:CDS
AAATTCCTTTGTACAGTACA+AGG 0.543326 8_2:+3844746 Msa1228350:CDS
CTGTACCAACTTCAAAATCT+CGG 0.552576 8_2:-3845334 None:intergenic
TTCTCCGGCCAAAATTCGCA+TGG 0.552997 8_2:+3845877 Msa1228350:CDS
GGAATTAGAGACATGAGAGC+AGG 0.554241 8_2:+3846037 Msa1228350:CDS
TCTGATGTAGGATTTGAGGA+AGG 0.571358 8_2:+3846016 Msa1228350:intron
ATTAGAGACATGAGAGCAGG+TGG 0.575545 8_2:+3846040 Msa1228350:CDS
ATTGACAGCACTTATTTACA+GGG 0.593497 8_2:+3845854 Msa1228350:CDS
AACTGTGAAAGAAGAACCAT+AGG 0.596337 8_2:+3846661 Msa1228350:CDS
CTGTTGTCAATAATCGAGAA+AGG 0.598520 8_2:+3846777 Msa1228350:three_prime_UTR
GGACAAGGACAATCAACTCA+TGG 0.598798 8_2:+3844767 Msa1228350:CDS
ACTATATAACGCGTGATTCG+GGG 0.601130 8_2:+3845303 Msa1228350:CDS
CTTGTCCTTGTACTGTACAA+AGG 0.610580 8_2:-3844751 None:intergenic
CTTTGTACAGTACAAGGACA+AGG 0.612700 8_2:+3844752 Msa1228350:CDS
ACAGGTGATTGTCCAAAGGA+TGG 0.620639 8_2:+3845353 Msa1228350:CDS
GAAGATGGTGAAGATAAGAG+CGG 0.626564 8_2:-3843413 None:intergenic
TCTCCGGCCAAAATTCGCAT+GGG 0.643150 8_2:+3845878 Msa1228350:CDS
ATCCTGAGAAAGTATTAAGG+AGG 0.647507 8_2:+3844929 Msa1228350:CDS
TGGTACAGGTGATTGTCCAA+AGG 0.660317 8_2:+3845349 Msa1228350:CDS
AATAAGTGCTGTCAATACGC+CGG 0.677404 8_2:-3845847 None:intergenic
TTGGCTATAATGAATCCGGC+CGG 0.687904 8_2:+3845828 Msa1228350:CDS
CAAGGACAATCAACTCATGG+AGG 0.721666 8_2:+3844770 Msa1228350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTTAATATTTTAGTTGA+TGG + chr8_2:3843609-3843628 Msa1228350:intron 15.0%
!!! AAGTTAATATTTTAGTTGAT+GGG + chr8_2:3843610-3843629 Msa1228350:intron 15.0%
!!! TAATTTTCATCTTAATTGTT+TGG + chr8_2:3845426-3845445 Msa1228350:intron 15.0%
!!! AATTTTCATCTTAATTGTTT+GGG + chr8_2:3845427-3845446 Msa1228350:intron 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG - chr8_2:3846224-3846243 None:intergenic 15.0%
!!! TCACATAATTTTTTACATTA+CGG + chr8_2:3846496-3846515 Msa1228350:intron 15.0%
!! AATTGAAACACATATATGTA+TGG - chr8_2:3843529-3843548 None:intergenic 20.0%
!!! GATATTTTTTTTTCTTTCTG+AGG + chr8_2:3843568-3843587 Msa1228350:intron 20.0%
!! TTGAAAAGTTACAACAAATT+AGG + chr8_2:3843798-3843817 Msa1228350:intron 20.0%
!! TGAAAAGTTACAACAAATTA+GGG + chr8_2:3843799-3843818 Msa1228350:intron 20.0%
!! TATAAGCAATTCTTAAGTTT+AGG + chr8_2:3844075-3844094 Msa1228350:intron 20.0%
!! AAACAATTCTATTTGTTTGT+TGG + chr8_2:3844119-3844138 Msa1228350:intron 20.0%
!! AACAATTCTATTTGTTTGTT+GGG + chr8_2:3844120-3844139 Msa1228350:intron 20.0%
!! GTAATAAATACTTTCAACAT+TGG - chr8_2:3844422-3844441 None:intergenic 20.0%
!! ATTTATTGAAGAGATTAGAA+GGG - chr8_2:3844481-3844500 None:intergenic 20.0%
!! AATTTATTGAAGAGATTAGA+AGG - chr8_2:3844482-3844501 None:intergenic 20.0%
!! TAACTATCATACAATGAATT+AGG - chr8_2:3844588-3844607 None:intergenic 20.0%
!! TTTCATTTAATATCCTTCTA+AGG + chr8_2:3844855-3844874 Msa1228350:intron 20.0%
!! TTCATTTAATATCCTTCTAA+GGG + chr8_2:3844856-3844875 Msa1228350:intron 20.0%
!!! GCATTTTTTGTTTGTATTTA+TGG + chr8_2:3844879-3844898 Msa1228350:intron 20.0%
!!! ATTATACGGATTCATATTTT+TGG - chr8_2:3845019-3845038 None:intergenic 20.0%
!! TACCTTCTCTAATAAAATTT+GGG - chr8_2:3845104-3845123 None:intergenic 20.0%
!! TTACCTTCTCTAATAAAATT+TGG - chr8_2:3845105-3845124 None:intergenic 20.0%
!! AATCATGTATGAAAAAACAA+TGG - chr8_2:3845131-3845150 None:intergenic 20.0%
!! TAAAGAAAGAAATAGTTGAT+TGG - chr8_2:3845406-3845425 None:intergenic 20.0%
!! AAGAAGTTAACACAAATATT+AGG + chr8_2:3845452-3845471 Msa1228350:intron 20.0%
!! TTAGCAATAATTATCAAACA+TGG - chr8_2:3846159-3846178 None:intergenic 20.0%
!! ATTCTGATAGTTGATATGTA+AGG + chr8_2:3843701-3843720 Msa1228350:intron 25.0%
!! TAGTTGATATGTAAGGTTAA+TGG + chr8_2:3843708-3843727 Msa1228350:intron 25.0%
!! AATTTTCAGTTAAGATTGCA+GGG - chr8_2:3844025-3844044 None:intergenic 25.0%
!! TAATTTTCAGTTAAGATTGC+AGG - chr8_2:3844026-3844045 None:intergenic 25.0%
! ATAAACTATCTATCCAAACA+GGG - chr8_2:3844244-3844263 None:intergenic 25.0%
! AATAAACTATCTATCCAAAC+AGG - chr8_2:3844245-3844264 None:intergenic 25.0%
!! AAATACTTTCAACATTGGTT+GGG - chr8_2:3844417-3844436 None:intergenic 25.0%
! TAAATACTTTCAACATTGGT+TGG - chr8_2:3844418-3844437 None:intergenic 25.0%
! TTTATTGAAGAGATTAGAAG+GGG - chr8_2:3844480-3844499 None:intergenic 25.0%
!! ATTACAGAGCACAAAATTTT+GGG - chr8_2:3844561-3844580 None:intergenic 25.0%
! TATCATACAATGAATTAGGT+AGG - chr8_2:3844584-3844603 None:intergenic 25.0%
! CTAAAGTAGTTAGATAAACA+TGG - chr8_2:3844681-3844700 None:intergenic 25.0%
!!! TGATAAAGCATTTCCTTTTT+TGG + chr8_2:3844718-3844737 Msa1228350:intron 25.0%
! AAAATAATGTCACTCTTACA+TGG - chr8_2:3844819-3844838 None:intergenic 25.0%
!! AGTGACATTATTTTCTTGAA+TGG + chr8_2:3844825-3844844 Msa1228350:intron 25.0%
! TCATTTAATATCCTTCTAAG+GGG + chr8_2:3844857-3844876 Msa1228350:intron 25.0%
!! AAGACACGTTTTTCATTATA+CGG - chr8_2:3845033-3845052 None:intergenic 25.0%
!! TTCCCAAATTTTATTAGAGA+AGG + chr8_2:3845099-3845118 Msa1228350:CDS 25.0%
! AATACTACTACTTGTATGTT+TGG - chr8_2:3845644-3845663 None:intergenic 25.0%
!!! TAAATCTATCCTTTTTTACC+TGG - chr8_2:3845920-3845939 None:intergenic 25.0%
! AAAACATTGCCTATACATAA+GGG - chr8_2:3846394-3846413 None:intergenic 25.0%
! TAAAACATTGCCTATACATA+AGG - chr8_2:3846395-3846414 None:intergenic 25.0%
!! ACATGCATAGTTTAAAATTG+TGG - chr8_2:3846541-3846560 None:intergenic 25.0%
!! AATTTTAAACTATGCATGTG+TGG + chr8_2:3846542-3846561 Msa1228350:intron 25.0%
!! ATTTTAAACTATGCATGTGT+GGG + chr8_2:3846543-3846562 Msa1228350:intron 25.0%
!!! AATCTTGTTTTGTATTTTGC+AGG + chr8_2:3846570-3846589 Msa1228350:intron 25.0%
! ATTGTTGCTGTTAAGGTTAA+TGG + chr8_2:3843774-3843793 Msa1228350:intron 30.0%
ACAACAAATTAGGGTATGTT+TGG + chr8_2:3843808-3843827 Msa1228350:intron 30.0%
TTGACTAAAAAAGACCTGTT+CGG + chr8_2:3843873-3843892 Msa1228350:intron 30.0%
AAATAATCAATAAGCTCGTG+AGG - chr8_2:3843913-3843932 None:intergenic 30.0%
! ATTTTCAGTTAAGATTGCAG+GGG - chr8_2:3844024-3844043 None:intergenic 30.0%
! TTCTATTTGTTTGTTGGGAT+AGG + chr8_2:3844125-3844144 Msa1228350:intron 30.0%
ATAGGACTAAGATAGTTTAG+AGG + chr8_2:3844143-3844162 Msa1228350:intron 30.0%
TTCCATTGCACTATAGTTTA+GGG + chr8_2:3844180-3844199 Msa1228350:intron 30.0%
GAGCTATAGTGTTTAAACAA+CGG + chr8_2:3844218-3844237 Msa1228350:intron 30.0%
TTGTGGAAATAAGCTGAAAA+TGG + chr8_2:3844355-3844374 Msa1228350:intron 30.0%
!!! CACAAAATTTTGGGTTTGTT+TGG - chr8_2:3844552-3844571 None:intergenic 30.0%
! GATTACAGAGCACAAAATTT+TGG - chr8_2:3844562-3844581 None:intergenic 30.0%
!! AACTACTTTAGAACCTGATT+TGG + chr8_2:3844690-3844709 Msa1228350:intron 30.0%
CTTTATCAGAATACCAAATC+AGG - chr8_2:3844706-3844725 None:intergenic 30.0%
! AGGAATTTTACTGCCAAAAA+AGG - chr8_2:3844734-3844753 None:intergenic 30.0%
AAATTCCTTTGTACAGTACA+AGG + chr8_2:3844746-3844765 Msa1228350:CDS 30.0%
AGGCACTAATAAAAAACCAA+AGG + chr8_2:3844790-3844809 Msa1228350:CDS 30.0%
TACTTTCTCAGGATGTAATA+TGG - chr8_2:3844923-3844942 None:intergenic 30.0%
!! TACATCCTGAGAAAGTATTA+AGG + chr8_2:3844926-3844945 Msa1228350:CDS 30.0%
TTTGCATGAGAAGATAAAGT+TGG - chr8_2:3844994-3845013 None:intergenic 30.0%
ATAAAATTTGGGAAGTCATC+TGG - chr8_2:3845093-3845112 None:intergenic 30.0%
AAAACAACTGTAACACTTAC+AGG - chr8_2:3845204-3845223 None:intergenic 30.0%
!! GTTGTTTTGTGTCAAACTTT+TGG + chr8_2:3845216-3845235 Msa1228350:intron 30.0%
! AACTTTTGGATATGATGTTC+TGG + chr8_2:3845230-3845249 Msa1228350:intron 30.0%
!!! GGTTTGTTAATATGCTTTTC+AGG + chr8_2:3845251-3845270 Msa1228350:intron 30.0%
TAACTATATAACGCGTGATT+CGG + chr8_2:3845301-3845320 Msa1228350:CDS 30.0%
!!! ATTTACCGAGATTTTGAAGT+TGG + chr8_2:3845329-3845348 Msa1228350:CDS 30.0%
! ATTTTGCAGTGAAAACAAAC+AGG - chr8_2:3845521-3845540 None:intergenic 30.0%
!! CTTGATGAGTTTGTTGAAAT+GGG + chr8_2:3845686-3845705 Msa1228350:intron 30.0%
!! TTGATGAGTTTGTTGAAATG+GGG + chr8_2:3845687-3845706 Msa1228350:intron 30.0%
TTTGTTGAAATGGGGAAAAT+TGG + chr8_2:3845695-3845714 Msa1228350:intron 30.0%
ATTGGAAATTGATGTTTGAG+TGG + chr8_2:3845713-3845732 Msa1228350:intron 30.0%
! TATGTTGGCTATAATGAATC+CGG + chr8_2:3845824-3845843 Msa1228350:CDS 30.0%
TATTGACAGCACTTATTTAC+AGG + chr8_2:3845853-3845872 Msa1228350:CDS 30.0%
ATTGACAGCACTTATTTACA+GGG + chr8_2:3845854-3845873 Msa1228350:CDS 30.0%
AAATCCTACATCAGAAAATG+TGG - chr8_2:3846011-3846030 None:intergenic 30.0%
! ATTTTCTGATGTAGGATTTG+AGG + chr8_2:3846012-3846031 Msa1228350:intron 30.0%
ATAATTATTCCTCCTGATCT+TGG + chr8_2:3846073-3846092 Msa1228350:CDS 30.0%
AAAGAGAATAAGAGATGTAC+CGG - chr8_2:3846103-3846122 None:intergenic 30.0%
AACTTATTCCGAACATATGT+CGG + chr8_2:3846253-3846272 Msa1228350:intron 30.0%
! ATGTCTTTGATTAGAAGTGT+CGG + chr8_2:3846308-3846327 Msa1228350:intron 30.0%
GTTGCTAAAAACTTATGCTA+AGG + chr8_2:3846340-3846359 Msa1228350:intron 30.0%
GTTTATCTTCCCTTATGTAT+AGG + chr8_2:3846382-3846401 Msa1228350:intron 30.0%
!! TTGTTTTGTATTTTGCAGGT+AGG + chr8_2:3846574-3846593 Msa1228350:intron 30.0%
TTTGAGCTGAAAAATGTTGA+AGG - chr8_2:3846601-3846620 None:intergenic 30.0%
AACATCAGAGTAAAATCCTA+TGG - chr8_2:3846680-3846699 None:intergenic 30.0%
CTTCAGCACAAATATTAGTT+AGG + chr8_2:3846728-3846747 Msa1228350:three_prime_UTR 30.0%
TAAATTATGATCTTGCTTCG+AGG + chr8_2:3846754-3846773 Msa1228350:three_prime_UTR 30.0%
GAAGAAGAAGAAGAAGAAGA+TGG - chr8_2:3843431-3843450 None:intergenic 35.0%
CGAAGTTGAATTTATGTTGC+TGG + chr8_2:3843662-3843681 Msa1228350:intron 35.0%
! AACTCTCATTGTTGCTGTTA+AGG + chr8_2:3843767-3843786 Msa1228350:intron 35.0%
! TAAGATAGTTTAGAGGTGCA+GGG + chr8_2:3844150-3844169 Msa1228350:intron 35.0%
GTTCCATTGCACTATAGTTT+AGG + chr8_2:3844179-3844198 Msa1228350:intron 35.0%
TCCATTGCACTATAGTTTAG+GGG + chr8_2:3844181-3844200 Msa1228350:intron 35.0%
!! GTTGTTTTCAGAAGCTATCA+TGG + chr8_2:3844327-3844346 Msa1228350:intron 35.0%
AGATTAGAAGGGGTTATGTT+TGG - chr8_2:3844470-3844489 None:intergenic 35.0%
AACAAAAAATGCCCCTTAGA+AGG - chr8_2:3844871-3844890 None:intergenic 35.0%
TGTATTTATGGATAGAGTGC+AGG + chr8_2:3844891-3844910 Msa1228350:intron 35.0%
!! ATCCTGAGAAAGTATTAAGG+AGG + chr8_2:3844929-3844948 Msa1228350:CDS 35.0%
TTCCTCCTTAATACTTTCTC+AGG - chr8_2:3844934-3844953 None:intergenic 35.0%
TCACGCGTTATATAGTTATC+TGG - chr8_2:3845299-3845318 None:intergenic 35.0%
AACTATATAACGCGTGATTC+GGG + chr8_2:3845302-3845321 Msa1228350:CDS 35.0%
CTGTACCAACTTCAAAATCT+CGG - chr8_2:3845337-3845356 None:intergenic 35.0%
AATTCTTCTAGACGTACGTT+TGG + chr8_2:3845538-3845557 Msa1228350:intron 35.0%
GAAATAAGGAAGCTACCAAT+TGG - chr8_2:3845573-3845592 None:intergenic 35.0%
! CAAGTAGTAGTATTTTGCAG+TGG + chr8_2:3845650-3845669 Msa1228350:intron 35.0%
CCATTTCAACAAACTCATCA+AGG - chr8_2:3845688-3845707 None:intergenic 35.0%
!! CCTTGATGAGTTTGTTGAAA+TGG + chr8_2:3845685-3845704 Msa1228350:intron 35.0%
TGACAAAAAGCTTTCGTCAT+TGG + chr8_2:3845968-3845987 Msa1228350:intron 35.0%
! TTCTCCACATTTTCTGATGT+AGG + chr8_2:3846004-3846023 Msa1228350:intron 35.0%
AAGAGAATAAGAGATGTACC+GGG - chr8_2:3846102-3846121 None:intergenic 35.0%
CTTCTAATCAAAGACATGCT+TGG - chr8_2:3846305-3846324 None:intergenic 35.0%
TTACATTACGGCCACAATTA+TGG + chr8_2:3846508-3846527 Msa1228350:intron 35.0%
! TGGTTCTTCTTTCACAGTTT+TGG - chr8_2:3846660-3846679 None:intergenic 35.0%
AACTGTGAAAGAAGAACCAT+AGG + chr8_2:3846661-3846680 Msa1228350:CDS 35.0%
CTGTTGTCAATAATCGAGAA+AGG + chr8_2:3846777-3846796 Msa1228350:three_prime_UTR 35.0%
GAAGATGGTGAAGATAAGAG+CGG - chr8_2:3843416-3843435 None:intergenic 40.0%
! CTAAGATAGTTTAGAGGTGC+AGG + chr8_2:3844149-3844168 Msa1228350:intron 40.0%
! AAGATAGTTTAGAGGTGCAG+GGG + chr8_2:3844151-3844170 Msa1228350:intron 40.0%
ACCCCTAAACTATAGTGCAA+TGG - chr8_2:3844185-3844204 None:intergenic 40.0%
AAGCTATCATGGAAAGCTTG+TGG + chr8_2:3844338-3844357 Msa1228350:intron 40.0%
CTTGTCCTTGTACTGTACAA+AGG - chr8_2:3844754-3844773 None:intergenic 40.0%
CTTTGTACAGTACAAGGACA+AGG + chr8_2:3844752-3844771 Msa1228350:CDS 40.0%
CACTCTTACATGGAATCCTT+TGG - chr8_2:3844809-3844828 None:intergenic 40.0%
! GAAACTTGCGCTTTCTGTTT+TGG + chr8_2:3844951-3844970 Msa1228350:CDS 40.0%
ACTATATAACGCGTGATTCG+GGG + chr8_2:3845303-3845322 Msa1228350:CDS 40.0%
!!! CGAGATTTTGAAGTTGGTAC+AGG + chr8_2:3845335-3845354 Msa1228350:CDS 40.0%
GACAATTTCAGTTCTCAGTC+TGG - chr8_2:3845487-3845506 None:intergenic 40.0%
GTTTGGTTAGAAGCTCCAAT+TGG + chr8_2:3845555-3845574 Msa1228350:intron 40.0%
GCAATCTCGACGTTGAAATA+AGG - chr8_2:3845587-3845606 None:intergenic 40.0%
TTTCAACGTCGAGATTGCAT+TGG + chr8_2:3845589-3845608 Msa1228350:intron 40.0%
TTCAACGTCGAGATTGCATT+GGG + chr8_2:3845590-3845609 Msa1228350:intron 40.0%
ATAGTGAAATGTGACCTGCA+AGG - chr8_2:3845807-3845826 None:intergenic 40.0%
CAGGTCACATTTCACTATGT+TGG + chr8_2:3845809-3845828 Msa1228350:intron 40.0%
! AATAAGTGCTGTCAATACGC+CGG - chr8_2:3845850-3845869 None:intergenic 40.0%
CACTTATTTACAGGGTTCTC+CGG + chr8_2:3845862-3845881 Msa1228350:CDS 40.0%
! CTTGTTACCCATGCGAATTT+TGG - chr8_2:3845888-3845907 None:intergenic 40.0%
CAAAATTCGCATGGGTAACA+AGG + chr8_2:3845886-3845905 Msa1228350:CDS 40.0%
!! GCATTGGTTCCAGGTAAAAA+AGG + chr8_2:3845908-3845927 Msa1228350:intron 40.0%
TCTGATGTAGGATTTGAGGA+AGG + chr8_2:3846016-3846035 Msa1228350:intron 40.0%
AGAGAATAAGAGATGTACCG+GGG - chr8_2:3846101-3846120 None:intergenic 40.0%
GGTGTCAACATGTACATGTT+CGG - chr8_2:3846203-3846222 None:intergenic 40.0%
GAGAGAGAGAGAGAGTTACA+TGG - chr8_2:3843473-3843492 None:intergenic 45.0%
AAGTAAGTGATGGTCCGAAC+AGG - chr8_2:3843890-3843909 None:intergenic 45.0%
! AGATAGTTTAGAGGTGCAGG+GGG + chr8_2:3844152-3844171 Msa1228350:intron 45.0%
GTTTAAACAACGGCCCTGTT+TGG + chr8_2:3844228-3844247 Msa1228350:intron 45.0%
GGACAAGGACAATCAACTCA+TGG + chr8_2:3844767-3844786 Msa1228350:CDS 45.0%
CAAGGACAATCAACTCATGG+AGG + chr8_2:3844770-3844789 Msa1228350:CDS 45.0%
CTTACAGGAGAGACATCACA+GGG - chr8_2:3845189-3845208 None:intergenic 45.0%
ACTTACAGGAGAGACATCAC+AGG - chr8_2:3845190-3845209 None:intergenic 45.0%
TGGTACAGGTGATTGTCCAA+AGG + chr8_2:3845349-3845368 Msa1228350:CDS 45.0%
ACAGGTGATTGTCCAAAGGA+TGG + chr8_2:3845353-3845372 Msa1228350:CDS 45.0%
AAAACCTGCTGACCATCCTT+TGG - chr8_2:3845368-3845387 None:intergenic 45.0%
TACAGTATACCATGCCTTGC+AGG + chr8_2:3845790-3845809 Msa1228350:intron 45.0%
TTGGCTATAATGAATCCGGC+CGG + chr8_2:3845828-3845847 Msa1228350:CDS 45.0%
!! TTACCCATGCGAATTTTGGC+CGG - chr8_2:3845884-3845903 None:intergenic 45.0%
GGAATTAGAGACATGAGAGC+AGG + chr8_2:3846037-3846056 Msa1228350:CDS 45.0%
ATTAGAGACATGAGAGCAGG+TGG + chr8_2:3846040-3846059 Msa1228350:CDS 45.0%
GAGAATAAGAGATGTACCGG+GGG - chr8_2:3846100-3846119 None:intergenic 45.0%
TCAAACATGGAAAGACTCGC+AGG - chr8_2:3846146-3846165 None:intergenic 45.0%
GTCTGACACCGACATATGTT+CGG - chr8_2:3846264-3846283 None:intergenic 45.0%
TTGCTTTCGCGATGTAGTTG+TGG + chr8_2:3846470-3846489 Msa1228350:intron 45.0%
GTGGCTCACAACCATAATTG+TGG - chr8_2:3846522-3846541 None:intergenic 45.0%
GCTCGTGAGGAAGTAAGTGA+TGG - chr8_2:3843900-3843919 None:intergenic 50.0%
TTGTCCAAAGGATGGTCAGC+AGG + chr8_2:3845361-3845380 Msa1228350:CDS 50.0%
GAAATGTGACCTGCAAGGCA+TGG - chr8_2:3845802-3845821 None:intergenic 50.0%
TTCTCCGGCCAAAATTCGCA+TGG + chr8_2:3845877-3845896 Msa1228350:CDS 50.0%
TCTCCGGCCAAAATTCGCAT+GGG + chr8_2:3845878-3845897 Msa1228350:CDS 50.0%
TCGCATGGGTAACAAGGCAT+TGG + chr8_2:3845892-3845911 Msa1228350:CDS 50.0%
!! GGTAACAAGGCATTGGTTCC+AGG + chr8_2:3845899-3845918 Msa1228350:CDS 50.0%
CTCGCAGGTACAGTAGTGAA+TGG - chr8_2:3846131-3846150 None:intergenic 50.0%
AGTGCTGTCAATACGCCGGC+CGG - chr8_2:3845846-3845865 None:intergenic 60.0%
TCCTCCTGATCTTGGACCCC+CGG + chr8_2:3846081-3846100 Msa1228350:CDS 60.0%
TGTACCGGGGGTCCAAGATC+AGG - chr8_2:3846088-3846107 None:intergenic 60.0%
ACCGGGGGTCCAAGATCAGG+AGG - chr8_2:3846085-3846104 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 3843371 3846853 3843371 ID=Msa1228350;Name=Msa1228350
chr8_2 mRNA 3843371 3846853 3843371 ID=Msa1228350-mRNA-1;Parent=Msa1228350;Name=Msa1228350-mRNA-1;_AED=0.11;_eAED=0.11;_QI=36|1|1|1|0.83|0.85|7|142|257
chr8_2 exon 3843371 3843473 3843371 ID=Msa1228350-mRNA-1:exon:1200;Parent=Msa1228350-mRNA-1
chr8_2 exon 3844744 3844819 3844744 ID=Msa1228350-mRNA-1:exon:1201;Parent=Msa1228350-mRNA-1
chr8_2 exon 3844906 3845120 3844906 ID=Msa1228350-mRNA-1:exon:1202;Parent=Msa1228350-mRNA-1
chr8_2 exon 3845273 3845382 3845273 ID=Msa1228350-mRNA-1:exon:1203;Parent=Msa1228350-mRNA-1
chr8_2 exon 3845812 3845920 3845812 ID=Msa1228350-mRNA-1:exon:1204;Parent=Msa1228350-mRNA-1
chr8_2 exon 3846026 3846102 3846026 ID=Msa1228350-mRNA-1:exon:1205;Parent=Msa1228350-mRNA-1
chr8_2 exon 3846592 3846853 3846592 ID=Msa1228350-mRNA-1:exon:1206;Parent=Msa1228350-mRNA-1
chr8_2 five_prime_UTR 3843371 3843406 3843371 ID=Msa1228350-mRNA-1:five_prime_utr;Parent=Msa1228350-mRNA-1
chr8_2 CDS 3843407 3843473 3843407 ID=Msa1228350-mRNA-1:cds;Parent=Msa1228350-mRNA-1
chr8_2 CDS 3844744 3844819 3844744 ID=Msa1228350-mRNA-1:cds;Parent=Msa1228350-mRNA-1
chr8_2 CDS 3844906 3845120 3844906 ID=Msa1228350-mRNA-1:cds;Parent=Msa1228350-mRNA-1
chr8_2 CDS 3845273 3845382 3845273 ID=Msa1228350-mRNA-1:cds;Parent=Msa1228350-mRNA-1
chr8_2 CDS 3845812 3845920 3845812 ID=Msa1228350-mRNA-1:cds;Parent=Msa1228350-mRNA-1
chr8_2 CDS 3846026 3846102 3846026 ID=Msa1228350-mRNA-1:cds;Parent=Msa1228350-mRNA-1
chr8_2 CDS 3846592 3846711 3846592 ID=Msa1228350-mRNA-1:cds;Parent=Msa1228350-mRNA-1
chr8_2 three_prime_UTR 3846712 3846853 3846712 ID=Msa1228350-mRNA-1:three_prime_utr;Parent=Msa1228350-mRNA-1
Gene Sequence

>Msa1228350

ATGCTACCGCTCTTATCTTCACCATCTTCTTCTTCTTCTTCTTCTTCACTCATGCAATCTTTTCCATTAAAATTCCTTTGTACAGTACAAGGACAAGGACAATCAACTCATGGAGGCACTAATAAAAAACCAAAGGATTCCATAGTGCAGGATAACACCATATTACATCCTGAGAAAGTATTAAGGAGGAAACTTGCGCTTTCTGTTTTGGTCTCAACTTGTGTTTTTCCAACTTTATCTTCTCATGCAAAGACCAAAAATATGAATCCGTATAATGAAAAACGTGTCTTGCAACAAAACAAGAATATACAAAAACAAAACAACGCACCAGATGACTTCCCAAATTTTATTAGAGAAGGTTTTGAAGTCAAAGTAATAGCACCAGATAACTATATAACGCGTGATTCGGGGCTCATTTACCGAGATTTTGAAGTTGGTACAGGTGATTGTCCAAAGGATGGTCAGCAGGTCACATTTCACTATGTTGGCTATAATGAATCCGGCCGGCGTATTGACAGCACTTATTTACAGGGTTCTCCGGCCAAAATTCGCATGGGTAACAAGGCATTGGTTCCAGGATTTGAGGAAGGAATTAGAGACATGAGAGCAGGTGGAAAGAGAAGAATAATTATTCCTCCTGATCTTGGACCCCCGGTAGGACCTTCAACATTTTTCAGCTCAAAACAATTTGAAGTTTTTGATGTTGAATTATTAAGCATCCAAAACTGTGAAAGAAGAACCATAGGATTTTACTCTGATGTTGTATGCAATTGA

Protein sequence

>Msa1228350

MLPLLSSPSSSSSSSSLMQSFPLKFLCTVQGQGQSTHGGTNKKPKDSIVQDNTILHPEKVLRRKLALSVLVSTCVFPTLSSHAKTKNMNPYNEKRVLQQNKNIQKQNNAPDDFPNFIREGFEVKVIAPDNYITRDSGLIYRDFEVGTGDCPKDGQQVTFHYVGYNESGRRIDSTYLQGSPAKIRMGNKALVPGFEEGIRDMRAGGKRRIIIPPDLGPPVGPSTFFSSKQFEVFDVELLSIQNCERRTIGFYSDVVCN*