Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863160 | GAU25062.1 | 86.513 | 519 | 24 | 3 | 1 | 514 | 3 | 480 | 0.0 | 902 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863160 | sp|Q94CF0|EHD1_ARATH | 74.729 | 554 | 91 | 4 | 1 | 514 | 1 | 545 | 0.0 | 836 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863160 | G7K8N7 | 86.594 | 552 | 27 | 4 | 1 | 514 | 1 | 543 | 0.0 | 949 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059950 | Msa0863160 | 0.802400 | 5.712759e-49 | -8.615850e-47 |
| Msa0095360 | Msa0863160 | 0.811200 | 7.885740e-51 | -8.615850e-47 |
| Msa0095770 | Msa0863160 | 0.805668 | 1.194331e-49 | -8.615850e-47 |
| Msa0719180 | Msa0863160 | 0.801724 | 7.866867e-49 | -8.615850e-47 |
| Msa0741440 | Msa0863160 | 0.800185 | 1.622939e-48 | -8.615850e-47 |
| Msa0786750 | Msa0863160 | 0.829752 | 4.318421e-55 | -8.615850e-47 |
| Msa0822500 | Msa0863160 | 0.820252 | 7.568533e-53 | -8.615850e-47 |
| Msa0385500 | Msa0863160 | 0.800770 | 1.233025e-48 | -8.615850e-47 |
| Msa0278570 | Msa0863160 | 0.826833 | 2.183406e-54 | -8.615850e-47 |
| Msa0863160 | Msa1432130 | 0.802628 | 5.126278e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863160 | MtrunA17_Chr5g0444771 | 86.594 | 552 | 27 | 4 | 1 | 514 | 1 | 543 | 0.0 | 949 |
| Msa0863160 | MtrunA17_Chr2g0289411 | 69.429 | 543 | 117 | 4 | 12 | 514 | 7 | 540 | 0.0 | 770 |
| Msa0863160 | MtrunA17_Chr3g0099991 | 72.973 | 518 | 85 | 4 | 1 | 513 | 4 | 471 | 0.0 | 763 |
| Msa0863160 | MtrunA17_Chr4g0075521 | 68.566 | 544 | 125 | 4 | 8 | 514 | 8 | 542 | 0.0 | 760 |
| Msa0863160 | MtrunA17_Chr3g0100041 | 78.173 | 394 | 70 | 4 | 123 | 511 | 54 | 436 | 0.0 | 624 |
| Msa0863160 | MtrunA17_Chr1g0152711 | 40.000 | 85 | 51 | 0 | 10 | 94 | 6 | 90 | 1.07e-14 | 71.6 |
| Msa0863160 | MtrunA17_Chr3g0144041 | 43.421 | 76 | 43 | 0 | 19 | 94 | 10 | 85 | 8.69e-12 | 68.2 |
| Msa0863160 | MtrunA17_Chr5g0448681 | 36.782 | 87 | 55 | 0 | 10 | 96 | 5 | 91 | 9.32e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0863160 | AT3G20290.3 | 74.729 | 554 | 91 | 4 | 1 | 514 | 1 | 545 | 0.0 | 836 |
| Msa0863160 | AT3G20290.1 | 74.729 | 554 | 91 | 4 | 1 | 514 | 1 | 545 | 0.0 | 836 |
| Msa0863160 | AT3G20290.2 | 74.729 | 554 | 91 | 4 | 1 | 514 | 1 | 545 | 0.0 | 836 |
| Msa0863160 | AT4G05520.2 | 69.470 | 547 | 120 | 4 | 6 | 514 | 7 | 544 | 0.0 | 781 |
| Msa0863160 | AT4G05520.1 | 69.343 | 548 | 120 | 4 | 6 | 514 | 7 | 545 | 0.0 | 781 |
| Msa0863160 | AT1G21630.4 | 41.489 | 94 | 50 | 1 | 5 | 98 | 4 | 92 | 1.33e-14 | 77.4 |
| Msa0863160 | AT1G21630.3 | 41.489 | 94 | 50 | 1 | 5 | 98 | 4 | 92 | 1.35e-14 | 77.4 |
| Msa0863160 | AT1G21630.2 | 41.489 | 94 | 50 | 1 | 5 | 98 | 4 | 92 | 1.39e-14 | 77.4 |
| Msa0863160 | AT1G21630.1 | 41.489 | 94 | 50 | 1 | 5 | 98 | 4 | 92 | 1.48e-14 | 77.4 |
| Msa0863160 | AT1G20760.1 | 31.818 | 110 | 72 | 1 | 19 | 125 | 11 | 120 | 4.74e-12 | 69.3 |
Find 125 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAATTTGGCAGGTGAATT+TGG | 0.152143 | 5_4:+62960720 | Msa0863160:CDS |
| CAAACCTATGGTTATGCTTT+TGG | 0.166936 | 5_4:+62958839 | Msa0863160:CDS |
| CTTCTAAAGGCTTCAACTTC+TGG | 0.183151 | 5_4:-62958622 | None:intergenic |
| TTGCAGCTGATGAGGGTTTA+TGG | 0.205072 | 5_4:+62959816 | Msa0863160:intron |
| TGACTTTGTCTCCCCATTAT+TGG | 0.230026 | 5_4:+62958661 | Msa0863160:CDS |
| TAAAATGTAGCTAGTTTCTT+TGG | 0.265116 | 5_4:+62957490 | Msa0863160:intron |
| AGTAACTTACTGACCAATAA+TGG | 0.275209 | 5_4:-62958674 | None:intergenic |
| CATTATCAGTCATCTTAAAA+AGG | 0.279779 | 5_4:+62960650 | Msa0863160:CDS |
| TGGTTCAATTACGCCGATTC+AGG | 0.280580 | 5_4:+62955952 | Msa0863160:CDS |
| CCACTGACAGCATCATTTAC+AGG | 0.290703 | 5_4:-62960117 | None:intergenic |
| GACATAAGAAATCCGCGTTT+TGG | 0.293052 | 5_4:+62955822 | Msa0863160:five_prime_UTR |
| GTGCTAATAAATTTAATCAT+AGG | 0.295416 | 5_4:-62960997 | None:intergenic |
| TTCAGCAGATCATGTGTTAT+TGG | 0.298372 | 5_4:-62957527 | None:intergenic |
| ACCTCCCATATTGGAAGGTT+TGG | 0.313155 | 5_4:+62957743 | Msa0863160:CDS |
| TTTAGTGGACTTACAACTTT+TGG | 0.313831 | 5_4:+62959327 | Msa0863160:CDS |
| GATTGTGATGGTCGCATAAC+TGG | 0.314600 | 5_4:+62956055 | Msa0863160:intron |
| CTAGTTTCTTTGGCACAATC+TGG | 0.324017 | 5_4:+62957500 | Msa0863160:CDS |
| GAAGTCACTCGTGTGTATAT+TGG | 0.325748 | 5_4:+62959879 | Msa0863160:CDS |
| GAAAGTCACCAGGAGGTAAA+TGG | 0.328789 | 5_4:-62960836 | None:intergenic |
| TCAAAGCGACAAGGTTATCT+AGG | 0.345250 | 5_4:+62957377 | Msa0863160:CDS |
| TTAAAATTCTTTAAGAGGTT+AGG | 0.355482 | 5_4:-62960969 | None:intergenic |
| TACGTCCAAACCTTCCAATA+TGG | 0.356057 | 5_4:-62957748 | None:intergenic |
| CCTGACGAGAGAAGCATTCC+TGG | 0.356472 | 5_4:+62959273 | Msa0863160:CDS |
| AAATCTGAAACCTCCCATAT+TGG | 0.361216 | 5_4:+62957734 | Msa0863160:CDS |
| TCAGCAGATCATGTGTTATT+GGG | 0.370095 | 5_4:-62957526 | None:intergenic |
| GATTCTTAAAATTCTTTAAG+AGG | 0.371540 | 5_4:-62960974 | None:intergenic |
| TGGACAGCAACTGTATTTCC+AGG | 0.377963 | 5_4:-62959291 | None:intergenic |
| AAAGTTGTAAGTCCACTAAA+TGG | 0.379160 | 5_4:-62959324 | None:intergenic |
| GTAACTTACTGACCAATAAT+GGG | 0.382996 | 5_4:-62958673 | None:intergenic |
| TCCGTGACATCAATAATTGA+TGG | 0.385375 | 5_4:+62958581 | Msa0863160:CDS |
| TCTCTGAAATGCTCAACATT+TGG | 0.386870 | 5_4:-62960858 | None:intergenic |
| AAGTCACTCGTGTGTATATT+GGG | 0.391300 | 5_4:+62959880 | Msa0863160:CDS |
| CCAGGAATGCTTCTCTCGTC+AGG | 0.394765 | 5_4:-62959273 | None:intergenic |
| GTCTCGTCAACATCTTAAAC+AGG | 0.395819 | 5_4:+62956114 | Msa0863160:CDS |
| CTTCGATCACAAGCCGCCTT+TGG | 0.399002 | 5_4:-62960204 | None:intergenic |
| TCAAACAGTTCCTTTCCAAT+TGG | 0.410121 | 5_4:-62960141 | None:intergenic |
| CACTAAATGGCATGTCTGCT+TGG | 0.410612 | 5_4:-62959311 | None:intergenic |
| TCGCGTGATATCATCCTTAC+GGG | 0.420417 | 5_4:+62959649 | Msa0863160:CDS |
| CCATCATATATTTATTTGAC+AGG | 0.424907 | 5_4:-62961086 | None:intergenic |
| AAAGGAGATGCCTGCAATGA+TGG | 0.425362 | 5_4:+62960668 | Msa0863160:CDS |
| CTTCCCGAGTGACCACATTA+AGG | 0.428825 | 5_4:-62959841 | None:intergenic |
| AAGCGGTAAGTAACTTCTAA+AGG | 0.431336 | 5_4:-62958635 | None:intergenic |
| TAAGAGGTTAGGAATGTCAT+AGG | 0.436436 | 5_4:-62960958 | None:intergenic |
| CTGCTTAAATGTAGCTATCC+AGG | 0.436539 | 5_4:+62958900 | Msa0863160:CDS |
| CTGTCAATAGGTGCACATAT+TGG | 0.436772 | 5_4:+62959025 | Msa0863160:intron |
| ACAACAAACCTATCAGTTGT+AGG | 0.438184 | 5_4:-62959055 | None:intergenic |
| CCTGTCAAATAAATATATGA+TGG | 0.440389 | 5_4:+62961086 | Msa0863160:three_prime_UTR |
| GCATAGCAATGATAAACTCT+TGG | 0.443437 | 5_4:-62957403 | None:intergenic |
| CAAGCAGACATGCCATTTAG+TGG | 0.445462 | 5_4:+62959312 | Msa0863160:CDS |
| AGTTCTATTAACGTTAAGTT+GGG | 0.446068 | 5_4:+62955684 | Msa0863160:five_prime_UTR |
| TGCTAATAAATTTAATCATA+GGG | 0.452574 | 5_4:-62960996 | None:intergenic |
| TAATTAGTGCAAGTTCGTAT+TGG | 0.452589 | 5_4:+62961119 | Msa0863160:three_prime_UTR |
| ATATACACACGAGTGACTTC+GGG | 0.454681 | 5_4:-62959876 | None:intergenic |
| CTTTGGAGCACGAACCGATT+GGG | 0.457471 | 5_4:-62955906 | None:intergenic |
| CAAAAGCATAACCATAGGTT+TGG | 0.457780 | 5_4:-62958838 | None:intergenic |
| GCTTGTGAGGATCAAACAAT+AGG | 0.458575 | 5_4:-62959604 | None:intergenic |
| AAGCATGTATCTTGGCTGCT+CGG | 0.460644 | 5_4:-62960626 | None:intergenic |
| ACGTCCAAACCTTCCAATAT+GGG | 0.460999 | 5_4:-62957747 | None:intergenic |
| AAACTAATTGATAATTTGGC+AGG | 0.463679 | 5_4:+62960711 | Msa0863160:CDS |
| TAACGTTAAGTTGGGAGAGT+TGG | 0.468205 | 5_4:+62955692 | Msa0863160:five_prime_UTR |
| ATCGCGTGATATCATCCTTA+CGG | 0.468258 | 5_4:+62959648 | Msa0863160:CDS |
| ATTACATTTGTGGACAGTCC+TGG | 0.471784 | 5_4:+62959491 | Msa0863160:CDS |
| ATCAAAACATTTATCAGCAA+TGG | 0.475501 | 5_4:+62955932 | Msa0863160:CDS |
| AATATACACACGAGTGACTT+CGG | 0.476072 | 5_4:-62959877 | None:intergenic |
| CAGTGATGAGATGATTTAGT+TGG | 0.478818 | 5_4:+62961026 | Msa0863160:three_prime_UTR |
| AGAGTTTATCATTGCTATGC+AGG | 0.481694 | 5_4:+62957406 | Msa0863160:CDS |
| GAGTTCTATTAACGTTAAGT+TGG | 0.481816 | 5_4:+62955683 | Msa0863160:five_prime_UTR |
| GATGCTGTCAGTGGTCCAAT+TGG | 0.486711 | 5_4:+62960126 | Msa0863160:CDS |
| GACCTGAGCCTACAACTGAT+AGG | 0.492937 | 5_4:+62959047 | Msa0863160:CDS |
| ACTGGAGCACATTACATTTG+TGG | 0.493955 | 5_4:+62959481 | Msa0863160:CDS |
| GAGCACGAACCGATTGGGAT+CGG | 0.494221 | 5_4:-62955901 | None:intergenic |
| TAAATTTAAAGTTTGTGAAG+TGG | 0.498032 | 5_4:+62955774 | Msa0863160:five_prime_UTR |
| GAGTTCGATCCGATCCCAAT+CGG | 0.498703 | 5_4:+62955892 | Msa0863160:CDS |
| GTGGAAGAAATAACCTGAAT+CGG | 0.500525 | 5_4:-62955965 | None:intergenic |
| TAGTTTCTTTGGCACAATCT+GGG | 0.500930 | 5_4:+62957501 | Msa0863160:CDS |
| AACCTATCAGTTGTAGGCTC+AGG | 0.507096 | 5_4:-62959049 | None:intergenic |
| TATTACAGAAGAATGAGCTC+GGG | 0.510194 | 5_4:-62961159 | None:intergenic |
| AACAGAGAGTATTGTATCAA+TGG | 0.510672 | 5_4:+62955870 | Msa0863160:exon |
| CATTTCAGAGAGAGCTTGAG+TGG | 0.511652 | 5_4:+62960870 | Msa0863160:CDS |
| GGCATGATTAAAAGCAAAGC+TGG | 0.513844 | 5_4:+62955713 | Msa0863160:five_prime_UTR |
| CAACTAAATCATCTCATCAC+TGG | 0.514319 | 5_4:-62961025 | None:intergenic |
| AAGGAGATGCCTGCAATGAT+GGG | 0.518507 | 5_4:+62960669 | Msa0863160:CDS |
| GATAATGTAAGCATGTATCT+TGG | 0.519127 | 5_4:-62960634 | None:intergenic |
| CCCGATGTTGCAGCTGATGA+GGG | 0.519609 | 5_4:+62959809 | Msa0863160:intron |
| AGAAAGCAGAATTACTTGCC+TGG | 0.524373 | 5_4:-62958918 | None:intergenic |
| AGGGAGTTCCATTTACCTCC+TGG | 0.527048 | 5_4:+62960828 | Msa0863160:CDS |
| AGCATGTATCTTGGCTGCTC+GGG | 0.529896 | 5_4:-62960625 | None:intergenic |
| TATCTTTAAGATCTGAAAGA+AGG | 0.531910 | 5_4:-62960179 | None:intergenic |
| AAATTCAAAACAGGTACAAA+GGG | 0.532909 | 5_4:+62960809 | Msa0863160:intron |
| TGATAGGTTTGTTGTTGTCA+TGG | 0.540376 | 5_4:+62959063 | Msa0863160:CDS |
| CTGAAACCTCCCATATTGGA+AGG | 0.543174 | 5_4:+62957738 | Msa0863160:CDS |
| TTGTAGCATGCTAATATCAA+AGG | 0.543187 | 5_4:+62961057 | Msa0863160:three_prime_UTR |
| GCCCGATGTTGCAGCTGATG+AGG | 0.545566 | 5_4:+62959808 | Msa0863160:intron |
| GCCATCAATTATTGATGTCA+CGG | 0.551244 | 5_4:-62958582 | None:intergenic |
| TCTTTGGAGCACGAACCGAT+TGG | 0.552076 | 5_4:-62955907 | None:intergenic |
| TTTGGCAGGTGAATTTGGAA+AGG | 0.553683 | 5_4:+62960725 | Msa0863160:CDS |
| CTGTCAAATAAATATATGAT+GGG | 0.556615 | 5_4:+62961087 | Msa0863160:three_prime_UTR |
| GGAGCCTTAATGTGGTCACT+CGG | 0.556776 | 5_4:+62959837 | Msa0863160:CDS |
| CTAGGGCAACTTACAGGATG+AGG | 0.558542 | 5_4:-62959387 | None:intergenic |
| CTATTACAGAAGAATGAGCT+CGG | 0.559551 | 5_4:-62961160 | None:intergenic |
| TTTGTCATCATGTCCCCGTA+AGG | 0.562314 | 5_4:-62959663 | None:intergenic |
| AAAATTCAAAACAGGTACAA+AGG | 0.562439 | 5_4:+62960808 | Msa0863160:intron |
| ATTGATGTCACGGAGGAAAG+TGG | 0.569090 | 5_4:-62958572 | None:intergenic |
| CTTAATGTGGTCACTCGGGA+AGG | 0.569960 | 5_4:+62959842 | Msa0863160:CDS |
| GAGCCTTAATGTGGTCACTC+GGG | 0.589840 | 5_4:+62959838 | Msa0863160:CDS |
| TGACCCAAAAGCATAACCAT+AGG | 0.591304 | 5_4:-62958843 | None:intergenic |
| GGGTTTATGGAGCCTTAATG+TGG | 0.616040 | 5_4:+62959829 | Msa0863160:CDS |
| TCAACATTTGGAAAGTCACC+AGG | 0.621326 | 5_4:-62960846 | None:intergenic |
| TCTTAAAGATATACCAAAGG+CGG | 0.626329 | 5_4:+62960191 | Msa0863160:CDS |
| TCGCTAATATCAAGCTTGTG+AGG | 0.629850 | 5_4:-62959617 | None:intergenic |
| TGTCAGTGGTCCAATTGGAA+AGG | 0.632617 | 5_4:+62960131 | Msa0863160:CDS |
| TCCAAACCTTCCAATATGGG+AGG | 0.634452 | 5_4:-62957744 | None:intergenic |
| AGATCTTAAAGATATACCAA+AGG | 0.648218 | 5_4:+62960188 | Msa0863160:CDS |
| ACATGATGACAAAATTCGAG+TGG | 0.655436 | 5_4:+62959673 | Msa0863160:CDS |
| CATGATCTGCTGAATAGTGA+TGG | 0.656942 | 5_4:+62957536 | Msa0863160:CDS |
| TTCACGCTTCTTCCAAAACG+CGG | 0.658352 | 5_4:-62955834 | None:intergenic |
| ATTGCAGATTCAAAGCGACA+AGG | 0.684261 | 5_4:+62957368 | Msa0863160:CDS |
| TAACTTACTGACCAATAATG+GGG | 0.687423 | 5_4:-62958672 | None:intergenic |
| TTGACGAGACAAATTAGACA+TGG | 0.690123 | 5_4:-62956101 | None:intergenic |
| GGGAGACAAAGTCATTAAAG+CGG | 0.691811 | 5_4:-62958652 | None:intergenic |
| ATTACAGAAGAATGAGCTCG+GGG | 0.696099 | 5_4:-62961158 | None:intergenic |
| CGCGTGATATCATCCTTACG+GGG | 0.701287 | 5_4:+62959650 | Msa0863160:CDS |
| CCTGTAAATGATGCTGTCAG+TGG | 0.715225 | 5_4:+62960117 | Msa0863160:CDS |
| ATCAATTATTGATGTCACGG+AGG | 0.720432 | 5_4:-62958579 | None:intergenic |
| ACATTTGGAAAGTCACCAGG+AGG | 0.745590 | 5_4:-62960843 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTTACTATATATATAA+TGG | - | chr5_4:62956395-62956414 | None:intergenic | 10.0% |
| !!! | ATATATAGTAACATTTTTTA+TGG | + | chr5_4:62956399-62956418 | Msa0863160:intron | 10.0% |
| !!! | AATAATTTTAGAGATATTTT+AGG | - | chr5_4:62956517-62956536 | None:intergenic | 10.0% |
| !! | CAAATATTATCATAAAATAA+AGG | - | chr5_4:62957121-62957140 | None:intergenic | 10.0% |
| !!! | CTTTATTTTATGATAATATT+TGG | + | chr5_4:62957119-62957138 | Msa0863160:intron | 10.0% |
| !!! | ATAAATTTTTGTAATTGTAT+TGG | + | chr5_4:62957602-62957621 | Msa0863160:intron | 10.0% |
| !!! | TTTAGAAATAATTAATTTTG+TGG | + | chr5_4:62960431-62960450 | Msa0863160:intron | 10.0% |
| !!! | TTTTACTTTATTTTTAGTTT+TGG | - | chr5_4:62961263-62961282 | None:intergenic | 10.0% |
| !! | AATTAAAAAGAAGGAAAAAT+TGG | - | chr5_4:62955990-62956009 | None:intergenic | 15.0% |
| !! | TAGGAAAAAAGATATTAAAT+TGG | + | chr5_4:62956196-62956215 | Msa0863160:intron | 15.0% |
| !! | ATTAAAGAGGAATTTAATAT+AGG | - | chr5_4:62956733-62956752 | None:intergenic | 15.0% |
| !!! | TTGAAATAAATAAAAAGTGT+AGG | - | chr5_4:62957176-62957195 | None:intergenic | 15.0% |
| !! | TTTCAATTATTAAGAGTAAA+AGG | + | chr5_4:62958168-62958187 | Msa0863160:intron | 15.0% |
| !!! | ACTACTAATTGTTTTTATAA+TGG | + | chr5_4:62959751-62959770 | Msa0863160:intron | 15.0% |
| !!! | CTACTAATTGTTTTTATAAT+GGG | + | chr5_4:62959752-62959771 | Msa0863160:intron | 15.0% |
| !! | ATAAATCAAATCAAATCAAA+AGG | - | chr5_4:62960392-62960411 | None:intergenic | 15.0% |
| !!! | TTTGATTTGATTTATTCTTT+TGG | + | chr5_4:62960397-62960416 | Msa0863160:intron | 15.0% |
| !!! | TTGATTTGATTTATTCTTTT+GGG | + | chr5_4:62960398-62960417 | Msa0863160:intron | 15.0% |
| !! | TGCTAATAAATTTAATCATA+GGG | - | chr5_4:62960999-62961018 | None:intergenic | 15.0% |
| !!! | TAAATTTAAAGTTTGTGAAG+TGG | + | chr5_4:62955774-62955793 | Msa0863160:five_prime_UTR | 20.0% |
| !!! | ATAAATGTTTTGATGATCTT+TGG | - | chr5_4:62955926-62955945 | None:intergenic | 20.0% |
| !!! | ATGGATTTAATTTGTATACA+CGG | + | chr5_4:62956418-62956437 | Msa0863160:intron | 20.0% |
| !! | TTTATTTGACGTAATTTGAT+TGG | + | chr5_4:62956535-62956554 | Msa0863160:intron | 20.0% |
| !! | TAAATCTAAAAGGCAAAAAA+AGG | - | chr5_4:62957041-62957060 | None:intergenic | 20.0% |
| !!! | AGGTAAAGTTTAAAACAATA+TGG | - | chr5_4:62957101-62957120 | None:intergenic | 20.0% |
| !!! | ATTTTAAATGAGTAAGATTC+TGG | - | chr5_4:62957476-62957495 | None:intergenic | 20.0% |
| !! | AAATATTAAAATGCACTTGT+AGG | + | chr5_4:62957627-62957646 | Msa0863160:intron | 20.0% |
| !!! | TTTGTTTATGCTTTTTTTTC+TGG | - | chr5_4:62957873-62957892 | None:intergenic | 20.0% |
| !! | TATCAAATATAGTTTCTGAT+AGG | + | chr5_4:62958440-62958459 | Msa0863160:intron | 20.0% |
| !! | ATCAAATATAGTTTCTGATA+GGG | + | chr5_4:62958441-62958460 | Msa0863160:intron | 20.0% |
| !!! | TAGTTTTCATTTTTTATCCA+TGG | + | chr5_4:62959142-62959161 | Msa0863160:intron | 20.0% |
| !!! | TGATTTGATTTATTCTTTTG+GGG | + | chr5_4:62960399-62960418 | Msa0863160:intron | 20.0% |
| !!! | GCAAAAACTAATTGATAATT+TGG | + | chr5_4:62960707-62960726 | Msa0863160:CDS | 20.0% |
| !!! | TTAAAATTCTTTAAGAGGTT+AGG | - | chr5_4:62960972-62960991 | None:intergenic | 20.0% |
| !! | GATTCTTAAAATTCTTTAAG+AGG | - | chr5_4:62960977-62960996 | None:intergenic | 20.0% |
| !! | GTGCTAATAAATTTAATCAT+AGG | - | chr5_4:62961000-62961019 | None:intergenic | 20.0% |
| !! | CTGTCAAATAAATATATGAT+GGG | + | chr5_4:62961087-62961106 | Msa0863160:three_prime_UTR | 20.0% |
| ! | AGTTCTATTAACGTTAAGTT+GGG | + | chr5_4:62955684-62955703 | Msa0863160:five_prime_UTR | 25.0% |
| ! | ATCAAAACATTTATCAGCAA+TGG | + | chr5_4:62955932-62955951 | Msa0863160:CDS | 25.0% |
| ! | TAAAAAGAAGGAAAAATTGG+TGG | - | chr5_4:62955987-62956006 | None:intergenic | 25.0% |
| ! | AGAGGAATTTAATATAGGAA+GGG | - | chr5_4:62956728-62956747 | None:intergenic | 25.0% |
| ! | AAGAGGAATTTAATATAGGA+AGG | - | chr5_4:62956729-62956748 | None:intergenic | 25.0% |
| ! | TTGTACTAAATAGTGTATCA+AGG | - | chr5_4:62956895-62956914 | None:intergenic | 25.0% |
| ! | AAAAAGGTCAAAACAAAAAG+AGG | - | chr5_4:62957025-62957044 | None:intergenic | 25.0% |
| !! | AAGAAATAATTTAGTTCACG+AGG | - | chr5_4:62957317-62957336 | None:intergenic | 25.0% |
| ! | TAAAAATATGTTACGCTTTG+TGG | + | chr5_4:62957429-62957448 | Msa0863160:intron | 25.0% |
| !! | TAAAATGTAGCTAGTTTCTT+TGG | + | chr5_4:62957490-62957509 | Msa0863160:intron | 25.0% |
| ! | ATATATTACCATTTACATCC+AGG | - | chr5_4:62957900-62957919 | None:intergenic | 25.0% |
| ! | AACTGGAATTTCAAATAACA+AGG | - | chr5_4:62957960-62957979 | None:intergenic | 25.0% |
| ! | ATTATTAAGAGTAAAAGGCT+TGG | + | chr5_4:62958173-62958192 | Msa0863160:intron | 25.0% |
| ! | AGATAATAAAAACTCGAAAC+TGG | - | chr5_4:62958398-62958417 | None:intergenic | 25.0% |
| !!! | GTTTCGAGTTTTTATTATCT+AGG | + | chr5_4:62958398-62958417 | Msa0863160:intron | 25.0% |
| ! | TTGATAGATACAAGACAAAA+TGG | - | chr5_4:62958426-62958445 | None:intergenic | 25.0% |
| !! | TTACTATCTTTAGAAATCAC+TGG | + | chr5_4:62958692-62958711 | Msa0863160:intron | 25.0% |
| ! | GTATTCAAATAACTGTCAAT+AGG | + | chr5_4:62959013-62959032 | Msa0863160:intron | 25.0% |
| ! | TGAAAACTAAGAAAATCTTC+AGG | - | chr5_4:62959131-62959150 | None:intergenic | 25.0% |
| !!! | CTTATTGCATTAGTTTTAAC+TGG | + | chr5_4:62959224-62959243 | Msa0863160:intron | 25.0% |
| ! | AAATTGATACGCTTATTCAA+TGG | - | chr5_4:62959415-62959434 | None:intergenic | 25.0% |
| ! | TTAAAATGTTCTCTTTGACA+TGG | + | chr5_4:62959937-62959956 | Msa0863160:intron | 25.0% |
| !!! | TTGCATCAATGTTATTTTTG+TGG | + | chr5_4:62960035-62960054 | Msa0863160:intron | 25.0% |
| !!! | TATCTTTAAGATCTGAAAGA+AGG | - | chr5_4:62960182-62960201 | None:intergenic | 25.0% |
| ! | AGATCTTAAAGATATACCAA+AGG | + | chr5_4:62960188-62960207 | Msa0863160:CDS | 25.0% |
| !! | ATTAATTTTGTGGATCTTCT+TGG | + | chr5_4:62960441-62960460 | Msa0863160:intron | 25.0% |
| !! | TTAATTTTGTGGATCTTCTT+GGG | + | chr5_4:62960442-62960461 | Msa0863160:intron | 25.0% |
| ! | ACATACAAACAGTATTTAAC+TGG | - | chr5_4:62960519-62960538 | None:intergenic | 25.0% |
| ! | CATTATCAGTCATCTTAAAA+AGG | + | chr5_4:62960650-62960669 | Msa0863160:CDS | 25.0% |
| !! | AAACTAATTGATAATTTGGC+AGG | + | chr5_4:62960711-62960730 | Msa0863160:CDS | 25.0% |
| ! | AAAATTCAAAACAGGTACAA+AGG | + | chr5_4:62960808-62960827 | Msa0863160:intron | 25.0% |
| ! | AAATTCAAAACAGGTACAAA+GGG | + | chr5_4:62960809-62960828 | Msa0863160:intron | 25.0% |
| !! | TCAACTACTTGTAACATTTT+CGG | - | chr5_4:62960927-62960946 | None:intergenic | 25.0% |
| ! | CCATCATATATTTATTTGAC+AGG | - | chr5_4:62961089-62961108 | None:intergenic | 25.0% |
| ! | CCTGTCAAATAAATATATGA+TGG | + | chr5_4:62961086-62961105 | Msa0863160:three_prime_UTR | 25.0% |
| GAGTTCTATTAACGTTAAGT+TGG | + | chr5_4:62955683-62955702 | Msa0863160:five_prime_UTR | 30.0% | |
| !! | AACAGAGAGTATTGTATCAA+TGG | + | chr5_4:62955870-62955889 | Msa0863160:exon | 30.0% |
| !! | CTTTGATTTTCAGATTGTGA+TGG | + | chr5_4:62956043-62956062 | Msa0863160:intron | 30.0% |
| AATATGATCGATTGCTTGTT+TGG | + | chr5_4:62956168-62956187 | Msa0863160:intron | 30.0% | |
| !! | AATTGGAGTTGATCAGTTTT+AGG | + | chr5_4:62956213-62956232 | Msa0863160:intron | 30.0% |
| !! | TTTTAGGAACTAACCTAAAG+AGG | - | chr5_4:62956501-62956520 | None:intergenic | 30.0% |
| GTAAAAAATCTTTACACCGT+CGG | + | chr5_4:62956566-62956585 | Msa0863160:intron | 30.0% | |
| TTGGCAAAGTGAAATTAAAG+AGG | - | chr5_4:62956746-62956765 | None:intergenic | 30.0% | |
| CTTTGCCAAATCAAATATAG+TGG | + | chr5_4:62956757-62956776 | Msa0863160:intron | 30.0% | |
| AGCAACCACTATATTTGATT+TGG | - | chr5_4:62956765-62956784 | None:intergenic | 30.0% | |
| !! | TGGGTTTGAACTTTTATTTG+TGG | + | chr5_4:62956792-62956811 | Msa0863160:intron | 30.0% |
| TTGTGAAATAGAAGCTATAG+CGG | + | chr5_4:62956918-62956937 | Msa0863160:intron | 30.0% | |
| !! | CCTTTTAGATTTAAAGCAGT+CGG | + | chr5_4:62957048-62957067 | Msa0863160:intron | 30.0% |
| ! | TTTTTCTCCATCAATTGGAA+TGG | + | chr5_4:62957214-62957233 | Msa0863160:intron | 30.0% |
| ATGGTAAGTTATGTGTGTTT+AGG | + | chr5_4:62957555-62957574 | Msa0863160:intron | 30.0% | |
| !! | TCCCATTTTAGTGAATGTAT+TGG | + | chr5_4:62957921-62957940 | Msa0863160:intron | 30.0% |
| CCCAATACATTCACTAAAAT+GGG | - | chr5_4:62957925-62957944 | None:intergenic | 30.0% | |
| !! | CCCATTTTAGTGAATGTATT+GGG | + | chr5_4:62957922-62957941 | Msa0863160:intron | 30.0% |
| ACCCAATACATTCACTAAAA+TGG | - | chr5_4:62957926-62957945 | None:intergenic | 30.0% | |
| GGAATTTCAAATAACAAGGA+AGG | - | chr5_4:62957956-62957975 | None:intergenic | 30.0% | |
| ATTATCGCTAATTACTGAAC+TGG | - | chr5_4:62957977-62957996 | None:intergenic | 30.0% | |
| TGTCTGAATAGGATGTTATT+AGG | + | chr5_4:62958283-62958302 | Msa0863160:intron | 30.0% | |
| GTCTGAATAGGATGTTATTA+GGG | + | chr5_4:62958284-62958303 | Msa0863160:intron | 30.0% | |
| TCTGAATAGGATGTTATTAG+GGG | + | chr5_4:62958285-62958304 | Msa0863160:intron | 30.0% | |
| TGATAGGGCATAAATCAATT+TGG | + | chr5_4:62958456-62958475 | Msa0863160:intron | 30.0% | |
| TAACTTACTGACCAATAATG+GGG | - | chr5_4:62958675-62958694 | None:intergenic | 30.0% | |
| GTAACTTACTGACCAATAAT+GGG | - | chr5_4:62958676-62958695 | None:intergenic | 30.0% | |
| AGTAACTTACTGACCAATAA+TGG | - | chr5_4:62958677-62958696 | None:intergenic | 30.0% | |
| ! | AAACCTATGGTTATGCTTTT+GGG | + | chr5_4:62958840-62958859 | Msa0863160:CDS | 30.0% |
| !!! | CATTAGTTTTAACTGGCAAA+TGG | + | chr5_4:62959231-62959250 | Msa0863160:intron | 30.0% |
| AAAGTTGTAAGTCCACTAAA+TGG | - | chr5_4:62959327-62959346 | None:intergenic | 30.0% | |
| !!! | TTTAGTGGACTTACAACTTT+TGG | + | chr5_4:62959327-62959346 | Msa0863160:CDS | 30.0% |
| ! | CAATTTTCCTTGTGAGTATT+TGG | + | chr5_4:62959429-62959448 | Msa0863160:intron | 30.0% |
| AGCTTTCGACAATAAAAAAC+AGG | - | chr5_4:62959461-62959480 | None:intergenic | 30.0% | |
| ! | TTTTTATTGTCGAAAGCTAC+TGG | + | chr5_4:62959463-62959482 | Msa0863160:intron | 30.0% |
| ! | TCAACGAGCATATGATTTTA+CGG | + | chr5_4:62959541-62959560 | Msa0863160:CDS | 30.0% |
| TAACATTGATGCAAAACTTC+AGG | - | chr5_4:62960029-62960048 | None:intergenic | 30.0% | |
| !!! | CATCAATGTTATTTTTGTGG+TGG | + | chr5_4:62960038-62960057 | Msa0863160:intron | 30.0% |
| TCTTAAAGATATACCAAAGG+CGG | + | chr5_4:62960191-62960210 | Msa0863160:CDS | 30.0% | |
| ! | ATGTTATTTACTGAAGTTGC+TGG | + | chr5_4:62960535-62960554 | Msa0863160:intron | 30.0% |
| GATAATGTAAGCATGTATCT+TGG | - | chr5_4:62960637-62960656 | None:intergenic | 30.0% | |
| TGACCTGTAAAATTCAAAAC+AGG | + | chr5_4:62960800-62960819 | Msa0863160:intron | 30.0% | |
| !! | GTACCTGTTTTGAATTTTAC+AGG | - | chr5_4:62960806-62960825 | None:intergenic | 30.0% |
| TTGTAGCATGCTAATATCAA+AGG | + | chr5_4:62961057-62961076 | Msa0863160:three_prime_UTR | 30.0% | |
| TAATTAGTGCAAGTTCGTAT+TGG | + | chr5_4:62961119-62961138 | Msa0863160:three_prime_UTR | 30.0% | |
| GTGGAAGAAATAACCTGAAT+CGG | - | chr5_4:62955968-62955987 | None:intergenic | 35.0% | |
| ATTAGACATGGCGAAAAACT+TGG | - | chr5_4:62956092-62956111 | None:intergenic | 35.0% | |
| TTGACGAGACAAATTAGACA+TGG | - | chr5_4:62956104-62956123 | None:intergenic | 35.0% | |
| CATTGGATGCAAGTGTAAAA+TGG | - | chr5_4:62956303-62956322 | None:intergenic | 35.0% | |
| GCATCATGAAGTGATTTGAT+TGG | - | chr5_4:62956476-62956495 | None:intergenic | 35.0% | |
| TCCTAATATATATGCACCGA+CGG | - | chr5_4:62956585-62956604 | None:intergenic | 35.0% | |
| CAATGCATACTTTACAGCAT+AGG | - | chr5_4:62956678-62956697 | None:intergenic | 35.0% | |
| CTATGCTGTAAAGTATGCAT+TGG | + | chr5_4:62956676-62956695 | Msa0863160:intron | 35.0% | |
| ATTTAATATAGGAAGGGCAG+TGG | - | chr5_4:62956722-62956741 | None:intergenic | 35.0% | |
| TATAGTGGTTGCTCTTGAAT+TGG | + | chr5_4:62956772-62956791 | Msa0863160:intron | 35.0% | |
| ATAGTGGTTGCTCTTGAATT+GGG | + | chr5_4:62956773-62956792 | Msa0863160:intron | 35.0% | |
| ! | TCCGCATTGTTGTTATATAG+TGG | + | chr5_4:62956833-62956852 | Msa0863160:intron | 35.0% |
| GCCACTATATAACAACAATG+CGG | - | chr5_4:62956837-62956856 | None:intergenic | 35.0% | |
| ! | ACAACAGTTGGTTCAAATTC+CGG | - | chr5_4:62956963-62956982 | None:intergenic | 35.0% |
| ! | CCGACTGCTTTAAATCTAAA+AGG | - | chr5_4:62957051-62957070 | None:intergenic | 35.0% |
| ! | TGACGTTTTTCTCCATCAAT+TGG | + | chr5_4:62957209-62957228 | Msa0863160:intron | 35.0% |
| GTCAATACCATTCCAATTGA+TGG | - | chr5_4:62957224-62957243 | None:intergenic | 35.0% | |
| !! | ATTGGAATGGTATTGACATG+TGG | + | chr5_4:62957227-62957246 | Msa0863160:intron | 35.0% |
| CTTTGCTCCTTACCAAAATA+AGG | + | chr5_4:62957337-62957356 | Msa0863160:intron | 35.0% | |
| TCCTTACCAAAATAAGGTGT+GGG | + | chr5_4:62957343-62957362 | Msa0863160:intron | 35.0% | |
| GCATAGCAATGATAAACTCT+TGG | - | chr5_4:62957406-62957425 | None:intergenic | 35.0% | |
| AGAGTTTATCATTGCTATGC+AGG | + | chr5_4:62957406-62957425 | Msa0863160:CDS | 35.0% | |
| TTGTGGAAGTTTAATGCTGA+TGG | + | chr5_4:62957446-62957465 | Msa0863160:intron | 35.0% | |
| TAGTTTCTTTGGCACAATCT+GGG | + | chr5_4:62957501-62957520 | Msa0863160:CDS | 35.0% | |
| ! | TCAGCAGATCATGTGTTATT+GGG | - | chr5_4:62957529-62957548 | None:intergenic | 35.0% |
| TTCAGCAGATCATGTGTTAT+TGG | - | chr5_4:62957530-62957549 | None:intergenic | 35.0% | |
| ! | AAATCTGAAACCTCCCATAT+TGG | + | chr5_4:62957734-62957753 | Msa0863160:CDS | 35.0% |
| TCAGTAATTAGCGATAATGC+AGG | + | chr5_4:62957979-62957998 | Msa0863160:intron | 35.0% | |
| !! | AACCAACTACTTGATAGTGA+TGG | - | chr5_4:62958021-62958040 | None:intergenic | 35.0% |
| ATTCAGTATGTTCTCTCTAG+CGG | - | chr5_4:62958135-62958154 | None:intergenic | 35.0% | |
| TTTGCATTCTTTACCAGCTT+AGG | + | chr5_4:62958196-62958215 | Msa0863160:intron | 35.0% | |
| CTGAATAGGATGTTATTAGG+GGG | + | chr5_4:62958286-62958305 | Msa0863160:intron | 35.0% | |
| AAATCTACAGGATGGTCTTT+AGG | - | chr5_4:62958488-62958507 | None:intergenic | 35.0% | |
| TAGAGAACAAATCTACAGGA+TGG | - | chr5_4:62958496-62958515 | None:intergenic | 35.0% | |
| !! | GTTCTAGAGAACAAATCTAC+AGG | - | chr5_4:62958500-62958519 | None:intergenic | 35.0% |
| TGAAGTAGCACACAGATTAA+AGG | - | chr5_4:62958522-62958541 | None:intergenic | 35.0% | |
| !!! | GTGCTACTTCACTTGTATTT+TGG | + | chr5_4:62958531-62958550 | Msa0863160:intron | 35.0% |
| !! | ATTTTGGTGCATATTTCCTC+AGG | + | chr5_4:62958547-62958566 | Msa0863160:intron | 35.0% |
| ATCAATTATTGATGTCACGG+AGG | - | chr5_4:62958582-62958601 | None:intergenic | 35.0% | |
| TCCGTGACATCAATAATTGA+TGG | + | chr5_4:62958581-62958600 | Msa0863160:CDS | 35.0% | |
| GCCATCAATTATTGATGTCA+CGG | - | chr5_4:62958585-62958604 | None:intergenic | 35.0% | |
| AAGCGGTAAGTAACTTCTAA+AGG | - | chr5_4:62958638-62958657 | None:intergenic | 35.0% | |
| TAGTGTCACATTTCTTTCCT+TGG | + | chr5_4:62958727-62958746 | Msa0863160:intron | 35.0% | |
| ACATATCAACGATGTATCCA+AGG | - | chr5_4:62958747-62958766 | None:intergenic | 35.0% | |
| !! | TGATTTTGATGCCAAACCTA+TGG | + | chr5_4:62958827-62958846 | Msa0863160:CDS | 35.0% |
| ! | CAAAAGCATAACCATAGGTT+TGG | - | chr5_4:62958841-62958860 | None:intergenic | 35.0% |
| ! | CAAACCTATGGTTATGCTTT+TGG | + | chr5_4:62958839-62958858 | Msa0863160:CDS | 35.0% |
| TGTCTACAAAACAGATAGAG+AGG | - | chr5_4:62958972-62958991 | None:intergenic | 35.0% | |
| ACAACAAACCTATCAGTTGT+AGG | - | chr5_4:62959058-62959077 | None:intergenic | 35.0% | |
| !! | TGATAGGTTTGTTGTTGTCA+TGG | + | chr5_4:62959063-62959082 | Msa0863160:CDS | 35.0% |
| !! | TTCAGGTATAAGAGTGCTTT+GGG | - | chr5_4:62959114-62959133 | None:intergenic | 35.0% |
| ATTGTCAAAACTAAGCACCA+TGG | - | chr5_4:62959162-62959181 | None:intergenic | 35.0% | |
| !! | TTTTAACTGGCAAATGGTGT+TGG | + | chr5_4:62959237-62959256 | Msa0863160:intron | 35.0% |
| GTTATGTCCAAATACTCACA+AGG | - | chr5_4:62959439-62959458 | None:intergenic | 35.0% | |
| ! | TTTTCACCAGATAAAACTCC+AGG | - | chr5_4:62959512-62959531 | None:intergenic | 35.0% |
| ! | CAACGAGCATATGATTTTAC+GGG | + | chr5_4:62959542-62959561 | Msa0863160:CDS | 35.0% |
| ! | ATTTTACGGGTGTAACATCA+TGG | + | chr5_4:62959555-62959574 | Msa0863160:CDS | 35.0% |
| ACATGATGACAAAATTCGAG+TGG | + | chr5_4:62959673-62959692 | Msa0863160:CDS | 35.0% | |
| !!! | AATTCGAGTGGTTTTGAACA+AGG | + | chr5_4:62959685-62959704 | Msa0863160:CDS | 35.0% |
| !! | TATAATGGGTGTTCATGAGT+AGG | + | chr5_4:62959766-62959785 | Msa0863160:intron | 35.0% |
| !! | ATAATGGGTGTTCATGAGTA+GGG | + | chr5_4:62959767-62959786 | Msa0863160:intron | 35.0% |
| AATATACACACGAGTGACTT+CGG | - | chr5_4:62959880-62959899 | None:intergenic | 35.0% | |
| AAGTCACTCGTGTGTATATT+GGG | + | chr5_4:62959880-62959899 | Msa0863160:CDS | 35.0% | |
| !!! | TTATTTTTGTGGTGGAATCG+TGG | + | chr5_4:62960046-62960065 | Msa0863160:intron | 35.0% |
| TCAAACAGTTCCTTTCCAAT+TGG | - | chr5_4:62960144-62960163 | None:intergenic | 35.0% | |
| GGAACTGTTTGAAAAAGAAC+AGG | + | chr5_4:62960152-62960171 | Msa0863160:CDS | 35.0% | |
| GATAATTTGGCAGGTGAATT+TGG | + | chr5_4:62960720-62960739 | Msa0863160:CDS | 35.0% | |
| !! | TCTCTGAAATGCTCAACATT+TGG | - | chr5_4:62960861-62960880 | None:intergenic | 35.0% |
| TAAGAGGTTAGGAATGTCAT+AGG | - | chr5_4:62960961-62960980 | None:intergenic | 35.0% | |
| CAACTAAATCATCTCATCAC+TGG | - | chr5_4:62961028-62961047 | None:intergenic | 35.0% | |
| CAGTGATGAGATGATTTAGT+TGG | + | chr5_4:62961026-62961045 | Msa0863160:three_prime_UTR | 35.0% | |
| TATTACAGAAGAATGAGCTC+GGG | - | chr5_4:62961162-62961181 | None:intergenic | 35.0% | |
| CTATTACAGAAGAATGAGCT+CGG | - | chr5_4:62961163-62961182 | None:intergenic | 35.0% | |
| GAATTCTTTATCCCTGTCAT+CGG | + | chr5_4:62961227-62961246 | Msa0863160:intron | 35.0% | |
| !! | TAACGTTAAGTTGGGAGAGT+TGG | + | chr5_4:62955692-62955711 | Msa0863160:five_prime_UTR | 40.0% |
| GGCATGATTAAAAGCAAAGC+TGG | + | chr5_4:62955713-62955732 | Msa0863160:five_prime_UTR | 40.0% | |
| ! | GACATAAGAAATCCGCGTTT+TGG | + | chr5_4:62955822-62955841 | Msa0863160:five_prime_UTR | 40.0% |
| GTCTCGTCAACATCTTAAAC+AGG | + | chr5_4:62956114-62956133 | Msa0863160:CDS | 40.0% | |
| GATTGCTTGTTTGGAGAGTT+AGG | + | chr5_4:62956177-62956196 | Msa0863160:intron | 40.0% | |
| GCAAAGCAGTGAATTCTCAT+TGG | - | chr5_4:62956320-62956339 | None:intergenic | 40.0% | |
| !! | TCCATTTTTCCATGTCACGT+GGG | - | chr5_4:62956351-62956370 | None:intergenic | 40.0% |
| !! | ATCCATTTTTCCATGTCACG+TGG | - | chr5_4:62956352-62956371 | None:intergenic | 40.0% |
| TAGGAACTAACCTAAAGAGG+TGG | - | chr5_4:62956498-62956517 | None:intergenic | 40.0% | |
| ACCGTCGGTGCATATATATT+AGG | + | chr5_4:62956581-62956600 | Msa0863160:intron | 40.0% | |
| AGATCGTGGAAAACAACAGT+TGG | - | chr5_4:62956975-62956994 | None:intergenic | 40.0% | |
| CTCCTTACCAAAATAAGGTG+TGG | + | chr5_4:62957342-62957361 | Msa0863160:intron | 40.0% | |
| !! | CAATAGCCCACACCTTATTT+TGG | - | chr5_4:62957352-62957371 | None:intergenic | 40.0% |
| ATTGCAGATTCAAAGCGACA+AGG | + | chr5_4:62957368-62957387 | Msa0863160:CDS | 40.0% | |
| TCAAAGCGACAAGGTTATCT+AGG | + | chr5_4:62957377-62957396 | Msa0863160:CDS | 40.0% | |
| CTAGTTTCTTTGGCACAATC+TGG | + | chr5_4:62957500-62957519 | Msa0863160:CDS | 40.0% | |
| CATGATCTGCTGAATAGTGA+TGG | + | chr5_4:62957536-62957555 | Msa0863160:CDS | 40.0% | |
| ACGTCCAAACCTTCCAATAT+GGG | - | chr5_4:62957750-62957769 | None:intergenic | 40.0% | |
| TACGTCCAAACCTTCCAATA+TGG | - | chr5_4:62957751-62957770 | None:intergenic | 40.0% | |
| AAAGCATAAACAAAGCGACC+TGG | + | chr5_4:62957879-62957898 | Msa0863160:intron | 40.0% | |
| AGCCATCACTATCAAGTAGT+TGG | + | chr5_4:62958016-62958035 | Msa0863160:intron | 40.0% | |
| TTCTTCGAAGTCCTCCAAAA+AGG | + | chr5_4:62958041-62958060 | Msa0863160:intron | 40.0% | |
| ! | TAGCAGAATGCTTGCCTTTT+TGG | - | chr5_4:62958058-62958077 | None:intergenic | 40.0% |
| GACACAAAATGAACCTAAGC+TGG | - | chr5_4:62958212-62958231 | None:intergenic | 40.0% | |
| !! | GTAGAATGAAAAGTATCCCC+AGG | + | chr5_4:62958243-62958262 | Msa0863160:intron | 40.0% |
| ! | AAAGTATCCCCAGGAATGTT+TGG | + | chr5_4:62958252-62958271 | Msa0863160:intron | 40.0% |
| TTAACCGACCAAACATTCCT+GGG | - | chr5_4:62958263-62958282 | None:intergenic | 40.0% | |
| ATTAACCGACCAAACATTCC+TGG | - | chr5_4:62958264-62958283 | None:intergenic | 40.0% | |
| TGGTCGGTTAATGTCTGAAT+AGG | + | chr5_4:62958272-62958291 | Msa0863160:intron | 40.0% | |
| ACCAGTTGAGTATCACTGTT+GGG | - | chr5_4:62958362-62958381 | None:intergenic | 40.0% | |
| ! | CTTCTAAAGGCTTCAACTTC+TGG | - | chr5_4:62958625-62958644 | None:intergenic | 40.0% |
| GGGAGACAAAGTCATTAAAG+CGG | - | chr5_4:62958655-62958674 | None:intergenic | 40.0% | |
| TGACTTTGTCTCCCCATTAT+TGG | + | chr5_4:62958661-62958680 | Msa0863160:CDS | 40.0% | |
| ! | TGACCCAAAAGCATAACCAT+AGG | - | chr5_4:62958846-62958865 | None:intergenic | 40.0% |
| !! | CTTTTGGGTCAATACTCAAC+TGG | + | chr5_4:62958855-62958874 | Msa0863160:CDS | 40.0% |
| CTGCTTAAATGTAGCTATCC+AGG | + | chr5_4:62958900-62958919 | Msa0863160:CDS | 40.0% | |
| AGAAAGCAGAATTACTTGCC+TGG | - | chr5_4:62958921-62958940 | None:intergenic | 40.0% | |
| GTGTCGTACTTAGACATTGA+TGG | - | chr5_4:62958950-62958969 | None:intergenic | 40.0% | |
| CTGTCAATAGGTGCACATAT+TGG | + | chr5_4:62959025-62959044 | Msa0863160:intron | 40.0% | |
| !! | CTTCAGGTATAAGAGTGCTT+TGG | - | chr5_4:62959115-62959134 | None:intergenic | 40.0% |
| ACGCTTATTCAATGGAGCTA+GGG | - | chr5_4:62959407-62959426 | None:intergenic | 40.0% | |
| TACGCTTATTCAATGGAGCT+AGG | - | chr5_4:62959408-62959427 | None:intergenic | 40.0% | |
| ACTGGAGCACATTACATTTG+TGG | + | chr5_4:62959481-62959500 | Msa0863160:CDS | 40.0% | |
| ATTACATTTGTGGACAGTCC+TGG | + | chr5_4:62959491-62959510 | Msa0863160:CDS | 40.0% | |
| GCTTGTGAGGATCAAACAAT+AGG | - | chr5_4:62959607-62959626 | None:intergenic | 40.0% | |
| TCGCTAATATCAAGCTTGTG+AGG | - | chr5_4:62959620-62959639 | None:intergenic | 40.0% | |
| ATCGCGTGATATCATCCTTA+CGG | + | chr5_4:62959648-62959667 | Msa0863160:CDS | 40.0% | |
| ATATACACACGAGTGACTTC+GGG | - | chr5_4:62959879-62959898 | None:intergenic | 40.0% | |
| GAAGTCACTCGTGTGTATAT+TGG | + | chr5_4:62959879-62959898 | Msa0863160:CDS | 40.0% | |
| TTCTCTTTGACATGGAGTGT+TGG | + | chr5_4:62959945-62959964 | Msa0863160:intron | 40.0% | |
| GAAAGAGACCAATGTGTTTC+TGG | + | chr5_4:62959967-62959986 | Msa0863160:intron | 40.0% | |
| TAGAGCTTCCAGAAACACAT+TGG | - | chr5_4:62959978-62959997 | None:intergenic | 40.0% | |
| !! | TCTTCTTGGGTCATTTTCTC+TGG | + | chr5_4:62960455-62960474 | Msa0863160:intron | 40.0% |
| TTTGGCAGGTGAATTTGGAA+AGG | + | chr5_4:62960725-62960744 | Msa0863160:CDS | 40.0% | |
| TCAACATTTGGAAAGTCACC+AGG | - | chr5_4:62960849-62960868 | None:intergenic | 40.0% | |
| ATTACAGAAGAATGAGCTCG+GGG | - | chr5_4:62961161-62961180 | None:intergenic | 40.0% | |
| TTCACGCTTCTTCCAAAACG+CGG | - | chr5_4:62955837-62955856 | None:intergenic | 45.0% | |
| !! | TGGTTCAATTACGCCGATTC+AGG | + | chr5_4:62955952-62955971 | Msa0863160:CDS | 45.0% |
| GATTGTGATGGTCGCATAAC+TGG | + | chr5_4:62956055-62956074 | Msa0863160:intron | 45.0% | |
| AGACATGGCGAAAAACTTGG+TGG | - | chr5_4:62956089-62956108 | None:intergenic | 45.0% | |
| !! | CCATTTTTCCATGTCACGTG+GGG | - | chr5_4:62956350-62956369 | None:intergenic | 45.0% |
| CTTCATGATGCCACCTCTTT+AGG | + | chr5_4:62956485-62956504 | Msa0863160:intron | 45.0% | |
| GTGTCTGTAATTGCAGATCG+TGG | - | chr5_4:62956989-62957008 | None:intergenic | 45.0% | |
| !!! | GCCCACACCTTATTTTGGTA+AGG | - | chr5_4:62957347-62957366 | None:intergenic | 45.0% |
| CTGAAACCTCCCATATTGGA+AGG | + | chr5_4:62957738-62957757 | Msa0863160:CDS | 45.0% | |
| ACCTCCCATATTGGAAGGTT+TGG | + | chr5_4:62957743-62957762 | Msa0863160:CDS | 45.0% | |
| TCCAAACCTTCCAATATGGG+AGG | - | chr5_4:62957747-62957766 | None:intergenic | 45.0% | |
| CAAAGCGACCTGGATGTAAA+TGG | + | chr5_4:62957889-62957908 | Msa0863160:intron | 45.0% | |
| ! | CAGAATGCTTGCCTTTTTGG+AGG | - | chr5_4:62958055-62958074 | None:intergenic | 45.0% |
| CTAGCGGCAGATAAGGATAA+TGG | - | chr5_4:62958119-62958138 | None:intergenic | 45.0% | |
| TATCCCCAGGAATGTTTGGT+CGG | + | chr5_4:62958256-62958275 | Msa0863160:intron | 45.0% | |
| TAACCGACCAAACATTCCTG+GGG | - | chr5_4:62958262-62958281 | None:intergenic | 45.0% | |
| CACCAGTTGAGTATCACTGT+TGG | - | chr5_4:62958363-62958382 | None:intergenic | 45.0% | |
| ATTGATGTCACGGAGGAAAG+TGG | - | chr5_4:62958575-62958594 | None:intergenic | 45.0% | |
| AACCTATCAGTTGTAGGCTC+AGG | - | chr5_4:62959052-62959071 | None:intergenic | 45.0% | |
| !!! | TGGGAGAGAGTCTAGTTTTC+TGG | - | chr5_4:62959095-62959114 | None:intergenic | 45.0% |
| !! | AATGGTGTTGGTGTACAGTC+TGG | + | chr5_4:62959249-62959268 | Msa0863160:intron | 45.0% |
| TGGACAGCAACTGTATTTCC+AGG | - | chr5_4:62959294-62959313 | None:intergenic | 45.0% | |
| CACTAAATGGCATGTCTGCT+TGG | - | chr5_4:62959314-62959333 | None:intergenic | 45.0% | |
| ! | CAAGCAGACATGCCATTTAG+TGG | + | chr5_4:62959312-62959331 | Msa0863160:CDS | 45.0% |
| !! | GACAGTCCTGGAGTTTTATC+TGG | + | chr5_4:62959503-62959522 | Msa0863160:CDS | 45.0% |
| TCGCGTGATATCATCCTTAC+GGG | + | chr5_4:62959649-62959668 | Msa0863160:CDS | 45.0% | |
| TTTGTCATCATGTCCCCGTA+AGG | - | chr5_4:62959666-62959685 | None:intergenic | 45.0% | |
| AGGGAATGCTGACCTGTATT+TGG | + | chr5_4:62959786-62959805 | Msa0863160:intron | 45.0% | |
| TTGCAGCTGATGAGGGTTTA+TGG | + | chr5_4:62959816-62959835 | Msa0863160:intron | 45.0% | |
| GGGTTTATGGAGCCTTAATG+TGG | + | chr5_4:62959829-62959848 | Msa0863160:CDS | 45.0% | |
| CCACTGACAGCATCATTTAC+AGG | - | chr5_4:62960120-62960139 | None:intergenic | 45.0% | |
| CCTGTAAATGATGCTGTCAG+TGG | + | chr5_4:62960117-62960136 | Msa0863160:CDS | 45.0% | |
| TGTCAGTGGTCCAATTGGAA+AGG | + | chr5_4:62960131-62960150 | Msa0863160:CDS | 45.0% | |
| AAGCATGTATCTTGGCTGCT+CGG | - | chr5_4:62960629-62960648 | None:intergenic | 45.0% | |
| GAAAGTCACCAGGAGGTAAA+TGG | - | chr5_4:62960839-62960858 | None:intergenic | 45.0% | |
| ACATTTGGAAAGTCACCAGG+AGG | - | chr5_4:62960846-62960865 | None:intergenic | 45.0% | |
| CATTTCAGAGAGAGCTTGAG+TGG | + | chr5_4:62960870-62960889 | Msa0863160:CDS | 45.0% | |
| !! | TAAAATAATAATTAAAAAGA+AGG | - | chr5_4:62955999-62956018 | None:intergenic | 5.0% |
| GAGTTCGATCCGATCCCAAT+CGG | + | chr5_4:62955892-62955911 | Msa0863160:CDS | 50.0% | |
| !! | CTTTGGAGCACGAACCGATT+GGG | - | chr5_4:62955909-62955928 | None:intergenic | 50.0% |
| !! | TCTTTGGAGCACGAACCGAT+TGG | - | chr5_4:62955910-62955929 | None:intergenic | 50.0% |
| CCCCACGTGACATGGAAAAA+TGG | + | chr5_4:62956347-62956366 | Msa0863160:intron | 50.0% | |
| CACTATAGACTGTTGCACGC+CGG | + | chr5_4:62956941-62956960 | Msa0863160:intron | 50.0% | |
| GTTCTCTCTAGCGGCAGATA+AGG | - | chr5_4:62958126-62958145 | None:intergenic | 50.0% | |
| GCCCAACAGTGATACTCAAC+TGG | + | chr5_4:62958358-62958377 | Msa0863160:intron | 50.0% | |
| GACCTGAGCCTACAACTGAT+AGG | + | chr5_4:62959047-62959066 | Msa0863160:CDS | 50.0% | |
| CTAGGGCAACTTACAGGATG+AGG | - | chr5_4:62959390-62959409 | None:intergenic | 50.0% | |
| ATGGAGCTAGGGCAACTTAC+AGG | - | chr5_4:62959396-62959415 | None:intergenic | 50.0% | |
| CGCGTGATATCATCCTTACG+GGG | + | chr5_4:62959650-62959669 | Msa0863160:CDS | 50.0% | |
| TGCAACATCGGGCCAAATAC+AGG | - | chr5_4:62959801-62959820 | None:intergenic | 50.0% | |
| ACCCTCATCAGCTGCAACAT+CGG | - | chr5_4:62959813-62959832 | None:intergenic | 50.0% | |
| GGAGCCTTAATGTGGTCACT+CGG | + | chr5_4:62959837-62959856 | Msa0863160:CDS | 50.0% | |
| GAGCCTTAATGTGGTCACTC+GGG | + | chr5_4:62959838-62959857 | Msa0863160:CDS | 50.0% | |
| CTTCCCGAGTGACCACATTA+AGG | - | chr5_4:62959844-62959863 | None:intergenic | 50.0% | |
| CTTAATGTGGTCACTCGGGA+AGG | + | chr5_4:62959842-62959861 | Msa0863160:CDS | 50.0% | |
| GATGCTGTCAGTGGTCCAAT+TGG | + | chr5_4:62960126-62960145 | Msa0863160:CDS | 50.0% | |
| AGCATGTATCTTGGCTGCTC+GGG | - | chr5_4:62960628-62960647 | None:intergenic | 50.0% | |
| AGGGAGTTCCATTTACCTCC+TGG | + | chr5_4:62960828-62960847 | Msa0863160:CDS | 50.0% | |
| GAACTTCGTTGCCGATGACA+GGG | - | chr5_4:62961241-62961260 | None:intergenic | 50.0% | |
| GAGCACGAACCGATTGGGAT+CGG | - | chr5_4:62955904-62955923 | None:intergenic | 55.0% | |
| CCAGGAATGCTTCTCTCGTC+AGG | - | chr5_4:62959276-62959295 | None:intergenic | 55.0% | |
| !! | CCTGACGAGAGAAGCATTCC+TGG | + | chr5_4:62959273-62959292 | Msa0863160:CDS | 55.0% |
| CCCTCATCAGCTGCAACATC+GGG | - | chr5_4:62959812-62959831 | None:intergenic | 55.0% | |
| CCCGATGTTGCAGCTGATGA+GGG | + | chr5_4:62959809-62959828 | Msa0863160:intron | 55.0% | |
| CTTCGATCACAAGCCGCCTT+TGG | - | chr5_4:62960207-62960226 | None:intergenic | 55.0% | |
| GGAACTTCGTTGCCGATGAC+AGG | - | chr5_4:62961242-62961261 | None:intergenic | 55.0% | |
| ACGGAGGAAAGTGGCACCTG+AGG | - | chr5_4:62958566-62958585 | None:intergenic | 60.0% | |
| GCCCGATGTTGCAGCTGATG+AGG | + | chr5_4:62959808-62959827 | Msa0863160:intron | 60.0% | |
| CCATGTCACGTGGGGTGACG+TGG | - | chr5_4:62956342-62956361 | None:intergenic | 65.0% | |
| CCACGTCACCCCACGTGACA+TGG | + | chr5_4:62956339-62956358 | Msa0863160:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 62955683 | 62961294 | 62955683 | ID=Msa0863160;Name=Msa0863160 |
| chr5_4 | mRNA | 62955683 | 62961294 | 62955683 | ID=Msa0863160-mRNA-1;Parent=Msa0863160;Name=Msa0863160-mRNA-1;_AED=0.19;_eAED=0.19;_QI=206|0.78|0.86|1|0.78|0.73|15|263|514 |
| chr5_4 | exon | 62955683 | 62955973 | 62955683 | ID=Msa0863160-mRNA-1:exon:19724;Parent=Msa0863160-mRNA-1 |
| chr5_4 | exon | 62956056 | 62956135 | 62956056 | ID=Msa0863160-mRNA-1:exon:19725;Parent=Msa0863160-mRNA-1 |
| chr5_4 | exon | 62957359 | 62957427 | 62957359 | ID=Msa0863160-mRNA-1:exon:19726;Parent=Msa0863160-mRNA-1 |
| chr5_4 | exon | 62957500 | 62957557 | 62957500 | ID=Msa0863160-mRNA-1:exon:19727;Parent=Msa0863160-mRNA-1 |
| chr5_4 | exon | 62957724 | 62957779 | 62957724 | ID=Msa0863160-mRNA-1:exon:19728;Parent=Msa0863160-mRNA-1 |
| chr5_4 | exon | 62958569 | 62958690 | 62958569 | ID=Msa0863160-mRNA-1:exon:19729;Parent=Msa0863160-mRNA-1 |
| chr5_4 | exon | 62958819 | 62958925 | 62958819 | ID=Msa0863160-mRNA-1:exon:19730;Parent=Msa0863160-mRNA-1 |
| chr5_4 | exon | 62959035 | 62959084 | 62959035 | ID=Msa0863160-mRNA-1:exon:19731;Parent=Msa0863160-mRNA-1 |
| chr5_4 | exon | 62959267 | 62959395 | 62959267 | ID=Msa0863160-mRNA-1:exon:19732;Parent=Msa0863160-mRNA-1 |
| chr5_4 | exon | 62959479 | 62959730 | 62959479 | ID=Msa0863160-mRNA-1:exon:19733;Parent=Msa0863160-mRNA-1 |
| chr5_4 | exon | 62959822 | 62959901 | 62959822 | ID=Msa0863160-mRNA-1:exon:19734;Parent=Msa0863160-mRNA-1 |
| chr5_4 | exon | 62960101 | 62960227 | 62960101 | ID=Msa0863160-mRNA-1:exon:19735;Parent=Msa0863160-mRNA-1 |
| chr5_4 | exon | 62960603 | 62960746 | 62960603 | ID=Msa0863160-mRNA-1:exon:19736;Parent=Msa0863160-mRNA-1 |
| chr5_4 | exon | 62960822 | 62961233 | 62960822 | ID=Msa0863160-mRNA-1:exon:19737;Parent=Msa0863160-mRNA-1 |
| chr5_4 | exon | 62961258 | 62961294 | 62961258 | ID=Msa0863160-mRNA-1:exon:19738;Parent=Msa0863160-mRNA-1 |
| chr5_4 | five_prime_UTR | 62955683 | 62955888 | 62955683 | ID=Msa0863160-mRNA-1:five_prime_utr;Parent=Msa0863160-mRNA-1 |
| chr5_4 | CDS | 62955889 | 62955973 | 62955889 | ID=Msa0863160-mRNA-1:cds;Parent=Msa0863160-mRNA-1 |
| chr5_4 | CDS | 62956056 | 62956135 | 62956056 | ID=Msa0863160-mRNA-1:cds;Parent=Msa0863160-mRNA-1 |
| chr5_4 | CDS | 62957359 | 62957427 | 62957359 | ID=Msa0863160-mRNA-1:cds;Parent=Msa0863160-mRNA-1 |
| chr5_4 | CDS | 62957500 | 62957557 | 62957500 | ID=Msa0863160-mRNA-1:cds;Parent=Msa0863160-mRNA-1 |
| chr5_4 | CDS | 62957724 | 62957779 | 62957724 | ID=Msa0863160-mRNA-1:cds;Parent=Msa0863160-mRNA-1 |
| chr5_4 | CDS | 62958569 | 62958690 | 62958569 | ID=Msa0863160-mRNA-1:cds;Parent=Msa0863160-mRNA-1 |
| chr5_4 | CDS | 62958819 | 62958925 | 62958819 | ID=Msa0863160-mRNA-1:cds;Parent=Msa0863160-mRNA-1 |
| chr5_4 | CDS | 62959035 | 62959084 | 62959035 | ID=Msa0863160-mRNA-1:cds;Parent=Msa0863160-mRNA-1 |
| chr5_4 | CDS | 62959267 | 62959395 | 62959267 | ID=Msa0863160-mRNA-1:cds;Parent=Msa0863160-mRNA-1 |
| chr5_4 | CDS | 62959479 | 62959730 | 62959479 | ID=Msa0863160-mRNA-1:cds;Parent=Msa0863160-mRNA-1 |
| chr5_4 | CDS | 62959822 | 62959901 | 62959822 | ID=Msa0863160-mRNA-1:cds;Parent=Msa0863160-mRNA-1 |
| chr5_4 | CDS | 62960101 | 62960227 | 62960101 | ID=Msa0863160-mRNA-1:cds;Parent=Msa0863160-mRNA-1 |
| chr5_4 | CDS | 62960603 | 62960746 | 62960603 | ID=Msa0863160-mRNA-1:cds;Parent=Msa0863160-mRNA-1 |
| chr5_4 | CDS | 62960822 | 62961007 | 62960822 | ID=Msa0863160-mRNA-1:cds;Parent=Msa0863160-mRNA-1 |
| chr5_4 | three_prime_UTR | 62961008 | 62961233 | 62961008 | ID=Msa0863160-mRNA-1:three_prime_utr;Parent=Msa0863160-mRNA-1 |
| chr5_4 | three_prime_UTR | 62961258 | 62961294 | 62961258 | ID=Msa0863160-mRNA-1:three_prime_utr;Parent=Msa0863160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
