AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1228460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228460 MtrunA17_Chr8g0335211 94.545 220 10 1 1 218 1 220 2.05e-155 429
Msa1228460 MtrunA17_Chr4g0033841 40.449 89 53 0 93 181 108 196 2.93e-14 69.3
Msa1228460 MtrunA17_Chr7g0214751 30.201 149 71 5 85 201 90 237 2.08e-12 64.3
Msa1228460 MtrunA17_Chr4g0052911 33.871 124 70 2 89 200 115 238 1.96e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228460 AT3G60370.1 77.273 198 43 2 23 218 45 242 4.75e-107 308
Msa1228460 AT3G60370.2 77.273 198 43 2 23 218 74 271 9.50e-107 308
Msa1228460 AT2G43560.2 43.820 89 50 0 93 181 46 134 5.04e-16 73.2
Msa1228460 AT2G43560.1 43.820 89 50 0 93 181 102 190 6.42e-16 73.9
Msa1228460 AT4G19830.1 29.932 147 70 4 93 206 83 229 2.67e-13 67.0
Msa1228460 AT5G13410.1 31.788 151 70 5 83 201 104 253 4.14e-12 63.9

Find 51 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCTTCTCTAATAAAATT+TGG 0.135782 8_2:+3909951 None:intergenic
TGGTTCTTCTTTCACAGTTT+TGG 0.207260 8_2:+3908396 None:intergenic
AACTATATAACGCGTGATTC+GGG 0.213117 8_2:-3909751 Msa1228460:CDS
GAAACTTGCGCTTTCTGTTT+TGG 0.240114 8_2:-3910102 Msa1228460:CDS
TATTGACAGCACTTATTTAC+AGG 0.273970 8_2:-3909199 Msa1228460:CDS
TACTTTCTCAGGATGTAATA+TGG 0.285948 8_2:+3910133 None:intergenic
CTTGTTACCCATGCGAATTT+TGG 0.288794 8_2:+3909167 None:intergenic
TACCTTCTCTAATAAAATTT+GGG 0.314007 8_2:+3909952 None:intergenic
ATAATTATTCCTCCTGATCT+TGG 0.323150 8_2:-3908980 Msa1228460:CDS
TAACTATATAACGCGTGATT+CGG 0.332001 8_2:-3909752 Msa1228460:CDS
TTCCTCCTTAATACTTTCTC+AGG 0.354488 8_2:+3910122 None:intergenic
CTTCAGCACAAATATTAGTT+AGG 0.355241 8_2:-3908325 Msa1228460:three_prime_UTR
TACATCCTGAGAAAGTATTA+AGG 0.373534 8_2:-3910127 Msa1228460:CDS
CACTCTTACATGGAATCCTT+TGG 0.373861 8_2:+3910246 None:intergenic
ATAAAATTTGGGAAGTCATC+TGG 0.374287 8_2:+3909963 None:intergenic
GGTAACAAGGCATTGGTTCC+AGG 0.384493 8_2:-3909153 Msa1228460:intron
TCACGCGTTATATAGTTATC+TGG 0.398419 8_2:+3909757 None:intergenic
CACTTATTTACAGGGTTCTC+CGG 0.422942 8_2:-3909190 Msa1228460:CDS
AAAACCTGCTGACCATCCTT+TGG 0.437003 8_2:+3909688 None:intergenic
CAGGTCACATTTCACTATGT+TGG 0.449348 8_2:-3909243 Msa1228460:CDS
TTTGCATGAGAAGATAAAGT+TGG 0.475317 8_2:+3910062 None:intergenic
TAAATTATGATCTTGCTTCG+AGG 0.476673 8_2:-3908299 Msa1228460:three_prime_UTR
TATGTTGGCTATAATGAATC+CGG 0.489665 8_2:-3909228 Msa1228460:CDS
TCCTCCTGATCTTGGACCCC+CGG 0.496637 8_2:-3908972 Msa1228460:intron
CAAAATTCGCATGGGTAACA+AGG 0.517528 8_2:-3909166 Msa1228460:CDS
AGTGCTGTCAATACGCCGGC+CGG 0.518095 8_2:+3909209 None:intergenic
AACATCAGAGTAAAATCCTA+TGG 0.519964 8_2:+3908376 None:intergenic
TTGTCCAAAGGATGGTCAGC+AGG 0.523009 8_2:-3909692 Msa1228460:intron
TCGCATGGGTAACAAGGCAT+TGG 0.532556 8_2:-3909160 Msa1228460:CDS
AAATTCCTTTGTACAGTACA+AGG 0.543326 8_2:-3910309 Msa1228460:five_prime_UTR
CTGTACCAACTTCAAAATCT+CGG 0.552576 8_2:+3909719 None:intergenic
TTCTCCGGCCAAAATTCGCA+TGG 0.552997 8_2:-3909175 Msa1228460:CDS
GGAATTAGAGACATGAGAGC+AGG 0.554241 8_2:-3909016 Msa1228460:CDS
TCTGATGTAGGATTTGAGGA+AGG 0.571358 8_2:-3909037 Msa1228460:intron
ATTAGAGACATGAGAGCAGG+TGG 0.575545 8_2:-3909013 Msa1228460:CDS
CTTGTCCTTGTACTGTACAA+AGG 0.580017 8_2:+3910304 None:intergenic
ATTGACAGCACTTATTTACA+GGG 0.593497 8_2:-3909198 Msa1228460:CDS
AACTGTGAAAGAAGAACCAT+AGG 0.596337 8_2:-3908392 Msa1228460:CDS
CTGTTGTCAATAATCGAGAA+AGG 0.598520 8_2:-3908276 Msa1228460:three_prime_UTR
ACTATATAACGCGTGATTCG+GGG 0.601130 8_2:-3909750 Msa1228460:CDS
AAGGAAGGACAATCAACTCA+TGG 0.604845 8_2:-3910284 Msa1228460:exon
CTTTGTACAGTACAAGGACA+AGG 0.607474 8_2:-3910303 Msa1228460:five_prime_UTR
ACAGGTGATTGTCCAAAGGA+TGG 0.620639 8_2:-3909700 Msa1228460:CDS
GTACAGTACAAGGACAAGGA+AGG 0.626354 8_2:-3910299 Msa1228460:five_prime_UTR
GAAGATGGTGAAGATAAGAG+CGG 0.626564 8_2:+3911646 None:intergenic
TCTCCGGCCAAAATTCGCAT+GGG 0.643150 8_2:-3909174 Msa1228460:CDS
ATCCTGAGAAAGTATTAAGG+AGG 0.647507 8_2:-3910124 Msa1228460:CDS
TGGTACAGGTGATTGTCCAA+AGG 0.660317 8_2:-3909704 Msa1228460:CDS
AATAAGTGCTGTCAATACGC+CGG 0.677404 8_2:+3909205 None:intergenic
TTGGCTATAATGAATCCGGC+CGG 0.687904 8_2:-3909224 Msa1228460:CDS
GAAGGACAATCAACTCATGG+AGG 0.735147 8_2:-3910281 Msa1228460:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTTAATATTTTAGTTGA+TGG - chr8_2:3908481-3908500 Msa1228460:intron 15.0%
!!! AAGTTAATATTTTAGTTGAT+GGG - chr8_2:3908482-3908501 Msa1228460:intron 15.0%
!!! TAATTTTCATCTTAATTGTT+TGG - chr8_2:3910286-3910305 Msa1228460:exon 15.0%
!!! AATTTTCATCTTAATTGTTT+GGG - chr8_2:3910287-3910306 Msa1228460:exon 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG + chr8_2:3911084-3911103 None:intergenic 15.0%
!!! TCACATAATTTTTTACATTA+CGG - chr8_2:3911356-3911375 Msa1228460:intron 15.0%
!! AATTGAAACACATATATGTA+TGG + chr8_2:3908399-3908418 None:intergenic 20.0%
!!! TATTTTTTTCTTTCTTTCTG+AGG - chr8_2:3908440-3908459 Msa1228460:CDS 20.0%
!! TTGAAAAGTTACAACAAATT+AGG - chr8_2:3908654-3908673 Msa1228460:intron 20.0%
!! TGAAAAGTTACAACAAATTA+GGG - chr8_2:3908655-3908674 Msa1228460:intron 20.0%
!! TATAAGCAATTCTTAAGTTT+AGG - chr8_2:3908953-3908972 Msa1228460:intron 20.0%
!! AAACAATTCTATTTGTTTGT+TGG - chr8_2:3908997-3909016 Msa1228460:CDS 20.0%
!! AACAATTCTATTTGTTTGTT+GGG - chr8_2:3908998-3909017 Msa1228460:CDS 20.0%
!! GTAATAAATACTTTCAACAT+TGG + chr8_2:3909300-3909319 None:intergenic 20.0%
!! ATTTATTGAAGAGATTAGAA+GGG + chr8_2:3909357-3909376 None:intergenic 20.0%
!! AATTTATTGAAGAGATTAGA+AGG + chr8_2:3909358-3909377 None:intergenic 20.0%
!! TAACTATCATACAATGAATT+AGG + chr8_2:3909459-3909478 None:intergenic 20.0%
!! ATTTCATTAATATCCTTCTA+AGG - chr8_2:3909715-3909734 Msa1228460:CDS 20.0%
!! TTTCATTAATATCCTTCTAA+GGG - chr8_2:3909716-3909735 Msa1228460:CDS 20.0%
!!! GCATTTTTTGTTTGTATTTA+TGG - chr8_2:3909739-3909758 Msa1228460:CDS 20.0%
!!! ATTATACGGATTCATATTTT+TGG + chr8_2:3909879-3909898 None:intergenic 20.0%
!! TACCTTCTCTAATAAAATTT+GGG + chr8_2:3909964-3909983 None:intergenic 20.0%
!! TTACCTTCTCTAATAAAATT+TGG + chr8_2:3909965-3909984 None:intergenic 20.0%
!! AATCATGTATGAAAAAACAA+TGG + chr8_2:3909991-3910010 None:intergenic 20.0%
!! TAAAGAAAGAAATAGTTGAT+TGG + chr8_2:3910266-3910285 None:intergenic 20.0%
!! AAGAAGTTAACACAAATATT+AGG - chr8_2:3910312-3910331 Msa1228460:five_prime_UTR 20.0%
!! TTAGCAATAATTATCAAACA+TGG + chr8_2:3911019-3911038 None:intergenic 20.0%
! ATATATGTATGGTATGAAAG+TGG + chr8_2:3908388-3908407 None:intergenic 25.0%
!! AATTTTCAGTTAAGATTGCA+GGG + chr8_2:3908881-3908900 None:intergenic 25.0%
!! TAATTTTCAGTTAAGATTGC+AGG + chr8_2:3908882-3908901 None:intergenic 25.0%
! ATAAACTATCTATCCAAACA+GGG + chr8_2:3909122-3909141 None:intergenic 25.0%
! AATAAACTATCTATCCAAAC+AGG + chr8_2:3909123-3909142 None:intergenic 25.0%
!! AAATACTTTCAACATTGGTT+GGG + chr8_2:3909295-3909314 None:intergenic 25.0%
! TAAATACTTTCAACATTGGT+TGG + chr8_2:3909296-3909315 None:intergenic 25.0%
!! ATTACAGAGCACAAAATTTT+GGG + chr8_2:3909436-3909455 None:intergenic 25.0%
!!! TGATAAAGCATTTCCTTTTT+TGG - chr8_2:3909576-3909595 Msa1228460:intron 25.0%
! AAAATAATGTCACTCTTACA+TGG + chr8_2:3909680-3909699 None:intergenic 25.0%
!! AGTGACATTATTTTCTTGAA+TGG - chr8_2:3909686-3909705 Msa1228460:intron 25.0%
! TTCATTAATATCCTTCTAAG+GGG - chr8_2:3909717-3909736 Msa1228460:CDS 25.0%
!! AAGACACGTTTTTCATTATA+CGG + chr8_2:3909893-3909912 None:intergenic 25.0%
!! TTCCCAAATTTTATTAGAGA+AGG - chr8_2:3909959-3909978 Msa1228460:CDS 25.0%
! AATACTACTACTTGTATGTT+TGG + chr8_2:3910504-3910523 None:intergenic 25.0%
! AAAACATTGCCTATACATAA+GGG + chr8_2:3911254-3911273 None:intergenic 25.0%
! TAAAACATTGCCTATACATA+AGG + chr8_2:3911255-3911274 None:intergenic 25.0%
!! ACATGCATAGTTTAAAATTG+TGG + chr8_2:3911401-3911420 None:intergenic 25.0%
!! AATTTTAAACTATGCATGTG+TGG - chr8_2:3911402-3911421 Msa1228460:intron 25.0%
!! ATTTTAAACTATGCATGTGT+GGG - chr8_2:3911403-3911422 Msa1228460:intron 25.0%
!!! AATCTTGTTTTGTATTTTGC+AGG - chr8_2:3911430-3911449 Msa1228460:intron 25.0%
! ATTCTGATAGTTGATATGCA+AGG - chr8_2:3908573-3908592 Msa1228460:intron 30.0%
! ATTGTTGCTGTTAAGGTTAA+TGG - chr8_2:3908630-3908649 Msa1228460:intron 30.0%
ACAACAAATTAGGGTATGTT+TGG - chr8_2:3908664-3908683 Msa1228460:intron 30.0%
TTGACTAAAAAAGACCTGTT+CGG - chr8_2:3908729-3908748 Msa1228460:intron 30.0%
AAATAATCAATAAGCTCGTG+AGG + chr8_2:3908769-3908788 None:intergenic 30.0%
! ATTTTCAGTTAAGATTGCAG+GGG + chr8_2:3908880-3908899 None:intergenic 30.0%
! TTCTATTTGTTTGTTGGGAT+AGG - chr8_2:3909003-3909022 Msa1228460:CDS 30.0%
ATAGGACTAAGATAGTTTAG+AGG - chr8_2:3909021-3909040 Msa1228460:CDS 30.0%
TTCCATTGCACTATAGTTTA+GGG - chr8_2:3909058-3909077 Msa1228460:intron 30.0%
GAGCTATAGTGTTTAAACAA+CGG - chr8_2:3909096-3909115 Msa1228460:intron 30.0%
TTGTGGAAATAAGCTGAAAA+TGG - chr8_2:3909233-3909252 Msa1228460:CDS 30.0%
!!! CACAAAATTTTGGGTTTGTT+TGG + chr8_2:3909427-3909446 None:intergenic 30.0%
! GATTACAGAGCACAAAATTT+TGG + chr8_2:3909437-3909456 None:intergenic 30.0%
TCCATGTTTATCTAACTACT+TGG - chr8_2:3909548-3909567 Msa1228460:intron 30.0%
ACCAAGTAGTTAGATAAACA+TGG + chr8_2:3909552-3909571 None:intergenic 30.0%
! AGGAATTTTACTGCCAAAAA+AGG + chr8_2:3909592-3909611 None:intergenic 30.0%
AAATTCCTTTGTACAGTACA+AGG - chr8_2:3909604-3909623 Msa1228460:intron 30.0%
TACTTTCTCAGGATGTAATA+TGG + chr8_2:3909783-3909802 None:intergenic 30.0%
!! TACATCCTGAGAAAGTATTA+AGG - chr8_2:3909786-3909805 Msa1228460:intron 30.0%
TTTGCATGAGAAGATAAAGT+TGG + chr8_2:3909854-3909873 None:intergenic 30.0%
ATAAAATTTGGGAAGTCATC+TGG + chr8_2:3909953-3909972 None:intergenic 30.0%
AAAACAACTGTAACACTTAC+AGG + chr8_2:3910064-3910083 None:intergenic 30.0%
!! GTTGTTTTGTGTCAAACTTT+TGG - chr8_2:3910076-3910095 Msa1228460:CDS 30.0%
! AACTTTTGGATATGATGTTC+TGG - chr8_2:3910090-3910109 Msa1228460:CDS 30.0%
!!! GGTTTGTTAATATGCTTTTC+AGG - chr8_2:3910111-3910130 Msa1228460:CDS 30.0%
TAACTATATAACGCGTGATT+CGG - chr8_2:3910161-3910180 Msa1228460:intron 30.0%
!!! ATTTACCGAGATTTTGAAGT+TGG - chr8_2:3910189-3910208 Msa1228460:intron 30.0%
! ATTTTGCAGTGAAAACAAAC+AGG + chr8_2:3910381-3910400 None:intergenic 30.0%
!! CTTGATGAGTTTGTTGAAAT+GGG - chr8_2:3910546-3910565 Msa1228460:intron 30.0%
!! TTGATGAGTTTGTTGAAATG+GGG - chr8_2:3910547-3910566 Msa1228460:intron 30.0%
TTTGTTGAAATGGGGAAAAT+TGG - chr8_2:3910555-3910574 Msa1228460:intron 30.0%
ATTGGAAATTGATGTTTGAG+TGG - chr8_2:3910573-3910592 Msa1228460:intron 30.0%
! TATGTTGGCTATAATGAATC+CGG - chr8_2:3910685-3910704 Msa1228460:intron 30.0%
TATTGACAGCACTTATTTAC+AGG - chr8_2:3910714-3910733 Msa1228460:intron 30.0%
ATTGACAGCACTTATTTACA+GGG - chr8_2:3910715-3910734 Msa1228460:intron 30.0%
! CTAAATCTATCCTTTTTACC+TGG + chr8_2:3910781-3910800 None:intergenic 30.0%
AAATCCTACATCAGAAAATG+TGG + chr8_2:3910871-3910890 None:intergenic 30.0%
! ATTTTCTGATGTAGGATTTG+AGG - chr8_2:3910872-3910891 Msa1228460:intron 30.0%
ATAATTATTCCTCCTGATCT+TGG - chr8_2:3910933-3910952 Msa1228460:intron 30.0%
AAAGAGAATAAGAGATGTAC+CGG + chr8_2:3910963-3910982 None:intergenic 30.0%
AACTTATTCCGAACATATGT+CGG - chr8_2:3911113-3911132 Msa1228460:intron 30.0%
! ATGTCTTTGATTAGAAGTGT+CGG - chr8_2:3911168-3911187 Msa1228460:intron 30.0%
GTTGCTAAAAACTTATGCTA+AGG - chr8_2:3911200-3911219 Msa1228460:intron 30.0%
GTTTATCTTCCCTTATGTAT+AGG - chr8_2:3911242-3911261 Msa1228460:intron 30.0%
!! TTGTTTTGTATTTTGCAGGT+AGG - chr8_2:3911434-3911453 Msa1228460:intron 30.0%
TTTGAGCTGAAAAATGTTGA+AGG + chr8_2:3911461-3911480 None:intergenic 30.0%
AACATCAGAGTAAAATCCTA+TGG + chr8_2:3911540-3911559 None:intergenic 30.0%
CTTCAGCACAAATATTAGTT+AGG - chr8_2:3911588-3911607 Msa1228460:intron 30.0%
TAAATTATGATCTTGCTTCG+AGG - chr8_2:3911614-3911633 Msa1228460:five_prime_UTR 30.0%
GAAGAAGAAGAAGAAGAAGA+TGG + chr8_2:3908285-3908304 None:intergenic 35.0%
CGAAGTTGAATTTATGTTGC+TGG - chr8_2:3908534-3908553 Msa1228460:intron 35.0%
! AACTCTCATTGTTGCTGTTA+AGG - chr8_2:3908623-3908642 Msa1228460:intron 35.0%
! TAAGATAGTTTAGAGGTGCA+GGG - chr8_2:3909028-3909047 Msa1228460:CDS 35.0%
GTTCCATTGCACTATAGTTT+AGG - chr8_2:3909057-3909076 Msa1228460:intron 35.0%
TCCATTGCACTATAGTTTAG+GGG - chr8_2:3909059-3909078 Msa1228460:intron 35.0%
!! GTTGTTTTCAGAAGCTATCA+TGG - chr8_2:3909205-3909224 Msa1228460:CDS 35.0%
AGAGATTAGAAGGGTTATGT+TGG + chr8_2:3909348-3909367 None:intergenic 35.0%
! GAGGCACTAATAAAAACCAA+AGG - chr8_2:3909651-3909670 Msa1228460:intron 35.0%
AACAAAAAATGCCCCTTAGA+AGG + chr8_2:3909731-3909750 None:intergenic 35.0%
TGTATTTATGGATAGAGTGC+AGG - chr8_2:3909751-3909770 Msa1228460:CDS 35.0%
!! ATCCTGAGAAAGTATTAAGG+AGG - chr8_2:3909789-3909808 Msa1228460:intron 35.0%
TTCCTCCTTAATACTTTCTC+AGG + chr8_2:3909794-3909813 None:intergenic 35.0%
TCACGCGTTATATAGTTATC+TGG + chr8_2:3910159-3910178 None:intergenic 35.0%
AACTATATAACGCGTGATTC+GGG - chr8_2:3910162-3910181 Msa1228460:intron 35.0%
CTGTACCAACTTCAAAATCT+CGG + chr8_2:3910197-3910216 None:intergenic 35.0%
AATTCTTCTAGACGTACGTT+TGG - chr8_2:3910398-3910417 Msa1228460:intron 35.0%
GAAATAAGGAAGCTACCAAT+TGG + chr8_2:3910433-3910452 None:intergenic 35.0%
! CAAGTAGTAGTATTTTGCAG+TGG - chr8_2:3910510-3910529 Msa1228460:intron 35.0%
CCATTTCAACAAACTCATCA+AGG + chr8_2:3910548-3910567 None:intergenic 35.0%
!! CCTTGATGAGTTTGTTGAAA+TGG - chr8_2:3910545-3910564 Msa1228460:intron 35.0%
TGACAAAAAGCTTTCGTCAT+TGG - chr8_2:3910828-3910847 Msa1228460:intron 35.0%
! TTCTCCACATTTTCTGATGT+AGG - chr8_2:3910864-3910883 Msa1228460:intron 35.0%
AAGAGAATAAGAGATGTACC+GGG + chr8_2:3910962-3910981 None:intergenic 35.0%
CTTCTAATCAAAGACATGCT+TGG + chr8_2:3911165-3911184 None:intergenic 35.0%
TTACATTACGGCCACAATTA+TGG - chr8_2:3911368-3911387 Msa1228460:intron 35.0%
! TGGTTCTTCTTTCACAGTTT+TGG + chr8_2:3911520-3911539 None:intergenic 35.0%
AACTGTGAAAGAAGAACCAT+AGG - chr8_2:3911521-3911540 Msa1228460:intron 35.0%
CTGTTGTCAATAATCGAGAA+AGG - chr8_2:3911637-3911656 Msa1228460:five_prime_UTR 35.0%
GAAGATGGTGAAGATAAGAG+CGG + chr8_2:3908270-3908289 None:intergenic 40.0%
! CTAAGATAGTTTAGAGGTGC+AGG - chr8_2:3909027-3909046 Msa1228460:CDS 40.0%
! AAGATAGTTTAGAGGTGCAG+GGG - chr8_2:3909029-3909048 Msa1228460:CDS 40.0%
ACCCCTAAACTATAGTGCAA+TGG + chr8_2:3909063-3909082 None:intergenic 40.0%
AAGCTATCATGGAAAGCTTG+TGG - chr8_2:3909216-3909235 Msa1228460:CDS 40.0%
CTTGTCCTTGTACTGTACAA+AGG + chr8_2:3909612-3909631 None:intergenic 40.0%
CTTTGTACAGTACAAGGACA+AGG - chr8_2:3909610-3909629 Msa1228460:intron 40.0%
AAGGAAGGACAATCAACTCA+TGG - chr8_2:3909629-3909648 Msa1228460:intron 40.0%
CACTCTTACATGGAATCCTT+TGG + chr8_2:3909670-3909689 None:intergenic 40.0%
! GAAACTTGCGCTTTCTGTTT+TGG - chr8_2:3909811-3909830 Msa1228460:intron 40.0%
ACTATATAACGCGTGATTCG+GGG - chr8_2:3910163-3910182 Msa1228460:intron 40.0%
!!! CGAGATTTTGAAGTTGGTAC+AGG - chr8_2:3910195-3910214 Msa1228460:intron 40.0%
GACAATTTCAGTTCTCAGTC+TGG + chr8_2:3910347-3910366 None:intergenic 40.0%
GTTTGGTTAGAAGCTCCAAT+TGG - chr8_2:3910415-3910434 Msa1228460:intron 40.0%
GCAATCTCGACGTTGAAATA+AGG + chr8_2:3910447-3910466 None:intergenic 40.0%
TTTCAACGTCGAGATTGCAT+TGG - chr8_2:3910449-3910468 Msa1228460:intron 40.0%
TTCAACGTCGAGATTGCATT+GGG - chr8_2:3910450-3910469 Msa1228460:intron 40.0%
ATAGTGAAATGTGACCTGCA+AGG + chr8_2:3910668-3910687 None:intergenic 40.0%
CAGGTCACATTTCACTATGT+TGG - chr8_2:3910670-3910689 Msa1228460:intron 40.0%
! AATAAGTGCTGTCAATACGC+CGG + chr8_2:3910711-3910730 None:intergenic 40.0%
CACTTATTTACAGGGTTCTC+CGG - chr8_2:3910723-3910742 Msa1228460:intron 40.0%
! CTTGTTACCCATGCGAATTT+TGG + chr8_2:3910749-3910768 None:intergenic 40.0%
CAAAATTCGCATGGGTAACA+AGG - chr8_2:3910747-3910766 Msa1228460:intron 40.0%
TCTGATGTAGGATTTGAGGA+AGG - chr8_2:3910876-3910895 Msa1228460:intron 40.0%
AGAGAATAAGAGATGTACCG+GGG + chr8_2:3910961-3910980 None:intergenic 40.0%
GGTGTCAACATGTACATGTT+CGG + chr8_2:3911063-3911082 None:intergenic 40.0%
GAGAGAGAGAGAGAGTTACA+TGG + chr8_2:3908333-3908352 None:intergenic 45.0%
AAGTAAGTGATGGTCCGAAC+AGG + chr8_2:3908746-3908765 None:intergenic 45.0%
! AGATAGTTTAGAGGTGCAGG+GGG - chr8_2:3909030-3909049 Msa1228460:CDS 45.0%
GTTTAAACAACGGCCCTGTT+TGG - chr8_2:3909106-3909125 Msa1228460:intron 45.0%
GTACAGTACAAGGACAAGGA+AGG - chr8_2:3909614-3909633 Msa1228460:intron 45.0%
GAAGGACAATCAACTCATGG+AGG - chr8_2:3909632-3909651 Msa1228460:intron 45.0%
CTTACAGGAGAGACATCACA+GGG + chr8_2:3910049-3910068 None:intergenic 45.0%
ACTTACAGGAGAGACATCAC+AGG + chr8_2:3910050-3910069 None:intergenic 45.0%
TGGTACAGGTGATTGTCCAA+AGG - chr8_2:3910209-3910228 Msa1228460:intron 45.0%
ACAGGTGATTGTCCAAAGGA+TGG - chr8_2:3910213-3910232 Msa1228460:intron 45.0%
AAAACCTGCTGACCATCCTT+TGG + chr8_2:3910228-3910247 None:intergenic 45.0%
TACAGTATACCATGCCTTGC+AGG - chr8_2:3910651-3910670 Msa1228460:intron 45.0%
TTGGCTATAATGAATCCGGC+CGG - chr8_2:3910689-3910708 Msa1228460:intron 45.0%
!! TTACCCATGCGAATTTTGGC+CGG + chr8_2:3910745-3910764 None:intergenic 45.0%
!! GGCATTGGTTCCAGGTAAAA+AGG - chr8_2:3910768-3910787 Msa1228460:intron 45.0%
GGAATTAGAGACATGAGAGC+AGG - chr8_2:3910897-3910916 Msa1228460:intron 45.0%
ATTAGAGACATGAGAGCAGG+TGG - chr8_2:3910900-3910919 Msa1228460:intron 45.0%
GAGAATAAGAGATGTACCGG+GGG + chr8_2:3910960-3910979 None:intergenic 45.0%
TCAAACATGGAAAGACTCGC+AGG + chr8_2:3911006-3911025 None:intergenic 45.0%
GTCTGACACCGACATATGTT+CGG + chr8_2:3911124-3911143 None:intergenic 45.0%
TTGCTTTCGCGATGTAGTTG+TGG - chr8_2:3911330-3911349 Msa1228460:intron 45.0%
GTGGCTCACAACCATAATTG+TGG + chr8_2:3911382-3911401 None:intergenic 45.0%
GCTCGTGAGGAAGTAAGTGA+TGG + chr8_2:3908756-3908775 None:intergenic 50.0%
TTGTCCAAAGGATGGTCAGC+AGG - chr8_2:3910221-3910240 Msa1228460:intron 50.0%
GAAATGTGACCTGCAAGGCA+TGG + chr8_2:3910663-3910682 None:intergenic 50.0%
TTCTCCGGCCAAAATTCGCA+TGG - chr8_2:3910738-3910757 Msa1228460:intron 50.0%
TCTCCGGCCAAAATTCGCAT+GGG - chr8_2:3910739-3910758 Msa1228460:intron 50.0%
TCGCATGGGTAACAAGGCAT+TGG - chr8_2:3910753-3910772 Msa1228460:intron 50.0%
!! GGTAACAAGGCATTGGTTCC+AGG - chr8_2:3910760-3910779 Msa1228460:intron 50.0%
CTCGCAGGTACAGTAGTGAA+TGG + chr8_2:3910991-3911010 None:intergenic 50.0%
AGTGCTGTCAATACGCCGGC+CGG + chr8_2:3910707-3910726 None:intergenic 60.0%
TCCTCCTGATCTTGGACCCC+CGG - chr8_2:3910941-3910960 Msa1228460:intron 60.0%
TGTACCGGGGGTCCAAGATC+AGG + chr8_2:3910948-3910967 None:intergenic 60.0%
ACCGGGGGTCCAAGATCAGG+AGG + chr8_2:3910945-3910964 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 3908222 3911713 3908222 ID=Msa1228460;Name=Msa1228460
chr8_2 mRNA 3908222 3911713 3908222 ID=Msa1228460-mRNA-1;Parent=Msa1228460;Name=Msa1228460-mRNA-1;_AED=0.06;_eAED=0.06;_QI=158|0.83|0.85|1|0.66|0.57|7|142|218
chr8_2 exon 3908222 3908483 3908222 ID=Msa1228460-mRNA-1:exon:1264;Parent=Msa1228460-mRNA-1
chr8_2 exon 3908973 3909049 3908973 ID=Msa1228460-mRNA-1:exon:1263;Parent=Msa1228460-mRNA-1
chr8_2 exon 3909154 3909262 3909154 ID=Msa1228460-mRNA-1:exon:1262;Parent=Msa1228460-mRNA-1
chr8_2 exon 3909693 3909802 3909693 ID=Msa1228460-mRNA-1:exon:1261;Parent=Msa1228460-mRNA-1
chr8_2 exon 3909955 3910162 3909955 ID=Msa1228460-mRNA-1:exon:1260;Parent=Msa1228460-mRNA-1
chr8_2 exon 3910255 3910333 3910255 ID=Msa1228460-mRNA-1:exon:1259;Parent=Msa1228460-mRNA-1
chr8_2 exon 3911602 3911713 3911602 ID=Msa1228460-mRNA-1:exon:1258;Parent=Msa1228460-mRNA-1
chr8_2 five_prime_UTR 3911602 3911713 3911602 ID=Msa1228460-mRNA-1:five_prime_utr;Parent=Msa1228460-mRNA-1
chr8_2 five_prime_UTR 3910288 3910333 3910288 ID=Msa1228460-mRNA-1:five_prime_utr;Parent=Msa1228460-mRNA-1
chr8_2 CDS 3910255 3910287 3910255 ID=Msa1228460-mRNA-1:cds;Parent=Msa1228460-mRNA-1
chr8_2 CDS 3909955 3910162 3909955 ID=Msa1228460-mRNA-1:cds;Parent=Msa1228460-mRNA-1
chr8_2 CDS 3909693 3909802 3909693 ID=Msa1228460-mRNA-1:cds;Parent=Msa1228460-mRNA-1
chr8_2 CDS 3909154 3909262 3909154 ID=Msa1228460-mRNA-1:cds;Parent=Msa1228460-mRNA-1
chr8_2 CDS 3908973 3909049 3908973 ID=Msa1228460-mRNA-1:cds;Parent=Msa1228460-mRNA-1
chr8_2 CDS 3908364 3908483 3908364 ID=Msa1228460-mRNA-1:cds;Parent=Msa1228460-mRNA-1
chr8_2 three_prime_UTR 3908222 3908363 3908222 ID=Msa1228460-mRNA-1:three_prime_utr;Parent=Msa1228460-mRNA-1
Gene Sequence

>Msa1228460

ATGGAGGCACTAATAAAAACCAAAGGATTCCATGATAACACCATATTACATCCTGAGAAAGTATTAAGGAGGAAACTTGCGCTTTCTGTTTTGGTCTCAACTTGTGTTTTTCCAACTTTATCTTCTCATGCAAAGACCAAAAATATGAATCCGTATAATGAAAAACGTGTCTTGCAACAAAACAAGAATATACAAAAACAAAACAACGCACCAGATGACTTCCCAAATTTTATTAGAGAAGGTTTTGAAGTCAAAGTAATAGCACCAGATAACTATATAACGCGTGATTCGGGGCTCATTTACCGAGATTTTGAAGTTGGTACAGGTGATTGTCCAAAGGATGGTCAGCAGGTCACATTTCACTATGTTGGCTATAATGAATCCGGCCGGCGTATTGACAGCACTTATTTACAGGGTTCTCCGGCCAAAATTCGCATGGGTAACAAGGCATTGGTTCCAGGATTTGAGGAAGGAATTAGAGACATGAGAGCAGGTGGAAAGAGAAGAATAATTATTCCTCCTGATCTTGGACCCCCGGTAGGACCTTCAACATTTTTCAGCTCAAAACAATTTGAAGTTTTTGATGTTGAATTATTAAGCATCCAAAACTGTGAAAGAAGAACCATAGGATTTTACTCTGATGTTGTATGCAATTGA

Protein sequence

>Msa1228460

MEALIKTKGFHDNTILHPEKVLRRKLALSVLVSTCVFPTLSSHAKTKNMNPYNEKRVLQQNKNIQKQNNAPDDFPNFIREGFEVKVIAPDNYITRDSGLIYRDFEVGTGDCPKDGQQVTFHYVGYNESGRRIDSTYLQGSPAKIRMGNKALVPGFEEGIRDMRAGGKRRIIIPPDLGPPVGPSTFFSSKQFEVFDVELLSIQNCERRTIGFYSDVVCN*