AlfalfaGEDB | Msa1228350

M. sativa cultivar zhongmu-4 / Msa1228350

KEGG: -
GO: GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019684 GO:0022607 GO:0031977 GO:0034622 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0055114 GO:0061077 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:0140096 GO:1901363 GO:1901564
PFAM: PF00254.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1228350	XP_024627994.1	95.720	257	7	1	1	257	1	253	1.88e-180	506

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1228350	sp\|Q0WRJ7\|FK202_ARATH	63.118	263	70	5	1	257	1	242	2.92e-107	313

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1228350	A0A072TLV5	97.021	235	7	0	23	257	236	470	7.77e-169	484

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001510	Msa1228350	0.814755	1.310731e-51	-8.615850e-47
Msa0004340	Msa1228350	0.844862	5.813254e-59	-8.615850e-47
Msa0006050	Msa1228350	0.836193	1.079971e-56	-8.615850e-47
Msa0007570	Msa1228350	0.803560	3.289183e-49	-8.615850e-47
Msa0008250	Msa1228350	0.817435	3.302397e-52	-8.615850e-47
Msa0012380	Msa1228350	0.900278	8.595939e-78	-8.615850e-47
Msa0014960	Msa1228350	0.800857	1.184021e-48	-8.615850e-47
Msa0015070	Msa1228350	-0.814146	1.787744e-51	-8.615850e-47
Msa0017980	Msa1228350	0.826863	2.147262e-54	-8.615850e-47
Msa0018870	Msa1228350	0.804100	2.540162e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1228350	MtrunA17_Chr8g0335211	97.608	209	5	0	49	257	12	220	1.49e-154	429
Msa1228350	MtrunA17_Chr4g0033841	40.449	89	53	0	132	220	108	196	5.89e-14	69.3
Msa1228350	MtrunA17_Chr7g0214751	30.201	149	71	5	124	240	90	237	1.98e-12	65.1
Msa1228350	MtrunA17_Chr4g0052911	33.600	125	71	2	127	239	114	238	2.23e-11	62.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1228350	AT3G60370.1	63.118	263	70	5	1	257	1	242	2.96e-108	313
Msa1228350	AT3G60370.2	63.118	263	70	5	1	257	30	271	1.04e-107	312
Msa1228350	AT2G43560.2	43.820	89	50	0	132	220	46	134	9.34e-16	73.2
Msa1228350	AT2G43560.1	39.640	111	66	1	110	220	81	190	9.92e-16	74.3
Msa1228350	AT4G19830.1	29.932	147	70	4	132	245	83	229	3.05e-13	67.8
Msa1228350	AT5G13410.1	31.788	151	70	5	122	240	104	253	5.26e-12	64.7

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Find 51 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTGCTGACCATCCTT+TGG	0.437003	8_2:-3845365	None:intergenic
AAATTCCTTTGTACAGTACA+AGG	0.543326	8_2:+3844746	Msa1228350:CDS
AACATCAGAGTAAAATCCTA+TGG	0.519964	8_2:-3846677	None:intergenic
AACTATATAACGCGTGATTC+GGG	0.213117	8_2:+3845302	Msa1228350:CDS
AACTGTGAAAGAAGAACCAT+AGG	0.596337	8_2:+3846661	Msa1228350:CDS
AATAAGTGCTGTCAATACGC+CGG	0.677404	8_2:-3845847	None:intergenic
ACAGGTGATTGTCCAAAGGA+TGG	0.620639	8_2:+3845353	Msa1228350:CDS
ACTATATAACGCGTGATTCG+GGG	0.601130	8_2:+3845303	Msa1228350:CDS
AGTGCTGTCAATACGCCGGC+CGG	0.518095	8_2:-3845843	None:intergenic
ATAAAATTTGGGAAGTCATC+TGG	0.374287	8_2:-3845090	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAACAAATTAGGGTATGTT+TGG	+	chr8_2:3843808-3843827	Msa1228350:intron	30.0%
TTGACTAAAAAAGACCTGTT+CGG	+	chr8_2:3843873-3843892	Msa1228350:intron	30.0%
AAATAATCAATAAGCTCGTG+AGG	-	chr8_2:3843913-3843932	None:intergenic	30.0%
ATAGGACTAAGATAGTTTAG+AGG	+	chr8_2:3844143-3844162	Msa1228350:intron	30.0%
TTCCATTGCACTATAGTTTA+GGG	+	chr8_2:3844180-3844199	Msa1228350:intron	30.0%
GAGCTATAGTGTTTAAACAA+CGG	+	chr8_2:3844218-3844237	Msa1228350:intron	30.0%
TTGTGGAAATAAGCTGAAAA+TGG	+	chr8_2:3844355-3844374	Msa1228350:intron	30.0%
CTTTATCAGAATACCAAATC+AGG	-	chr8_2:3844706-3844725	None:intergenic	30.0%
AAATTCCTTTGTACAGTACA+AGG	+	chr8_2:3844746-3844765	Msa1228350:CDS	30.0%
AGGCACTAATAAAAAACCAA+AGG	+	chr8_2:3844790-3844809	Msa1228350:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	3843371	3846853	3843371	ID=Msa1228350;Name=Msa1228350
chr8_2	mRNA	3843371	3846853	3843371	ID=Msa1228350-mRNA-1;Parent=Msa1228350;Name=Msa1228350-mRNA-1;_AED=0.11;_eAED=0.11;_QI=36\|1\|1\|1\|0.83\|0.85\|7\|142\|257
chr8_2	exon	3843371	3843473	3843371	ID=Msa1228350-mRNA-1:exon:1200;Parent=Msa1228350-mRNA-1
chr8_2	exon	3844744	3844819	3844744	ID=Msa1228350-mRNA-1:exon:1201;Parent=Msa1228350-mRNA-1
chr8_2	exon	3844906	3845120	3844906	ID=Msa1228350-mRNA-1:exon:1202;Parent=Msa1228350-mRNA-1
chr8_2	exon	3845273	3845382	3845273	ID=Msa1228350-mRNA-1:exon:1203;Parent=Msa1228350-mRNA-1
chr8_2	exon	3845812	3845920	3845812	ID=Msa1228350-mRNA-1:exon:1204;Parent=Msa1228350-mRNA-1
chr8_2	exon	3846026	3846102	3846026	ID=Msa1228350-mRNA-1:exon:1205;Parent=Msa1228350-mRNA-1
chr8_2	exon	3846592	3846853	3846592	ID=Msa1228350-mRNA-1:exon:1206;Parent=Msa1228350-mRNA-1
chr8_2	five_prime_UTR	3843371	3843406	3843371	ID=Msa1228350-mRNA-1:five_prime_utr;Parent=Msa1228350-mRNA-1
chr8_2	CDS	3843407	3843473	3843407	ID=Msa1228350-mRNA-1:cds;Parent=Msa1228350-mRNA-1
chr8_2	CDS	3844744	3844819	3844744	ID=Msa1228350-mRNA-1:cds;Parent=Msa1228350-mRNA-1
chr8_2	CDS	3844906	3845120	3844906	ID=Msa1228350-mRNA-1:cds;Parent=Msa1228350-mRNA-1
chr8_2	CDS	3845273	3845382	3845273	ID=Msa1228350-mRNA-1:cds;Parent=Msa1228350-mRNA-1
chr8_2	CDS	3845812	3845920	3845812	ID=Msa1228350-mRNA-1:cds;Parent=Msa1228350-mRNA-1
chr8_2	CDS	3846026	3846102	3846026	ID=Msa1228350-mRNA-1:cds;Parent=Msa1228350-mRNA-1
chr8_2	CDS	3846592	3846711	3846592	ID=Msa1228350-mRNA-1:cds;Parent=Msa1228350-mRNA-1
chr8_2	three_prime_UTR	3846712	3846853	3846712	ID=Msa1228350-mRNA-1:three_prime_utr;Parent=Msa1228350-mRNA-1

Gene Sequence

>Msa1228350

ATGCTACCGCTCTTATCTTCACCATCTTCTTCTTCTTCTTCTTCTTCACTCATGCAATCTTTTCCATTAAAATTCCTTTGTACAGTACAAGGACAAGGACAATCAACTCATGGAGGCACTAATAAAAAACCAAAGGATTCCATAGTGCAGGATAACACCATATTACATCCTGAGAAAGTATTAAGGAGGAAACTTGCGCTTTCTGTTTTGGTCTCAACTTGTGTTTTTCCAACTTTATCTTCTCATGCAAAGACCAAAAATATGAATCCGTATAATGAAAAACGTGTCTTGCAACAAAACAAGAATATACAAAAACAAAACAACGCACCAGATGACTTCCCAAATTTTATTAGAGAAGGTTTTGAAGTCAAAGTAATAGCACCAGATAACTATATAACGCGTGATTCGGGGCTCATTTACCGAGATTTTGAAGTTGGTACAGGTGATTGTCCAAAGGATGGTCAGCAGGTCACATTTCACTATGTTGGCTATAATGAATCCGGCCGGCGTATTGACAGCACTTATTTACAGGGTTCTCCGGCCAAAATTCGCATGGGTAACAAGGCATTGGTTCCAGGATTTGAGGAAGGAATTAGAGACATGAGAGCAGGTGGAAAGAGAAGAATAATTATTCCTCCTGATCTTGGACCCCCGGTAGGACCTTCAACATTTTTCAGCTCAAAACAATTTGAAGTTTTTGATGTTGAATTATTAAGCATCCAAAACTGTGAAAGAAGAACCATAGGATTTTACTCTGATGTTGTATGCAATTGA

Protein sequence

>Msa1228350

MLPLLSSPSSSSSSSSLMQSFPLKFLCTVQGQGQSTHGGTNKKPKDSIVQDNTILHPEKVLRRKLALSVLVSTCVFPTLSSHAKTKNMNPYNEKRVLQQNKNIQKQNNAPDDFPNFIREGFEVKVIAPDNYITRDSGLIYRDFEVGTGDCPKDGQQVTFHYVGYNESGRRIDSTYLQGSPAKIRMGNKALVPGFEEGIRDMRAGGKRRIIIPPDLGPPVGPSTFFSSKQFEVFDVELLSIQNCERRTIGFYSDVVCN*