AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0095360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095360 MtrunA17_Chr5g0428621 98.337 481 8 0 1 481 1 481 0.0 975
Msa0095360 MtrunA17_Chr7g0245321 62.222 450 127 8 38 481 14 426 0.0 516
Msa0095360 MtrunA17_Chr3g0128531 72.297 296 81 1 186 480 57 352 4.97e-154 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095360 AT5G01960.1 62.443 442 121 9 45 481 25 426 0.0 537

Find 153 sgRNAs with CRISPR-Local

Find 579 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAACTAATTGCTAATTT+TGG 0.071152 1_2:+79316788 None:intergenic
CTCCTAACCCAACACCTTTC+TGG 0.136413 1_2:-79314791 Msa0095360:CDS
TATACAAACTTCAAAGAAAT+TGG 0.149391 1_2:+79308670 None:intergenic
AACTCATGATGTACAAATTA+AGG 0.154216 1_2:-79308807 Msa0095360:three_prime_UTR
ATTGTCAACAACGGAGTTTC+TGG 0.171090 1_2:-79316452 Msa0095360:CDS
AAGGAAGGAATTATGGAAAT+TGG 0.173609 1_2:+79317004 None:intergenic
GATGCTGGTGGTGCTGTTGC+TGG 0.216559 1_2:-79316407 Msa0095360:CDS
CCTTCTTATATATTACAAAA+AGG 0.220636 1_2:-79313040 Msa0095360:CDS
CAGGTTTCTTTGTCACAATT+TGG 0.224870 1_2:-79315103 Msa0095360:CDS
AAGTGGAAGATCAAAGAAAT+AGG 0.254643 1_2:-79316766 Msa0095360:intron
AAACGAAATCGGTGACAAAA+AGG 0.259302 1_2:+79316526 None:intergenic
AGCGATTAAGGAAGGAATTA+TGG 0.268224 1_2:+79316997 None:intergenic
GCTTATGGATTAAGCGATTA+AGG 0.274026 1_2:+79316985 None:intergenic
ATAGGTTACCTGAGAGCTTA+TGG 0.282402 1_2:+79316970 None:intergenic
GAAGTTGCAATAAGGATTAT+TGG 0.287712 1_2:-79316371 Msa0095360:CDS
TTCATGTGATATGCATTTAC+TGG 0.295179 1_2:-79314857 Msa0095360:CDS
AGAGTGAAGAATTGAGGATT+AGG 0.296016 1_2:-79316711 Msa0095360:five_prime_UTR
AGGAAGGAATTATGGAAATT+GGG 0.305560 1_2:+79317005 None:intergenic
GCATCGTCGTCATCATCTTT+TGG 0.311148 1_2:-79316614 Msa0095360:CDS
GAGTGAAGAATTGAGGATTA+GGG 0.329208 1_2:-79316710 Msa0095360:five_prime_UTR
TGTTTGCAGCGCAACAAGAT+AGG 0.343260 1_2:+79311531 None:intergenic
GCAGCTGATCTTCGCACCTT+TGG 0.351910 1_2:-79308869 Msa0095360:CDS
GGAATGGAACAGAAAATAAC+AGG 0.357993 1_2:-79316136 Msa0095360:CDS
CTTTCTTGATAATGCTTTCA+AGG 0.360532 1_2:+79312630 None:intergenic
TTCATCTTCTTCGTCGTCGC+TGG 0.362832 1_2:-79316192 Msa0095360:CDS
GATGATGAAAAGTCAGAATC+AGG 0.365247 1_2:+79317074 None:intergenic
GATTGTGGTGAGGAGCTTAT+TGG 0.382139 1_2:-79316302 Msa0095360:CDS
GCTGTTGCTGGGAGTAGTGC+AGG 0.386572 1_2:-79316395 Msa0095360:CDS
CGGAGAGAATATTCATAATC+AGG 0.390914 1_2:-79316345 Msa0095360:CDS
ACTCATGATGTACAAATTAA+GGG 0.395875 1_2:-79308806 Msa0095360:three_prime_UTR
TCAAGAAAGGAAGTTCATTA+CGG 0.399518 1_2:-79312616 Msa0095360:CDS
CAGGTTGATGGTGAGGCTGC+TGG 0.403813 1_2:-79316158 Msa0095360:CDS
AGAATATTCATAATCAGGTT+GGG 0.404440 1_2:-79316340 Msa0095360:CDS
CAAGAAAGGAAGTTCATTAC+GGG 0.406319 1_2:-79312615 Msa0095360:CDS
TGTGTTAAAGATGGAAACTT+TGG 0.413389 1_2:-79316672 Msa0095360:exon
TAAGAAGCAGACAGCTTTGA+AGG 0.417319 1_2:-79315045 Msa0095360:intron
CATGAGTTGATTAAAACAAC+TGG 0.418322 1_2:+79308822 None:intergenic
ATGCTGGTGGTGCTGTTGCT+GGG 0.418694 1_2:-79316406 Msa0095360:CDS
GTGCAGGGGAAGTTGCAATA+AGG 0.423075 1_2:-79316379 Msa0095360:CDS
TTGCTGAGATACTCAAAATC+GGG 0.423104 1_2:-79308781 Msa0095360:three_prime_UTR
CATAATCAGGTTGGGGAAGT+AGG 0.423930 1_2:-79316332 Msa0095360:CDS
AGGAAAGTCTCTTTACTTGC+TGG 0.427377 1_2:-79314900 Msa0095360:CDS
TGGTTCGGAGTTACGATCTC+AGG 0.429413 1_2:-79316432 Msa0095360:CDS
GCATGCAATATTCACGATCT+TGG 0.434284 1_2:-79314769 Msa0095360:CDS
TATTCAGGTTTGAGAGAGAA+AGG 0.435355 1_2:-79308922 Msa0095360:intron
GGTCTATGCCACAGCAGAAC+AGG 0.437050 1_2:-79312593 Msa0095360:intron
CGCTTAATCCATAAGCTCTC+AGG 0.441894 1_2:-79316978 Msa0095360:intron
TCTTCTTCGTCGTCGCTGGC+TGG 0.443041 1_2:-79316188 Msa0095360:CDS
ATACAAACTTCAAAGAAATT+GGG 0.447841 1_2:+79308671 None:intergenic
ATTAGCAATTAGTTGAAAAG+TGG 0.448955 1_2:-79316783 Msa0095360:five_prime_UTR
GCTGGTAGTGGACAGGTTGA+TGG 0.451925 1_2:-79316170 Msa0095360:CDS
TTTGCTGAGATACTCAAAAT+CGG 0.452012 1_2:-79308782 Msa0095360:three_prime_UTR
GAGAATGATGCCGAGGGTCG+TGG 0.454511 1_2:-79316251 Msa0095360:CDS
GATGGTGAGGCTGCTGGGAA+TGG 0.455118 1_2:-79316152 Msa0095360:CDS
TCGTCGTCGCTGGCTGGTAG+TGG 0.456677 1_2:-79316182 Msa0095360:CDS
ACCAACAACAAAAGCGAGAA+AGG 0.457541 1_2:+79316050 None:intergenic
GATCTTCGCACCTTTGGAGA+TGG 0.465492 1_2:-79308863 Msa0095360:CDS
TGCCAGAAAGGTGTTGGGTT+AGG 0.468923 1_2:+79314789 None:intergenic
GGAAGGAATTATGGAAATTG+GGG 0.469339 1_2:+79317006 None:intergenic
TTCATTCGACAGCATTTACA+AGG 0.471120 1_2:-79316023 Msa0095360:intron
GAGAATATTCATAATCAGGT+TGG 0.471723 1_2:-79316341 Msa0095360:CDS
TTTAACCAATGCTCTGCATA+GGG 0.474317 1_2:+79308892 None:intergenic
AGTGGAAGATCAAAGAAATA+GGG 0.481606 1_2:-79316765 Msa0095360:intron
GTGTTAAAGATGGAAACTTT+GGG 0.485192 1_2:-79316671 Msa0095360:exon
CAACAACGGAGTTTCTGGTT+CGG 0.487455 1_2:-79316447 Msa0095360:CDS
ACACGCTCAACACTCTCAAA+AGG 0.487468 1_2:-79317116 Msa0095360:five_prime_UTR
GTCGCTGGCTGGTAGTGGAC+AGG 0.489319 1_2:-79316177 Msa0095360:CDS
GAATCAGGGAGCTGAAAACT+TGG 0.490952 1_2:+79317089 None:intergenic
CTTGAAAGCATTATCAAGAA+AGG 0.491166 1_2:-79312629 Msa0095360:CDS
TAGGGGAATGCATCTTCTCT+TGG 0.502312 1_2:+79311550 None:intergenic
CTCAATTCCACCACGACCCT+CGG 0.503303 1_2:+79316241 None:intergenic
TCTATTATATGAGGAATATG+AGG 0.505165 1_2:+79308746 None:intergenic
AATGTTGGTGTAACTTGGTA+TGG 0.506979 1_2:-79316569 Msa0095360:CDS
AGGTTGATGGTGAGGCTGCT+GGG 0.510435 1_2:-79316157 Msa0095360:CDS
ATCATACTATCTATTATATG+AGG 0.510800 1_2:+79308737 None:intergenic
CCTTGTTGCCAACACCAGTC+TGG 0.511066 1_2:-79312861 Msa0095360:CDS
CTTTAACCAATGCTCTGCAT+AGG 0.512609 1_2:+79308891 None:intergenic
TGCCAACACCAGTCTGGTAC+CGG 0.512850 1_2:-79312855 Msa0095360:CDS
ATTGCATGCCAGAAAGGTGT+TGG 0.514467 1_2:+79314783 None:intergenic
GTGAATATTGCATGCCAGAA+AGG 0.515806 1_2:+79314777 None:intergenic
ATGAGGAATATGAGGTTAGC+GGG 0.516794 1_2:+79308754 None:intergenic
GAGAAGTGGAATGCCTGGAT+TGG 0.516962 1_2:-79316276 Msa0095360:CDS
AGGTCATAATTTCCGTCGAC+AGG 0.520503 1_2:-79313013 Msa0095360:intron
TTGCATGCCAGAAAGGTGTT+GGG 0.523282 1_2:+79314784 None:intergenic
GTTTGCAGCGCAACAAGATA+GGG 0.523423 1_2:+79311532 None:intergenic
GCATCATTCTCACCCAATCC+AGG 0.524005 1_2:+79316263 None:intergenic
ATTAATTAAGTTGTTCCACT+TGG 0.525389 1_2:-79308619 Msa0095360:three_prime_UTR
AGGGTTAGAGTGAAGAATTG+AGG 0.526874 1_2:-79316717 Msa0095360:five_prime_UTR
GAGCTTATTGGTGAGAGAAG+TGG 0.528069 1_2:-79316290 Msa0095360:CDS
CAGAAAGGTGTTGGGTTAGG+AGG 0.529451 1_2:+79314792 None:intergenic
CGAGGGTCGTGGTGGAATTG+AGG 0.530269 1_2:-79316240 Msa0095360:CDS
TTACGATCTCAGGTTGATGC+TGG 0.530975 1_2:-79316422 Msa0095360:CDS
CTGATTATGAATATTCTCTC+CGG 0.531233 1_2:+79316346 None:intergenic
CTGTTGCTGGGAGTAGTGCA+GGG 0.533694 1_2:-79316394 Msa0095360:CDS
AGAAGTGGAATGCCTGGATT+GGG 0.538975 1_2:-79316275 Msa0095360:CDS
ATATTCACGATCTTGGTCAA+TGG 0.547880 1_2:-79314762 Msa0095360:intron
CCAGACTGGTGTTGGCAACA+AGG 0.550659 1_2:+79312861 None:intergenic
GCTAACATCTGTGGTTGAGA+AGG 0.553972 1_2:-79312764 Msa0095360:intron
AACCGGTACCAGACTGGTGT+TGG 0.555615 1_2:+79312853 None:intergenic
ATTGATGCGGCAAGTTGCAA+TGG 0.559389 1_2:-79313076 Msa0095360:CDS
GCAATAAGGATTATTGGAGC+CGG 0.561386 1_2:-79316365 Msa0095360:CDS
GGTGAGAGAAGTGGAATGCC+TGG 0.561452 1_2:-79316281 Msa0095360:CDS
GTGTAACTTGGTATGGAATG+AGG 0.561851 1_2:-79316562 Msa0095360:CDS
CGTTCGAGTAATGATTCTGA+GGG 0.563268 1_2:-79316479 Msa0095360:CDS
AACTTTCAAGCTAACATCTG+TGG 0.566297 1_2:-79312773 Msa0095360:CDS
ATAACAATGTTGGTGTAACT+TGG 0.566832 1_2:-79316574 Msa0095360:CDS
GAATATTCATAATCAGGTTG+GGG 0.568125 1_2:-79316339 Msa0095360:CDS
TCAAGGCAGAAATAAAGCAT+TGG 0.568202 1_2:+79312647 None:intergenic
TATGAGGAATATGAGGTTAG+CGG 0.572912 1_2:+79308753 None:intergenic
ATGGATTAAGCGATTAAGGA+AGG 0.573096 1_2:+79316989 None:intergenic
TAACCAATGCTCTGCATAGG+GGG 0.573244 1_2:+79308894 None:intergenic
GCGTTCGAGTAATGATTCTG+AGG 0.573260 1_2:-79316480 Msa0095360:CDS
AAGAATCTGCTCGATCCACT+TGG 0.579271 1_2:+79316073 None:intergenic
GAAACACAGGTTACTGCTGC+CGG 0.586657 1_2:-79311591 Msa0095360:intron
TCAGAGATATGATATTCAGC+TGG 0.589785 1_2:-79316099 Msa0095360:CDS
GTGGAATTGAGGCTAGTGAA+GGG 0.589870 1_2:-79316229 Msa0095360:CDS
TGCTGAGATACTCAAAATCG+GGG 0.592550 1_2:-79308780 Msa0095360:three_prime_UTR
GCATATAGCACATAGGTCAC+CGG 0.609774 1_2:+79311572 None:intergenic
GAAGAAGATGAAGACACAAG+AGG 0.611695 1_2:+79316203 None:intergenic
AATTATTACCTGTTCTGCTG+TGG 0.619122 1_2:+79312585 None:intergenic
CGATCTCAGGTTGATGCTGG+TGG 0.621120 1_2:-79316419 Msa0095360:CDS
AATTTGAAGTGAATTAACAA+TGG 0.624039 1_2:+79317050 None:intergenic
GGTGGAATTGAGGCTAGTGA+AGG 0.624331 1_2:-79316230 Msa0095360:CDS
ATGATGAAAAGTCAGAATCA+GGG 0.624666 1_2:+79317075 None:intergenic
TCTCTTGGCATATAGCACAT+AGG 0.625613 1_2:+79311565 None:intergenic
GACTATCAGATATATTGATG+CGG 0.630026 1_2:-79313089 Msa0095360:intron
TAGTGGACAGGTTGATGGTG+AGG 0.631621 1_2:-79316165 Msa0095360:CDS
TGTTGGGTTAGGAGGTAACA+TGG 0.635457 1_2:+79314800 None:intergenic
ATGTGATATGCATTTACTGG+TGG 0.637599 1_2:-79314854 Msa0095360:CDS
TTTGCAGCGCAACAAGATAG+GGG 0.638343 1_2:+79311533 None:intergenic
ACTTGTTGATCCATCTCCAA+AGG 0.640923 1_2:+79308853 None:intergenic
AATACTGATGATAACAATGT+TGG 0.646042 1_2:-79316584 Msa0095360:CDS
AAGTGTTAATCACCTGTCGA+CGG 0.651807 1_2:+79313001 None:intergenic
TTAGGAGGTAACATGGCCAG+TGG 0.655245 1_2:+79314807 None:intergenic
GCAATTTCAGCACTTCCAAG+TGG 0.655394 1_2:+79308604 None:intergenic
GCGAAGATTGTGTTTCTGAG+TGG 0.661411 1_2:-79311500 Msa0095360:intron
GACGATGCTGATGATAATGA+TGG 0.665344 1_2:+79316629 None:intergenic
TGGAATTGAGGCTAGTGAAG+GGG 0.668643 1_2:-79316228 Msa0095360:CDS
TTAACCAATGCTCTGCATAG+GGG 0.669529 1_2:+79308893 None:intergenic
AGGTTATGATGATTGTGGTG+AGG 0.674430 1_2:-79316312 Msa0095360:CDS
GAGTGTTGAGCGTGTGAATG+CGG 0.674483 1_2:+79317124 None:intergenic
AATGATGCCGAGGGTCGTGG+TGG 0.676790 1_2:-79316248 Msa0095360:CDS
TGTTGCTGGGAGTAGTGCAG+GGG 0.681680 1_2:-79316393 Msa0095360:CDS
ATATTCAGCTGGTTGCCAAG+TGG 0.681905 1_2:-79316088 Msa0095360:CDS
TTGGGTGAGAATGATGCCGA+GGG 0.685926 1_2:-79316257 Msa0095360:CDS
GCTGAGATACTCAAAATCGG+GGG 0.694163 1_2:-79308779 Msa0095360:three_prime_UTR
ATTGGGTGAGAATGATGCCG+AGG 0.696716 1_2:-79316258 Msa0095360:CDS
GAAGTAGGTTATGATGATTG+TGG 0.698058 1_2:-79316317 Msa0095360:CDS
TTAAAGATGGAAACTTTGGG+TGG 0.712597 1_2:-79316668 Msa0095360:exon
GAAAGTTAAATACAACCCTG+TGG 0.717765 1_2:+79312789 None:intergenic
GAATGGAACAGAAAATAACA+GGG 0.719617 1_2:-79316135 Msa0095360:CDS
AAGAAAGGAAGTTCATTACG+GGG 0.731505 1_2:-79312614 Msa0095360:CDS
GAGGGTATGATTGTCAACAA+CGG 0.747863 1_2:-79316461 Msa0095360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAAAAAAAAAAATTA+GGG + chr1_2:79308902-79308921 None:intergenic 0.0%
!! ATATTAAAAAAAAAAAAATT+AGG + chr1_2:79308903-79308922 None:intergenic 0.0%
!!! TTTAAGAATAGAAATTTTAA+AGG + chr1_2:79310727-79310746 None:intergenic 10.0%
!! ATGAAATAGTAAATAATTAA+AGG - chr1_2:79314600-79314619 Msa0095360:intron 10.0%
!!! AATAATTATTATTTTGTTTG+TGG - chr1_2:79314728-79314747 Msa0095360:intron 10.0%
!!! ATAATTATTATTTTGTTTGT+GGG - chr1_2:79314729-79314748 Msa0095360:intron 10.0%
!!! AAACTATTTTTCTAAAATAA+TGG - chr1_2:79316209-79316228 Msa0095360:CDS 10.0%
!! ATAGAATTGAAAAAATTGAA+GGG + chr1_2:79308792-79308811 None:intergenic 15.0%
!! AATAGAATTGAAAAAATTGA+AGG + chr1_2:79308793-79308812 None:intergenic 15.0%
!! AAATAAAGGAAAATTCAAAA+TGG + chr1_2:79309830-79309849 None:intergenic 15.0%
!!! TTTGTATTTTCTTGATATTT+GGG + chr1_2:79309883-79309902 None:intergenic 15.0%
!!! AATATACTGTATTTTTATCT+TGG - chr1_2:79312517-79312536 Msa0095360:intron 15.0%
!! CTTCTTATATATTACAAAAA+GGG - chr1_2:79312684-79312703 Msa0095360:intron 15.0%
!! TTCTTATATATTACAAAAAG+GGG - chr1_2:79312685-79312704 Msa0095360:intron 15.0%
!! TTAATATTATAGAAATCGAA+TGG + chr1_2:79313206-79313225 None:intergenic 15.0%
!!! TTTTATAGTTACACAAATTA+TGG - chr1_2:79313606-79313625 Msa0095360:intron 15.0%
!!! TAAATAATTAAAGGTATGAT+AGG - chr1_2:79314609-79314628 Msa0095360:intron 15.0%
!! TTAGAAGTAATAAAATTGAT+CGG - chr1_2:79314651-79314670 Msa0095360:intron 15.0%
!! ATGTATAATAAGCAAATATA+TGG + chr1_2:79314796-79314815 None:intergenic 15.0%
!! ATATTTGCTTATTATACATT+TGG - chr1_2:79314797-79314816 Msa0095360:CDS 15.0%
!! GTAATCATATTAAGTATTAA+CGG - chr1_2:79315030-79315049 Msa0095360:intron 15.0%
!! TTTAATATCAAATGTAAGAA+TGG - chr1_2:79315074-79315093 Msa0095360:CDS 15.0%
!! AATTCTTAAATTAAGATTCT+TGG - chr1_2:79315356-79315375 Msa0095360:intron 15.0%
!!! GTTTTTAAGCAAAATAAATT+GGG + chr1_2:79315563-79315582 None:intergenic 15.0%
!!! AGTTTTTAAGCAAAATAAAT+TGG + chr1_2:79315564-79315583 None:intergenic 15.0%
!!! TATTTCCAGTTTTAATTAAA+TGG + chr1_2:79315596-79315615 None:intergenic 15.0%
!!! ATTTTTCTAAAATAATGGTT+TGG - chr1_2:79316214-79316233 Msa0095360:CDS 15.0%
!! TCCAAATTTCTTATAAAAAT+AGG + chr1_2:79317144-79317163 None:intergenic 15.0%
!!! TTTTATAAGAAATTTGGATT+TGG - chr1_2:79317146-79317165 Msa0095360:five_prime_UTR 15.0%
!!! AATTTGAAGTGAATTAACAA+TGG + chr1_2:79308676-79308695 None:intergenic 20.0%
!!! TTCAACTAATTGCTAATTTT+GGG + chr1_2:79308937-79308956 None:intergenic 20.0%
!!! TTTCAACTAATTGCTAATTT+TGG + chr1_2:79308938-79308957 None:intergenic 20.0%
!!! TTTTTAGTTTGTGTTAAAGA+TGG - chr1_2:79309042-79309061 Msa0095360:intron 20.0%
!! TATGATCATTATGATCATAT+TGG + chr1_2:79309806-79309825 None:intergenic 20.0%
!! AACAATGGAAAAGTAAATAA+AGG + chr1_2:79309844-79309863 None:intergenic 20.0%
!!! CTTTGTATTTTCTTGATATT+TGG + chr1_2:79309884-79309903 None:intergenic 20.0%
!!! AGAATAGAAATTTTAAAGGT+TGG + chr1_2:79310723-79310742 None:intergenic 20.0%
!!! TGAAATATGTTTTATTTTGC+AGG - chr1_2:79310795-79310814 Msa0095360:intron 20.0%
!!! GAAATATGTTTTATTTTGCA+GGG - chr1_2:79310796-79310815 Msa0095360:intron 20.0%
!! TCCAAGTTTAATTATCAATT+GGG - chr1_2:79311607-79311626 Msa0095360:intron 20.0%
!!! TTTTTTTAAAGATGTTGTGA+AGG + chr1_2:79311818-79311837 None:intergenic 20.0%
!!! TCAAAAACCTATGTTTTTTA+AGG + chr1_2:79312253-79312272 None:intergenic 20.0%
!! CTATTAGAATCAACTAAAAA+AGG - chr1_2:79312387-79312406 Msa0095360:intron 20.0%
!! AATACCAACAAAAATTAGAA+TGG + chr1_2:79312596-79312615 None:intergenic 20.0%
!! ATATCTGATAGTCAATATAA+TGG + chr1_2:79312627-79312646 None:intergenic 20.0%
!!! CCTTTTTGTAATATATAAGA+AGG + chr1_2:79312686-79312705 None:intergenic 20.0%
!! CCTTCTTATATATTACAAAA+AGG - chr1_2:79312683-79312702 Msa0095360:intron 20.0%
!! GATATATTTATATACACTGT+TGG + chr1_2:79313184-79313203 None:intergenic 20.0%
!! TATTATCCTCAAAATTAGAT+AGG - chr1_2:79313814-79313833 Msa0095360:intron 20.0%
!!! TATTTTCCTATCTAATTTTG+AGG + chr1_2:79313823-79313842 None:intergenic 20.0%
!!! AATTTTATGTATTGAAACAC+AGG - chr1_2:79314119-79314138 Msa0095360:intron 20.0%
!!! CCTTTTTAGTAATTGTTTTA+AGG + chr1_2:79314699-79314718 None:intergenic 20.0%
!! CCTTAAAACAATTACTAAAA+AGG - chr1_2:79314696-79314715 Msa0095360:intron 20.0%
!! TTTGGATATTTATTTATGCT+TGG - chr1_2:79314815-79314834 Msa0095360:CDS 20.0%
!! ATTACATATTATGCAAAGAA+AGG + chr1_2:79315015-79315034 None:intergenic 20.0%
!! TTTAATATTCATAGCAAACA+TGG - chr1_2:79315325-79315344 Msa0095360:intron 20.0%
!!! TTTGTTAGAAGGATTATTTT+CGG + chr1_2:79315385-79315404 None:intergenic 20.0%
!!! AATCAAATTTTAATAGCTTG+AGG + chr1_2:79316331-79316350 None:intergenic 20.0%
!! ATCATACTATCTATTATATG+AGG + chr1_2:79316989-79317008 None:intergenic 20.0%
!! ATACAAACTTCAAAGAAATT+GGG + chr1_2:79317055-79317074 None:intergenic 20.0%
!! TATACAAACTTCAAAGAAAT+TGG + chr1_2:79317056-79317075 None:intergenic 20.0%
!!! GCCTATTTTTATAAGAAATT+TGG - chr1_2:79317140-79317159 Msa0095360:five_prime_UTR 20.0%
! ATTGGGGAAAATGAAAAATA+GGG + chr1_2:79308704-79308723 None:intergenic 25.0%
! AATTGGGGAAAATGAAAAAT+AGG + chr1_2:79308705-79308724 None:intergenic 25.0%
!! TCAACTAATTGCTAATTTTG+GGG + chr1_2:79308936-79308955 None:intergenic 25.0%
! ATTAGCAATTAGTTGAAAAG+TGG - chr1_2:79308940-79308959 Msa0095360:intron 25.0%
! AATACTGATGATAACAATGT+TGG - chr1_2:79309139-79309158 Msa0095360:intron 25.0%
! TAATCCAACAAAAACGAAAT+CGG + chr1_2:79309211-79309230 None:intergenic 25.0%
! AGAATATTCATAATCAGGTT+GGG - chr1_2:79309383-79309402 Msa0095360:intron 25.0%
!! TTTTCTTGATATTTGGGAAA+TGG + chr1_2:79309877-79309896 None:intergenic 25.0%
!!! CAAAGTTGTTTTTGATAACT+TGG - chr1_2:79309899-79309918 Msa0095360:intron 25.0%
!! TCATCATGTATAAGTTTGTT+TGG - chr1_2:79310053-79310072 Msa0095360:intron 25.0%
! TCAATGAAAAACATTCAACA+AGG + chr1_2:79310095-79310114 None:intergenic 25.0%
!! AAGTTGCAATTTTCTTACTA+AGG + chr1_2:79310308-79310327 None:intergenic 25.0%
! TAAGGTAAAAATGAATCTTG+TGG - chr1_2:79310337-79310356 Msa0095360:intron 25.0%
!! ATTATTTTCTCCACATTATC+TGG - chr1_2:79310577-79310596 Msa0095360:intron 25.0%
!! TGATGATATTTTATATCCAC+TGG - chr1_2:79310900-79310919 Msa0095360:intron 25.0%
! TTTGTTTGTTCTACTTTACA+TGG - chr1_2:79311044-79311063 Msa0095360:intron 25.0%
!!! TGTACAATTTTTGCTTTGTT+TGG - chr1_2:79311089-79311108 Msa0095360:intron 25.0%
!! AACTTGGAGAATACATTTTA+CGG + chr1_2:79311595-79311614 None:intergenic 25.0%
! CTCCAAGTTTAATTATCAAT+TGG - chr1_2:79311606-79311625 Msa0095360:intron 25.0%
!! TCCCAATTGATAATTAAACT+TGG + chr1_2:79311611-79311630 None:intergenic 25.0%
! TTAACTTTATCCTCAAACAA+TGG + chr1_2:79311646-79311665 None:intergenic 25.0%
! TTTACACGTCTAAGAAAAAT+TGG - chr1_2:79311718-79311737 Msa0095360:intron 25.0%
! TTACACGTCTAAGAAAAATT+GGG - chr1_2:79311719-79311738 Msa0095360:intron 25.0%
! ATATTATTTCACATTGGCAA+TGG - chr1_2:79311755-79311774 Msa0095360:intron 25.0%
! GAAAAAGATTTAGAAGTCAA+TGG + chr1_2:79311957-79311976 None:intergenic 25.0%
! ACAAACATTGAAGCAAATAA+GGG + chr1_2:79312026-79312045 None:intergenic 25.0%
! ATTAGTATTCCCTCTTAAAT+TGG + chr1_2:79312293-79312312 None:intergenic 25.0%
!! AGTTGATTCTAATAGCTAAA+AGG + chr1_2:79312382-79312401 None:intergenic 25.0%
! AATCAACTAAAAAAGGAAAC+TGG - chr1_2:79312394-79312413 Msa0095360:intron 25.0%
! ATCAACTAAAAAAGGAAACT+GGG - chr1_2:79312395-79312414 Msa0095360:intron 25.0%
! AAACAAAATGAGATCAAGAA+AGG + chr1_2:79312493-79312512 None:intergenic 25.0%
! ACAAAAATTAGAATGGCAAA+AGG + chr1_2:79312589-79312608 None:intergenic 25.0%
!! TTTGCCATTCTAATTTTTGT+TGG - chr1_2:79312589-79312608 Msa0095360:intron 25.0%
! ATATATTACAAAAAGGGGAA+AGG - chr1_2:79312690-79312709 Msa0095360:intron 25.0%
!! GAAAATTGCATACTTTTGTA+TGG + chr1_2:79312749-79312768 None:intergenic 25.0%
!! TTTTTCTTGAATAGGGAATA+TGG - chr1_2:79312891-79312910 Msa0095360:CDS 25.0%
! TAGGCACACATATTATAATT+CGG + chr1_2:79313050-79313069 None:intergenic 25.0%
! GATTGATGAAACATATAACT+TGG + chr1_2:79313471-79313490 None:intergenic 25.0%
! TTGTGTAACTATAAAAGTCA+TGG + chr1_2:79313602-79313621 None:intergenic 25.0%
! TTATGGTGATACTATTCATT+AGG - chr1_2:79313623-79313642 Msa0095360:intron 25.0%
! ATTAGATAGGAAAATACCTA+CGG - chr1_2:79313827-79313846 Msa0095360:intron 25.0%
! TTCCTGTGTATGAAATTTAT+TGG - chr1_2:79313865-79313884 Msa0095360:intron 25.0%
! AACCAATAAATTTCATACAC+AGG + chr1_2:79313870-79313889 None:intergenic 25.0%
!!! ATTTATTGGTTGATAGTGTT+TGG - chr1_2:79313879-79313898 Msa0095360:intron 25.0%
! GAAATAAAAAGTTCAAAACG+AGG + chr1_2:79314267-79314286 None:intergenic 25.0%
! ATTCTTGAGAATTGATAAGT+TGG + chr1_2:79314404-79314423 None:intergenic 25.0%
! TATGAAAGTGGAAGTTAAAA+TGG + chr1_2:79314476-79314495 None:intergenic 25.0%
!!! CAATTTTTTTGCTATGAAAG+TGG + chr1_2:79314488-79314507 None:intergenic 25.0%
!! ATAAAATTGATCGGTTGTTT+TGG - chr1_2:79314660-79314679 Msa0095360:intron 25.0%
! TCATATTAAGTATTAACGGT+AGG - chr1_2:79315034-79315053 Msa0095360:intron 25.0%
! AATGAATAATATTCACCAAC+GGG + chr1_2:79315456-79315475 None:intergenic 25.0%
! GAATGAATAATATTCACCAA+CGG + chr1_2:79315457-79315476 None:intergenic 25.0%
!!! AGTTTTAATTAAATGGCTAC+GGG + chr1_2:79315589-79315608 None:intergenic 25.0%
!!! CAGTTTTAATTAAATGGCTA+CGG + chr1_2:79315590-79315609 None:intergenic 25.0%
!!! TTTTAAAACCAATACCCAAA+TGG - chr1_2:79315627-79315646 Msa0095360:intron 25.0%
!!! AACTAGGTTTTAATCAAAAC+TGG - chr1_2:79316142-79316161 Msa0095360:CDS 25.0%
!!! ACTAGGTTTTAATCAAAACT+GGG - chr1_2:79316143-79316162 Msa0095360:CDS 25.0%
!! CAAGTGGAATTTCTAAATTT+TGG + chr1_2:79316359-79316378 None:intergenic 25.0%
! AATATTTGACAACTTTCAAG+TGG + chr1_2:79316375-79316394 None:intergenic 25.0%
! AACTCATGATGTACAAATTA+AGG - chr1_2:79316916-79316935 Msa0095360:intron 25.0%
! ACTCATGATGTACAAATTAA+GGG - chr1_2:79316917-79316936 Msa0095360:intron 25.0%
! TCTATTATATGAGGAATATG+AGG + chr1_2:79316980-79316999 None:intergenic 25.0%
!! ATTAATTAAGTTGTTCCACT+TGG - chr1_2:79317104-79317123 Msa0095360:five_prime_UTR 25.0%
ATGATGAAAAGTCAGAATCA+GGG + chr1_2:79308651-79308670 None:intergenic 30.0%
AGGAAGGAATTATGGAAATT+GGG + chr1_2:79308721-79308740 None:intergenic 30.0%
AAGGAAGGAATTATGGAAAT+TGG + chr1_2:79308722-79308741 None:intergenic 30.0%
TTTATTCCCTAACCTGAAAA+GGG + chr1_2:79308878-79308897 None:intergenic 30.0%
! TTTTATTCCCTAACCTGAAA+AGG + chr1_2:79308879-79308898 None:intergenic 30.0%
AAGTGGAAGATCAAAGAAAT+AGG - chr1_2:79308957-79308976 Msa0095360:intron 30.0%
AGTGGAAGATCAAAGAAATA+GGG - chr1_2:79308958-79308977 Msa0095360:intron 30.0%
AAAGAAATAGGGTTGAAAAG+TGG - chr1_2:79308969-79308988 Msa0095360:intron 30.0%
AAGTGGAAGATCAAAGAAAT+AGG - chr1_2:79308957-79308976 Msa0095360:intron 30.0%
AGTGGAAGATCAAAGAAATA+GGG - chr1_2:79308958-79308977 Msa0095360:intron 30.0%
TGTGTTAAAGATGGAAACTT+TGG - chr1_2:79309051-79309070 Msa0095360:intron 30.0%
GTGTTAAAGATGGAAACTTT+GGG - chr1_2:79309052-79309071 Msa0095360:intron 30.0%
ATAACAATGTTGGTGTAACT+TGG - chr1_2:79309149-79309168 Msa0095360:intron 30.0%
!! TCGTTTTTGTTGGATTATTC+TGG - chr1_2:79309214-79309233 Msa0095360:intron 30.0%
GAAGTTGCAATAAGGATTAT+TGG - chr1_2:79309352-79309371 Msa0095360:intron 30.0%
CTGATTATGAATATTCTCTC+CGG + chr1_2:79309380-79309399 None:intergenic 30.0%
GAGAATATTCATAATCAGGT+TGG - chr1_2:79309382-79309401 Msa0095360:intron 30.0%
! GAATATTCATAATCAGGTTG+GGG - chr1_2:79309384-79309403 Msa0095360:intron 30.0%
GAATGGAACAGAAAATAACA+GGG - chr1_2:79309588-79309607 Msa0095360:intron 30.0%
AATGGAAGAACTACTAACAA+TGG + chr1_2:79309859-79309878 None:intergenic 30.0%
!! TAATTTGCTTGGTAGAATAG+TGG - chr1_2:79309963-79309982 Msa0095360:intron 30.0%
!!! AAGTTTTTTGAGGATCACAA+GGG - chr1_2:79310208-79310227 Msa0095360:intron 30.0%
GAATCAGTAAATAAAAGGTG+TGG + chr1_2:79310239-79310258 None:intergenic 30.0%
CTGCAGAATCAGTAAATAAA+AGG + chr1_2:79310244-79310263 None:intergenic 30.0%
! TGCAGAACAAATCTTTTTAC+TGG - chr1_2:79310259-79310278 Msa0095360:intron 30.0%
TTGCAACTTTGCTAATTGTA+AGG - chr1_2:79310319-79310338 Msa0095360:intron 30.0%
AGCTTTCATATTGTTAACAG+AGG + chr1_2:79310408-79310427 None:intergenic 30.0%
ACAATTGTAACTTACGAGAA+AGG + chr1_2:79310469-79310488 None:intergenic 30.0%
TTCATGTGATATGCATTTAC+TGG - chr1_2:79310866-79310885 Msa0095360:intron 30.0%
!!! GTTGTTTTTATAAGCTATCC+TGG - chr1_2:79311227-79311246 Msa0095360:intron 30.0%
TGATCTTAACTACATATGCA+AGG + chr1_2:79311336-79311355 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - chr1_2:79311353-79311372 Msa0095360:intron 30.0%
!!! ACAATATTGCAGCTGTTTTT+TGG - chr1_2:79311471-79311490 Msa0095360:intron 30.0%
TCATGAAACAACTACAAAGA+AGG + chr1_2:79311518-79311537 None:intergenic 30.0%
GCTGACATATTATTTCACAT+TGG - chr1_2:79311749-79311768 Msa0095360:intron 30.0%
ATACATGAGAACATATAGAC+AGG - chr1_2:79311980-79311999 Msa0095360:intron 30.0%
GACAAACATTGAAGCAAATA+AGG + chr1_2:79312027-79312046 None:intergenic 30.0%
ATTTGATGTATTGTGCATGA+CGG - chr1_2:79312106-79312125 Msa0095360:intron 30.0%
! ACATAGGTTTTTGAACTAGA+TGG - chr1_2:79312259-79312278 Msa0095360:intron 30.0%
GACTATCAGATATATTGATG+CGG - chr1_2:79312634-79312653 Msa0095360:CDS 30.0%
!!! TGACATTGTCTGACTTTTTT+AGG - chr1_2:79312794-79312813 Msa0095360:CDS 30.0%
ATTCCCTATTCAAGAAAAAC+CGG + chr1_2:79312890-79312909 None:intergenic 30.0%
TTATAATATGTGTGCCTATC+AGG - chr1_2:79313052-79313071 Msa0095360:CDS 30.0%
!! CTTTCTTGATAATGCTTTCA+AGG + chr1_2:79313096-79313115 None:intergenic 30.0%
!! CTTGAAAGCATTATCAAGAA+AGG - chr1_2:79313094-79313113 Msa0095360:intron 30.0%
TCAAGAAAGGAAGTTCATTA+CGG - chr1_2:79313107-79313126 Msa0095360:intron 30.0%
CGGAACTGGAAAAAAAAATT+GGG + chr1_2:79313288-79313307 None:intergenic 30.0%
ACGGAACTGGAAAAAAAAAT+TGG + chr1_2:79313289-79313308 None:intergenic 30.0%
!!! TGTTCTGATTCAGTGTTTTT+TGG - chr1_2:79313363-79313382 Msa0095360:intron 30.0%
TACATGAGATGAATTGTAGT+TGG - chr1_2:79313435-79313454 Msa0095360:intron 30.0%
TGATGAAACATATAACTTGG+AGG + chr1_2:79313468-79313487 None:intergenic 30.0%
CATGCATATAACGTATAACT+TGG + chr1_2:79313540-79313559 None:intergenic 30.0%
ACTATAAAAGTCATGGATGA+TGG + chr1_2:79313595-79313614 None:intergenic 30.0%
TTTATTTGTGTACTTGCACA+CGG - chr1_2:79313683-79313702 Msa0095360:intron 30.0%
CAAATATAACAAGCAACCAT+AGG + chr1_2:79313756-79313775 None:intergenic 30.0%
AAACAGTCAGAGGAATATAA+GGG + chr1_2:79313787-79313806 None:intergenic 30.0%
!!! ATATTTTCTGAAACAGTCAG+AGG + chr1_2:79313797-79313816 None:intergenic 30.0%
ATTCATCATGTGTTATGCAA+GGG - chr1_2:79313911-79313930 Msa0095360:intron 30.0%
AAGTTCAAAACGAGGAATAA+AGG + chr1_2:79314259-79314278 None:intergenic 30.0%
! AGAGCGCTAAAAAATTGTTT+AGG - chr1_2:79314338-79314357 Msa0095360:intron 30.0%
GCTAAAAAATTGTTTAGGCT+TGG - chr1_2:79314343-79314362 Msa0095360:intron 30.0%
AAGTGGAAGTTAAAATGGAA+CGG + chr1_2:79314471-79314490 None:intergenic 30.0%
TCAGTGCGATAAATAGTTTA+CGG + chr1_2:79314566-79314585 None:intergenic 30.0%
AGATCTAGAGATTAATGAGT+TGG - chr1_2:79314855-79314874 Msa0095360:CDS 30.0%
! TAATGAGTTGGATCGAAATA+TGG - chr1_2:79314867-79314886 Msa0095360:CDS 30.0%
!!! AATGATTTTTTTTTTCCCCC+AGG + chr1_2:79314983-79315002 None:intergenic 30.0%
AATGGATAAGAGAGAAAGAT+AGG - chr1_2:79315092-79315111 Msa0095360:CDS 30.0%
ATGGATAAGAGAGAAAGATA+GGG - chr1_2:79315093-79315112 Msa0095360:CDS 30.0%
! AGTTGTGTATCATGTTTTCT+AGG - chr1_2:79315172-79315191 Msa0095360:intron 30.0%
CGCAAGAAACAAATATTTCT+AGG + chr1_2:79315299-79315318 None:intergenic 30.0%
!!! AATTTTTTTGGACATCCCTT+GGG + chr1_2:79315493-79315512 None:intergenic 30.0%
!!! GTTTTTTAATTACATACGCC+AGG + chr1_2:79315541-79315560 None:intergenic 30.0%
CGTAGCCATTTAATTAAAAC+TGG - chr1_2:79315588-79315607 Msa0095360:intron 30.0%
!!! TGGGTATTGGTTTTAAAAGT+GGG + chr1_2:79315625-79315644 None:intergenic 30.0%
!!! TTGGGTATTGGTTTTAAAAG+TGG + chr1_2:79315626-79315645 None:intergenic 30.0%
CACATTAAGTTTGACCATTT+GGG + chr1_2:79315644-79315663 None:intergenic 30.0%
AAATCAGATGAACGAATCAA+AGG + chr1_2:79315753-79315772 None:intergenic 30.0%
AGAGTTTCGTTAATAGAACT+GGG - chr1_2:79316036-79316055 Msa0095360:CDS 30.0%
GAAAGTAAAAAAGAAGTCGT+TGG - chr1_2:79316113-79316132 Msa0095360:CDS 30.0%
AAGTCGTTGGATTAATAACT+AGG - chr1_2:79316126-79316145 Msa0095360:CDS 30.0%
TCAAAACCTAAACCAAATAG+TGG - chr1_2:79316241-79316260 Msa0095360:CDS 30.0%
ATAGAAACCAATCCACTATT+TGG + chr1_2:79316256-79316275 None:intergenic 30.0%
!! AAATAGTGGATTGGTTTCTA+TGG - chr1_2:79316255-79316274 Msa0095360:CDS 30.0%
!! GGAATTTCTAAATTTTGGTG+TGG + chr1_2:79316354-79316373 None:intergenic 30.0%
TGAAATAACTACTGATGAAG+AGG - chr1_2:79316394-79316413 Msa0095360:CDS 30.0%
ATACAAGTCATTACACAAAC+TGG - chr1_2:79316695-79316714 Msa0095360:five_prime_UTR 30.0%
TTACACAAACTGGTATTAAG+AGG - chr1_2:79316705-79316724 Msa0095360:five_prime_UTR 30.0%
!! CTGAATAAAGAAGTGTTTGT+TGG + chr1_2:79316788-79316807 None:intergenic 30.0%
CAACAAACACTTCTTTATTC+AGG - chr1_2:79316786-79316805 Msa0095360:five_prime_UTR 30.0%
!! CATGAGTTGATTAAAACAAC+TGG + chr1_2:79316904-79316923 None:intergenic 30.0%
TTTGCTGAGATACTCAAAAT+CGG - chr1_2:79316941-79316960 Msa0095360:intron 30.0%
!! GTTTGTATATGTTTTTGCAC+AGG - chr1_2:79317067-79317086 Msa0095360:five_prime_UTR 30.0%
GATGATGAAAAGTCAGAATC+AGG + chr1_2:79308652-79308671 None:intergenic 35.0%
GGAAGGAATTATGGAAATTG+GGG + chr1_2:79308720-79308739 None:intergenic 35.0%
AGCGATTAAGGAAGGAATTA+TGG + chr1_2:79308729-79308748 None:intergenic 35.0%
! ATGGATTAAGCGATTAAGGA+AGG + chr1_2:79308737-79308756 None:intergenic 35.0%
! GCTTATGGATTAAGCGATTA+AGG + chr1_2:79308741-79308760 None:intergenic 35.0%
!! AAGGGAGTGAATAGCTTTAT+AGG + chr1_2:79308774-79308793 None:intergenic 35.0%
! ATTTTCTTCATCCCCTTTTC+AGG - chr1_2:79308863-79308882 Msa0095360:CDS 35.0%
TTATTCCCTAACCTGAAAAG+GGG + chr1_2:79308877-79308896 None:intergenic 35.0%
AGAGTGAAGAATTGAGGATT+AGG - chr1_2:79309012-79309031 Msa0095360:intron 35.0%
GAGTGAAGAATTGAGGATTA+GGG - chr1_2:79309013-79309032 Msa0095360:intron 35.0%
TTAAAGATGGAAACTTTGGG+TGG - chr1_2:79309055-79309074 Msa0095360:intron 35.0%
AATGTTGGTGTAACTTGGTA+TGG - chr1_2:79309154-79309173 Msa0095360:intron 35.0%
AACGAAATCGGTGACAAAAA+GGG + chr1_2:79309199-79309218 None:intergenic 35.0%
AAACGAAATCGGTGACAAAA+AGG + chr1_2:79309200-79309219 None:intergenic 35.0%
CGGAGAGAATATTCATAATC+AGG - chr1_2:79309378-79309397 Msa0095360:intron 35.0%
GAAGTAGGTTATGATGATTG+TGG - chr1_2:79309406-79309425 Msa0095360:intron 35.0%
GGAATGGAACAGAAAATAAC+AGG - chr1_2:79309587-79309606 Msa0095360:intron 35.0%
TCAGAGATATGATATTCAGC+TGG - chr1_2:79309624-79309643 Msa0095360:intron 35.0%
TTCATTCGACAGCATTTACA+AGG - chr1_2:79309700-79309719 Msa0095360:intron 35.0%
TTTGTTTGTGATGTTGAGCT+TGG - chr1_2:79309762-79309781 Msa0095360:intron 35.0%
!! TTGTTCTGAGGTAATTTGCT+TGG - chr1_2:79309952-79309971 Msa0095360:intron 35.0%
!! AGCATTTTTCGGTTGGATTT+GGG + chr1_2:79310119-79310138 None:intergenic 35.0%
!! AAGCATTTTTCGGTTGGATT+TGG + chr1_2:79310120-79310139 None:intergenic 35.0%
! TAAGCCACACAAGCATTTTT+CGG + chr1_2:79310130-79310149 None:intergenic 35.0%
!!! TTTCTCTAAGCCCCTTTTTT+CGG + chr1_2:79310171-79310190 None:intergenic 35.0%
!!! ATCACGTGAGAAGTTTTTTG+AGG - chr1_2:79310198-79310217 Msa0095360:intron 35.0%
!!! GAAGTTTTTTGAGGATCACA+AGG - chr1_2:79310207-79310226 Msa0095360:intron 35.0%
TTTACAATCTCTTCCTCTGA+AGG - chr1_2:79310500-79310519 Msa0095360:intron 35.0%
CATGCTATAAGTGTGAACAA+TGG + chr1_2:79310534-79310553 None:intergenic 35.0%
! GCATGAGTCTTGTCTTAATT+TGG - chr1_2:79310549-79310568 Msa0095360:intron 35.0%
GAAATGACTACCAGATAATG+TGG + chr1_2:79310590-79310609 None:intergenic 35.0%
CAGGTTTCTTTGTCACAATT+TGG - chr1_2:79310620-79310639 Msa0095360:intron 35.0%
ACATATTTCACTCAGCGTTA+TGG + chr1_2:79310785-79310804 None:intergenic 35.0%
!!! GTTTTATTTTGCAGGGAGAT+AGG - chr1_2:79310803-79310822 Msa0095360:intron 35.0%
ATGTGATATGCATTTACTGG+TGG - chr1_2:79310869-79310888 Msa0095360:intron 35.0%
ATATTCACGATCTTGGTCAA+TGG - chr1_2:79310961-79310980 Msa0095360:intron 35.0%
AGACTGTTTGGAAAAGCTTA+TGG + chr1_2:79311306-79311325 None:intergenic 35.0%
! CTTTTTACTAAGGACCTGTT+TGG + chr1_2:79311370-79311389 None:intergenic 35.0%
!!! CAGGAGCTTACTTTTTACTA+AGG + chr1_2:79311380-79311399 None:intergenic 35.0%
ATGCATGACATACATATGCA+AGG - chr1_2:79311431-79311450 Msa0095360:intron 35.0%
TGCATGACATACATATGCAA+GGG - chr1_2:79311432-79311451 Msa0095360:intron 35.0%
! TTAATCGACTCCATTGTTTG+AGG - chr1_2:79311633-79311652 Msa0095360:intron 35.0%
!! TCATTTGGTTGTCACTTTGT+CGG + chr1_2:79312199-79312218 None:intergenic 35.0%
AAGTGACAACCAAATGAGAA+AGG - chr1_2:79312202-79312221 Msa0095360:intron 35.0%
GGCTGAACCTTAAAAAACAT+AGG - chr1_2:79312243-79312262 Msa0095360:intron 35.0%
GCTCTAGTACCAATTTAAGA+GGG - chr1_2:79312281-79312300 Msa0095360:intron 35.0%
ATCCCTTCAGATTGTAATTG+TGG - chr1_2:79312563-79312582 Msa0095360:intron 35.0%
!!! GTACCGGTTTTTCTTGAATA+GGG - chr1_2:79312884-79312903 Msa0095360:CDS 35.0%
GAAAGTTAAATACAACCCTG+TGG + chr1_2:79312937-79312956 None:intergenic 35.0%
AACTTTCAAGCTAACATCTG+TGG - chr1_2:79312950-79312969 Msa0095360:intron 35.0%
!! AATAAAGCATTGGACCTGAT+AGG + chr1_2:79313069-79313088 None:intergenic 35.0%
TCAAGGCAGAAATAAAGCAT+TGG + chr1_2:79313079-79313098 None:intergenic 35.0%
CAAGAAAGGAAGTTCATTAC+GGG - chr1_2:79313108-79313127 Msa0095360:intron 35.0%
AAGAAAGGAAGTTCATTACG+GGG - chr1_2:79313109-79313128 Msa0095360:intron 35.0%
AATTATTACCTGTTCTGCTG+TGG + chr1_2:79313141-79313160 None:intergenic 35.0%
AAATTCCACATGGCATTAGA+GGG + chr1_2:79313236-79313255 None:intergenic 35.0%
AAAATTCCACATGGCATTAG+AGG + chr1_2:79313237-79313256 None:intergenic 35.0%
! TCTAATGCCATGTGGAATTT+TGG - chr1_2:79313236-79313255 Msa0095360:intron 35.0%
AAAAAAAATTGGGCAGGGAA+TGG + chr1_2:79313278-79313297 None:intergenic 35.0%
CTGGAAAAAAAAATTGGGCA+GGG + chr1_2:79313283-79313302 None:intergenic 35.0%
ACTGGAAAAAAAAATTGGGC+AGG + chr1_2:79313284-79313303 None:intergenic 35.0%
AGTATCTTCCGAAAAACCTA+TGG - chr1_2:79313737-79313756 Msa0095360:intron 35.0%
! ACAAGCAACCATAGGTTTTT+CGG + chr1_2:79313748-79313767 None:intergenic 35.0%
AACAGTCAGAGGAATATAAG+GGG + chr1_2:79313786-79313805 None:intergenic 35.0%
GAAACAGTCAGAGGAATATA+AGG + chr1_2:79313788-79313807 None:intergenic 35.0%
AAAACAAAACAAGCTACCGT+AGG + chr1_2:79313846-79313865 None:intergenic 35.0%
!!! TGGTTGATAGTGTTTGGTTT+TGG - chr1_2:79313885-79313904 Msa0095360:intron 35.0%
!!! GGTTGATAGTGTTTGGTTTT+GGG - chr1_2:79313886-79313905 Msa0095360:intron 35.0%
GATTCATCATGTGTTATGCA+AGG - chr1_2:79313910-79313929 Msa0095360:intron 35.0%
ATGCACAGATACTTTGTTCT+TGG - chr1_2:79314055-79314074 Msa0095360:intron 35.0%
TGCACAGATACTTTGTTCTT+GGG - chr1_2:79314056-79314075 Msa0095360:intron 35.0%
CAAAACGAGGAATAAAGGTA+TGG + chr1_2:79314254-79314273 None:intergenic 35.0%
TTTATCGCACTGAGAGATAT+AGG - chr1_2:79314573-79314592 Msa0095360:intron 35.0%
ATTTATGCTTGGATATGTCC+TGG - chr1_2:79314826-79314845 Msa0095360:CDS 35.0%
TTTATGCTTGGATATGTCCT+GGG - chr1_2:79314827-79314846 Msa0095360:CDS 35.0%
!!! ATCTCTAGATCTTTTTTCCC+AGG + chr1_2:79314847-79314866 None:intergenic 35.0%
! TTGGTTGTTATTGAATGTCC+TGG - chr1_2:79314962-79314981 Msa0095360:intron 35.0%
! TGGTTGTTATTGAATGTCCT+GGG - chr1_2:79314963-79314982 Msa0095360:intron 35.0%
AACTGTAAATAGACTCCACA+TGG + chr1_2:79315156-79315175 None:intergenic 35.0%
! TCGTGAACTTGAAGTATTCT+TGG - chr1_2:79315212-79315231 Msa0095360:intron 35.0%
! CGTGAACTTGAAGTATTCTT+GGG - chr1_2:79315213-79315232 Msa0095360:intron 35.0%
! CAACCTAAACATTTTCACAC+TGG + chr1_2:79315258-79315277 None:intergenic 35.0%
CAGTGTGAAAATGTTTAGGT+TGG - chr1_2:79315256-79315275 Msa0095360:intron 35.0%
TTCAAATATAGTCATGCCCA+AGG - chr1_2:79315474-79315493 Msa0095360:intron 35.0%
TCAAATATAGTCATGCCCAA+GGG - chr1_2:79315475-79315494 Msa0095360:intron 35.0%
!!! CAATTTTTTTGGACATCCCT+TGG + chr1_2:79315494-79315513 None:intergenic 35.0%
CAAGGGATGTCCAAAAAAAT+TGG - chr1_2:79315492-79315511 Msa0095360:intron 35.0%
!!! TTCTGCTGGACCAATTTTTT+TGG + chr1_2:79315505-79315524 None:intergenic 35.0%
!!! GCTTTTTAAAATGGTTCTGC+TGG + chr1_2:79315519-79315538 None:intergenic 35.0%
!! CAGAACCATTTTAAAAAGCC+TGG - chr1_2:79315520-79315539 Msa0095360:intron 35.0%
!! ATACGCCAGGCTTTTTAAAA+TGG + chr1_2:79315528-79315547 None:intergenic 35.0%
AAGTTTGACCATTTGGGTAT+TGG + chr1_2:79315638-79315657 None:intergenic 35.0%
GCACATTAAGTTTGACCATT+TGG + chr1_2:79315645-79315664 None:intergenic 35.0%
AATTCTCAATCCTTTCTCGT+TGG - chr1_2:79315716-79315735 Msa0095360:intron 35.0%
GCACTTGCAGAAAAATCAAA+CGG - chr1_2:79315808-79315827 Msa0095360:intron 35.0%
ATCACTGAATCAGGATATCT+CGG + chr1_2:79315951-79315970 None:intergenic 35.0%
GGAAAAGATATCACTGAATC+AGG + chr1_2:79315960-79315979 None:intergenic 35.0%
! TTCAGTGATATCTTTTCCAG+TGG - chr1_2:79315962-79315981 Msa0095360:intron 35.0%
CAGAGTTTCGTTAATAGAAC+TGG - chr1_2:79316035-79316054 Msa0095360:CDS 35.0%
GAGTTTCGTTAATAGAACTG+GGG - chr1_2:79316037-79316056 Msa0095360:CDS 35.0%
TAATAGAACTGGGGAAACAA+AGG - chr1_2:79316046-79316065 Msa0095360:CDS 35.0%
AATAGAACTGGGGAAACAAA+GGG - chr1_2:79316047-79316066 Msa0095360:CDS 35.0%
ACAGAATAACTCTGAACTGT+TGG - chr1_2:79316081-79316100 Msa0095360:CDS 35.0%
!! ACCTAAACCAAATAGTGGAT+TGG - chr1_2:79316246-79316265 Msa0095360:CDS 35.0%
! ACCAATCCACTATTTGGTTT+AGG + chr1_2:79316250-79316269 None:intergenic 35.0%
! TATTCAGGTTTGAGAGAGAA+AGG - chr1_2:79316801-79316820 Msa0095360:five_prime_UTR 35.0%
TTTAACCAATGCTCTGCATA+GGG + chr1_2:79316834-79316853 None:intergenic 35.0%
TTGCTGAGATACTCAAAATC+GGG - chr1_2:79316942-79316961 Msa0095360:intron 35.0%
TATGAGGAATATGAGGTTAG+CGG + chr1_2:79316973-79316992 None:intergenic 35.0%
ATAGGTTACCTGAGAGCTTA+TGG + chr1_2:79308756-79308775 None:intergenic 40.0%
!!! TTCATCCCCTTTTCAGGTTA+GGG - chr1_2:79308869-79308888 Msa0095360:CDS 40.0%
AGGGTTAGAGTGAAGAATTG+AGG - chr1_2:79309006-79309025 Msa0095360:intron 40.0%
! GACGATGCTGATGATAATGA+TGG + chr1_2:79309097-79309116 None:intergenic 40.0%
GTGTAACTTGGTATGGAATG+AGG - chr1_2:79309161-79309180 Msa0095360:intron 40.0%
ACGAAATCGGTGACAAAAAG+GGG + chr1_2:79309198-79309217 None:intergenic 40.0%
!!! GTCACCGATTTCGTTTTTGT+TGG - chr1_2:79309204-79309223 Msa0095360:intron 40.0%
CGTTCGAGTAATGATTCTGA+GGG - chr1_2:79309244-79309263 Msa0095360:intron 40.0%
! GAGGGTATGATTGTCAACAA+CGG - chr1_2:79309262-79309281 Msa0095360:intron 40.0%
ATTGTCAACAACGGAGTTTC+TGG - chr1_2:79309271-79309290 Msa0095360:intron 40.0%
GCAATAAGGATTATTGGAGC+CGG - chr1_2:79309358-79309377 Msa0095360:intron 40.0%
AGGTTATGATGATTGTGGTG+AGG - chr1_2:79309411-79309430 Msa0095360:intron 40.0%
GAAGAAGATGAAGACACAAG+AGG + chr1_2:79309523-79309542 None:intergenic 40.0%
!! TCCTTTCTCGCTTTTGTTGT+TGG - chr1_2:79309672-79309691 Msa0095360:intron 40.0%
ACCAACAACAAAAGCGAGAA+AGG + chr1_2:79309676-79309695 None:intergenic 40.0%
TTGCTTGGTAGAATAGTGGT+TGG - chr1_2:79309967-79309986 Msa0095360:intron 40.0%
TTTCCATCATTCCCAAATGC+AGG + chr1_2:79309998-79310017 None:intergenic 40.0%
!! TGGCTGTTGTTTCCGAAAAA+AGG - chr1_2:79310156-79310175 Msa0095360:intron 40.0%
!! GGCTGTTGTTTCCGAAAAAA+GGG - chr1_2:79310157-79310176 Msa0095360:intron 40.0%
!! GCTGTTGTTTCCGAAAAAAG+GGG - chr1_2:79310158-79310177 Msa0095360:intron 40.0%
TAAGGTAGAACACCGACAAA+GGG + chr1_2:79310290-79310309 None:intergenic 40.0%
! TAAGAAGCAGACAGCTTTGA+AGG - chr1_2:79310678-79310697 Msa0095360:intron 40.0%
AGGAAAGTCTCTTTACTTGC+TGG - chr1_2:79310823-79310842 Msa0095360:intron 40.0%
GTGAATATTGCATGCCAGAA+AGG + chr1_2:79310949-79310968 None:intergenic 40.0%
GCATGCAATATTCACGATCT+TGG - chr1_2:79310954-79310973 Msa0095360:intron 40.0%
TTGATCTTACATTGCTGCAG+TGG - chr1_2:79311006-79311025 Msa0095360:intron 40.0%
CCTGTAATAATTACAGACCC+CGG - chr1_2:79311396-79311415 Msa0095360:intron 40.0%
CTGTAATAATTACAGACCCC+GGG - chr1_2:79311397-79311416 Msa0095360:intron 40.0%
!!! AGCTGTTTTTTGGTCACTGA+TGG - chr1_2:79311481-79311500 Msa0095360:intron 40.0%
! TTGGTCACTGATGGTGAAAT+TGG - chr1_2:79311490-79311509 Msa0095360:intron 40.0%
AAACTTGCCTATGTGTAGAC+AGG - chr1_2:79311566-79311585 Msa0095360:CDS 40.0%
CTGCAGTCGATATCACATAA+GGG + chr1_2:79311688-79311707 None:intergenic 40.0%
ACTGCAGTCGATATCACATA+AGG + chr1_2:79311689-79311708 None:intergenic 40.0%
TAACCAAGTTGCATCTCAGT+AGG - chr1_2:79311884-79311903 Msa0095360:intron 40.0%
AAGGCTGATCCTTTCTCATT+TGG + chr1_2:79312214-79312233 None:intergenic 40.0%
! GGCTCTAGTACCAATTTAAG+AGG - chr1_2:79312280-79312299 Msa0095360:intron 40.0%
GGCCACAATTACAATCTGAA+GGG + chr1_2:79312568-79312587 None:intergenic 40.0%
AGGCCACAATTACAATCTGA+AGG + chr1_2:79312569-79312588 None:intergenic 40.0%
AAGTGTTAATCACCTGTCGA+CGG + chr1_2:79312725-79312744 None:intergenic 40.0%
!!! GGTACCGGTTTTTCTTGAAT+AGG - chr1_2:79312883-79312902 Msa0095360:CDS 40.0%
! AATGCCATGTGGAATTTTGG+AGG - chr1_2:79313239-79313258 Msa0095360:intron 40.0%
ACATCCTCCAAAATTCCACA+TGG + chr1_2:79313246-79313265 None:intergenic 40.0%
AAAATCCCATGCAACAGCAA+CGG + chr1_2:79313308-79313327 None:intergenic 40.0%
! CGGTGGTGTATATTGTTTTC+TGG - chr1_2:79313703-79313722 Msa0095360:intron 40.0%
ACAGTCAGAGGAATATAAGG+GGG + chr1_2:79313785-79313804 None:intergenic 40.0%
GCACAGATACTTTGTTCTTG+GGG - chr1_2:79314057-79314076 Msa0095360:intron 40.0%
TCTCTTGGCATATAGCACAT+AGG + chr1_2:79314161-79314180 None:intergenic 40.0%
TGTGGGAGAAGTTGAATTCA+TGG - chr1_2:79314746-79314765 Msa0095360:intron 40.0%
AATATATGGCTTTCCCATGG+TGG + chr1_2:79314782-79314801 None:intergenic 40.0%
GCAAATATATGGCTTTCCCA+TGG + chr1_2:79314785-79314804 None:intergenic 40.0%
! GGTTGTTATTGAATGTCCTG+GGG - chr1_2:79314964-79314983 Msa0095360:intron 40.0%
! GTTGTTATTGAATGTCCTGG+GGG - chr1_2:79314965-79314984 Msa0095360:intron 40.0%
TAACGGTAGGTGAGTTTAGT+AGG - chr1_2:79315047-79315066 Msa0095360:CDS 40.0%
! CTTGAAGTATTCTTGGGTGT+TGG - chr1_2:79315219-79315238 Msa0095360:intron 40.0%
!! TGGGTGTTGGACAATGTTTA+AGG - chr1_2:79315232-79315251 Msa0095360:intron 40.0%
AGGCCAGTGTGAAAATGTTT+AGG - chr1_2:79315252-79315271 Msa0095360:intron 40.0%
! AACACCACTGCACTTTTACT+AGG - chr1_2:79315403-79315422 Msa0095360:intron 40.0%
CTAAGGAAAAATGATCCCGT+TGG - chr1_2:79315438-79315457 Msa0095360:intron 40.0%
CAGATGAACGAATCAAAGGA+TGG + chr1_2:79315749-79315768 None:intergenic 40.0%
TGGAGAGAAACGACAAGAAA+GGG + chr1_2:79315780-79315799 None:intergenic 40.0%
TTGGAGAGAAACGACAAGAA+AGG + chr1_2:79315781-79315800 None:intergenic 40.0%
! TTTCTTGTCGTTTCTCTCCA+AGG - chr1_2:79315780-79315799 Msa0095360:intron 40.0%
! TTCTTGTCGTTTCTCTCCAA+GGG - chr1_2:79315781-79315800 Msa0095360:intron 40.0%
AATAATGTCACAGTCGAGTG+AGG - chr1_2:79315847-79315866 Msa0095360:intron 40.0%
! AGTGATATCTTTTCCAGTGG+AGG - chr1_2:79315965-79315984 Msa0095360:intron 40.0%
! GTGATATCTTTTCCAGTGGA+GGG - chr1_2:79315966-79315985 Msa0095360:intron 40.0%
AGTCAGTGAGTGTAGTAGAA+AGG - chr1_2:79316012-79316031 Msa0095360:intron 40.0%
AATCAAAACTGGGTCTGAAC+TGG - chr1_2:79316153-79316172 Msa0095360:CDS 40.0%
ATCAAAACTGGGTCTGAACT+GGG - chr1_2:79316154-79316173 Msa0095360:CDS 40.0%
TTACCGTGACTCATGCTTAA+TGG - chr1_2:79316283-79316302 Msa0095360:CDS 40.0%
! GAGGTATATTTGAGACGTGT+TGG - chr1_2:79316413-79316432 Msa0095360:CDS 40.0%
TTAACCAATGCTCTGCATAG+GGG + chr1_2:79316833-79316852 None:intergenic 40.0%
CTTTAACCAATGCTCTGCAT+AGG + chr1_2:79316835-79316854 None:intergenic 40.0%
! ACTTGTTGATCCATCTCCAA+AGG + chr1_2:79316873-79316892 None:intergenic 40.0%
TGCTGAGATACTCAAAATCG+GGG - chr1_2:79316943-79316962 Msa0095360:intron 40.0%
ATGAGGAATATGAGGTTAGC+GGG + chr1_2:79316972-79316991 None:intergenic 40.0%
ACACGCTCAACACTCTCAAA+AGG - chr1_2:79308607-79308626 Msa0095360:three_prime_UTR 45.0%
GAATCAGGGAGCTGAAAACT+TGG + chr1_2:79308637-79308656 None:intergenic 45.0%
CGCTTAATCCATAAGCTCTC+AGG - chr1_2:79308745-79308764 Msa0095360:three_prime_UTR 45.0%
!!! CTTCATCCCCTTTTCAGGTT+AGG - chr1_2:79308868-79308887 Msa0095360:CDS 45.0%
! GCATCGTCGTCATCATCTTT+TGG - chr1_2:79309109-79309128 Msa0095360:intron 45.0%
! TCGTCGTCATCATCTTTTGG+AGG - chr1_2:79309112-79309131 Msa0095360:intron 45.0%
! CGTCGTCATCATCTTTTGGA+GGG - chr1_2:79309113-79309132 Msa0095360:intron 45.0%
GGTGACAAAAAGGGGTTAAC+AGG + chr1_2:79309190-79309209 None:intergenic 45.0%
GCGTTCGAGTAATGATTCTG+AGG - chr1_2:79309243-79309262 Msa0095360:intron 45.0%
!! CAACAACGGAGTTTCTGGTT+CGG - chr1_2:79309276-79309295 Msa0095360:intron 45.0%
!! TTACGATCTCAGGTTGATGC+TGG - chr1_2:79309301-79309320 Msa0095360:intron 45.0%
!! CATAATCAGGTTGGGGAAGT+AGG - chr1_2:79309391-79309410 Msa0095360:intron 45.0%
GATTGTGGTGAGGAGCTTAT+TGG - chr1_2:79309421-79309440 Msa0095360:intron 45.0%
GAGCTTATTGGTGAGAGAAG+TGG - chr1_2:79309433-79309452 Msa0095360:intron 45.0%
AGAAGTGGAATGCCTGGATT+GGG - chr1_2:79309448-79309467 Msa0095360:intron 45.0%
GTGGAATTGAGGCTAGTGAA+GGG - chr1_2:79309494-79309513 Msa0095360:intron 45.0%
TGGAATTGAGGCTAGTGAAG+GGG - chr1_2:79309495-79309514 Msa0095360:intron 45.0%
ATATTCAGCTGGTTGCCAAG+TGG - chr1_2:79309635-79309654 Msa0095360:intron 45.0%
AAGAATCTGCTCGATCCACT+TGG + chr1_2:79309653-79309672 None:intergenic 45.0%
!! CCACACAAGCATTTTTCGGT+TGG + chr1_2:79310126-79310145 None:intergenic 45.0%
CCAACCGAAAAATGCTTGTG+TGG - chr1_2:79310123-79310142 Msa0095360:intron 45.0%
GCTTGTGTGGCTTACAATAC+TGG - chr1_2:79310136-79310155 Msa0095360:intron 45.0%
!! TTACTGGTTCTCCCCTTTGT+CGG - chr1_2:79310275-79310294 Msa0095360:intron 45.0%
AAGGTAGAACACCGACAAAG+GGG + chr1_2:79310289-79310308 None:intergenic 45.0%
CTAAGGTAGAACACCGACAA+AGG + chr1_2:79310291-79310310 None:intergenic 45.0%
!! AATGGATTGTGCACCTTCAG+AGG + chr1_2:79310516-79310535 None:intergenic 45.0%
AGTCATTTCTGCGAACTTGC+AGG - chr1_2:79310601-79310620 Msa0095360:intron 45.0%
! TGTTGGGTTAGGAGGTAACA+TGG + chr1_2:79310926-79310945 None:intergenic 45.0%
!! TTGCATGCCAGAAAGGTGTT+GGG + chr1_2:79310942-79310961 None:intergenic 45.0%
! ATTGCATGCCAGAAAGGTGT+TGG + chr1_2:79310943-79310962 None:intergenic 45.0%
CACGATCTTGGTCAATGGTA+TGG - chr1_2:79310966-79310985 Msa0095360:intron 45.0%
AAGCTATCCTGGAGAGCTTA+TGG - chr1_2:79311238-79311257 Msa0095360:intron 45.0%
CCTAATTCCATAAGCTCTCC+AGG + chr1_2:79311248-79311267 None:intergenic 45.0%
CCTGGAGAGCTTATGGAATT+AGG - chr1_2:79311245-79311264 Msa0095360:intron 45.0%
CAAGGACTTGTGAGACTGTT+TGG + chr1_2:79311318-79311337 None:intergenic 45.0%
CCGGGGTCTGTAATTATTAC+AGG + chr1_2:79311399-79311418 None:intergenic 45.0%
CAAGTTGCATCTCAGTAGGT+GGG - chr1_2:79311888-79311907 Msa0095360:intron 45.0%
AAGTTGCATCTCAGTAGGTG+GGG - chr1_2:79311889-79311908 Msa0095360:intron 45.0%
GGTTGGATACATGGAACAGA+CGG - chr1_2:79311910-79311929 Msa0095360:intron 45.0%
GTTGGATACATGGAACAGAC+GGG - chr1_2:79311911-79311930 Msa0095360:intron 45.0%
ATGACGGCATCAACACTTAG+AGG - chr1_2:79312122-79312141 Msa0095360:intron 45.0%
GCATCAACACTTAGAGGAGA+CGG - chr1_2:79312128-79312147 Msa0095360:intron 45.0%
! GTCACTTTGTCGGATATCAC+AGG + chr1_2:79312189-79312208 None:intergenic 45.0%
ATGAGAAAGGATCAGCCTTC+TGG - chr1_2:79312215-79312234 Msa0095360:intron 45.0%
ATTGATGCGGCAAGTTGCAA+TGG - chr1_2:79312647-79312666 Msa0095360:CDS 45.0%
AGGTCATAATTTCCGTCGAC+AGG - chr1_2:79312710-79312729 Msa0095360:intron 45.0%
AAGAAAAACCGGTACCAGAC+TGG + chr1_2:79312879-79312898 None:intergenic 45.0%
! TCTTTTCGTCACTGACCACA+GGG - chr1_2:79312919-79312938 Msa0095360:intron 45.0%
GCTAACATCTGTGGTTGAGA+AGG - chr1_2:79312959-79312978 Msa0095360:intron 45.0%
AAAGTCCCTCTAATGCCATG+TGG - chr1_2:79313228-79313247 Msa0095360:intron 45.0%
AAAATTGGGCAGGGAATGGA+GGG + chr1_2:79313274-79313293 None:intergenic 45.0%
AAAAATTGGGCAGGGAATGG+AGG + chr1_2:79313275-79313294 None:intergenic 45.0%
ATTTGTGTACTTGCACACGG+TGG - chr1_2:79313686-79313705 Msa0095360:intron 45.0%
GCATATAGCACATAGGTCAC+CGG + chr1_2:79314154-79314173 None:intergenic 45.0%
TAGGGGAATGCATCTTCTCT+TGG + chr1_2:79314176-79314195 None:intergenic 45.0%
TTTGCAGCGCAACAAGATAG+GGG + chr1_2:79314193-79314212 None:intergenic 45.0%
GTTTGCAGCGCAACAAGATA+GGG + chr1_2:79314194-79314213 None:intergenic 45.0%
TGTTTGCAGCGCAACAAGAT+AGG + chr1_2:79314195-79314214 None:intergenic 45.0%
! GCGAAGATTGTGTTTCTGAG+TGG - chr1_2:79314223-79314242 Msa0095360:intron 45.0%
ATCGCACTGAGAGATATAGG+TGG - chr1_2:79314576-79314595 Msa0095360:intron 45.0%
AGAGAAAGATAGGGTTCCCT+AGG - chr1_2:79315102-79315121 Msa0095360:CDS 45.0%
TGGCAATTGTCAACGACCAA+GGG + chr1_2:79315136-79315155 None:intergenic 45.0%
ATGGCAATTGTCAACGACCA+AGG + chr1_2:79315137-79315156 None:intergenic 45.0%
! GTGCAGTGGTGTTTGTTAGA+AGG + chr1_2:79315396-79315415 None:intergenic 45.0%
! CATGCCTAGTAAAAGTGCAG+TGG + chr1_2:79315410-79315429 None:intergenic 45.0%
CTAGGCATGAAGATGCTCTA+AGG - chr1_2:79315421-79315440 Msa0095360:intron 45.0%
! CGGCTGAGAGCACATAAATT+TGG + chr1_2:79315671-79315690 None:intergenic 45.0%
AACGTTAGCGTGACATGAAG+CGG + chr1_2:79315691-79315710 None:intergenic 45.0%
GAACGAATCAAAGGATGGAC+TGG + chr1_2:79315744-79315763 None:intergenic 45.0%
GGAGAGAAACGACAAGAAAG+GGG + chr1_2:79315779-79315798 None:intergenic 45.0%
GAGGCAAAATCAGTAGTGAC+AGG + chr1_2:79315929-79315948 None:intergenic 45.0%
ACTGAATCAGGATATCTCGG+AGG + chr1_2:79315948-79315967 None:intergenic 45.0%
TGACTGCTGGAATCATGCAT+CGG + chr1_2:79315997-79316016 None:intergenic 45.0%
TGGCCATTAAGCATGAGTCA+CGG + chr1_2:79316289-79316308 None:intergenic 45.0%
GAAACAGTACTTCTGAGCTC+TGG + chr1_2:79316309-79316328 None:intergenic 45.0%
TAACCAATGCTCTGCATAGG+GGG + chr1_2:79316832-79316851 None:intergenic 45.0%
GCTGAGATACTCAAAATCGG+GGG - chr1_2:79316944-79316963 Msa0095360:intron 45.0%
GCAATTTCAGCACTTCCAAG+TGG + chr1_2:79317122-79317141 None:intergenic 45.0%
!!! TATTTTTTTTTTAAATTGTT+AGG + chr1_2:79316482-79316501 None:intergenic 5.0%
!! GAGTGTTGAGCGTGTGAATG+CGG + chr1_2:79308602-79308621 None:intergenic 50.0%
! TGGTTCGGAGTTACGATCTC+AGG - chr1_2:79309291-79309310 Msa0095360:intron 50.0%
GTGCAGGGGAAGTTGCAATA+AGG - chr1_2:79309344-79309363 Msa0095360:intron 50.0%
GAGAAGTGGAATGCCTGGAT+TGG - chr1_2:79309447-79309466 Msa0095360:intron 50.0%
GCATCATTCTCACCCAATCC+AGG + chr1_2:79309463-79309482 None:intergenic 50.0%
ATTGGGTGAGAATGATGCCG+AGG - chr1_2:79309465-79309484 Msa0095360:intron 50.0%
TTGGGTGAGAATGATGCCGA+GGG - chr1_2:79309466-79309485 Msa0095360:intron 50.0%
GGTGGAATTGAGGCTAGTGA+AGG - chr1_2:79309493-79309512 Msa0095360:intron 50.0%
TTCATCTTCTTCGTCGTCGC+TGG - chr1_2:79309531-79309550 Msa0095360:intron 50.0%
!! TAGTGGACAGGTTGATGGTG+AGG - chr1_2:79309558-79309577 Msa0095360:intron 50.0%
!! GCACTGACTTGCTTGTTCTG+AGG - chr1_2:79309940-79309959 Msa0095360:intron 50.0%
TGGTTGGATGTGCCTGCATT+TGG - chr1_2:79309983-79310002 Msa0095360:intron 50.0%
GGTTGGATGTGCCTGCATTT+GGG - chr1_2:79309984-79310003 Msa0095360:intron 50.0%
GTGCCTGCATTTGGGAATGA+TGG - chr1_2:79309992-79310011 Msa0095360:intron 50.0%
AGCGTTATGGTACGAGGATG+AGG + chr1_2:79310772-79310791 None:intergenic 50.0%
TCACTCAGCGTTATGGTACG+AGG + chr1_2:79310778-79310797 None:intergenic 50.0%
TTAGGAGGTAACATGGCCAG+TGG + chr1_2:79310919-79310938 None:intergenic 50.0%
!! CAGAAAGGTGTTGGGTTAGG+AGG + chr1_2:79310934-79310953 None:intergenic 50.0%
CTCCTAACCCAACACCTTTC+TGG - chr1_2:79310932-79310951 Msa0095360:intron 50.0%
!! TGCCAGAAAGGTGTTGGGTT+AGG + chr1_2:79310937-79310956 None:intergenic 50.0%
ATGCATTCAGCATCTCACCC+GGG + chr1_2:79311417-79311436 None:intergenic 50.0%
CATGCATTCAGCATCTCACC+CGG + chr1_2:79311418-79311437 None:intergenic 50.0%
ACGGCATCCTGTCTACACAT+AGG + chr1_2:79311576-79311595 None:intergenic 50.0%
CCACCTACTGAGATGCAACT+TGG + chr1_2:79311890-79311909 None:intergenic 50.0%
CCAAGTTGCATCTCAGTAGG+TGG - chr1_2:79311887-79311906 Msa0095360:intron 50.0%
AGTAGGTGGGGTTGGATACA+TGG - chr1_2:79311901-79311920 Msa0095360:intron 50.0%
CCATCTAGTACAGTGTCCTC+CGG + chr1_2:79312158-79312177 None:intergenic 50.0%
GAGGACACTGTACTAGATGG+TGG - chr1_2:79312158-79312177 Msa0095360:intron 50.0%
AGGATCAGCCTTCTGGATGT+TGG - chr1_2:79312222-79312241 Msa0095360:intron 50.0%
AGGTTCAGCCAACATCCAGA+AGG + chr1_2:79312233-79312252 None:intergenic 50.0%
! CTCTTTTCGTCACTGACCAC+AGG - chr1_2:79312918-79312937 Msa0095360:intron 50.0%
! CAGTTCCGTTGCTGTTGCAT+GGG - chr1_2:79313300-79313319 Msa0095360:intron 50.0%
! CATGTGTTATGCAAGGGTGC+TGG - chr1_2:79313917-79313936 Msa0095360:intron 50.0%
GAAACACAGGTTACTGCTGC+CGG - chr1_2:79314132-79314151 Msa0095360:intron 50.0%
! TTTCCCATGGTGGAGAACTG+AGG + chr1_2:79314772-79314791 None:intergenic 50.0%
! AAGCCTTGTCCCACTAAGTG+GGG + chr1_2:79314944-79314963 None:intergenic 50.0%
! CAAGCCTTGTCCCACTAAGT+GGG + chr1_2:79314945-79314964 None:intergenic 50.0%
GATAGGGTTCCCTAGGTCTT+TGG - chr1_2:79315109-79315128 Msa0095360:intron 50.0%
ACCAAGGGTCCAAAGACCTA+GGG + chr1_2:79315121-79315140 None:intergenic 50.0%
GGTCGTTGACAATTGCCATG+TGG - chr1_2:79315138-79315157 Msa0095360:intron 50.0%
AGGTTCTCGACATCTCGTTG+AGG - chr1_2:79315867-79315886 Msa0095360:intron 50.0%
TCGACATCTCGTTGAGGCTT+AGG - chr1_2:79315873-79315892 Msa0095360:intron 50.0%
GACTGCTGGAATCATGCATC+GGG + chr1_2:79315996-79316015 None:intergenic 50.0%
! CTACTACACTCACTGACTGC+TGG + chr1_2:79316010-79316029 None:intergenic 50.0%
GAAACAGTTCCGAACTGGCT+TGG + chr1_2:79316181-79316200 None:intergenic 50.0%
CTTGCGAAACAGTTCCGAAC+TGG + chr1_2:79316186-79316205 None:intergenic 50.0%
! GATCTTCGCACCTTTGGAGA+TGG - chr1_2:79316860-79316879 Msa0095360:intron 50.0%
!! CGATCTCAGGTTGATGCTGG+TGG - chr1_2:79309304-79309323 Msa0095360:intron 55.0%
!! ATGCTGGTGGTGCTGTTGCT+GGG - chr1_2:79309317-79309336 Msa0095360:intron 55.0%
CTGTTGCTGGGAGTAGTGCA+GGG - chr1_2:79309329-79309348 Msa0095360:intron 55.0%
TGTTGCTGGGAGTAGTGCAG+GGG - chr1_2:79309330-79309349 Msa0095360:intron 55.0%
GGTGAGAGAAGTGGAATGCC+TGG - chr1_2:79309442-79309461 Msa0095360:intron 55.0%
CTCAATTCCACCACGACCCT+CGG + chr1_2:79309485-79309504 None:intergenic 55.0%
!! GCTGGTAGTGGACAGGTTGA+TGG - chr1_2:79309553-79309572 Msa0095360:intron 55.0%
!! AGGTTGATGGTGAGGCTGCT+GGG - chr1_2:79309566-79309585 Msa0095360:intron 55.0%
TGCATTCAGCATCTCACCCG+GGG + chr1_2:79311416-79311435 None:intergenic 55.0%
TGCATCTCAGTAGGTGGGGT+TGG - chr1_2:79311893-79311912 Msa0095360:intron 55.0%
ACTTAGAGGAGACGGCTGAC+CGG - chr1_2:79312136-79312155 Msa0095360:intron 55.0%
CCGGAGGACACTGTACTAGA+TGG - chr1_2:79312155-79312174 Msa0095360:intron 55.0%
!! CCAGACTGGTGTTGGCAACA+AGG + chr1_2:79312865-79312884 None:intergenic 55.0%
CCTTGTTGCCAACACCAGTC+TGG - chr1_2:79312862-79312881 Msa0095360:CDS 55.0%
TGCCAACACCAGTCTGGTAC+CGG - chr1_2:79312868-79312887 Msa0095360:CDS 55.0%
AACCGGTACCAGACTGGTGT+TGG + chr1_2:79312873-79312892 None:intergenic 55.0%
GGTCTATGCCACAGCAGAAC+AGG - chr1_2:79313130-79313149 Msa0095360:intron 55.0%
CCATGCAACAGCAACGGAAC+TGG + chr1_2:79313302-79313321 None:intergenic 55.0%
! CCAGTTCCGTTGCTGTTGCA+TGG - chr1_2:79313299-79313318 Msa0095360:intron 55.0%
ATGGCCTCAGTTCTCCACCA+TGG - chr1_2:79314765-79314784 Msa0095360:CDS 55.0%
TGGCCTCAGTTCTCCACCAT+GGG - chr1_2:79314766-79314785 Msa0095360:CDS 55.0%
ACTAAGTGGGGACTTGGGGT+CGG + chr1_2:79314932-79314951 None:intergenic 55.0%
ACCCCAAGTCCCCACTTAGT+GGG - chr1_2:79314932-79314951 Msa0095360:intron 55.0%
TCCCACTAAGTGGGGACTTG+GGG + chr1_2:79314936-79314955 None:intergenic 55.0%
GTCCCACTAAGTGGGGACTT+GGG + chr1_2:79314937-79314956 None:intergenic 55.0%
TGTCCCACTAAGTGGGGACT+TGG + chr1_2:79314938-79314957 None:intergenic 55.0%
AGTCCCCACTTAGTGGGACA+AGG - chr1_2:79314938-79314957 Msa0095360:intron 55.0%
! CCAAGCCTTGTCCCACTAAG+TGG + chr1_2:79314946-79314965 None:intergenic 55.0%
CCACTTAGTGGGACAAGGCT+TGG - chr1_2:79314943-79314962 Msa0095360:intron 55.0%
TCCCTAGGTCTTTGGACCCT+TGG - chr1_2:79315117-79315136 Msa0095360:intron 55.0%
GACCAAGGGTCCAAAGACCT+AGG + chr1_2:79315122-79315141 None:intergenic 55.0%
!! TGGACTGGCACCAACGAGAA+AGG + chr1_2:79315729-79315748 None:intergenic 55.0%
TTCTGCAAGTGCAGAGCCCT+TGG + chr1_2:79315800-79315819 None:intergenic 55.0%
TGCTCAGAGCTGCTTCTCGT+TGG + chr1_2:79315901-79315920 None:intergenic 55.0%
GAACTGGGACCAAGCCAGTT+CGG - chr1_2:79316169-79316188 Msa0095360:CDS 55.0%
TTGCCCCCTATGCAGAGCAT+TGG - chr1_2:79316826-79316845 Msa0095360:five_prime_UTR 55.0%
GCAGCTGATCTTCGCACCTT+TGG - chr1_2:79316854-79316873 Msa0095360:intron 55.0%
!! GATGCTGGTGGTGCTGTTGC+TGG - chr1_2:79309316-79309335 Msa0095360:intron 60.0%
GCTGTTGCTGGGAGTAGTGC+AGG - chr1_2:79309328-79309347 Msa0095360:intron 60.0%
GAGAATGATGCCGAGGGTCG+TGG - chr1_2:79309472-79309491 Msa0095360:intron 60.0%
AATGATGCCGAGGGTCGTGG+TGG - chr1_2:79309475-79309494 Msa0095360:intron 60.0%
! CGAGGGTCGTGGTGGAATTG+AGG - chr1_2:79309483-79309502 Msa0095360:intron 60.0%
TCTTCTTCGTCGTCGCTGGC+TGG - chr1_2:79309535-79309554 Msa0095360:intron 60.0%
!! CAGGTTGATGGTGAGGCTGC+TGG - chr1_2:79309565-79309584 Msa0095360:intron 60.0%
GATGGTGAGGCTGCTGGGAA+TGG - chr1_2:79309571-79309590 Msa0095360:intron 60.0%
GACCCCAAGTCCCCACTTAG+TGG - chr1_2:79314931-79314950 Msa0095360:intron 60.0%
GCATCGGGATATCCCTCCAC+TGG + chr1_2:79315981-79316000 None:intergenic 60.0%
! TCGTCGTCGCTGGCTGGTAG+TGG - chr1_2:79309541-79309560 Msa0095360:intron 65.0%
!! GTCGCTGGCTGGTAGTGGAC+AGG - chr1_2:79309546-79309565 Msa0095360:intron 65.0%
TAGAGGAGACGGCTGACCGG+AGG - chr1_2:79312139-79312158 Msa0095360:intron 65.0%
GGGACTTGGGGTCGGCTACA+TGG + chr1_2:79314924-79314943 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 79308548 79317197 79308548 ID=Msa0095360;Name=Msa0095360
chr1_2 mRNA 79308548 79317197 79308548 ID=Msa0095360-mRNA-1;Parent=Msa0095360;Name=Msa0095360-mRNA-1;_AED=0.11;_eAED=0.11;_QI=366|1|1|1|0.66|0.6|10|284|481
chr1_2 exon 79308548 79308937 79308548 ID=Msa0095360-mRNA-1:exon:28120;Parent=Msa0095360-mRNA-1
chr1_2 exon 79311501 79311604 79311501 ID=Msa0095360-mRNA-1:exon:28119;Parent=Msa0095360-mRNA-1
chr1_2 exon 79312594 79312671 79312594 ID=Msa0095360-mRNA-1:exon:28118;Parent=Msa0095360-mRNA-1
chr1_2 exon 79312765 79312929 79312765 ID=Msa0095360-mRNA-1:exon:28117;Parent=Msa0095360-mRNA-1
chr1_2 exon 79313014 79313102 79313014 ID=Msa0095360-mRNA-1:exon:28116;Parent=Msa0095360-mRNA-1
chr1_2 exon 79314763 79314928 79314763 ID=Msa0095360-mRNA-1:exon:28115;Parent=Msa0095360-mRNA-1
chr1_2 exon 79315046 79315122 79315046 ID=Msa0095360-mRNA-1:exon:28114;Parent=Msa0095360-mRNA-1
chr1_2 exon 79316024 79316737 79316024 ID=Msa0095360-mRNA-1:exon:28113;Parent=Msa0095360-mRNA-1
chr1_2 exon 79316767 79316860 79316767 ID=Msa0095360-mRNA-1:exon:28112;Parent=Msa0095360-mRNA-1
chr1_2 exon 79316979 79317197 79316979 ID=Msa0095360-mRNA-1:exon:28111;Parent=Msa0095360-mRNA-1
chr1_2 five_prime_UTR 79316979 79317197 79316979 ID=Msa0095360-mRNA-1:five_prime_utr;Parent=Msa0095360-mRNA-1
chr1_2 five_prime_UTR 79316767 79316860 79316767 ID=Msa0095360-mRNA-1:five_prime_utr;Parent=Msa0095360-mRNA-1
chr1_2 five_prime_UTR 79316685 79316737 79316685 ID=Msa0095360-mRNA-1:five_prime_utr;Parent=Msa0095360-mRNA-1
chr1_2 CDS 79316024 79316684 79316024 ID=Msa0095360-mRNA-1:cds;Parent=Msa0095360-mRNA-1
chr1_2 CDS 79315046 79315122 79315046 ID=Msa0095360-mRNA-1:cds;Parent=Msa0095360-mRNA-1
chr1_2 CDS 79314763 79314928 79314763 ID=Msa0095360-mRNA-1:cds;Parent=Msa0095360-mRNA-1
chr1_2 CDS 79313014 79313102 79313014 ID=Msa0095360-mRNA-1:cds;Parent=Msa0095360-mRNA-1
chr1_2 CDS 79312765 79312929 79312765 ID=Msa0095360-mRNA-1:cds;Parent=Msa0095360-mRNA-1
chr1_2 CDS 79312594 79312671 79312594 ID=Msa0095360-mRNA-1:cds;Parent=Msa0095360-mRNA-1
chr1_2 CDS 79311501 79311604 79311501 ID=Msa0095360-mRNA-1:cds;Parent=Msa0095360-mRNA-1
chr1_2 CDS 79308832 79308937 79308832 ID=Msa0095360-mRNA-1:cds;Parent=Msa0095360-mRNA-1
chr1_2 three_prime_UTR 79308548 79308831 79308548 ID=Msa0095360-mRNA-1:three_prime_utr;Parent=Msa0095360-mRNA-1
Gene Sequence

>Msa0095360

ATGGAAACTTTGGGTGGTAATTCATCATCATCACCATCATTATCATCAGCATCGTCGTCATCATCTTTTGGAGGGATTAATACTGATGATAACAATGTTGGTGTAACTTGGTATGGAATGAGGTTACCTGTTAACCCCTTTTTGTCACCGATTTCGTTTTTGTTGGATTATTCTGGAATTTTGCGTTCGAGTAATGATTCTGAGGGTATGATTGTCAACAACGGAGTTTCTGGTTCGGAGTTACGATCTCAGGTTGATGCTGGTGGTGCTGTTGCTGGGAGTAGTGCAGGGGAAGTTGCAATAAGGATTATTGGAGCCGGAGAGAATATTCATAATCAGGTTGGGGAAGTAGGTTATGATGATTGTGGTGAGGAGCTTATTGGTGAGAGAAGTGGAATGCCTGGATTGGGTGAGAATGATGCCGAGGGTCGTGGTGGAATTGAGGCTAGTGAAGGGGTTCCTCTTGTGTCTTCATCTTCTTCGTCGTCGCTGGCTGGTAGTGGACAGGTTGATGGTGAGGCTGCTGGGAATGGAACAGAAAATAACAGGGATTCGTCTTCTCATCAGAGATATGATATTCAGCTGGTTGCCAAGTGGATCGAGCAGATTCTTCCTTTCTCGCTTTTGTTGTTGGTTGTTTTCATTCGACAGCATTTACAAGGTTTCTTTGTCACAATTTGGATAGCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTTTGAAGGGAGATAGGAAAGTCTCTTTACTTGCTGGTATCGCTTTTGCTTTCATTCTTCATGTGATATGCATTTACTGGTGGTATCGAAATGATGATATTTTATATCCACTGGCCATGTTACCTCCTAACCCAACACCTTTCTGGCATGCAATATTCACGATCTTGGTCAATGATATATTGATGCGGCAAGTTGCAATGGCTTTTAAGTGTATCCTTCTTATATATTACAAAAAGGGGAAAGGTCATAATTTCCGTCGACAGGCTCAAATGTTAACTCTTGTTGAGTACACGCTGCTGTTGTATCGTGCCTTGTTGCCAACACCAGTCTGGTACCGGTTTTTCTTGAATAGGGAATATGGAAGTCTCTTTTCGTCACTGACCACAGGGTTGTATTTAACTTTCAAGCTAACATCTGTGGTTGAGAAGGTCCAATGCTTTATTTCTGCCTTGAAAGCATTATCAAGAAAGGAAGTTCATTACGGGGTCTATGCCACAGCAGAACAGGTTACTGCTGCCGGTGACCTATGTGCTATATGCCAAGAGAAGATGCATTCCCCTATCTTGTTGCGCTGCAAACACATTTTCTGCGAAGATTGTGTTTCTGAGTGGTTTGAGAGAGAAAGGACTTGCCCCCTATGCAGAGCATTGGTTAAAGCAGCTGATCTTCGCACCTTTGGAGATGGATCAACAAGTTTGTTCTTCCAGTTGTTTTAA

Protein sequence

>Msa0095360

METLGGNSSSSPSLSSASSSSSFGGINTDDNNVGVTWYGMRLPVNPFLSPISFLLDYSGILRSSNDSEGMIVNNGVSGSELRSQVDAGGAVAGSSAGEVAIRIIGAGENIHNQVGEVGYDDCGEELIGERSGMPGLGENDAEGRGGIEASEGVPLVSSSSSSSLAGSGQVDGEAAGNGTENNRDSSSHQRYDIQLVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNEIVKKQTALKGDRKVSLLAGIAFAFILHVICIYWWYRNDDILYPLAMLPPNPTPFWHAIFTILVNDILMRQVAMAFKCILLIYYKKGKGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSVVEKVQCFISALKALSRKEVHYGVYATAEQVTAAGDLCAICQEKMHSPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRTFGDGSTSLFFQLF*