AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1255020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255020 MtrunA17_Chr8g0372981 98.246 228 2 1 1 228 1 226 9.86e-167 458
Msa1255020 MtrunA17_Chr5g0404551 85.714 196 27 1 33 228 19 213 5.03e-127 357
Msa1255020 MtrunA17_Chr1g0182331 78.505 214 42 2 15 228 7 216 3.48e-123 348
Msa1255020 MtrunA17_Chr8g0345781 80.296 203 39 1 26 228 16 217 5.46e-123 347
Msa1255020 MtrunA17_Chr1g0200691 64.777 247 37 4 8 215 50 285 2.83e-107 310
Msa1255020 MtrunA17_Chr7g0276441 81.818 165 30 0 64 228 29 193 1.99e-99 287
Msa1255020 MtrunA17_Chr1g0210921 48.276 87 40 3 147 228 12 98 4.16e-18 77.4
Msa1255020 MtrunA17_Chr2g0280151 31.696 224 114 9 6 197 33 249 4.78e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255020 AT3G53620.1 80.189 212 38 2 17 228 9 216 8.05e-125 352
Msa1255020 AT1G01050.1 81.000 200 37 1 29 228 14 212 3.27e-123 348
Msa1255020 AT1G01050.2 81.000 200 37 1 29 228 14 212 3.27e-123 348
Msa1255020 AT2G46860.1 75.455 220 48 2 9 228 3 216 3.02e-121 343
Msa1255020 AT2G18230.1 79.500 200 40 1 29 228 20 218 7.51e-119 337
Msa1255020 AT4G01480.1 78.000 200 43 1 29 228 18 216 2.55e-117 333
Msa1255020 AT4G01480.2 78.000 200 43 1 29 228 18 216 2.55e-117 333
Msa1255020 AT5G09650.1 31.937 191 105 6 29 197 72 259 6.16e-17 78.2

Find 65 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTTCACAAAGTGTTCT+TGG 0.212244 8_2:+53442987 None:intergenic
TTCTTGTTCATTGTTGTTAT+TGG 0.218964 8_2:+53444162 None:intergenic
TTCCTTCGTGCCCGTGCTAT+TGG 0.251156 8_2:-53442810 Msa1255020:CDS
CAAGAAAAGTGGACTTATTA+AGG 0.257685 8_2:-53443652 Msa1255020:intron
ACTTAAGGAAGTGACTTCTT+TGG 0.308159 8_2:-53441598 Msa1255020:exon
CCAAGATACTTTAGATGATA+TGG 0.313590 8_2:-53441396 Msa1255020:three_prime_UTR
AAATCATCATCAAGTGAAAA+TGG 0.320291 8_2:-53444188 Msa1255020:exon
TTATTGTAGGTGGTTGAAAT+TGG 0.337416 8_2:-53443705 Msa1255020:intron
CTTTCATTCAACGCAACAAC+TGG 0.383599 8_2:+53444085 None:intergenic
GAAGTGACTTCTTTGGATAC+TGG 0.396871 8_2:-53441591 Msa1255020:exon
CAAAAGATTTAGGCGTCAAT+TGG 0.397892 8_2:+53441461 None:intergenic
CTATATGCTGCTTATGTAGT+TGG 0.409956 8_2:-53441623 Msa1255020:CDS
TGAAATTAGAAGATTCTTTG+AGG 0.414965 8_2:-53441989 Msa1255020:CDS
CTTATGTAGTTGGAAACTTA+AGG 0.419658 8_2:-53441613 Msa1255020:CDS
TCCTTGTAATGGCGGTACTC+AGG 0.424425 8_2:+53442042 None:intergenic
CCATATCATCTAAAGTATCT+TGG 0.427749 8_2:+53441396 None:intergenic
GTTGTCTATCCACATAACTA+TGG 0.433655 8_2:-53443017 Msa1255020:CDS
ACCAGCTGAAGCTGCTGTTA+AGG 0.443366 8_2:-53441771 Msa1255020:CDS
TCGCGCTATGCTACAATGAT+TGG 0.451765 8_2:-53441490 Msa1255020:three_prime_UTR
CCATGGCATGACTTAGAGAT+TGG 0.459125 8_2:-53444019 Msa1255020:intron
GCCTTAACAGCAGCTTCAGC+TGG 0.472264 8_2:+53441770 None:intergenic
ATCCTACCCTCCTGTGGAGG+GGG 0.491826 8_2:+53441323 None:intergenic
AACAAACCGAAGAAAATGAA+TGG 0.492854 8_2:+53444311 None:intergenic
GCTCCTTGATGTCCTTGTAA+TGG 0.493887 8_2:+53442031 None:intergenic
TGAAAGAATACTTTCTTCCA+TGG 0.509143 8_2:-53444068 Msa1255020:CDS
TTAGATGATATGGTAGTGTA+TGG 0.510341 8_2:-53441386 Msa1255020:three_prime_UTR
TTGAAAACAGATGGAGCTCC+TGG 0.514131 8_2:+53443892 None:intergenic
TATGAACTCGACAAGAAAAG+TGG 0.514162 8_2:-53443663 Msa1255020:CDS
CCCTGAGTACCGCCATTACA+AGG 0.516953 8_2:-53442043 Msa1255020:CDS
TTATTACCTGCATCAGAACT+AGG 0.520797 8_2:+53442949 None:intergenic
CTTACACAATTGAAAACAGA+TGG 0.534311 8_2:+53443883 None:intergenic
AGCATCTTTCTTATCAGCCA+TGG 0.534889 8_2:+53444051 None:intergenic
TTGTGAAGATGAAGATCCCT+TGG 0.538327 8_2:-53442976 Msa1255020:CDS
GAATAGGAGCCTGTGATACC+TGG 0.543718 8_2:-53442837 Msa1255020:intron
CCTTGTAATGGCGGTACTCA+GGG 0.545314 8_2:+53442043 None:intergenic
AAGATGCTGCTGCTCATCCA+TGG 0.549543 8_2:-53444036 Msa1255020:CDS
GCTGAATAACGTAGGTTGAT+CGG 0.562129 8_2:-53443055 Msa1255020:intron
AAATCCTACCCTCCTGTGGA+GGG 0.564603 8_2:+53441321 None:intergenic
CCAATCTCTAAGTCATGCCA+TGG 0.565311 8_2:+53444019 None:intergenic
TATCATCTAAAGTATCTTGG+AGG 0.565550 8_2:+53441399 None:intergenic
CAAATCCTACCCTCCTGTGG+AGG 0.566950 8_2:+53441320 None:intergenic
GGAATAAAACCATAGTTATG+TGG 0.568906 8_2:+53443008 None:intergenic
AATCCTGTCACAGGGAGAGA+AGG 0.570938 8_2:-53442097 Msa1255020:intron
GGATGTCCTAGTTCTGATGC+AGG 0.576726 8_2:-53442955 Msa1255020:intron
TTTCAGCAAGCCTGTGTGGA+GGG 0.579237 8_2:+53442007 None:intergenic
AGGAAACAACCAGGTATCAC+AGG 0.592281 8_2:+53442828 None:intergenic
AATCCTACCCTCCTGTGGAG+GGG 0.593419 8_2:+53441322 None:intergenic
AGGCATCAATCCAATAGCAC+GGG 0.596445 8_2:+53442800 None:intergenic
CATCAGAACTAGGACATCCA+AGG 0.602800 8_2:+53442959 None:intergenic
TAGGCATCAATCCAATAGCA+CGG 0.604153 8_2:+53442799 None:intergenic
ATCCAATAGCACGGGCACGA+AGG 0.604284 8_2:+53442808 None:intergenic
CTAATTTCAGCAAGCCTGTG+TGG 0.605088 8_2:+53442003 None:intergenic
TAGGTGGTTGAAATTGGCAA+AGG 0.605186 8_2:-53443699 Msa1255020:CDS
CCGCCATTACAAGGACATCA+AGG 0.609112 8_2:-53442034 Msa1255020:CDS
TCATTCAACGCAACAACTGG+AGG 0.618816 8_2:+53444088 None:intergenic
TTACTGAGATAGTGAAGTAA+CGG 0.622170 8_2:+53444369 None:intergenic
ATTTCAGCAAGCCTGTGTGG+AGG 0.626630 8_2:+53442006 None:intergenic
CCTTGATGTCCTTGTAATGG+CGG 0.630944 8_2:+53442034 None:intergenic
GAACAAAATAGTCAATGTTG+AGG 0.634181 8_2:-53441801 Msa1255020:CDS
ATCAGAACTAGGACATCCAA+GGG 0.638473 8_2:+53442960 None:intergenic
TCAAGGAGCTCCCTCCACAC+AGG 0.645382 8_2:-53442017 Msa1255020:CDS
CGGGCACGAAGGAAACAACC+AGG 0.651968 8_2:+53442819 None:intergenic
AATCAAATCCTACCCTCCTG+TGG 0.662969 8_2:+53441317 None:intergenic
ATTGATGCCTATGATTGACC+AGG 0.665376 8_2:-53442787 Msa1255020:intron
AAACCGAAGAAAATGAATGG+AGG 0.692485 8_2:+53444314 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACAAATCAAAAGATTT+AGG + chr8_2:53444256-53444275 None:intergenic 15.0%
!!! TCAATTTTACATGTTTGTAT+AGG - chr8_2:53441482-53441501 Msa1255020:three_prime_UTR 20.0%
!!! ACCATTATTTTCATAAATTC+AGG - chr8_2:53441788-53441807 Msa1255020:CDS 20.0%
!! TCCTGAATTTATGAAAATAA+TGG + chr8_2:53441792-53441811 None:intergenic 20.0%
!! AAACTTAGACATGTAAAATA+CGG + chr8_2:53442261-53442280 None:intergenic 20.0%
!!! TTTTACATGTCTAAGTTTTT+AGG - chr8_2:53442263-53442282 Msa1255020:intron 20.0%
!! ATTGGTTATGTTTAATGTTT+AGG - chr8_2:53442292-53442311 Msa1255020:intron 20.0%
!!! TTGAAACTTGTATTTTGAAT+AGG - chr8_2:53442851-53442870 Msa1255020:intron 20.0%
!! AAAATATCAGATACAATCTA+GGG + chr8_2:53443065-53443084 None:intergenic 20.0%
!! TAAAATATCAGATACAATCT+AGG + chr8_2:53443066-53443085 None:intergenic 20.0%
!! ATAAATCATCTATGAACATA+TGG + chr8_2:53443783-53443802 None:intergenic 20.0%
!! ATGAATCATTTGATCATTAA+TGG + chr8_2:53444012-53444031 None:intergenic 20.0%
! AAATCATCATCAAGTGAAAA+TGG - chr8_2:53441516-53441535 Msa1255020:three_prime_UTR 25.0%
!! TTCTTGTTCATTGTTGTTAT+TGG + chr8_2:53441545-53441564 None:intergenic 25.0%
! ACCATTTACCACATTTATTA+AGG + chr8_2:53441922-53441941 None:intergenic 25.0%
! TAAAATTTCTGTCCCATTAA+TGG - chr8_2:53441960-53441979 Msa1255020:intron 25.0%
! ATTCACTTTACACCATTAAT+GGG + chr8_2:53441975-53441994 None:intergenic 25.0%
! AATTCACTTTACACCATTAA+TGG + chr8_2:53441976-53441995 None:intergenic 25.0%
! AAAGTGAATTCTGTTATTGT+AGG - chr8_2:53441986-53442005 Msa1255020:CDS 25.0%
! ACGATTGAAAAGCTATAATT+GGG + chr8_2:53442094-53442113 None:intergenic 25.0%
! AACGATTGAAAAGCTATAAT+TGG + chr8_2:53442095-53442114 None:intergenic 25.0%
!! TTCATCTGATTCTGAAAATA+TGG - chr8_2:53442118-53442137 Msa1255020:intron 25.0%
! CATTTGATGTGAAAATGTAA+AGG - chr8_2:53442147-53442166 Msa1255020:intron 25.0%
! ATACGTCTTCACATTTAATT+TGG + chr8_2:53442223-53442242 None:intergenic 25.0%
!!! TAAGTTTTTAGGAGTAAGAT+TGG - chr8_2:53442274-53442293 Msa1255020:intron 25.0%
!!! CTAGTTTTAAAGCTAGTTTA+TGG - chr8_2:53442789-53442808 Msa1255020:CDS 25.0%
! TAATCTTCATTTCAAATCAC+AGG + chr8_2:53443037-53443056 None:intergenic 25.0%
! GTAAGGGATTAAAATGTTAA+TGG + chr8_2:53443111-53443130 None:intergenic 25.0%
! CTCTTAAGCTAAAATTGTAA+GGG + chr8_2:53443127-53443146 None:intergenic 25.0%
! ACTCTTAAGCTAAAATTGTA+AGG + chr8_2:53443128-53443147 None:intergenic 25.0%
! TAGCTTAAGAGTAATATGAT+TGG - chr8_2:53443136-53443155 Msa1255020:intron 25.0%
! AAGAGTAATATGATTGGAAT+AGG - chr8_2:53443142-53443161 Msa1255020:intron 25.0%
! TGAAATTAGAAGATTCTTTG+AGG - chr8_2:53443715-53443734 Msa1255020:intron 25.0%
!!! CAATGGTAAAAGCATTTAAA+GGG + chr8_2:53443816-53443835 None:intergenic 25.0%
!!! TCAATGGTAAAAGCATTTAA+AGG + chr8_2:53443817-53443836 None:intergenic 25.0%
TTACTGAGATAGTGAAGTAA+CGG + chr8_2:53441338-53441357 None:intergenic 30.0%
AACAAACCGAAGAAAATGAA+TGG + chr8_2:53441396-53441415 None:intergenic 30.0%
TGAAAGAATACTTTCTTCCA+TGG - chr8_2:53441636-53441655 Msa1255020:intron 30.0%
! ATTTTCATAAATTCAGGACC+AGG - chr8_2:53441794-53441813 Msa1255020:CDS 30.0%
CTTACACAATTGAAAACAGA+TGG + chr8_2:53441824-53441843 None:intergenic 30.0%
AAACGAAGCCTTAATAAATG+TGG - chr8_2:53441911-53441930 Msa1255020:intron 30.0%
GCCTTAATAAATGTGGTAAA+TGG - chr8_2:53441918-53441937 Msa1255020:intron 30.0%
TTATTGTAGGTGGTTGAAAT+TGG - chr8_2:53441999-53442018 Msa1255020:CDS 30.0%
! CAAGAAAAGTGGACTTATTA+AGG - chr8_2:53442052-53442071 Msa1255020:CDS 30.0%
!!! TGTAAAGGCTGTTTCTTTTA+AGG - chr8_2:53442162-53442181 Msa1255020:intron 30.0%
!!! GTAAAGGCTGTTTCTTTTAA+GGG - chr8_2:53442163-53442182 Msa1255020:intron 30.0%
ATTTGGCAGAATTGTAGAAA+TGG + chr8_2:53442206-53442225 None:intergenic 30.0%
!! TTAATGTTTAGGTTGCAAAG+TGG - chr8_2:53442303-53442322 Msa1255020:intron 30.0%
TTTCACAGTTATTGAGCTAT+AGG - chr8_2:53442525-53442544 Msa1255020:intron 30.0%
AAGCATTATCTACATAAAGC+AGG + chr8_2:53442573-53442592 None:intergenic 30.0%
GCTTTATGTAGATAATGCTT+TGG - chr8_2:53442573-53442592 Msa1255020:intron 30.0%
! TCTGAAGCATAACTAACAAA+TGG - chr8_2:53442626-53442645 Msa1255020:intron 30.0%
CTGAAGCATAACTAACAAAT+GGG - chr8_2:53442627-53442646 Msa1255020:intron 30.0%
GGAATAAAACCATAGTTATG+TGG + chr8_2:53442699-53442718 None:intergenic 30.0%
AATTATACTTCAACTCTACG+TGG - chr8_2:53443007-53443026 Msa1255020:CDS 30.0%
! CCATTTTCTTTTACTCTCAT+TGG + chr8_2:53443184-53443203 None:intergenic 30.0%
CCAATGAGAGTAAAAGAAAA+TGG - chr8_2:53443181-53443200 Msa1255020:intron 30.0%
AAATTGTTGCACGCATTATT+TGG - chr8_2:53443212-53443231 Msa1255020:intron 30.0%
TTATTTGGCAATACCATTAG+AGG - chr8_2:53443227-53443246 Msa1255020:intron 30.0%
TATTTGGCAATACCATTAGA+GGG - chr8_2:53443228-53443247 Msa1255020:intron 30.0%
!! ATGCTTTGACTTTTCCAATT+TGG - chr8_2:53443511-53443530 Msa1255020:intron 30.0%
!! TGCTTTGACTTTTCCAATTT+GGG - chr8_2:53443512-53443531 Msa1255020:intron 30.0%
AGTTCTTCATTGCAAATAAC+AGG + chr8_2:53443748-53443767 None:intergenic 30.0%
!! TAAAAGCATTTAAAGGGTCA+TGG + chr8_2:53443810-53443829 None:intergenic 30.0%
AATAGCACTAACAGAATCAA+TGG + chr8_2:53443833-53443852 None:intergenic 30.0%
TAAGGACACACAACATATAT+GGG + chr8_2:53443856-53443875 None:intergenic 30.0%
TTAAGGACACACAACATATA+TGG + chr8_2:53443857-53443876 None:intergenic 30.0%
GAACAAAATAGTCAATGTTG+AGG - chr8_2:53443903-53443922 Msa1255020:intron 30.0%
ATATAGATCCCTGCAAAAAA+GGG + chr8_2:53444067-53444086 None:intergenic 30.0%
CTTATGTAGTTGGAAACTTA+AGG - chr8_2:53444091-53444110 Msa1255020:CDS 30.0%
! TATCATCTAAAGTATCTTGG+AGG + chr8_2:53444308-53444327 None:intergenic 30.0%
! CCATATCATCTAAAGTATCT+TGG + chr8_2:53444311-53444330 None:intergenic 30.0%
CCAAGATACTTTAGATGATA+TGG - chr8_2:53444308-53444327 Msa1255020:intron 30.0%
! TTAGATGATATGGTAGTGTA+TGG - chr8_2:53444318-53444337 Msa1255020:five_prime_UTR 30.0%
! CAACCTCCATTCATTTTCTT+CGG - chr8_2:53441387-53441406 Msa1255020:three_prime_UTR 35.0%
AAACCGAAGAAAATGAATGG+AGG + chr8_2:53441393-53441412 None:intergenic 35.0%
GTGAATTCTGTTATTGTAGG+TGG - chr8_2:53441989-53442008 Msa1255020:CDS 35.0%
TATGAACTCGACAAGAAAAG+TGG - chr8_2:53442041-53442060 Msa1255020:CDS 35.0%
GTTTGATCTATAGCATAGAC+TGG - chr8_2:53442325-53442344 Msa1255020:intron 35.0%
CAATTACTTTGAATGCGTTG+TGG - chr8_2:53442368-53442387 Msa1255020:intron 35.0%
AGCTATGTACTTCAGATTGT+AGG - chr8_2:53442411-53442430 Msa1255020:intron 35.0%
! GTAGATAATGCTTTGGTTTC+TGG - chr8_2:53442580-53442599 Msa1255020:intron 35.0%
GTTGTCTATCCACATAACTA+TGG - chr8_2:53442687-53442706 Msa1255020:intron 35.0%
! TCATCTTCACAAAGTGTTCT+TGG + chr8_2:53442720-53442739 None:intergenic 35.0%
TTATTACCTGCATCAGAACT+AGG + chr8_2:53442758-53442777 None:intergenic 35.0%
! ACTTTTACCTGGTCAATCAT+AGG + chr8_2:53442927-53442946 None:intergenic 35.0%
GAGTAAAAGAAAATGGTGCA+AGG - chr8_2:53443188-53443207 Msa1255020:intron 35.0%
AATACCATTAGAGGGATCAA+CGG - chr8_2:53443236-53443255 Msa1255020:intron 35.0%
AACAGCTTAAGCTTATGAGT+AGG + chr8_2:53443280-53443299 None:intergenic 35.0%
TTTGAATAATGCAACCAGCA+TGG - chr8_2:53443337-53443356 Msa1255020:intron 35.0%
! AGAATGTCTGGTTCATGATT+TGG + chr8_2:53443401-53443420 None:intergenic 35.0%
!! TAGTAAGCTTCTAGAATGTC+TGG + chr8_2:53443413-53443432 None:intergenic 35.0%
ACAGATAAAAGCGAATGCAA+TGG - chr8_2:53443487-53443506 Msa1255020:intron 35.0%
CATATTTCAAGCACCCAAAT+TGG + chr8_2:53443528-53443547 None:intergenic 35.0%
GGAAAAGTTAAAGCATGTCA+TGG + chr8_2:53443579-53443598 None:intergenic 35.0%
TTGTCTAGTGTGGAAAGTTA+AGG + chr8_2:53443874-53443893 None:intergenic 35.0%
TATAGATCCCTGCAAAAAAG+GGG + chr8_2:53444066-53444085 None:intergenic 35.0%
CATATAGATCCCTGCAAAAA+AGG + chr8_2:53444068-53444087 None:intergenic 35.0%
! CTATATGCTGCTTATGTAGT+TGG - chr8_2:53444081-53444100 Msa1255020:CDS 35.0%
ACTTAAGGAAGTGACTTCTT+TGG - chr8_2:53444106-53444125 Msa1255020:CDS 35.0%
CAAAAGATTTAGGCGTCAAT+TGG + chr8_2:53444246-53444265 None:intergenic 35.0%
CTTTCATTCAACGCAACAAC+TGG + chr8_2:53441622-53441641 None:intergenic 40.0%
AGCATCTTTCTTATCAGCCA+TGG + chr8_2:53441656-53441675 None:intergenic 40.0%
TAGGTGGTTGAAATTGGCAA+AGG - chr8_2:53442005-53442024 Msa1255020:CDS 40.0%
GTAAAATACGGTGCTTGCAA+AGG + chr8_2:53442249-53442268 None:intergenic 40.0%
TAACACGATACCAACACATG+AGG - chr8_2:53442447-53442466 Msa1255020:intron 40.0%
!! ACAAATGGGCTGAATAACGT+AGG - chr8_2:53442641-53442660 Msa1255020:intron 40.0%
!! GCTGAATAACGTAGGTTGAT+CGG - chr8_2:53442649-53442668 Msa1255020:intron 40.0%
TTGTGAAGATGAAGATCCCT+TGG - chr8_2:53442728-53442747 Msa1255020:intron 40.0%
ATCAGAACTAGGACATCCAA+GGG + chr8_2:53442747-53442766 None:intergenic 40.0%
TAGGCATCAATCCAATAGCA+CGG + chr8_2:53442908-53442927 None:intergenic 40.0%
ATTGATGCCTATGATTGACC+AGG - chr8_2:53442917-53442936 Msa1255020:intron 40.0%
! AGTGGGAAACAACTTTTACC+TGG + chr8_2:53442938-53442957 None:intergenic 40.0%
TGTGCACAAATACGCATGTA+TGG - chr8_2:53442967-53442986 Msa1255020:CDS 40.0%
ATACCATTAGAGGGATCAAC+GGG - chr8_2:53443237-53443256 Msa1255020:intron 40.0%
GACAAAAGTTTGATCCATGC+TGG + chr8_2:53443354-53443373 None:intergenic 40.0%
CTCATTCTTCTTGTCTAGTG+TGG + chr8_2:53443884-53443903 None:intergenic 40.0%
ACAAAGCATAGTAGCTCACA+TGG + chr8_2:53443971-53443990 None:intergenic 40.0%
!!! TTCTCTTTCCCCTTTTTTGC+AGG - chr8_2:53444055-53444074 Msa1255020:CDS 40.0%
!!! TCTCTTTCCCCTTTTTTGCA+GGG - chr8_2:53444056-53444075 Msa1255020:CDS 40.0%
GAAGTGACTTCTTTGGATAC+TGG - chr8_2:53444113-53444132 Msa1255020:CDS 40.0%
! TTTAAAATTTCCCCCTCCAC+AGG - chr8_2:53444371-53444390 Msa1255020:five_prime_UTR 40.0%
TCATTCAACGCAACAACTGG+AGG + chr8_2:53441619-53441638 None:intergenic 45.0%
CCAATCTCTAAGTCATGCCA+TGG + chr8_2:53441688-53441707 None:intergenic 45.0%
CCATGGCATGACTTAGAGAT+TGG - chr8_2:53441685-53441704 Msa1255020:intron 45.0%
TTGAAAACAGATGGAGCTCC+TGG + chr8_2:53441815-53441834 None:intergenic 45.0%
! GTGTTGGTATCGTGTTAGAC+TGG + chr8_2:53442444-53442463 None:intergenic 45.0%
TTGAATGCAGCCTCATGTGT+TGG + chr8_2:53442460-53442479 None:intergenic 45.0%
CATCAGAACTAGGACATCCA+AGG + chr8_2:53442748-53442767 None:intergenic 45.0%
AGGAAACAACCAGGTATCAC+AGG + chr8_2:53442879-53442898 None:intergenic 45.0%
AGGCATCAATCCAATAGCAC+GGG + chr8_2:53442907-53442926 None:intergenic 45.0%
TTTCCCGTTGATCCCTCTAA+TGG + chr8_2:53443243-53443262 None:intergenic 45.0%
TCCCTTTGAATCCTGTCACA+GGG - chr8_2:53443599-53443618 Msa1255020:intron 45.0%
TCCCTGTGACAGGATTCAAA+GGG + chr8_2:53443603-53443622 None:intergenic 45.0%
CCTTGATGTCCTTGTAATGG+CGG + chr8_2:53443673-53443692 None:intergenic 45.0%
GCTCCTTGATGTCCTTGTAA+TGG + chr8_2:53443676-53443695 None:intergenic 45.0%
CTAATTTCAGCAAGCCTGTG+TGG + chr8_2:53443704-53443723 None:intergenic 45.0%
TCGCGCTATGCTACAATGAT+TGG - chr8_2:53444214-53444233 Msa1255020:intron 45.0%
AAGATGCTGCTGCTCATCCA+TGG - chr8_2:53441668-53441687 Msa1255020:intron 50.0%
!! GGATGTCCTAGTTCTGATGC+AGG - chr8_2:53442749-53442768 Msa1255020:intron 50.0%
GAATAGGAGCCTGTGATACC+TGG - chr8_2:53442867-53442886 Msa1255020:intron 50.0%
CGTATTTGTGCACAAGCGTG+TGG + chr8_2:53442961-53442980 None:intergenic 50.0%
CTGTGACAGGATTCAAAGGG+AGG + chr8_2:53443600-53443619 None:intergenic 50.0%
CTCCCTTTGAATCCTGTCAC+AGG - chr8_2:53443598-53443617 Msa1255020:intron 50.0%
CTCCCTGTGACAGGATTCAA+AGG + chr8_2:53443604-53443623 None:intergenic 50.0%
AATCCTGTCACAGGGAGAGA+AGG - chr8_2:53443607-53443626 Msa1255020:intron 50.0%
CCTTGTAATGGCGGTACTCA+GGG + chr8_2:53443664-53443683 None:intergenic 50.0%
TCCTTGTAATGGCGGTACTC+AGG + chr8_2:53443665-53443684 None:intergenic 50.0%
CCGCCATTACAAGGACATCA+AGG - chr8_2:53443670-53443689 Msa1255020:CDS 50.0%
TTTCAGCAAGCCTGTGTGGA+GGG + chr8_2:53443700-53443719 None:intergenic 50.0%
ATTTCAGCAAGCCTGTGTGG+AGG + chr8_2:53443701-53443720 None:intergenic 50.0%
ACCAGCTGAAGCTGCTGTTA+AGG - chr8_2:53443933-53443952 Msa1255020:intron 50.0%
AAAATTTCCCCCTCCACAGG+AGG - chr8_2:53444374-53444393 Msa1255020:five_prime_UTR 50.0%
AAATTTCCCCCTCCACAGGA+GGG - chr8_2:53444375-53444394 Msa1255020:five_prime_UTR 50.0%
AAATCCTACCCTCCTGTGGA+GGG + chr8_2:53444386-53444405 None:intergenic 50.0%
TTCCTTCGTGCCCGTGCTAT+TGG - chr8_2:53442894-53442913 Msa1255020:intron 55.0%
ATCCAATAGCACGGGCACGA+AGG + chr8_2:53442899-53442918 None:intergenic 55.0%
TGTGCACAAGCGTGTGGAGT+GGG + chr8_2:53442955-53442974 None:intergenic 55.0%
TTGTGCACAAGCGTGTGGAG+TGG + chr8_2:53442956-53442975 None:intergenic 55.0%
CATCCTTCTCTCCCTGTGAC+AGG + chr8_2:53443613-53443632 None:intergenic 55.0%
! CCCTGAGTACCGCCATTACA+AGG - chr8_2:53443661-53443680 Msa1255020:CDS 55.0%
GCCTTAACAGCAGCTTCAGC+TGG + chr8_2:53443937-53443956 None:intergenic 55.0%
AATCCTACCCTCCTGTGGAG+GGG + chr8_2:53444385-53444404 None:intergenic 55.0%
CAAATCCTACCCTCCTGTGG+AGG + chr8_2:53444387-53444406 None:intergenic 55.0%
CGGGCACGAAGGAAACAACC+AGG + chr8_2:53442888-53442907 None:intergenic 60.0%
TCAAGGAGCTCCCTCCACAC+AGG - chr8_2:53443687-53443706 Msa1255020:CDS 60.0%
ATCCTACCCTCCTGTGGAGG+GGG + chr8_2:53444384-53444403 None:intergenic 60.0%
TTCCCCCTCCACAGGAGGGT+AGG - chr8_2:53444379-53444398 Msa1255020:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 53441320 53444406 53441320 ID=Msa1255020;Name=Msa1255020
chr8_2 mRNA 53441320 53444406 53441320 ID=Msa1255020-mRNA-1;Parent=Msa1255020;Name=Msa1255020-mRNA-1;_AED=0.13;_eAED=0.13;_QI=120|1|1|1|0.87|0.77|9|287|228
chr8_2 exon 53441320 53441649 53441320 ID=Msa1255020-mRNA-1:exon:16557;Parent=Msa1255020-mRNA-1
chr8_2 exon 53441755 53441836 53441755 ID=Msa1255020-mRNA-1:exon:16556;Parent=Msa1255020-mRNA-1
chr8_2 exon 53441986 53442106 53441986 ID=Msa1255020-mRNA-1:exon:16555;Parent=Msa1255020-mRNA-1
chr8_2 exon 53442788 53442853 53442788 ID=Msa1255020-mRNA-1:exon:16554;Parent=Msa1255020-mRNA-1
chr8_2 exon 53442956 53443063 53442956 ID=Msa1255020-mRNA-1:exon:16553;Parent=Msa1255020-mRNA-1
chr8_2 exon 53443653 53443718 53443653 ID=Msa1255020-mRNA-1:exon:16552;Parent=Msa1255020-mRNA-1
chr8_2 exon 53443888 53443916 53443888 ID=Msa1255020-mRNA-1:exon:16551;Parent=Msa1255020-mRNA-1
chr8_2 exon 53444020 53444222 53444020 ID=Msa1255020-mRNA-1:exon:16550;Parent=Msa1255020-mRNA-1
chr8_2 exon 53444318 53444406 53444318 ID=Msa1255020-mRNA-1:exon:16549;Parent=Msa1255020-mRNA-1
chr8_2 five_prime_UTR 53444318 53444406 53444318 ID=Msa1255020-mRNA-1:five_prime_utr;Parent=Msa1255020-mRNA-1
chr8_2 five_prime_UTR 53444192 53444222 53444192 ID=Msa1255020-mRNA-1:five_prime_utr;Parent=Msa1255020-mRNA-1
chr8_2 CDS 53444020 53444191 53444020 ID=Msa1255020-mRNA-1:cds;Parent=Msa1255020-mRNA-1
chr8_2 CDS 53443888 53443916 53443888 ID=Msa1255020-mRNA-1:cds;Parent=Msa1255020-mRNA-1
chr8_2 CDS 53443653 53443718 53443653 ID=Msa1255020-mRNA-1:cds;Parent=Msa1255020-mRNA-1
chr8_2 CDS 53442956 53443063 53442956 ID=Msa1255020-mRNA-1:cds;Parent=Msa1255020-mRNA-1
chr8_2 CDS 53442788 53442853 53442788 ID=Msa1255020-mRNA-1:cds;Parent=Msa1255020-mRNA-1
chr8_2 CDS 53441986 53442106 53441986 ID=Msa1255020-mRNA-1:cds;Parent=Msa1255020-mRNA-1
chr8_2 CDS 53441755 53441836 53441755 ID=Msa1255020-mRNA-1:cds;Parent=Msa1255020-mRNA-1
chr8_2 CDS 53441607 53441649 53441607 ID=Msa1255020-mRNA-1:cds;Parent=Msa1255020-mRNA-1
chr8_2 three_prime_UTR 53441320 53441606 53441320 ID=Msa1255020-mRNA-1:three_prime_utr;Parent=Msa1255020-mRNA-1
Gene Sequence

>Msa1255020

ATGGCTACCAATAACAACAATGAACAAGAATCAAAAAAAGCAACTCATTCTTCTTCTTCTACTGCTTCTAAGATTGAGTTACCTCCAGTTGTTGCGTTGAATGAAAGAATACTTTCTTCCATGGCTGATAAGAAAGATGCTGCTGCTCATCCATGGCATGACTTAGAGATTGGACCAGGAGCTCCATCTGTTTTCAATTGTGTGGTTGAAATTGGCAAAGGAAGCAAAGTTAAGTATGAACTCGACAAGAAAAGTGGACTTATTAAGGTTGATCGGATTCTTTACTCATCAGTTGTCTATCCACATAACTATGGTTTTATTCCAAGAACACTTTGTGAAGATGAAGATCCCTTGGATGTCCTAGTTCTGATGCAGGAGCCTGTGATACCTGGTTGTTTCCTTCGTGCCCGTGCTATTGGATTGATGCCTATGATTGACCAGGGAGAGAAGGATGACAAGATCATAGCAGTTTGTGCTGATGACCCTGAGTACCGCCATTACAAGGACATCAAGGAGCTCCCTCCACACAGGCTTGCTGAAATTAGAAGATTCTTTGAGGACTACAAGAAGAATGAGAACAAAATAGTCAATGTTGAGGACTTTCTACCAGCTGAAGCTGCTGTTAAGGCTATTGAACACTCCATGGATCTATATGCTGCTTATGTAGTTGGAAACTTAAGGAAGTGA

Protein sequence

>Msa1255020

MATNNNNEQESKKATHSSSSTASKIELPPVVALNERILSSMADKKDAAAHPWHDLEIGPGAPSVFNCVVEIGKGSKVKYELDKKSGLIKVDRILYSSVVYPHNYGFIPRTLCEDEDPLDVLVLMQEPVIPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYKDIKELPPHRLAEIRRFFEDYKKNENKIVNVEDFLPAEAAVKAIEHSMDLYAAYVVGNLRK*