AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0095770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095770 MtrunA17_Chr5g0428621 98.337 481 8 0 1 481 1 481 0.0 975
Msa0095770 MtrunA17_Chr7g0245321 62.222 450 127 8 38 481 14 426 0.0 516
Msa0095770 MtrunA17_Chr3g0128531 72.297 296 81 1 186 480 57 352 4.97e-154 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0095770 AT5G01960.1 62.443 442 121 9 45 481 25 426 0.0 537

Find 153 sgRNAs with CRISPR-Local

Find 579 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAACTAATTGCTAATTT+TGG 0.071152 1_3:+1127368 None:intergenic
CTCCTAACCCAACACCTTTC+TGG 0.136413 1_3:-1125369 Msa0095770:CDS
TATACAAACTTCAAAGAAAT+TGG 0.149391 1_3:+1119245 None:intergenic
AACTCATGATGTACAAATTA+AGG 0.154216 1_3:-1119382 Msa0095770:three_prime_UTR
ATTGTCAACAACGGAGTTTC+TGG 0.171090 1_3:-1127032 Msa0095770:CDS
AAGGAAGGAATTATGGAAAT+TGG 0.173609 1_3:+1127585 None:intergenic
GATGCTGGTGGTGCTGTTGC+TGG 0.216559 1_3:-1126987 Msa0095770:CDS
CCTTCTTATATATTACAAAA+AGG 0.220636 1_3:-1123618 Msa0095770:CDS
CAGGTTTCTTTGTCACAATT+TGG 0.224870 1_3:-1125682 Msa0095770:CDS
AAGTGGAAGATCAAAGAAAT+AGG 0.254643 1_3:-1127346 Msa0095770:intron
AAACGAAATCGGTGACAAAA+AGG 0.259302 1_3:+1127106 None:intergenic
AGCGATTAAGGAAGGAATTA+TGG 0.268224 1_3:+1127578 None:intergenic
GCTTATGGATTAAGCGATTA+AGG 0.274026 1_3:+1127566 None:intergenic
ATAGGTTACCTGAGAGCTTA+TGG 0.282402 1_3:+1127551 None:intergenic
GAAGTTGCAATAAGGATTAT+TGG 0.287712 1_3:-1126951 Msa0095770:CDS
TTCATGTGATATGCATTTAC+TGG 0.295179 1_3:-1125435 Msa0095770:CDS
AGAGTGAAGAATTGAGGATT+AGG 0.296016 1_3:-1127291 Msa0095770:five_prime_UTR
AGGAAGGAATTATGGAAATT+GGG 0.305560 1_3:+1127586 None:intergenic
GCATCGTCGTCATCATCTTT+TGG 0.311148 1_3:-1127194 Msa0095770:CDS
GAGTGAAGAATTGAGGATTA+GGG 0.329208 1_3:-1127290 Msa0095770:five_prime_UTR
TGTTTGCAGCGCAACAAGAT+AGG 0.343260 1_3:+1122107 None:intergenic
GCAGCTGATCTTCGCACCTT+TGG 0.351910 1_3:-1119444 Msa0095770:CDS
GGAATGGAACAGAAAATAAC+AGG 0.357993 1_3:-1126716 Msa0095770:CDS
CTTTCTTGATAATGCTTTCA+AGG 0.360532 1_3:+1123208 None:intergenic
TTCATCTTCTTCGTCGTCGC+TGG 0.362832 1_3:-1126772 Msa0095770:CDS
GATGATGAAAAGTCAGAATC+AGG 0.365247 1_3:+1127655 None:intergenic
GATTGTGGTGAGGAGCTTAT+TGG 0.382139 1_3:-1126882 Msa0095770:CDS
GCTGTTGCTGGGAGTAGTGC+AGG 0.386572 1_3:-1126975 Msa0095770:CDS
CGGAGAGAATATTCATAATC+AGG 0.390914 1_3:-1126925 Msa0095770:CDS
ACTCATGATGTACAAATTAA+GGG 0.395875 1_3:-1119381 Msa0095770:three_prime_UTR
TCAAGAAAGGAAGTTCATTA+CGG 0.399518 1_3:-1123194 Msa0095770:CDS
CAGGTTGATGGTGAGGCTGC+TGG 0.403813 1_3:-1126738 Msa0095770:CDS
AGAATATTCATAATCAGGTT+GGG 0.404440 1_3:-1126920 Msa0095770:CDS
CAAGAAAGGAAGTTCATTAC+GGG 0.406319 1_3:-1123193 Msa0095770:CDS
TGTGTTAAAGATGGAAACTT+TGG 0.413389 1_3:-1127252 Msa0095770:exon
TAAGAAGCAGACAGCTTTGA+AGG 0.417319 1_3:-1125624 Msa0095770:intron
CATGAGTTGATTAAAACAAC+TGG 0.418322 1_3:+1119397 None:intergenic
ATGCTGGTGGTGCTGTTGCT+GGG 0.418694 1_3:-1126986 Msa0095770:CDS
GTGCAGGGGAAGTTGCAATA+AGG 0.423075 1_3:-1126959 Msa0095770:CDS
TTGCTGAGATACTCAAAATC+GGG 0.423104 1_3:-1119356 Msa0095770:three_prime_UTR
CATAATCAGGTTGGGGAAGT+AGG 0.423930 1_3:-1126912 Msa0095770:CDS
AGGAAAGTCTCTTTACTTGC+TGG 0.427377 1_3:-1125478 Msa0095770:CDS
TGGTTCGGAGTTACGATCTC+AGG 0.429413 1_3:-1127012 Msa0095770:CDS
GCATGCAATATTCACGATCT+TGG 0.434284 1_3:-1125347 Msa0095770:CDS
TATTCAGGTTTGAGAGAGAA+AGG 0.435355 1_3:-1119497 Msa0095770:intron
GGTCTATGCCACAGCAGAAC+AGG 0.437050 1_3:-1123171 Msa0095770:intron
CGCTTAATCCATAAGCTCTC+AGG 0.441894 1_3:-1127559 Msa0095770:intron
TCTTCTTCGTCGTCGCTGGC+TGG 0.443041 1_3:-1126768 Msa0095770:CDS
ATACAAACTTCAAAGAAATT+GGG 0.447841 1_3:+1119246 None:intergenic
ATTAGCAATTAGTTGAAAAG+TGG 0.448955 1_3:-1127363 Msa0095770:five_prime_UTR
GCTGGTAGTGGACAGGTTGA+TGG 0.451925 1_3:-1126750 Msa0095770:CDS
TTTGCTGAGATACTCAAAAT+CGG 0.452012 1_3:-1119357 Msa0095770:three_prime_UTR
GAGAATGATGCCGAGGGTCG+TGG 0.454511 1_3:-1126831 Msa0095770:CDS
GATGGTGAGGCTGCTGGGAA+TGG 0.455118 1_3:-1126732 Msa0095770:CDS
TCGTCGTCGCTGGCTGGTAG+TGG 0.456677 1_3:-1126762 Msa0095770:CDS
ACCAACAACAAAAGCGAGAA+AGG 0.457541 1_3:+1126630 None:intergenic
GATCTTCGCACCTTTGGAGA+TGG 0.465492 1_3:-1119438 Msa0095770:CDS
TGCCAGAAAGGTGTTGGGTT+AGG 0.468923 1_3:+1125367 None:intergenic
GGAAGGAATTATGGAAATTG+GGG 0.469339 1_3:+1127587 None:intergenic
TTCATTCGACAGCATTTACA+AGG 0.471120 1_3:-1126603 Msa0095770:intron
GAGAATATTCATAATCAGGT+TGG 0.471723 1_3:-1126921 Msa0095770:CDS
TTTAACCAATGCTCTGCATA+GGG 0.474317 1_3:+1119467 None:intergenic
AGTGGAAGATCAAAGAAATA+GGG 0.481606 1_3:-1127345 Msa0095770:intron
GTGTTAAAGATGGAAACTTT+GGG 0.485192 1_3:-1127251 Msa0095770:exon
CAACAACGGAGTTTCTGGTT+CGG 0.487455 1_3:-1127027 Msa0095770:CDS
ACACGCTCAACACTCTCAAA+AGG 0.487468 1_3:-1127697 Msa0095770:five_prime_UTR
GTCGCTGGCTGGTAGTGGAC+AGG 0.489319 1_3:-1126757 Msa0095770:CDS
GAATCAGGGAGCTGAAAACT+TGG 0.490952 1_3:+1127670 None:intergenic
CTTGAAAGCATTATCAAGAA+AGG 0.491166 1_3:-1123207 Msa0095770:CDS
TAGGGGAATGCATCTTCTCT+TGG 0.502312 1_3:+1122126 None:intergenic
CTCAATTCCACCACGACCCT+CGG 0.503303 1_3:+1126821 None:intergenic
TCTATTATATGAGGAATATG+AGG 0.505165 1_3:+1119321 None:intergenic
AATGTTGGTGTAACTTGGTA+TGG 0.506979 1_3:-1127149 Msa0095770:CDS
AGGTTGATGGTGAGGCTGCT+GGG 0.510435 1_3:-1126737 Msa0095770:CDS
ATCATACTATCTATTATATG+AGG 0.510800 1_3:+1119312 None:intergenic
CCTTGTTGCCAACACCAGTC+TGG 0.511066 1_3:-1123439 Msa0095770:CDS
CTTTAACCAATGCTCTGCAT+AGG 0.512609 1_3:+1119466 None:intergenic
TGCCAACACCAGTCTGGTAC+CGG 0.512850 1_3:-1123433 Msa0095770:CDS
ATTGCATGCCAGAAAGGTGT+TGG 0.514467 1_3:+1125361 None:intergenic
GTGAATATTGCATGCCAGAA+AGG 0.515806 1_3:+1125355 None:intergenic
ATGAGGAATATGAGGTTAGC+GGG 0.516794 1_3:+1119329 None:intergenic
GAGAAGTGGAATGCCTGGAT+TGG 0.516962 1_3:-1126856 Msa0095770:CDS
AGGTCATAATTTCCGTCGAC+AGG 0.520503 1_3:-1123591 Msa0095770:intron
TTGCATGCCAGAAAGGTGTT+GGG 0.523282 1_3:+1125362 None:intergenic
GTTTGCAGCGCAACAAGATA+GGG 0.523423 1_3:+1122108 None:intergenic
GCATCATTCTCACCCAATCC+AGG 0.524005 1_3:+1126843 None:intergenic
ATTAATTAAGTTGTTCCACT+TGG 0.525389 1_3:-1119194 Msa0095770:three_prime_UTR
AGGGTTAGAGTGAAGAATTG+AGG 0.526874 1_3:-1127297 Msa0095770:five_prime_UTR
GAGCTTATTGGTGAGAGAAG+TGG 0.528069 1_3:-1126870 Msa0095770:CDS
CAGAAAGGTGTTGGGTTAGG+AGG 0.529451 1_3:+1125370 None:intergenic
CGAGGGTCGTGGTGGAATTG+AGG 0.530269 1_3:-1126820 Msa0095770:CDS
TTACGATCTCAGGTTGATGC+TGG 0.530975 1_3:-1127002 Msa0095770:CDS
CTGATTATGAATATTCTCTC+CGG 0.531233 1_3:+1126926 None:intergenic
CTGTTGCTGGGAGTAGTGCA+GGG 0.533694 1_3:-1126974 Msa0095770:CDS
AGAAGTGGAATGCCTGGATT+GGG 0.538975 1_3:-1126855 Msa0095770:CDS
ATATTCACGATCTTGGTCAA+TGG 0.547880 1_3:-1125340 Msa0095770:intron
CCAGACTGGTGTTGGCAACA+AGG 0.550659 1_3:+1123439 None:intergenic
GCTAACATCTGTGGTTGAGA+AGG 0.553972 1_3:-1123342 Msa0095770:intron
AACCGGTACCAGACTGGTGT+TGG 0.555615 1_3:+1123431 None:intergenic
ATTGATGCGGCAAGTTGCAA+TGG 0.559389 1_3:-1123654 Msa0095770:CDS
GCAATAAGGATTATTGGAGC+CGG 0.561386 1_3:-1126945 Msa0095770:CDS
GGTGAGAGAAGTGGAATGCC+TGG 0.561452 1_3:-1126861 Msa0095770:CDS
GTGTAACTTGGTATGGAATG+AGG 0.561851 1_3:-1127142 Msa0095770:CDS
CGTTCGAGTAATGATTCTGA+GGG 0.563268 1_3:-1127059 Msa0095770:CDS
AACTTTCAAGCTAACATCTG+TGG 0.566297 1_3:-1123351 Msa0095770:CDS
ATAACAATGTTGGTGTAACT+TGG 0.566832 1_3:-1127154 Msa0095770:CDS
GAATATTCATAATCAGGTTG+GGG 0.568125 1_3:-1126919 Msa0095770:CDS
TCAAGGCAGAAATAAAGCAT+TGG 0.568202 1_3:+1123225 None:intergenic
TATGAGGAATATGAGGTTAG+CGG 0.572912 1_3:+1119328 None:intergenic
ATGGATTAAGCGATTAAGGA+AGG 0.573096 1_3:+1127570 None:intergenic
TAACCAATGCTCTGCATAGG+GGG 0.573244 1_3:+1119469 None:intergenic
GCGTTCGAGTAATGATTCTG+AGG 0.573260 1_3:-1127060 Msa0095770:CDS
AAGAATCTGCTCGATCCACT+TGG 0.579271 1_3:+1126653 None:intergenic
GAAACACAGGTTACTGCTGC+CGG 0.586657 1_3:-1122167 Msa0095770:intron
TCAGAGATATGATATTCAGC+TGG 0.589785 1_3:-1126679 Msa0095770:CDS
GTGGAATTGAGGCTAGTGAA+GGG 0.589870 1_3:-1126809 Msa0095770:CDS
TGCTGAGATACTCAAAATCG+GGG 0.592550 1_3:-1119355 Msa0095770:three_prime_UTR
GCATATAGCACATAGGTCAC+CGG 0.609774 1_3:+1122148 None:intergenic
GAAGAAGATGAAGACACAAG+AGG 0.611695 1_3:+1126783 None:intergenic
AATTATTACCTGTTCTGCTG+TGG 0.619122 1_3:+1123163 None:intergenic
CGATCTCAGGTTGATGCTGG+TGG 0.621120 1_3:-1126999 Msa0095770:CDS
AATTTGAAGTGAATTAACAA+TGG 0.624039 1_3:+1127631 None:intergenic
GGTGGAATTGAGGCTAGTGA+AGG 0.624331 1_3:-1126810 Msa0095770:CDS
ATGATGAAAAGTCAGAATCA+GGG 0.624666 1_3:+1127656 None:intergenic
TCTCTTGGCATATAGCACAT+AGG 0.625613 1_3:+1122141 None:intergenic
GACTATCAGATATATTGATG+CGG 0.630026 1_3:-1123667 Msa0095770:intron
TAGTGGACAGGTTGATGGTG+AGG 0.631621 1_3:-1126745 Msa0095770:CDS
TGTTGGGTTAGGAGGTAACA+TGG 0.635457 1_3:+1125378 None:intergenic
ATGTGATATGCATTTACTGG+TGG 0.637599 1_3:-1125432 Msa0095770:CDS
TTTGCAGCGCAACAAGATAG+GGG 0.638343 1_3:+1122109 None:intergenic
ACTTGTTGATCCATCTCCAA+AGG 0.640923 1_3:+1119428 None:intergenic
AATACTGATGATAACAATGT+TGG 0.646042 1_3:-1127164 Msa0095770:CDS
AAGTGTTAATCACCTGTCGA+CGG 0.651807 1_3:+1123579 None:intergenic
TTAGGAGGTAACATGGCCAG+TGG 0.655245 1_3:+1125385 None:intergenic
GCAATTTCAGCACTTCCAAG+TGG 0.655394 1_3:+1119179 None:intergenic
GCGAAGATTGTGTTTCTGAG+TGG 0.661411 1_3:-1122076 Msa0095770:intron
GACGATGCTGATGATAATGA+TGG 0.665344 1_3:+1127209 None:intergenic
TGGAATTGAGGCTAGTGAAG+GGG 0.668643 1_3:-1126808 Msa0095770:CDS
TTAACCAATGCTCTGCATAG+GGG 0.669529 1_3:+1119468 None:intergenic
AGGTTATGATGATTGTGGTG+AGG 0.674430 1_3:-1126892 Msa0095770:CDS
GAGTGTTGAGCGTGTGAATG+CGG 0.674483 1_3:+1127705 None:intergenic
AATGATGCCGAGGGTCGTGG+TGG 0.676790 1_3:-1126828 Msa0095770:CDS
TGTTGCTGGGAGTAGTGCAG+GGG 0.681680 1_3:-1126973 Msa0095770:CDS
ATATTCAGCTGGTTGCCAAG+TGG 0.681905 1_3:-1126668 Msa0095770:CDS
TTGGGTGAGAATGATGCCGA+GGG 0.685926 1_3:-1126837 Msa0095770:CDS
GCTGAGATACTCAAAATCGG+GGG 0.694163 1_3:-1119354 Msa0095770:three_prime_UTR
ATTGGGTGAGAATGATGCCG+AGG 0.696716 1_3:-1126838 Msa0095770:CDS
GAAGTAGGTTATGATGATTG+TGG 0.698058 1_3:-1126897 Msa0095770:CDS
TTAAAGATGGAAACTTTGGG+TGG 0.712597 1_3:-1127248 Msa0095770:exon
GAAAGTTAAATACAACCCTG+TGG 0.717765 1_3:+1123367 None:intergenic
GAATGGAACAGAAAATAACA+GGG 0.719617 1_3:-1126715 Msa0095770:CDS
AAGAAAGGAAGTTCATTACG+GGG 0.731505 1_3:-1123192 Msa0095770:CDS
GAGGGTATGATTGTCAACAA+CGG 0.747863 1_3:-1127041 Msa0095770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAAAAAAAAAAATTA+GGG + chr1_3:1119479-1119498 None:intergenic 0.0%
!! ATATTAAAAAAAAAAAAATT+AGG + chr1_3:1119480-1119499 None:intergenic 0.0%
!!! TTTAAGAATAGAAATTTTAA+AGG + chr1_3:1121306-1121325 None:intergenic 10.0%
!! ATGAAATAGTAAATAATTAA+AGG - chr1_3:1125181-1125200 Msa0095770:intron 10.0%
!!! AATAATTATTATTTTGTTTG+TGG - chr1_3:1125309-1125328 Msa0095770:intron 10.0%
!!! ATAATTATTATTTTGTTTGT+GGG - chr1_3:1125310-1125329 Msa0095770:intron 10.0%
!!! AAACTATTTTTCTAAAATAA+TGG - chr1_3:1126790-1126809 Msa0095770:CDS 10.0%
!! TAGAATTGAAAAAAATTGAA+GGG + chr1_3:1119368-1119387 None:intergenic 15.0%
!! ATAGAATTGAAAAAAATTGA+AGG + chr1_3:1119369-1119388 None:intergenic 15.0%
!! AAATAAAGGAAAATTCAAAA+TGG + chr1_3:1120407-1120426 None:intergenic 15.0%
!!! TTTGTATTTTCTTGATATTT+GGG + chr1_3:1120460-1120479 None:intergenic 15.0%
!!! AATATACTGTATTTTTATCT+TGG - chr1_3:1123096-1123115 Msa0095770:intron 15.0%
!! CTTCTTATATATTACAAAAA+GGG - chr1_3:1123263-1123282 Msa0095770:intron 15.0%
!! TTCTTATATATTACAAAAAG+GGG - chr1_3:1123264-1123283 Msa0095770:intron 15.0%
!! TTAATATTATAGAAATCGAA+TGG + chr1_3:1123785-1123804 None:intergenic 15.0%
!!! TTTTATAGTTACACAAATTA+TGG - chr1_3:1124187-1124206 Msa0095770:intron 15.0%
!!! TAAATAATTAAAGGTATGAT+AGG - chr1_3:1125190-1125209 Msa0095770:intron 15.0%
!! TTAGAAGTAATAAAATTGAT+CGG - chr1_3:1125232-1125251 Msa0095770:intron 15.0%
!! ATGTATAATAAGCAAATATA+TGG + chr1_3:1125377-1125396 None:intergenic 15.0%
!! ATATTTGCTTATTATACATT+TGG - chr1_3:1125378-1125397 Msa0095770:CDS 15.0%
!! GTAATCATATTAAGTATTAA+CGG - chr1_3:1125611-1125630 Msa0095770:intron 15.0%
!! TTTAATATCAAATGTAAGAA+TGG - chr1_3:1125655-1125674 Msa0095770:CDS 15.0%
!! AATTCTTAAATTAAGATTCT+TGG - chr1_3:1125937-1125956 Msa0095770:intron 15.0%
!!! GTTTTTAAGCAAAATAAATT+GGG + chr1_3:1126144-1126163 None:intergenic 15.0%
!!! AGTTTTTAAGCAAAATAAAT+TGG + chr1_3:1126145-1126164 None:intergenic 15.0%
!!! TATTTCCAGTTTTAATTAAA+TGG + chr1_3:1126177-1126196 None:intergenic 15.0%
!!! ATTTTTCTAAAATAATGGTT+TGG - chr1_3:1126795-1126814 Msa0095770:CDS 15.0%
!! TCCAAATTTCTTATAAAAAT+AGG + chr1_3:1127726-1127745 None:intergenic 15.0%
!!! TTTTATAAGAAATTTGGATT+TGG - chr1_3:1127728-1127747 Msa0095770:five_prime_UTR 15.0%
!!! AATTTGAAGTGAATTAACAA+TGG + chr1_3:1119252-1119271 None:intergenic 20.0%
!!! TTCAACTAATTGCTAATTTT+GGG + chr1_3:1119514-1119533 None:intergenic 20.0%
!!! TTTCAACTAATTGCTAATTT+TGG + chr1_3:1119515-1119534 None:intergenic 20.0%
!!! TTTTTAGTTTGTGTTAAAGA+TGG - chr1_3:1119619-1119638 Msa0095770:intron 20.0%
!! TATGATCATTATGATCATAT+TGG + chr1_3:1120383-1120402 None:intergenic 20.0%
!! AACAATGGAAAAGTAAATAA+AGG + chr1_3:1120421-1120440 None:intergenic 20.0%
!!! CTTTGTATTTTCTTGATATT+TGG + chr1_3:1120461-1120480 None:intergenic 20.0%
!!! GAATAGAAATTTTAAAGGTT+TGG + chr1_3:1121301-1121320 None:intergenic 20.0%
!!! TGAAATATGTTTTATTTTGC+AGG - chr1_3:1121374-1121393 Msa0095770:intron 20.0%
!!! GAAATATGTTTTATTTTGCA+GGG - chr1_3:1121375-1121394 Msa0095770:intron 20.0%
!! TCCAAGTTTAATTATCAATT+GGG - chr1_3:1122186-1122205 Msa0095770:intron 20.0%
!!! TTTTTTTAAAGATGTTGTGA+AGG + chr1_3:1122397-1122416 None:intergenic 20.0%
!!! TCAAAAACCTATGTTTTTTA+AGG + chr1_3:1122832-1122851 None:intergenic 20.0%
!! CTATTAGAATCAACTAAAAA+AGG - chr1_3:1122966-1122985 Msa0095770:intron 20.0%
!! AATACCAACAAAAATTAGAA+TGG + chr1_3:1123175-1123194 None:intergenic 20.0%
!! ATATCTGATAGTCAATATAA+TGG + chr1_3:1123206-1123225 None:intergenic 20.0%
!!! CCTTTTTGTAATATATAAGA+AGG + chr1_3:1123265-1123284 None:intergenic 20.0%
!! CCTTCTTATATATTACAAAA+AGG - chr1_3:1123262-1123281 Msa0095770:intron 20.0%
!! GATATATTTATATACACTGT+TGG + chr1_3:1123763-1123782 None:intergenic 20.0%
!! TATTATCCTCAAAATTAGAT+AGG - chr1_3:1124395-1124414 Msa0095770:intron 20.0%
!!! TATTTTCCTATCTAATTTTG+AGG + chr1_3:1124404-1124423 None:intergenic 20.0%
!!! AATTTTATGTATTGAAACAC+AGG - chr1_3:1124700-1124719 Msa0095770:intron 20.0%
!!! CCTTTTTAGTAATTGTTTTA+AGG + chr1_3:1125280-1125299 None:intergenic 20.0%
!! CCTTAAAACAATTACTAAAA+AGG - chr1_3:1125277-1125296 Msa0095770:intron 20.0%
!! TTTGGATATTTATTTATGCT+TGG - chr1_3:1125396-1125415 Msa0095770:CDS 20.0%
!! ATTACATATTATGCAAAGAA+AGG + chr1_3:1125596-1125615 None:intergenic 20.0%
!! TTTAATATTCATAGCAAACA+TGG - chr1_3:1125906-1125925 Msa0095770:intron 20.0%
!!! TTTGTTAGAAGGATTATTTT+CGG + chr1_3:1125966-1125985 None:intergenic 20.0%
!!! AATCAAATTTTAATAGCTTG+AGG + chr1_3:1126912-1126931 None:intergenic 20.0%
!! ATCATACTATCTATTATATG+AGG + chr1_3:1127571-1127590 None:intergenic 20.0%
!! ATACAAACTTCAAAGAAATT+GGG + chr1_3:1127637-1127656 None:intergenic 20.0%
!! TATACAAACTTCAAAGAAAT+TGG + chr1_3:1127638-1127657 None:intergenic 20.0%
!!! GCCTATTTTTATAAGAAATT+TGG - chr1_3:1127722-1127741 Msa0095770:five_prime_UTR 20.0%
! ATTGGGGAAAATGAAAAATA+GGG + chr1_3:1119280-1119299 None:intergenic 25.0%
! AATTGGGGAAAATGAAAAAT+AGG + chr1_3:1119281-1119300 None:intergenic 25.0%
!! TCAACTAATTGCTAATTTTG+GGG + chr1_3:1119513-1119532 None:intergenic 25.0%
! ATTAGCAATTAGTTGAAAAG+TGG - chr1_3:1119517-1119536 Msa0095770:intron 25.0%
! AATACTGATGATAACAATGT+TGG - chr1_3:1119716-1119735 Msa0095770:intron 25.0%
! TAATCCAACAAAAACGAAAT+CGG + chr1_3:1119788-1119807 None:intergenic 25.0%
! AGAATATTCATAATCAGGTT+GGG - chr1_3:1119960-1119979 Msa0095770:intron 25.0%
!! TTTTCTTGATATTTGGGAAA+TGG + chr1_3:1120454-1120473 None:intergenic 25.0%
!!! CAAAGTTGTTTTTGATAACT+TGG - chr1_3:1120476-1120495 Msa0095770:intron 25.0%
!! TCATCATGTATAAGTTTGTT+TGG - chr1_3:1120630-1120649 Msa0095770:intron 25.0%
! TCAATGAAAAACATTCAACA+AGG + chr1_3:1120672-1120691 None:intergenic 25.0%
!! AAGTTGCAATTTTCTTACTA+AGG + chr1_3:1120886-1120905 None:intergenic 25.0%
! TAAGGTAAAAATGAATCTTG+TGG - chr1_3:1120915-1120934 Msa0095770:intron 25.0%
!! ATTATTTTCTCCACATTATC+TGG - chr1_3:1121155-1121174 Msa0095770:intron 25.0%
!! TGATGATATTTTATATCCAC+TGG - chr1_3:1121479-1121498 Msa0095770:intron 25.0%
! TTTGTTTGTTCTACTTTACA+TGG - chr1_3:1121623-1121642 Msa0095770:intron 25.0%
!!! TGTACAATTTTTGCTTTGTT+TGG - chr1_3:1121668-1121687 Msa0095770:intron 25.0%
!! AACTTGGAGAATACATTTTA+CGG + chr1_3:1122174-1122193 None:intergenic 25.0%
! CTCCAAGTTTAATTATCAAT+TGG - chr1_3:1122185-1122204 Msa0095770:intron 25.0%
!! TCCCAATTGATAATTAAACT+TGG + chr1_3:1122190-1122209 None:intergenic 25.0%
! TTAACTTTATCCTCAAACAA+TGG + chr1_3:1122225-1122244 None:intergenic 25.0%
! TTTACACGTCTAAGAAAAAT+TGG - chr1_3:1122297-1122316 Msa0095770:intron 25.0%
! TTACACGTCTAAGAAAAATT+GGG - chr1_3:1122298-1122317 Msa0095770:intron 25.0%
! ATATTATTTCACATTGGCAA+TGG - chr1_3:1122334-1122353 Msa0095770:intron 25.0%
! GAAAAAGATTTAGAAGTCAA+TGG + chr1_3:1122536-1122555 None:intergenic 25.0%
! ACAAACATTGAAGCAAATAA+GGG + chr1_3:1122605-1122624 None:intergenic 25.0%
! ATTAGTATTCCCTCTTAAAT+TGG + chr1_3:1122872-1122891 None:intergenic 25.0%
!! AGTTGATTCTAATAGCTAAA+AGG + chr1_3:1122961-1122980 None:intergenic 25.0%
! AATCAACTAAAAAAGGAAAC+TGG - chr1_3:1122973-1122992 Msa0095770:intron 25.0%
! ATCAACTAAAAAAGGAAACT+GGG - chr1_3:1122974-1122993 Msa0095770:intron 25.0%
! AAACAAAATGAGATCAAGAA+AGG + chr1_3:1123072-1123091 None:intergenic 25.0%
! ACAAAAATTAGAATGGCAAA+AGG + chr1_3:1123168-1123187 None:intergenic 25.0%
!! TTTGCCATTCTAATTTTTGT+TGG - chr1_3:1123168-1123187 Msa0095770:intron 25.0%
! ATATATTACAAAAAGGGGAA+AGG - chr1_3:1123269-1123288 Msa0095770:intron 25.0%
!! GAAAATTGCATACTTTTGTA+TGG + chr1_3:1123328-1123347 None:intergenic 25.0%
!! TTTTTCTTGAATAGGGAATA+TGG - chr1_3:1123470-1123489 Msa0095770:CDS 25.0%
! TAGGCACACATATTATAATT+CGG + chr1_3:1123629-1123648 None:intergenic 25.0%
! GGAACTGGAAAAAAAAAATT+GGG + chr1_3:1123867-1123886 None:intergenic 25.0%
! GATTGATGAAACATATAACT+TGG + chr1_3:1124051-1124070 None:intergenic 25.0%
! TTGTGTAACTATAAAAGTCA+TGG + chr1_3:1124183-1124202 None:intergenic 25.0%
! TTATGGTGATACTATTCATT+AGG - chr1_3:1124204-1124223 Msa0095770:intron 25.0%
! ATTAGATAGGAAAATACCTA+CGG - chr1_3:1124408-1124427 Msa0095770:intron 25.0%
! TTCCTGTGTATGAAATTTAT+TGG - chr1_3:1124446-1124465 Msa0095770:intron 25.0%
! AACCAATAAATTTCATACAC+AGG + chr1_3:1124451-1124470 None:intergenic 25.0%
!!! ATTTATTGGTTGATAGTGTT+TGG - chr1_3:1124460-1124479 Msa0095770:intron 25.0%
! GAAATAAAAAGTTCAAAACG+AGG + chr1_3:1124848-1124867 None:intergenic 25.0%
! ATTCTTGAGAATTGATAAGT+TGG + chr1_3:1124985-1125004 None:intergenic 25.0%
! TATGAAAGTGGAAGTTAAAA+TGG + chr1_3:1125057-1125076 None:intergenic 25.0%
!!! CAATTTTTTTGCTATGAAAG+TGG + chr1_3:1125069-1125088 None:intergenic 25.0%
!! ATAAAATTGATCGGTTGTTT+TGG - chr1_3:1125241-1125260 Msa0095770:intron 25.0%
! TCATATTAAGTATTAACGGT+AGG - chr1_3:1125615-1125634 Msa0095770:intron 25.0%
! AATGAATAATATTCACCAAC+GGG + chr1_3:1126037-1126056 None:intergenic 25.0%
! GAATGAATAATATTCACCAA+CGG + chr1_3:1126038-1126057 None:intergenic 25.0%
!!! AGTTTTAATTAAATGGCTAC+GGG + chr1_3:1126170-1126189 None:intergenic 25.0%
!!! CAGTTTTAATTAAATGGCTA+CGG + chr1_3:1126171-1126190 None:intergenic 25.0%
!!! TTTTAAAACCAATACCCAAA+TGG - chr1_3:1126208-1126227 Msa0095770:intron 25.0%
!!! AACTAGGTTTTAATCAAAAC+TGG - chr1_3:1126723-1126742 Msa0095770:CDS 25.0%
!!! ACTAGGTTTTAATCAAAACT+GGG - chr1_3:1126724-1126743 Msa0095770:CDS 25.0%
!! CAAGTGGAATTTCTAAATTT+TGG + chr1_3:1126940-1126959 None:intergenic 25.0%
! AATATTTGACAACTTTCAAG+TGG + chr1_3:1126956-1126975 None:intergenic 25.0%
! AACTCATGATGTACAAATTA+AGG - chr1_3:1127498-1127517 Msa0095770:intron 25.0%
! ACTCATGATGTACAAATTAA+GGG - chr1_3:1127499-1127518 Msa0095770:intron 25.0%
! TCTATTATATGAGGAATATG+AGG + chr1_3:1127562-1127581 None:intergenic 25.0%
!! ATTAATTAAGTTGTTCCACT+TGG - chr1_3:1127686-1127705 Msa0095770:five_prime_UTR 25.0%
ATGATGAAAAGTCAGAATCA+GGG + chr1_3:1119227-1119246 None:intergenic 30.0%
AGGAAGGAATTATGGAAATT+GGG + chr1_3:1119297-1119316 None:intergenic 30.0%
AAGGAAGGAATTATGGAAAT+TGG + chr1_3:1119298-1119317 None:intergenic 30.0%
TTTATTCCCTAACCTGAAAA+GGG + chr1_3:1119455-1119474 None:intergenic 30.0%
! TTTTATTCCCTAACCTGAAA+AGG + chr1_3:1119456-1119475 None:intergenic 30.0%
AAGTGGAAGATCAAAGAAAT+AGG - chr1_3:1119534-1119553 Msa0095770:intron 30.0%
AGTGGAAGATCAAAGAAATA+GGG - chr1_3:1119535-1119554 Msa0095770:intron 30.0%
AAAGAAATAGGGTTGAAAAG+TGG - chr1_3:1119546-1119565 Msa0095770:intron 30.0%
AAGTGGAAGATCAAAGAAAT+AGG - chr1_3:1119534-1119553 Msa0095770:intron 30.0%
AGTGGAAGATCAAAGAAATA+GGG - chr1_3:1119535-1119554 Msa0095770:intron 30.0%
TGTGTTAAAGATGGAAACTT+TGG - chr1_3:1119628-1119647 Msa0095770:intron 30.0%
GTGTTAAAGATGGAAACTTT+GGG - chr1_3:1119629-1119648 Msa0095770:intron 30.0%
ATAACAATGTTGGTGTAACT+TGG - chr1_3:1119726-1119745 Msa0095770:intron 30.0%
!! TCGTTTTTGTTGGATTATTC+TGG - chr1_3:1119791-1119810 Msa0095770:intron 30.0%
GAAGTTGCAATAAGGATTAT+TGG - chr1_3:1119929-1119948 Msa0095770:intron 30.0%
CTGATTATGAATATTCTCTC+CGG + chr1_3:1119957-1119976 None:intergenic 30.0%
GAGAATATTCATAATCAGGT+TGG - chr1_3:1119959-1119978 Msa0095770:intron 30.0%
! GAATATTCATAATCAGGTTG+GGG - chr1_3:1119961-1119980 Msa0095770:intron 30.0%
GAATGGAACAGAAAATAACA+GGG - chr1_3:1120165-1120184 Msa0095770:intron 30.0%
AATGGAAGAACTACTAACAA+TGG + chr1_3:1120436-1120455 None:intergenic 30.0%
!! TAATTTGCTTGGTAGAATAG+TGG - chr1_3:1120540-1120559 Msa0095770:intron 30.0%
!!! AAGTTTTTTGAGGATCACAA+GGG - chr1_3:1120786-1120805 Msa0095770:intron 30.0%
GAATCAGTAAATAAAAGGTG+TGG + chr1_3:1120817-1120836 None:intergenic 30.0%
CTGCAGAATCAGTAAATAAA+AGG + chr1_3:1120822-1120841 None:intergenic 30.0%
! TGCAGAACAAATCTTTTTAC+TGG - chr1_3:1120837-1120856 Msa0095770:intron 30.0%
TTGCAACTTTGCTAATTGTA+AGG - chr1_3:1120897-1120916 Msa0095770:intron 30.0%
AGCTTTCATATTGTTAACAG+AGG + chr1_3:1120986-1121005 None:intergenic 30.0%
ACAATTGTAACTTACGAGAA+AGG + chr1_3:1121047-1121066 None:intergenic 30.0%
TTCATGTGATATGCATTTAC+TGG - chr1_3:1121445-1121464 Msa0095770:intron 30.0%
!!! GTTGTTTTTATAAGCTATCC+TGG - chr1_3:1121806-1121825 Msa0095770:intron 30.0%
TGATCTTAACTACATATGCA+AGG + chr1_3:1121915-1121934 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - chr1_3:1121932-1121951 Msa0095770:intron 30.0%
!!! ACAATATTGCAGCTGTTTTT+TGG - chr1_3:1122050-1122069 Msa0095770:intron 30.0%
TCATGAAACAACTACAAAGA+AGG + chr1_3:1122097-1122116 None:intergenic 30.0%
GCTGACATATTATTTCACAT+TGG - chr1_3:1122328-1122347 Msa0095770:intron 30.0%
ATACATGAGAACATATAGAC+AGG - chr1_3:1122559-1122578 Msa0095770:intron 30.0%
GACAAACATTGAAGCAAATA+AGG + chr1_3:1122606-1122625 None:intergenic 30.0%
ATTTGATGTATTGTGCATGA+CGG - chr1_3:1122685-1122704 Msa0095770:intron 30.0%
! ACATAGGTTTTTGAACTAGA+TGG - chr1_3:1122838-1122857 Msa0095770:intron 30.0%
GACTATCAGATATATTGATG+CGG - chr1_3:1123213-1123232 Msa0095770:CDS 30.0%
!!! TGACATTGTCTGACTTTTTT+AGG - chr1_3:1123373-1123392 Msa0095770:CDS 30.0%
ATTCCCTATTCAAGAAAAAC+CGG + chr1_3:1123469-1123488 None:intergenic 30.0%
TTATAATATGTGTGCCTATC+AGG - chr1_3:1123631-1123650 Msa0095770:CDS 30.0%
!! CTTTCTTGATAATGCTTTCA+AGG + chr1_3:1123675-1123694 None:intergenic 30.0%
!! CTTGAAAGCATTATCAAGAA+AGG - chr1_3:1123673-1123692 Msa0095770:intron 30.0%
TCAAGAAAGGAAGTTCATTA+CGG - chr1_3:1123686-1123705 Msa0095770:intron 30.0%
TGGAAAAAAAAAATTGGGCA+GGG + chr1_3:1123862-1123881 None:intergenic 30.0%
CGGAACTGGAAAAAAAAAAT+TGG + chr1_3:1123868-1123887 None:intergenic 30.0%
!!! TGTTCTGATTCAGTGTTTTT+TGG - chr1_3:1123943-1123962 Msa0095770:intron 30.0%
TACATGAGATGAATTGTAGT+TGG - chr1_3:1124015-1124034 Msa0095770:intron 30.0%
TGATGAAACATATAACTTGG+AGG + chr1_3:1124048-1124067 None:intergenic 30.0%
CATGCATATAACGTATAACT+TGG + chr1_3:1124121-1124140 None:intergenic 30.0%
ACTATAAAAGTCATGGATGA+TGG + chr1_3:1124176-1124195 None:intergenic 30.0%
TTTATTTGTGTACTTGCACA+CGG - chr1_3:1124264-1124283 Msa0095770:intron 30.0%
CAAATATAACAAGCAACCAT+AGG + chr1_3:1124337-1124356 None:intergenic 30.0%
AAACAGTCAGAGGAATATAA+GGG + chr1_3:1124368-1124387 None:intergenic 30.0%
!!! ATATTTTCTGAAACAGTCAG+AGG + chr1_3:1124378-1124397 None:intergenic 30.0%
ATTCATCATGTGTTATGCAA+GGG - chr1_3:1124492-1124511 Msa0095770:intron 30.0%
AAGTTCAAAACGAGGAATAA+AGG + chr1_3:1124840-1124859 None:intergenic 30.0%
! AGAGCGCTAAAAAATTGTTT+AGG - chr1_3:1124919-1124938 Msa0095770:intron 30.0%
GCTAAAAAATTGTTTAGGCT+TGG - chr1_3:1124924-1124943 Msa0095770:intron 30.0%
AAGTGGAAGTTAAAATGGAA+CGG + chr1_3:1125052-1125071 None:intergenic 30.0%
TCAGTGCGATAAATAGTTTA+CGG + chr1_3:1125147-1125166 None:intergenic 30.0%
AGATCTAGAGATTAATGAGT+TGG - chr1_3:1125436-1125455 Msa0095770:CDS 30.0%
! TAATGAGTTGGATCGAAATA+TGG - chr1_3:1125448-1125467 Msa0095770:CDS 30.0%
!!! AATGATTTTTTTTTTCCCCC+AGG + chr1_3:1125564-1125583 None:intergenic 30.0%
AATGGATAAGAGAGAAAGAT+AGG - chr1_3:1125673-1125692 Msa0095770:CDS 30.0%
ATGGATAAGAGAGAAAGATA+GGG - chr1_3:1125674-1125693 Msa0095770:CDS 30.0%
! AGTTGTGTATCATGTTTTCT+AGG - chr1_3:1125753-1125772 Msa0095770:intron 30.0%
CGCAAGAAACAAATATTTCT+AGG + chr1_3:1125880-1125899 None:intergenic 30.0%
!!! AATTTTTTTGGACATCCCTT+GGG + chr1_3:1126074-1126093 None:intergenic 30.0%
!!! GTTTTTTAATTACATACGCC+AGG + chr1_3:1126122-1126141 None:intergenic 30.0%
CGTAGCCATTTAATTAAAAC+TGG - chr1_3:1126169-1126188 Msa0095770:intron 30.0%
!!! TGGGTATTGGTTTTAAAAGT+GGG + chr1_3:1126206-1126225 None:intergenic 30.0%
!!! TTGGGTATTGGTTTTAAAAG+TGG + chr1_3:1126207-1126226 None:intergenic 30.0%
CACATTAAGTTTGACCATTT+GGG + chr1_3:1126225-1126244 None:intergenic 30.0%
AAATCAGATGAACGAATCAA+AGG + chr1_3:1126334-1126353 None:intergenic 30.0%
AGAGTTTCGTTAATAGAACT+GGG - chr1_3:1126617-1126636 Msa0095770:CDS 30.0%
GAAAGTAAAAAAGAAGTCGT+TGG - chr1_3:1126694-1126713 Msa0095770:CDS 30.0%
AAGTCGTTGGATTAATAACT+AGG - chr1_3:1126707-1126726 Msa0095770:CDS 30.0%
TCAAAACCTAAACCAAATAG+TGG - chr1_3:1126822-1126841 Msa0095770:CDS 30.0%
ATAGAAACCAATCCACTATT+TGG + chr1_3:1126837-1126856 None:intergenic 30.0%
!! AAATAGTGGATTGGTTTCTA+TGG - chr1_3:1126836-1126855 Msa0095770:CDS 30.0%
!! GGAATTTCTAAATTTTGGTG+TGG + chr1_3:1126935-1126954 None:intergenic 30.0%
TGAAATAACTACTGATGAAG+AGG - chr1_3:1126975-1126994 Msa0095770:CDS 30.0%
ATACAAGTCATTACACAAAC+TGG - chr1_3:1127277-1127296 Msa0095770:five_prime_UTR 30.0%
TTACACAAACTGGTATTAAG+AGG - chr1_3:1127287-1127306 Msa0095770:five_prime_UTR 30.0%
!! CTGAATAAAGAAGTGTTTGT+TGG + chr1_3:1127370-1127389 None:intergenic 30.0%
CAACAAACACTTCTTTATTC+AGG - chr1_3:1127368-1127387 Msa0095770:five_prime_UTR 30.0%
!! CATGAGTTGATTAAAACAAC+TGG + chr1_3:1127486-1127505 None:intergenic 30.0%
TTTGCTGAGATACTCAAAAT+CGG - chr1_3:1127523-1127542 Msa0095770:intron 30.0%
!! GTTTGTATATGTTTTTGCAC+AGG - chr1_3:1127649-1127668 Msa0095770:five_prime_UTR 30.0%
GATGATGAAAAGTCAGAATC+AGG + chr1_3:1119228-1119247 None:intergenic 35.0%
GGAAGGAATTATGGAAATTG+GGG + chr1_3:1119296-1119315 None:intergenic 35.0%
AGCGATTAAGGAAGGAATTA+TGG + chr1_3:1119305-1119324 None:intergenic 35.0%
! ATGGATTAAGCGATTAAGGA+AGG + chr1_3:1119313-1119332 None:intergenic 35.0%
! GCTTATGGATTAAGCGATTA+AGG + chr1_3:1119317-1119336 None:intergenic 35.0%
!! AAGGGAGTGAATAGCTTTAT+AGG + chr1_3:1119350-1119369 None:intergenic 35.0%
! ATTTTCTTCATCCCCTTTTC+AGG - chr1_3:1119440-1119459 Msa0095770:CDS 35.0%
TTATTCCCTAACCTGAAAAG+GGG + chr1_3:1119454-1119473 None:intergenic 35.0%
AGAGTGAAGAATTGAGGATT+AGG - chr1_3:1119589-1119608 Msa0095770:intron 35.0%
GAGTGAAGAATTGAGGATTA+GGG - chr1_3:1119590-1119609 Msa0095770:intron 35.0%
TTAAAGATGGAAACTTTGGG+TGG - chr1_3:1119632-1119651 Msa0095770:intron 35.0%
AATGTTGGTGTAACTTGGTA+TGG - chr1_3:1119731-1119750 Msa0095770:intron 35.0%
AACGAAATCGGTGACAAAAA+GGG + chr1_3:1119776-1119795 None:intergenic 35.0%
AAACGAAATCGGTGACAAAA+AGG + chr1_3:1119777-1119796 None:intergenic 35.0%
CGGAGAGAATATTCATAATC+AGG - chr1_3:1119955-1119974 Msa0095770:intron 35.0%
GAAGTAGGTTATGATGATTG+TGG - chr1_3:1119983-1120002 Msa0095770:intron 35.0%
GGAATGGAACAGAAAATAAC+AGG - chr1_3:1120164-1120183 Msa0095770:intron 35.0%
TCAGAGATATGATATTCAGC+TGG - chr1_3:1120201-1120220 Msa0095770:intron 35.0%
TTCATTCGACAGCATTTACA+AGG - chr1_3:1120277-1120296 Msa0095770:intron 35.0%
TTTGTTTGTGATGTTGAGCT+TGG - chr1_3:1120339-1120358 Msa0095770:intron 35.0%
!! TTGTTCTGAGGTAATTTGCT+TGG - chr1_3:1120529-1120548 Msa0095770:intron 35.0%
!! AGCATTTTTCGGTTGGATTT+GGG + chr1_3:1120696-1120715 None:intergenic 35.0%
!! AAGCATTTTTCGGTTGGATT+TGG + chr1_3:1120697-1120716 None:intergenic 35.0%
! TAAGCCACACAAGCATTTTT+CGG + chr1_3:1120707-1120726 None:intergenic 35.0%
!!! TTTCTCTAAGCCCCTTTTTT+CGG + chr1_3:1120748-1120767 None:intergenic 35.0%
!!! ATCACGTGAGAAGTTTTTTG+AGG - chr1_3:1120776-1120795 Msa0095770:intron 35.0%
!!! GAAGTTTTTTGAGGATCACA+AGG - chr1_3:1120785-1120804 Msa0095770:intron 35.0%
TTTACAATCTCTTCCTCTGA+AGG - chr1_3:1121078-1121097 Msa0095770:intron 35.0%
CATGCTATAAGTGTGAACAA+TGG + chr1_3:1121112-1121131 None:intergenic 35.0%
! GCATGAGTCTTGTCTTAATT+TGG - chr1_3:1121127-1121146 Msa0095770:intron 35.0%
GAAATGACTACCAGATAATG+TGG + chr1_3:1121168-1121187 None:intergenic 35.0%
CAGGTTTCTTTGTCACAATT+TGG - chr1_3:1121198-1121217 Msa0095770:intron 35.0%
ACATATTTCACTCAGCGTTA+TGG + chr1_3:1121364-1121383 None:intergenic 35.0%
!!! GTTTTATTTTGCAGGGAGAT+AGG - chr1_3:1121382-1121401 Msa0095770:intron 35.0%
ATGTGATATGCATTTACTGG+TGG - chr1_3:1121448-1121467 Msa0095770:intron 35.0%
ATATTCACGATCTTGGTCAA+TGG - chr1_3:1121540-1121559 Msa0095770:intron 35.0%
AGACTGTTTGGAAAAGCTTA+TGG + chr1_3:1121885-1121904 None:intergenic 35.0%
! CTTTTTACTAAGGACCTGTT+TGG + chr1_3:1121949-1121968 None:intergenic 35.0%
!!! CAGGAGCTTACTTTTTACTA+AGG + chr1_3:1121959-1121978 None:intergenic 35.0%
ATGCATGACATACATATGCA+AGG - chr1_3:1122010-1122029 Msa0095770:intron 35.0%
TGCATGACATACATATGCAA+GGG - chr1_3:1122011-1122030 Msa0095770:intron 35.0%
! TTAATCGACTCCATTGTTTG+AGG - chr1_3:1122212-1122231 Msa0095770:intron 35.0%
!! TCATTTGGTTGTCACTTTGT+CGG + chr1_3:1122778-1122797 None:intergenic 35.0%
AAGTGACAACCAAATGAGAA+AGG - chr1_3:1122781-1122800 Msa0095770:intron 35.0%
GGCTGAACCTTAAAAAACAT+AGG - chr1_3:1122822-1122841 Msa0095770:intron 35.0%
GCTCTAGTACCAATTTAAGA+GGG - chr1_3:1122860-1122879 Msa0095770:intron 35.0%
ATCCCTTCAGATTGTAATTG+TGG - chr1_3:1123142-1123161 Msa0095770:intron 35.0%
!!! GTACCGGTTTTTCTTGAATA+GGG - chr1_3:1123463-1123482 Msa0095770:CDS 35.0%
GAAAGTTAAATACAACCCTG+TGG + chr1_3:1123516-1123535 None:intergenic 35.0%
AACTTTCAAGCTAACATCTG+TGG - chr1_3:1123529-1123548 Msa0095770:intron 35.0%
!! AATAAAGCATTGGACCTGAT+AGG + chr1_3:1123648-1123667 None:intergenic 35.0%
TCAAGGCAGAAATAAAGCAT+TGG + chr1_3:1123658-1123677 None:intergenic 35.0%
CAAGAAAGGAAGTTCATTAC+GGG - chr1_3:1123687-1123706 Msa0095770:intron 35.0%
AAGAAAGGAAGTTCATTACG+GGG - chr1_3:1123688-1123707 Msa0095770:intron 35.0%
AATTATTACCTGTTCTGCTG+TGG + chr1_3:1123720-1123739 None:intergenic 35.0%
AAATTCCACATGGCATTAGA+GGG + chr1_3:1123815-1123834 None:intergenic 35.0%
AAAATTCCACATGGCATTAG+AGG + chr1_3:1123816-1123835 None:intergenic 35.0%
! TCTAATGCCATGTGGAATTT+TGG - chr1_3:1123815-1123834 Msa0095770:intron 35.0%
AAAAAAAATTGGGCAGGGAA+TGG + chr1_3:1123857-1123876 None:intergenic 35.0%
CTGGAAAAAAAAAATTGGGC+AGG + chr1_3:1123863-1123882 None:intergenic 35.0%
AGTATCTTCCGAAAAACCTA+TGG - chr1_3:1124318-1124337 Msa0095770:intron 35.0%
! ACAAGCAACCATAGGTTTTT+CGG + chr1_3:1124329-1124348 None:intergenic 35.0%
AACAGTCAGAGGAATATAAG+GGG + chr1_3:1124367-1124386 None:intergenic 35.0%
GAAACAGTCAGAGGAATATA+AGG + chr1_3:1124369-1124388 None:intergenic 35.0%
AAAACAAAACAAGCTACCGT+AGG + chr1_3:1124427-1124446 None:intergenic 35.0%
!!! TGGTTGATAGTGTTTGGTTT+TGG - chr1_3:1124466-1124485 Msa0095770:intron 35.0%
!!! GGTTGATAGTGTTTGGTTTT+GGG - chr1_3:1124467-1124486 Msa0095770:intron 35.0%
GATTCATCATGTGTTATGCA+AGG - chr1_3:1124491-1124510 Msa0095770:intron 35.0%
ATGCACAGATACTTTGTTCT+TGG - chr1_3:1124636-1124655 Msa0095770:intron 35.0%
TGCACAGATACTTTGTTCTT+GGG - chr1_3:1124637-1124656 Msa0095770:intron 35.0%
CAAAACGAGGAATAAAGGTA+TGG + chr1_3:1124835-1124854 None:intergenic 35.0%
TTTATCGCACTGAGAGATAT+AGG - chr1_3:1125154-1125173 Msa0095770:intron 35.0%
ATTTATGCTTGGATATGTCC+TGG - chr1_3:1125407-1125426 Msa0095770:CDS 35.0%
TTTATGCTTGGATATGTCCT+GGG - chr1_3:1125408-1125427 Msa0095770:CDS 35.0%
!!! ATCTCTAGATCTTTTTTCCC+AGG + chr1_3:1125428-1125447 None:intergenic 35.0%
! TTGGTTGTTATTGAATGTCC+TGG - chr1_3:1125543-1125562 Msa0095770:intron 35.0%
! TGGTTGTTATTGAATGTCCT+GGG - chr1_3:1125544-1125563 Msa0095770:intron 35.0%
AACTGTAAATAGACTCCACA+TGG + chr1_3:1125737-1125756 None:intergenic 35.0%
! TCGTGAACTTGAAGTATTCT+TGG - chr1_3:1125793-1125812 Msa0095770:intron 35.0%
! CGTGAACTTGAAGTATTCTT+GGG - chr1_3:1125794-1125813 Msa0095770:intron 35.0%
! CAACCTAAACATTTTCACAC+TGG + chr1_3:1125839-1125858 None:intergenic 35.0%
CAGTGTGAAAATGTTTAGGT+TGG - chr1_3:1125837-1125856 Msa0095770:intron 35.0%
TTCAAATATAGTCATGCCCA+AGG - chr1_3:1126055-1126074 Msa0095770:intron 35.0%
TCAAATATAGTCATGCCCAA+GGG - chr1_3:1126056-1126075 Msa0095770:intron 35.0%
!!! CAATTTTTTTGGACATCCCT+TGG + chr1_3:1126075-1126094 None:intergenic 35.0%
CAAGGGATGTCCAAAAAAAT+TGG - chr1_3:1126073-1126092 Msa0095770:intron 35.0%
!!! TTCTGCTGGACCAATTTTTT+TGG + chr1_3:1126086-1126105 None:intergenic 35.0%
!!! GCTTTTTAAAATGGTTCTGC+TGG + chr1_3:1126100-1126119 None:intergenic 35.0%
!! CAGAACCATTTTAAAAAGCC+TGG - chr1_3:1126101-1126120 Msa0095770:intron 35.0%
!! ATACGCCAGGCTTTTTAAAA+TGG + chr1_3:1126109-1126128 None:intergenic 35.0%
AAGTTTGACCATTTGGGTAT+TGG + chr1_3:1126219-1126238 None:intergenic 35.0%
GCACATTAAGTTTGACCATT+TGG + chr1_3:1126226-1126245 None:intergenic 35.0%
AATTCTCAATCCTTTCTCGT+TGG - chr1_3:1126297-1126316 Msa0095770:intron 35.0%
GCACTTGCAGAAAAATCAAA+CGG - chr1_3:1126389-1126408 Msa0095770:intron 35.0%
ATCACTGAATCAGGATATCT+CGG + chr1_3:1126532-1126551 None:intergenic 35.0%
GGAAAAGATATCACTGAATC+AGG + chr1_3:1126541-1126560 None:intergenic 35.0%
! TTCAGTGATATCTTTTCCAG+TGG - chr1_3:1126543-1126562 Msa0095770:intron 35.0%
CAGAGTTTCGTTAATAGAAC+TGG - chr1_3:1126616-1126635 Msa0095770:CDS 35.0%
GAGTTTCGTTAATAGAACTG+GGG - chr1_3:1126618-1126637 Msa0095770:CDS 35.0%
TAATAGAACTGGGGAAACAA+AGG - chr1_3:1126627-1126646 Msa0095770:CDS 35.0%
AATAGAACTGGGGAAACAAA+GGG - chr1_3:1126628-1126647 Msa0095770:CDS 35.0%
ACAGAATAACTCTGAACTGT+TGG - chr1_3:1126662-1126681 Msa0095770:CDS 35.0%
!! ACCTAAACCAAATAGTGGAT+TGG - chr1_3:1126827-1126846 Msa0095770:CDS 35.0%
! ACCAATCCACTATTTGGTTT+AGG + chr1_3:1126831-1126850 None:intergenic 35.0%
! TATTCAGGTTTGAGAGAGAA+AGG - chr1_3:1127383-1127402 Msa0095770:five_prime_UTR 35.0%
TTTAACCAATGCTCTGCATA+GGG + chr1_3:1127416-1127435 None:intergenic 35.0%
TTGCTGAGATACTCAAAATC+GGG - chr1_3:1127524-1127543 Msa0095770:intron 35.0%
TATGAGGAATATGAGGTTAG+CGG + chr1_3:1127555-1127574 None:intergenic 35.0%
ATAGGTTACCTGAGAGCTTA+TGG + chr1_3:1119332-1119351 None:intergenic 40.0%
!!! TTCATCCCCTTTTCAGGTTA+GGG - chr1_3:1119446-1119465 Msa0095770:CDS 40.0%
AGGGTTAGAGTGAAGAATTG+AGG - chr1_3:1119583-1119602 Msa0095770:intron 40.0%
! GACGATGCTGATGATAATGA+TGG + chr1_3:1119674-1119693 None:intergenic 40.0%
GTGTAACTTGGTATGGAATG+AGG - chr1_3:1119738-1119757 Msa0095770:intron 40.0%
ACGAAATCGGTGACAAAAAG+GGG + chr1_3:1119775-1119794 None:intergenic 40.0%
!!! GTCACCGATTTCGTTTTTGT+TGG - chr1_3:1119781-1119800 Msa0095770:intron 40.0%
CGTTCGAGTAATGATTCTGA+GGG - chr1_3:1119821-1119840 Msa0095770:intron 40.0%
! GAGGGTATGATTGTCAACAA+CGG - chr1_3:1119839-1119858 Msa0095770:intron 40.0%
ATTGTCAACAACGGAGTTTC+TGG - chr1_3:1119848-1119867 Msa0095770:intron 40.0%
GCAATAAGGATTATTGGAGC+CGG - chr1_3:1119935-1119954 Msa0095770:intron 40.0%
AGGTTATGATGATTGTGGTG+AGG - chr1_3:1119988-1120007 Msa0095770:intron 40.0%
GAAGAAGATGAAGACACAAG+AGG + chr1_3:1120100-1120119 None:intergenic 40.0%
!! TCCTTTCTCGCTTTTGTTGT+TGG - chr1_3:1120249-1120268 Msa0095770:intron 40.0%
ACCAACAACAAAAGCGAGAA+AGG + chr1_3:1120253-1120272 None:intergenic 40.0%
TTGCTTGGTAGAATAGTGGT+TGG - chr1_3:1120544-1120563 Msa0095770:intron 40.0%
TTTCCATCATTCCCAAATGC+AGG + chr1_3:1120575-1120594 None:intergenic 40.0%
!! TGGCTGTTGTTTCCGAAAAA+AGG - chr1_3:1120733-1120752 Msa0095770:intron 40.0%
!! GGCTGTTGTTTCCGAAAAAA+GGG - chr1_3:1120734-1120753 Msa0095770:intron 40.0%
!! GCTGTTGTTTCCGAAAAAAG+GGG - chr1_3:1120735-1120754 Msa0095770:intron 40.0%
TAAGGTAGAACACCGACAAA+GGG + chr1_3:1120868-1120887 None:intergenic 40.0%
! TAAGAAGCAGACAGCTTTGA+AGG - chr1_3:1121256-1121275 Msa0095770:intron 40.0%
AGGAAAGTCTCTTTACTTGC+TGG - chr1_3:1121402-1121421 Msa0095770:intron 40.0%
GTGAATATTGCATGCCAGAA+AGG + chr1_3:1121528-1121547 None:intergenic 40.0%
GCATGCAATATTCACGATCT+TGG - chr1_3:1121533-1121552 Msa0095770:intron 40.0%
TTGATCTTACATTGCTGCAG+TGG - chr1_3:1121585-1121604 Msa0095770:intron 40.0%
CCTGTAATAATTACAGACCC+CGG - chr1_3:1121975-1121994 Msa0095770:intron 40.0%
CTGTAATAATTACAGACCCC+GGG - chr1_3:1121976-1121995 Msa0095770:intron 40.0%
!!! AGCTGTTTTTTGGTCACTGA+TGG - chr1_3:1122060-1122079 Msa0095770:intron 40.0%
! TTGGTCACTGATGGTGAAAT+TGG - chr1_3:1122069-1122088 Msa0095770:intron 40.0%
AAACTTGCCTATGTGTAGAC+AGG - chr1_3:1122145-1122164 Msa0095770:CDS 40.0%
CTGCAGTCGATATCACATAA+GGG + chr1_3:1122267-1122286 None:intergenic 40.0%
ACTGCAGTCGATATCACATA+AGG + chr1_3:1122268-1122287 None:intergenic 40.0%
TAACCAAGTTGCATCTCAGT+AGG - chr1_3:1122463-1122482 Msa0095770:intron 40.0%
AAGGCTGATCCTTTCTCATT+TGG + chr1_3:1122793-1122812 None:intergenic 40.0%
! GGCTCTAGTACCAATTTAAG+AGG - chr1_3:1122859-1122878 Msa0095770:intron 40.0%
GGCCACAATTACAATCTGAA+GGG + chr1_3:1123147-1123166 None:intergenic 40.0%
AGGCCACAATTACAATCTGA+AGG + chr1_3:1123148-1123167 None:intergenic 40.0%
AAGTGTTAATCACCTGTCGA+CGG + chr1_3:1123304-1123323 None:intergenic 40.0%
!!! GGTACCGGTTTTTCTTGAAT+AGG - chr1_3:1123462-1123481 Msa0095770:CDS 40.0%
! AATGCCATGTGGAATTTTGG+AGG - chr1_3:1123818-1123837 Msa0095770:intron 40.0%
ACATCCTCCAAAATTCCACA+TGG + chr1_3:1123825-1123844 None:intergenic 40.0%
AAAATCCCATGCAACAGCAA+CGG + chr1_3:1123888-1123907 None:intergenic 40.0%
! CGGTGGTGTATATTGTTTTC+TGG - chr1_3:1124284-1124303 Msa0095770:intron 40.0%
ACAGTCAGAGGAATATAAGG+GGG + chr1_3:1124366-1124385 None:intergenic 40.0%
GCACAGATACTTTGTTCTTG+GGG - chr1_3:1124638-1124657 Msa0095770:intron 40.0%
TCTCTTGGCATATAGCACAT+AGG + chr1_3:1124742-1124761 None:intergenic 40.0%
TGTGGGAGAAGTTGAATTCA+TGG - chr1_3:1125327-1125346 Msa0095770:intron 40.0%
AATATATGGCTTTCCCATGG+TGG + chr1_3:1125363-1125382 None:intergenic 40.0%
GCAAATATATGGCTTTCCCA+TGG + chr1_3:1125366-1125385 None:intergenic 40.0%
! GGTTGTTATTGAATGTCCTG+GGG - chr1_3:1125545-1125564 Msa0095770:intron 40.0%
! GTTGTTATTGAATGTCCTGG+GGG - chr1_3:1125546-1125565 Msa0095770:intron 40.0%
TAACGGTAGGTGAGTTTAGT+AGG - chr1_3:1125628-1125647 Msa0095770:CDS 40.0%
! CTTGAAGTATTCTTGGGTGT+TGG - chr1_3:1125800-1125819 Msa0095770:intron 40.0%
!! TGGGTGTTGGACAATGTTTA+AGG - chr1_3:1125813-1125832 Msa0095770:intron 40.0%
AGGCCAGTGTGAAAATGTTT+AGG - chr1_3:1125833-1125852 Msa0095770:intron 40.0%
! AACACCACTGCACTTTTACT+AGG - chr1_3:1125984-1126003 Msa0095770:intron 40.0%
CTAAGGAAAAATGATCCCGT+TGG - chr1_3:1126019-1126038 Msa0095770:intron 40.0%
CAGATGAACGAATCAAAGGA+TGG + chr1_3:1126330-1126349 None:intergenic 40.0%
TGGAGAGAAACGACAAGAAA+GGG + chr1_3:1126361-1126380 None:intergenic 40.0%
TTGGAGAGAAACGACAAGAA+AGG + chr1_3:1126362-1126381 None:intergenic 40.0%
! TTTCTTGTCGTTTCTCTCCA+AGG - chr1_3:1126361-1126380 Msa0095770:intron 40.0%
! TTCTTGTCGTTTCTCTCCAA+GGG - chr1_3:1126362-1126381 Msa0095770:intron 40.0%
AATAATGTCACAGTCGAGTG+AGG - chr1_3:1126428-1126447 Msa0095770:intron 40.0%
! AGTGATATCTTTTCCAGTGG+AGG - chr1_3:1126546-1126565 Msa0095770:intron 40.0%
! GTGATATCTTTTCCAGTGGA+GGG - chr1_3:1126547-1126566 Msa0095770:intron 40.0%
AGTCAGTGAGTGTAGTAGAA+AGG - chr1_3:1126593-1126612 Msa0095770:intron 40.0%
AATCAAAACTGGGTCTGAAC+TGG - chr1_3:1126734-1126753 Msa0095770:CDS 40.0%
ATCAAAACTGGGTCTGAACT+GGG - chr1_3:1126735-1126754 Msa0095770:CDS 40.0%
TTACCGTGACTCATGCTTAA+TGG - chr1_3:1126864-1126883 Msa0095770:CDS 40.0%
! GAGGTATATTTGAGACGTGT+TGG - chr1_3:1126994-1127013 Msa0095770:CDS 40.0%
TTAACCAATGCTCTGCATAG+GGG + chr1_3:1127415-1127434 None:intergenic 40.0%
CTTTAACCAATGCTCTGCAT+AGG + chr1_3:1127417-1127436 None:intergenic 40.0%
! ACTTGTTGATCCATCTCCAA+AGG + chr1_3:1127455-1127474 None:intergenic 40.0%
TGCTGAGATACTCAAAATCG+GGG - chr1_3:1127525-1127544 Msa0095770:intron 40.0%
ATGAGGAATATGAGGTTAGC+GGG + chr1_3:1127554-1127573 None:intergenic 40.0%
ACACGCTCAACACTCTCAAA+AGG - chr1_3:1119183-1119202 Msa0095770:three_prime_UTR 45.0%
GAATCAGGGAGCTGAAAACT+TGG + chr1_3:1119213-1119232 None:intergenic 45.0%
CGCTTAATCCATAAGCTCTC+AGG - chr1_3:1119321-1119340 Msa0095770:three_prime_UTR 45.0%
!!! CTTCATCCCCTTTTCAGGTT+AGG - chr1_3:1119445-1119464 Msa0095770:CDS 45.0%
! GCATCGTCGTCATCATCTTT+TGG - chr1_3:1119686-1119705 Msa0095770:intron 45.0%
! TCGTCGTCATCATCTTTTGG+AGG - chr1_3:1119689-1119708 Msa0095770:intron 45.0%
! CGTCGTCATCATCTTTTGGA+GGG - chr1_3:1119690-1119709 Msa0095770:intron 45.0%
GGTGACAAAAAGGGGTTAAC+AGG + chr1_3:1119767-1119786 None:intergenic 45.0%
GCGTTCGAGTAATGATTCTG+AGG - chr1_3:1119820-1119839 Msa0095770:intron 45.0%
!! CAACAACGGAGTTTCTGGTT+CGG - chr1_3:1119853-1119872 Msa0095770:intron 45.0%
!! TTACGATCTCAGGTTGATGC+TGG - chr1_3:1119878-1119897 Msa0095770:intron 45.0%
!! CATAATCAGGTTGGGGAAGT+AGG - chr1_3:1119968-1119987 Msa0095770:intron 45.0%
GATTGTGGTGAGGAGCTTAT+TGG - chr1_3:1119998-1120017 Msa0095770:intron 45.0%
GAGCTTATTGGTGAGAGAAG+TGG - chr1_3:1120010-1120029 Msa0095770:intron 45.0%
AGAAGTGGAATGCCTGGATT+GGG - chr1_3:1120025-1120044 Msa0095770:intron 45.0%
GTGGAATTGAGGCTAGTGAA+GGG - chr1_3:1120071-1120090 Msa0095770:intron 45.0%
TGGAATTGAGGCTAGTGAAG+GGG - chr1_3:1120072-1120091 Msa0095770:intron 45.0%
ATATTCAGCTGGTTGCCAAG+TGG - chr1_3:1120212-1120231 Msa0095770:intron 45.0%
AAGAATCTGCTCGATCCACT+TGG + chr1_3:1120230-1120249 None:intergenic 45.0%
!! CCACACAAGCATTTTTCGGT+TGG + chr1_3:1120703-1120722 None:intergenic 45.0%
CCAACCGAAAAATGCTTGTG+TGG - chr1_3:1120700-1120719 Msa0095770:intron 45.0%
GCTTGTGTGGCTTACAATAC+TGG - chr1_3:1120713-1120732 Msa0095770:intron 45.0%
!! TTACTGGTTCTCCCCTTTGT+CGG - chr1_3:1120853-1120872 Msa0095770:intron 45.0%
AAGGTAGAACACCGACAAAG+GGG + chr1_3:1120867-1120886 None:intergenic 45.0%
CTAAGGTAGAACACCGACAA+AGG + chr1_3:1120869-1120888 None:intergenic 45.0%
!! AATGGATTGTGCACCTTCAG+AGG + chr1_3:1121094-1121113 None:intergenic 45.0%
AGTCATTTCTGCGAACTTGC+AGG - chr1_3:1121179-1121198 Msa0095770:intron 45.0%
! TGTTGGGTTAGGAGGTAACA+TGG + chr1_3:1121505-1121524 None:intergenic 45.0%
!! TTGCATGCCAGAAAGGTGTT+GGG + chr1_3:1121521-1121540 None:intergenic 45.0%
! ATTGCATGCCAGAAAGGTGT+TGG + chr1_3:1121522-1121541 None:intergenic 45.0%
CACGATCTTGGTCAATGGTA+TGG - chr1_3:1121545-1121564 Msa0095770:intron 45.0%
AAGCTATCCTGGAGAGCTTA+TGG - chr1_3:1121817-1121836 Msa0095770:intron 45.0%
CCTAATTCCATAAGCTCTCC+AGG + chr1_3:1121827-1121846 None:intergenic 45.0%
CCTGGAGAGCTTATGGAATT+AGG - chr1_3:1121824-1121843 Msa0095770:intron 45.0%
CAAGGACTTGTGAGACTGTT+TGG + chr1_3:1121897-1121916 None:intergenic 45.0%
CCGGGGTCTGTAATTATTAC+AGG + chr1_3:1121978-1121997 None:intergenic 45.0%
CAAGTTGCATCTCAGTAGGT+GGG - chr1_3:1122467-1122486 Msa0095770:intron 45.0%
AAGTTGCATCTCAGTAGGTG+GGG - chr1_3:1122468-1122487 Msa0095770:intron 45.0%
GGTTGGATACATGGAACAGA+CGG - chr1_3:1122489-1122508 Msa0095770:intron 45.0%
GTTGGATACATGGAACAGAC+GGG - chr1_3:1122490-1122509 Msa0095770:intron 45.0%
ATGACGGCATCAACACTTAG+AGG - chr1_3:1122701-1122720 Msa0095770:intron 45.0%
GCATCAACACTTAGAGGAGA+CGG - chr1_3:1122707-1122726 Msa0095770:intron 45.0%
! GTCACTTTGTCGGATATCAC+AGG + chr1_3:1122768-1122787 None:intergenic 45.0%
ATGAGAAAGGATCAGCCTTC+TGG - chr1_3:1122794-1122813 Msa0095770:intron 45.0%
ATTGATGCGGCAAGTTGCAA+TGG - chr1_3:1123226-1123245 Msa0095770:CDS 45.0%
AGGTCATAATTTCCGTCGAC+AGG - chr1_3:1123289-1123308 Msa0095770:intron 45.0%
AAGAAAAACCGGTACCAGAC+TGG + chr1_3:1123458-1123477 None:intergenic 45.0%
! TCTTTTCGTCACTGACCACA+GGG - chr1_3:1123498-1123517 Msa0095770:intron 45.0%
GCTAACATCTGTGGTTGAGA+AGG - chr1_3:1123538-1123557 Msa0095770:intron 45.0%
AAAGTCCCTCTAATGCCATG+TGG - chr1_3:1123807-1123826 Msa0095770:intron 45.0%
AAAATTGGGCAGGGAATGGA+GGG + chr1_3:1123853-1123872 None:intergenic 45.0%
AAAAATTGGGCAGGGAATGG+AGG + chr1_3:1123854-1123873 None:intergenic 45.0%
ATTTGTGTACTTGCACACGG+TGG - chr1_3:1124267-1124286 Msa0095770:intron 45.0%
GCATATAGCACATAGGTCAC+CGG + chr1_3:1124735-1124754 None:intergenic 45.0%
TAGGGGAATGCATCTTCTCT+TGG + chr1_3:1124757-1124776 None:intergenic 45.0%
TTTGCAGCGCAACAAGATAG+GGG + chr1_3:1124774-1124793 None:intergenic 45.0%
GTTTGCAGCGCAACAAGATA+GGG + chr1_3:1124775-1124794 None:intergenic 45.0%
TGTTTGCAGCGCAACAAGAT+AGG + chr1_3:1124776-1124795 None:intergenic 45.0%
! GCGAAGATTGTGTTTCTGAG+TGG - chr1_3:1124804-1124823 Msa0095770:intron 45.0%
ATCGCACTGAGAGATATAGG+TGG - chr1_3:1125157-1125176 Msa0095770:intron 45.0%
AGAGAAAGATAGGGTTCCCT+AGG - chr1_3:1125683-1125702 Msa0095770:intron 45.0%
TGGCAATTGTCAACGACCAA+GGG + chr1_3:1125717-1125736 None:intergenic 45.0%
ATGGCAATTGTCAACGACCA+AGG + chr1_3:1125718-1125737 None:intergenic 45.0%
! GTGCAGTGGTGTTTGTTAGA+AGG + chr1_3:1125977-1125996 None:intergenic 45.0%
! CATGCCTAGTAAAAGTGCAG+TGG + chr1_3:1125991-1126010 None:intergenic 45.0%
CTAGGCATGAAGATGCTCTA+AGG - chr1_3:1126002-1126021 Msa0095770:intron 45.0%
! CGGCTGAGAGCACATAAATT+TGG + chr1_3:1126252-1126271 None:intergenic 45.0%
AACGTTAGCGTGACATGAAG+CGG + chr1_3:1126272-1126291 None:intergenic 45.0%
GAACGAATCAAAGGATGGAC+TGG + chr1_3:1126325-1126344 None:intergenic 45.0%
GGAGAGAAACGACAAGAAAG+GGG + chr1_3:1126360-1126379 None:intergenic 45.0%
GAGGCAAAATCAGTAGTGAC+AGG + chr1_3:1126510-1126529 None:intergenic 45.0%
ACTGAATCAGGATATCTCGG+AGG + chr1_3:1126529-1126548 None:intergenic 45.0%
TGACTGCTGGAATCATGCAT+CGG + chr1_3:1126578-1126597 None:intergenic 45.0%
TGGCCATTAAGCATGAGTCA+CGG + chr1_3:1126870-1126889 None:intergenic 45.0%
GAAACAGTACTTCTGAGCTC+TGG + chr1_3:1126890-1126909 None:intergenic 45.0%
TAACCAATGCTCTGCATAGG+GGG + chr1_3:1127414-1127433 None:intergenic 45.0%
GCTGAGATACTCAAAATCGG+GGG - chr1_3:1127526-1127545 Msa0095770:intron 45.0%
GCAATTTCAGCACTTCCAAG+TGG + chr1_3:1127704-1127723 None:intergenic 45.0%
!!! ATTTTTTTTTTTAAATTGTT+AGG + chr1_3:1127063-1127082 None:intergenic 5.0%
!! GAGTGTTGAGCGTGTGAATG+CGG + chr1_3:1119178-1119197 None:intergenic 50.0%
! TGGTTCGGAGTTACGATCTC+AGG - chr1_3:1119868-1119887 Msa0095770:intron 50.0%
GTGCAGGGGAAGTTGCAATA+AGG - chr1_3:1119921-1119940 Msa0095770:intron 50.0%
GAGAAGTGGAATGCCTGGAT+TGG - chr1_3:1120024-1120043 Msa0095770:intron 50.0%
GCATCATTCTCACCCAATCC+AGG + chr1_3:1120040-1120059 None:intergenic 50.0%
ATTGGGTGAGAATGATGCCG+AGG - chr1_3:1120042-1120061 Msa0095770:intron 50.0%
TTGGGTGAGAATGATGCCGA+GGG - chr1_3:1120043-1120062 Msa0095770:intron 50.0%
GGTGGAATTGAGGCTAGTGA+AGG - chr1_3:1120070-1120089 Msa0095770:intron 50.0%
TTCATCTTCTTCGTCGTCGC+TGG - chr1_3:1120108-1120127 Msa0095770:intron 50.0%
!! TAGTGGACAGGTTGATGGTG+AGG - chr1_3:1120135-1120154 Msa0095770:intron 50.0%
!! GCACTGACTTGCTTGTTCTG+AGG - chr1_3:1120517-1120536 Msa0095770:intron 50.0%
TGGTTGGATGTGCCTGCATT+TGG - chr1_3:1120560-1120579 Msa0095770:intron 50.0%
GGTTGGATGTGCCTGCATTT+GGG - chr1_3:1120561-1120580 Msa0095770:intron 50.0%
GTGCCTGCATTTGGGAATGA+TGG - chr1_3:1120569-1120588 Msa0095770:intron 50.0%
AGCGTTATGGTACGAGGATG+AGG + chr1_3:1121351-1121370 None:intergenic 50.0%
TCACTCAGCGTTATGGTACG+AGG + chr1_3:1121357-1121376 None:intergenic 50.0%
TTAGGAGGTAACATGGCCAG+TGG + chr1_3:1121498-1121517 None:intergenic 50.0%
!! CAGAAAGGTGTTGGGTTAGG+AGG + chr1_3:1121513-1121532 None:intergenic 50.0%
CTCCTAACCCAACACCTTTC+TGG - chr1_3:1121511-1121530 Msa0095770:intron 50.0%
!! TGCCAGAAAGGTGTTGGGTT+AGG + chr1_3:1121516-1121535 None:intergenic 50.0%
ATGCATTCAGCATCTCACCC+GGG + chr1_3:1121996-1122015 None:intergenic 50.0%
CATGCATTCAGCATCTCACC+CGG + chr1_3:1121997-1122016 None:intergenic 50.0%
ACGGCATCCTGTCTACACAT+AGG + chr1_3:1122155-1122174 None:intergenic 50.0%
CCACCTACTGAGATGCAACT+TGG + chr1_3:1122469-1122488 None:intergenic 50.0%
CCAAGTTGCATCTCAGTAGG+TGG - chr1_3:1122466-1122485 Msa0095770:intron 50.0%
AGTAGGTGGGGTTGGATACA+TGG - chr1_3:1122480-1122499 Msa0095770:intron 50.0%
CCATCTAGTACAGTGTCCTC+CGG + chr1_3:1122737-1122756 None:intergenic 50.0%
GAGGACACTGTACTAGATGG+TGG - chr1_3:1122737-1122756 Msa0095770:intron 50.0%
AGGATCAGCCTTCTGGATGT+TGG - chr1_3:1122801-1122820 Msa0095770:intron 50.0%
AGGTTCAGCCAACATCCAGA+AGG + chr1_3:1122812-1122831 None:intergenic 50.0%
! CTCTTTTCGTCACTGACCAC+AGG - chr1_3:1123497-1123516 Msa0095770:intron 50.0%
! CAGTTCCGTTGCTGTTGCAT+GGG - chr1_3:1123880-1123899 Msa0095770:intron 50.0%
! CATGTGTTATGCAAGGGTGC+TGG - chr1_3:1124498-1124517 Msa0095770:intron 50.0%
GAAACACAGGTTACTGCTGC+CGG - chr1_3:1124713-1124732 Msa0095770:intron 50.0%
! TTTCCCATGGTGGAGAACTG+AGG + chr1_3:1125353-1125372 None:intergenic 50.0%
! AAGCCTTGTCCCACTAAGTG+GGG + chr1_3:1125525-1125544 None:intergenic 50.0%
! CAAGCCTTGTCCCACTAAGT+GGG + chr1_3:1125526-1125545 None:intergenic 50.0%
GATAGGGTTCCCTAGGTCTT+TGG - chr1_3:1125690-1125709 Msa0095770:intron 50.0%
ACCAAGGGTCCAAAGACCTA+GGG + chr1_3:1125702-1125721 None:intergenic 50.0%
GGTCGTTGACAATTGCCATG+TGG - chr1_3:1125719-1125738 Msa0095770:intron 50.0%
AGGTTCTCGACATCTCGTTG+AGG - chr1_3:1126448-1126467 Msa0095770:intron 50.0%
TCGACATCTCGTTGAGGCTT+AGG - chr1_3:1126454-1126473 Msa0095770:intron 50.0%
GACTGCTGGAATCATGCATC+GGG + chr1_3:1126577-1126596 None:intergenic 50.0%
! CTACTACACTCACTGACTGC+TGG + chr1_3:1126591-1126610 None:intergenic 50.0%
GAAACAGTTCCGAACTGGCT+TGG + chr1_3:1126762-1126781 None:intergenic 50.0%
CTTGCGAAACAGTTCCGAAC+TGG + chr1_3:1126767-1126786 None:intergenic 50.0%
! GATCTTCGCACCTTTGGAGA+TGG - chr1_3:1127442-1127461 Msa0095770:intron 50.0%
!! CGATCTCAGGTTGATGCTGG+TGG - chr1_3:1119881-1119900 Msa0095770:intron 55.0%
!! ATGCTGGTGGTGCTGTTGCT+GGG - chr1_3:1119894-1119913 Msa0095770:intron 55.0%
CTGTTGCTGGGAGTAGTGCA+GGG - chr1_3:1119906-1119925 Msa0095770:intron 55.0%
TGTTGCTGGGAGTAGTGCAG+GGG - chr1_3:1119907-1119926 Msa0095770:intron 55.0%
GGTGAGAGAAGTGGAATGCC+TGG - chr1_3:1120019-1120038 Msa0095770:intron 55.0%
CTCAATTCCACCACGACCCT+CGG + chr1_3:1120062-1120081 None:intergenic 55.0%
!! GCTGGTAGTGGACAGGTTGA+TGG - chr1_3:1120130-1120149 Msa0095770:intron 55.0%
!! AGGTTGATGGTGAGGCTGCT+GGG - chr1_3:1120143-1120162 Msa0095770:intron 55.0%
TGCATTCAGCATCTCACCCG+GGG + chr1_3:1121995-1122014 None:intergenic 55.0%
TGCATCTCAGTAGGTGGGGT+TGG - chr1_3:1122472-1122491 Msa0095770:intron 55.0%
ACTTAGAGGAGACGGCTGAC+CGG - chr1_3:1122715-1122734 Msa0095770:intron 55.0%
CCGGAGGACACTGTACTAGA+TGG - chr1_3:1122734-1122753 Msa0095770:intron 55.0%
!! CCAGACTGGTGTTGGCAACA+AGG + chr1_3:1123444-1123463 None:intergenic 55.0%
CCTTGTTGCCAACACCAGTC+TGG - chr1_3:1123441-1123460 Msa0095770:CDS 55.0%
TGCCAACACCAGTCTGGTAC+CGG - chr1_3:1123447-1123466 Msa0095770:CDS 55.0%
AACCGGTACCAGACTGGTGT+TGG + chr1_3:1123452-1123471 None:intergenic 55.0%
GGTCTATGCCACAGCAGAAC+AGG - chr1_3:1123709-1123728 Msa0095770:intron 55.0%
CCATGCAACAGCAACGGAAC+TGG + chr1_3:1123882-1123901 None:intergenic 55.0%
! CCAGTTCCGTTGCTGTTGCA+TGG - chr1_3:1123879-1123898 Msa0095770:intron 55.0%
ATGGCCTCAGTTCTCCACCA+TGG - chr1_3:1125346-1125365 Msa0095770:CDS 55.0%
TGGCCTCAGTTCTCCACCAT+GGG - chr1_3:1125347-1125366 Msa0095770:CDS 55.0%
ACTAAGTGGGGACTTGGGGT+CGG + chr1_3:1125513-1125532 None:intergenic 55.0%
ACCCCAAGTCCCCACTTAGT+GGG - chr1_3:1125513-1125532 Msa0095770:intron 55.0%
TCCCACTAAGTGGGGACTTG+GGG + chr1_3:1125517-1125536 None:intergenic 55.0%
GTCCCACTAAGTGGGGACTT+GGG + chr1_3:1125518-1125537 None:intergenic 55.0%
TGTCCCACTAAGTGGGGACT+TGG + chr1_3:1125519-1125538 None:intergenic 55.0%
AGTCCCCACTTAGTGGGACA+AGG - chr1_3:1125519-1125538 Msa0095770:intron 55.0%
! CCAAGCCTTGTCCCACTAAG+TGG + chr1_3:1125527-1125546 None:intergenic 55.0%
CCACTTAGTGGGACAAGGCT+TGG - chr1_3:1125524-1125543 Msa0095770:intron 55.0%
TCCCTAGGTCTTTGGACCCT+TGG - chr1_3:1125698-1125717 Msa0095770:intron 55.0%
GACCAAGGGTCCAAAGACCT+AGG + chr1_3:1125703-1125722 None:intergenic 55.0%
!! TGGACTGGCACCAACGAGAA+AGG + chr1_3:1126310-1126329 None:intergenic 55.0%
TTCTGCAAGTGCAGAGCCCT+TGG + chr1_3:1126381-1126400 None:intergenic 55.0%
TGCTCAGAGCTGCTTCTCGT+TGG + chr1_3:1126482-1126501 None:intergenic 55.0%
GAACTGGGACCAAGCCAGTT+CGG - chr1_3:1126750-1126769 Msa0095770:CDS 55.0%
TTGCCCCCTATGCAGAGCAT+TGG - chr1_3:1127408-1127427 Msa0095770:five_prime_UTR 55.0%
GCAGCTGATCTTCGCACCTT+TGG - chr1_3:1127436-1127455 Msa0095770:intron 55.0%
!! GATGCTGGTGGTGCTGTTGC+TGG - chr1_3:1119893-1119912 Msa0095770:intron 60.0%
GCTGTTGCTGGGAGTAGTGC+AGG - chr1_3:1119905-1119924 Msa0095770:intron 60.0%
GAGAATGATGCCGAGGGTCG+TGG - chr1_3:1120049-1120068 Msa0095770:intron 60.0%
AATGATGCCGAGGGTCGTGG+TGG - chr1_3:1120052-1120071 Msa0095770:intron 60.0%
! CGAGGGTCGTGGTGGAATTG+AGG - chr1_3:1120060-1120079 Msa0095770:intron 60.0%
TCTTCTTCGTCGTCGCTGGC+TGG - chr1_3:1120112-1120131 Msa0095770:intron 60.0%
!! CAGGTTGATGGTGAGGCTGC+TGG - chr1_3:1120142-1120161 Msa0095770:intron 60.0%
GATGGTGAGGCTGCTGGGAA+TGG - chr1_3:1120148-1120167 Msa0095770:intron 60.0%
GACCCCAAGTCCCCACTTAG+TGG - chr1_3:1125512-1125531 Msa0095770:intron 60.0%
GCATCGGGATATCCCTCCAC+TGG + chr1_3:1126562-1126581 None:intergenic 60.0%
! TCGTCGTCGCTGGCTGGTAG+TGG - chr1_3:1120118-1120137 Msa0095770:intron 65.0%
!! GTCGCTGGCTGGTAGTGGAC+AGG - chr1_3:1120123-1120142 Msa0095770:intron 65.0%
TAGAGGAGACGGCTGACCGG+AGG - chr1_3:1122718-1122737 Msa0095770:intron 65.0%
GGGACTTGGGGTCGGCTACA+TGG + chr1_3:1125505-1125524 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 1119123 1127779 1119123 ID=Msa0095770;Name=Msa0095770
chr1_3 mRNA 1119123 1127779 1119123 ID=Msa0095770-mRNA-1;Parent=Msa0095770;Name=Msa0095770-mRNA-1;_AED=0.10;_eAED=0.10;_QI=367|1|1|1|0.66|0.6|10|284|481
chr1_3 exon 1119123 1119512 1119123 ID=Msa0095770-mRNA-1:exon:186;Parent=Msa0095770-mRNA-1
chr1_3 exon 1122077 1122180 1122077 ID=Msa0095770-mRNA-1:exon:185;Parent=Msa0095770-mRNA-1
chr1_3 exon 1123172 1123249 1123172 ID=Msa0095770-mRNA-1:exon:184;Parent=Msa0095770-mRNA-1
chr1_3 exon 1123343 1123507 1123343 ID=Msa0095770-mRNA-1:exon:183;Parent=Msa0095770-mRNA-1
chr1_3 exon 1123592 1123680 1123592 ID=Msa0095770-mRNA-1:exon:182;Parent=Msa0095770-mRNA-1
chr1_3 exon 1125341 1125506 1125341 ID=Msa0095770-mRNA-1:exon:181;Parent=Msa0095770-mRNA-1
chr1_3 exon 1125625 1125701 1125625 ID=Msa0095770-mRNA-1:exon:180;Parent=Msa0095770-mRNA-1
chr1_3 exon 1126604 1127317 1126604 ID=Msa0095770-mRNA-1:exon:179;Parent=Msa0095770-mRNA-1
chr1_3 exon 1127347 1127440 1127347 ID=Msa0095770-mRNA-1:exon:178;Parent=Msa0095770-mRNA-1
chr1_3 exon 1127560 1127779 1127560 ID=Msa0095770-mRNA-1:exon:177;Parent=Msa0095770-mRNA-1
chr1_3 five_prime_UTR 1127560 1127779 1127560 ID=Msa0095770-mRNA-1:five_prime_utr;Parent=Msa0095770-mRNA-1
chr1_3 five_prime_UTR 1127347 1127440 1127347 ID=Msa0095770-mRNA-1:five_prime_utr;Parent=Msa0095770-mRNA-1
chr1_3 five_prime_UTR 1127265 1127317 1127265 ID=Msa0095770-mRNA-1:five_prime_utr;Parent=Msa0095770-mRNA-1
chr1_3 CDS 1126604 1127264 1126604 ID=Msa0095770-mRNA-1:cds;Parent=Msa0095770-mRNA-1
chr1_3 CDS 1125625 1125701 1125625 ID=Msa0095770-mRNA-1:cds;Parent=Msa0095770-mRNA-1
chr1_3 CDS 1125341 1125506 1125341 ID=Msa0095770-mRNA-1:cds;Parent=Msa0095770-mRNA-1
chr1_3 CDS 1123592 1123680 1123592 ID=Msa0095770-mRNA-1:cds;Parent=Msa0095770-mRNA-1
chr1_3 CDS 1123343 1123507 1123343 ID=Msa0095770-mRNA-1:cds;Parent=Msa0095770-mRNA-1
chr1_3 CDS 1123172 1123249 1123172 ID=Msa0095770-mRNA-1:cds;Parent=Msa0095770-mRNA-1
chr1_3 CDS 1122077 1122180 1122077 ID=Msa0095770-mRNA-1:cds;Parent=Msa0095770-mRNA-1
chr1_3 CDS 1119407 1119512 1119407 ID=Msa0095770-mRNA-1:cds;Parent=Msa0095770-mRNA-1
chr1_3 three_prime_UTR 1119123 1119406 1119123 ID=Msa0095770-mRNA-1:three_prime_utr;Parent=Msa0095770-mRNA-1
Gene Sequence

>Msa0095770

ATGGAAACTTTGGGTGGTAATTCATCATCATCACCATCATTATCATCAGCATCGTCGTCATCATCTTTTGGAGGGATTAATACTGATGATAACAATGTTGGTGTAACTTGGTATGGAATGAGGTTACCTGTTAACCCCTTTTTGTCACCGATTTCGTTTTTGTTGGATTATTCTGGAATTTTGCGTTCGAGTAATGATTCTGAGGGTATGATTGTCAACAACGGAGTTTCTGGTTCGGAGTTACGATCTCAGGTTGATGCTGGTGGTGCTGTTGCTGGGAGTAGTGCAGGGGAAGTTGCAATAAGGATTATTGGAGCCGGAGAGAATATTCATAATCAGGTTGGGGAAGTAGGTTATGATGATTGTGGTGAGGAGCTTATTGGTGAGAGAAGTGGAATGCCTGGATTGGGTGAGAATGATGCCGAGGGTCGTGGTGGAATTGAGGCTAGTGAAGGGGTTCCTCTTGTGTCTTCATCTTCTTCGTCGTCGCTGGCTGGTAGTGGACAGGTTGATGGTGAGGCTGCTGGGAATGGAACAGAAAATAACAGGGATTCGTCTTCTCATCAGAGATATGATATTCAGCTGGTTGCCAAGTGGATCGAGCAGATTCTTCCTTTCTCGCTTTTGTTGTTGGTTGTTTTCATTCGACAGCATTTACAAGGTTTCTTTGTCACAATTTGGATAGCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTTTGAAGGGAGATAGGAAAGTCTCTTTACTTGCTGGTATCGCTTTTGCTTTCATTCTTCATGTGATATGCATTTACTGGTGGTATCGAAATGATGATATTTTATATCCACTGGCCATGTTACCTCCTAACCCAACACCTTTCTGGCATGCAATATTCACGATCTTGGTCAATGATATATTGATGCGGCAAGTTGCAATGGCTTTTAAGTGTATCCTTCTTATATATTACAAAAAGGGGAAAGGTCATAATTTCCGTCGACAGGCTCAAATGTTAACTCTTGTTGAGTACACGCTGCTGTTGTATCGTGCCTTGTTGCCAACACCAGTCTGGTACCGGTTTTTCTTGAATAGGGAATATGGAAGTCTCTTTTCGTCACTGACCACAGGGTTGTATTTAACTTTCAAGCTAACATCTGTGGTTGAGAAGGTCCAATGCTTTATTTCTGCCTTGAAAGCATTATCAAGAAAGGAAGTTCATTACGGGGTCTATGCCACAGCAGAACAGGTTACTGCTGCCGGTGACCTATGTGCTATATGCCAAGAGAAGATGCATTCCCCTATCTTGTTGCGCTGCAAACACATTTTCTGCGAAGATTGTGTTTCTGAGTGGTTTGAGAGAGAAAGGACTTGCCCCCTATGCAGAGCATTGGTTAAAGCAGCTGATCTTCGCACCTTTGGAGATGGATCAACAAGTTTGTTCTTCCAGTTGTTTTAA

Protein sequence

>Msa0095770

METLGGNSSSSPSLSSASSSSSFGGINTDDNNVGVTWYGMRLPVNPFLSPISFLLDYSGILRSSNDSEGMIVNNGVSGSELRSQVDAGGAVAGSSAGEVAIRIIGAGENIHNQVGEVGYDDCGEELIGERSGMPGLGENDAEGRGGIEASEGVPLVSSSSSSSLAGSGQVDGEAAGNGTENNRDSSSHQRYDIQLVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNEIVKKQTALKGDRKVSLLAGIAFAFILHVICIYWWYRNDDILYPLAMLPPNPTPFWHAIFTILVNDILMRQVAMAFKCILLIYYKKGKGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSVVEKVQCFISALKALSRKEVHYGVYATAEQVTAAGDLCAICQEKMHSPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRTFGDGSTSLFFQLF*