AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0786750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0786750 MtrunA17_Chr5g0442811 94.715 492 5 1 48 518 1 492 0.0 952
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0786750 AT2G30880.1 70.600 500 116 7 49 518 6 504 0.0 653
Msa0786750 AT2G30880.2 76.596 376 67 1 49 403 6 381 0.0 567

Find 118 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATGAGGAGCTACAAAATT+TGG 0.192196 5_2:+72303262 Msa0786750:CDS
AAGCTGCTTCCATCAGTTTC+TGG 0.243919 5_2:-72304972 None:intergenic
GGGAATGGTTCTACAAAATT+AGG 0.266451 5_2:+72301748 Msa0786750:CDS
GGACCCAACAACTGGGAAAA+TGG 0.267982 5_2:+72300197 Msa0786750:CDS
TGCTGCTGCCTCGGCGGCTT+CGG 0.275529 5_2:-72303348 None:intergenic
CCAGAGAGATGCTGCTATTA+AGG 0.285614 5_2:+72303860 Msa0786750:intron
CGTCAGCTAGCTTCTGCTTC+TGG 0.300599 5_2:+72299000 Msa0786750:CDS
CAACGAATGGAGCGATATTC+AGG 0.306147 5_2:+72304908 Msa0786750:CDS
AGTTGTTGATCTACGCCTTA+TGG 0.312222 5_2:+72298831 Msa0786750:CDS
GGACCATCAGTAGTCCTATT+TGG 0.315687 5_2:-72301877 None:intergenic
CATGTTTGGTTGTTATCATC+AGG 0.317213 5_2:-72305066 None:intergenic
TTCTGGTAGAAATCTGTTGC+AGG 0.325130 5_2:+72299017 Msa0786750:CDS
AAATATGTGGCGTACTGAAC+TGG 0.336452 5_2:+72303887 Msa0786750:CDS
TACACACTCAATCAACAAAA+TGG 0.344827 5_2:-72305133 None:intergenic
CTCTTGGAATGATGCCAAAT+AGG 0.350376 5_2:+72301863 Msa0786750:CDS
AGCATCTGCTGCTTATACTA+TGG 0.357385 5_2:+72303367 Msa0786750:CDS
TGTAGAACCATTCCCACTTA+AGG 0.357415 5_2:-72301740 None:intergenic
AAAATTTGGCTCGAGACCTT+CGG 0.369260 5_2:+72303276 Msa0786750:CDS
GTGATCTTGGACCCAACAAC+TGG 0.369582 5_2:+72300189 Msa0786750:CDS
TTTGGTGACAGCTGAGGAAA+TGG 0.377415 5_2:+72300154 Msa0786750:intron
AACTTCCTCATTTAGATATC+GGG 0.385027 5_2:+72300683 Msa0786750:intron
TGAAAACACAGAGAATAGTT+TGG 0.385837 5_2:+72298966 Msa0786750:CDS
CTCCATTCGTTGTCACCAAC+TGG 0.392987 5_2:-72304897 None:intergenic
AAATTTGGCTCGAGACCTTC+GGG 0.393652 5_2:+72303277 Msa0786750:CDS
TTTGCTATCTTGTACATGTT+TGG 0.394045 5_2:-72305080 None:intergenic
ATTTCTTTGCGAAATGCTCT+TGG 0.394738 5_2:+72301847 Msa0786750:CDS
GAACGAACGTTGGGTGATCT+TGG 0.411577 5_2:+72300176 Msa0786750:CDS
TAAGAGCGGAAGAGAAGGTC+AGG 0.418970 5_2:+72303952 Msa0786750:CDS
CAATGCTGAAGCTAGGATAA+AGG 0.428297 5_2:+72303986 Msa0786750:CDS
ATAGGAAACACTAAGAGTTA+AGG 0.432753 5_2:+72303241 Msa0786750:intron
AGGCAAGGATAGCCGATGTA+AGG 0.435309 5_2:+72304937 Msa0786750:CDS
CTCCTGGTGCAGCTCGAGCA+TGG 0.438189 5_2:+72300743 Msa0786750:CDS
TCCTGGTGCAGCTCGAGCAT+GGG 0.444038 5_2:+72300744 Msa0786750:CDS
AAAGTTTCAAACCCAACAAA+AGG 0.446581 5_2:-72298793 None:intergenic
TTCCTATGCGCGGAGACTCC+TGG 0.453816 5_2:+72300727 Msa0786750:CDS
CTGGCTGAATGTTGTTTACC+TGG 0.455370 5_2:-72304878 None:intergenic
ATTCCAGTGGTTAGCCAGCC+AGG 0.464960 5_2:+72304999 Msa0786750:CDS
AGCAGCAGATGCTGCTGCCT+CGG 0.468375 5_2:-72303357 None:intergenic
TGTGTTATAATGACCTTGAA+AGG 0.469440 5_2:+72305197 Msa0786750:three_prime_UTR
GTTGTTATCATCAGGGCTGA+TGG 0.475883 5_2:-72305058 None:intergenic
CTACATTCTCTGCAGGGATA+GGG 0.482199 5_2:-72304839 None:intergenic
AGCCAGTTGGTGACAACGAA+TGG 0.489395 5_2:+72304895 Msa0786750:CDS
CTTTATCCTAGCTTCAGCAT+TGG 0.489764 5_2:-72303985 None:intergenic
CGTAGATCAACAACTCTTGT+CGG 0.491289 5_2:-72298823 None:intergenic
ACTACATTCTCTGCAGGGAT+AGG 0.492687 5_2:-72304840 None:intergenic
GAGGAAATGGAACGAACGTT+GGG 0.494683 5_2:+72300167 Msa0786750:CDS
ATGTGAACTACATTCTCTGC+AGG 0.496979 5_2:-72304846 None:intergenic
GGAAAAGTTAATTACAGTCT+CGG 0.501614 5_2:-72299058 None:intergenic
TAGGACTACTGATGGTCCTA+TGG 0.502862 5_2:+72301882 Msa0786750:CDS
CATGCTTACTTGAAATTCAC+AGG 0.510486 5_2:-72300404 None:intergenic
ACCCATGCTCGAGCTGCACC+AGG 0.524783 5_2:-72300745 None:intergenic
ATGTTTGGTTGTTATCATCA+GGG 0.526491 5_2:-72305065 None:intergenic
AGAGTACCGGAGAAGCCATA+AGG 0.527526 5_2:-72298846 None:intergenic
GCAGGAGGTGTATGCACAGA+AGG 0.529056 5_2:+72303451 Msa0786750:CDS
GTGAATTCCTTAAGTGGGAA+TGG 0.529448 5_2:+72301733 Msa0786750:CDS
AGAATTGTTCCCTTGACAGT+TGG 0.531526 5_2:-72300350 None:intergenic
TCTACGCCTTATGGCTTCTC+CGG 0.532808 5_2:+72298840 Msa0786750:CDS
GAAGCTGTGAATTCCTTAAG+TGG 0.533425 5_2:+72301727 Msa0786750:CDS
ATACCTGGCTGGCTAACCAC+TGG 0.534090 5_2:-72305002 None:intergenic
AGTGGCAACAAAAGAGAAGC+AGG 0.535884 5_2:+72304028 Msa0786750:CDS
TATCGGGACACCACAGAAGA+AGG 0.538158 5_2:+72300699 Msa0786750:CDS
AAGAAATGAGCCAACTGTCA+AGG 0.539148 5_2:+72300340 Msa0786750:CDS
TGTAGTAAGAGCGGAAGAGA+AGG 0.540021 5_2:+72303947 Msa0786750:CDS
GTGTTATAATGACCTTGAAA+GGG 0.542507 5_2:+72305198 Msa0786750:three_prime_UTR
ACATTCCGAGGCTGTTGAGT+TGG 0.543936 5_2:-72301797 None:intergenic
GGCAAGGATAGCCGATGTAA+GGG 0.546348 5_2:+72304938 Msa0786750:CDS
ATGATTGTTAAATCATCCAT+AGG 0.546789 5_2:-72301898 None:intergenic
AATATGTGGCGTACTGAACT+GGG 0.547593 5_2:+72303888 Msa0786750:CDS
AGAAACTGATGGAAGCAGCT+TGG 0.549548 5_2:+72304974 Msa0786750:CDS
AGTGGGCTACCGAAGTATGA+TGG 0.552759 5_2:+72300549 Msa0786750:intron
AAAAGATTCTGAGAAGCAGC+AGG 0.553932 5_2:+72303433 Msa0786750:CDS
GTCTCGGATCTCTTAAGAAG+TGG 0.556862 5_2:-72299042 None:intergenic
CTGAGGCCAATGCTGAAGCT+AGG 0.557271 5_2:+72303979 Msa0786750:CDS
TGCTAAAAGCACAACTTCAA+AGG 0.561884 5_2:+72304072 Msa0786750:CDS
TGCAGCCAACTCAACAGCCT+CGG 0.564100 5_2:+72301792 Msa0786750:CDS
GGTTTGCTCTAGAAACACTT+AGG 0.566012 5_2:-72304818 None:intergenic
AGAAATGAGCCAACTGTCAA+GGG 0.571886 5_2:+72300341 Msa0786750:CDS
GGTGATGATTGATACCTGGC+TGG 0.573491 5_2:-72305013 None:intergenic
CACCAGGAGTCTCCGCGCAT+AGG 0.573977 5_2:-72300729 None:intergenic
AGCAGATGCTGCTGCCTCGG+CGG 0.574207 5_2:-72303354 None:intergenic
AGTTCACATGGCAACAGACC+AGG 0.584699 5_2:+72304860 Msa0786750:CDS
GGATGATTTAACAATCATGA+AGG 0.585369 5_2:+72301903 Msa0786750:CDS
TCGTGGTGATGATTGATACC+TGG 0.587331 5_2:-72305017 None:intergenic
AAGAGTTTGATCCTTGTTCG+TGG 0.588496 5_2:-72305034 None:intergenic
AACACTAAGAGTTAAGGATG+AGG 0.588499 5_2:+72303247 Msa0786750:CDS
TGAGGAAATGGAACGAACGT+TGG 0.588772 5_2:+72300166 Msa0786750:CDS
TCTGGTAGAAATCTGTTGCA+GGG 0.589058 5_2:+72299018 Msa0786750:CDS
AGAAGCAACTGTAGTAAGAG+CGG 0.589787 5_2:+72303938 Msa0786750:CDS
ATGCCAAATAGGACTACTGA+TGG 0.592713 5_2:+72301874 Msa0786750:CDS
GTCGCAGCACCAGAAACTGA+TGG 0.593220 5_2:+72304963 Msa0786750:CDS
TGCAGAGAATGTAGTTCACA+TGG 0.596449 5_2:+72304848 Msa0786750:CDS
AAGCTGTGAATTCCTTAAGT+GGG 0.598255 5_2:+72301728 Msa0786750:CDS
ATCAATCATCACCACGAACA+AGG 0.599152 5_2:+72305023 Msa0786750:CDS
AGCTGTACAGAGAGAATCAG+TGG 0.602753 5_2:+72304010 Msa0786750:CDS
AGGAAATAATCCTTCTTCTG+TGG 0.603393 5_2:-72300709 None:intergenic
AATTTCTTTAGAACATTCCG+AGG 0.603804 5_2:-72301809 None:intergenic
TCACACCAGTGCCACTCAGT+TGG 0.610667 5_2:+72301687 Msa0786750:intron
TGATCTTGGACCCAACAACT+GGG 0.611893 5_2:+72300190 Msa0786750:CDS
GAAGGATTATTTCCTATGCG+CGG 0.615384 5_2:+72300717 Msa0786750:CDS
CTATTAAGGAGGCAAATATG+TGG 0.616871 5_2:+72303874 Msa0786750:CDS
AGAGAAGGTCAGGGTTGCTG+AGG 0.616929 5_2:+72303962 Msa0786750:CDS
TTCAACTATAACAGAAATAG+CGG 0.620673 5_2:+72303307 Msa0786750:CDS
TAGTTGAATCACGTGCCCGA+AGG 0.632429 5_2:-72303292 None:intergenic
TGATCCCACTGAAGAAAATG+TGG 0.636056 5_2:+72304785 Msa0786750:CDS
TGAGACTGCCGAAGCCGCCG+AGG 0.640696 5_2:+72303340 Msa0786750:CDS
ATGCAGCATCCATCATACTT+CGG 0.643638 5_2:-72300558 None:intergenic
GTAAACAACATTCAGCCAGT+TGG 0.644235 5_2:+72304882 Msa0786750:CDS
GAGCGATATTCAGGCTACAG+AGG 0.646570 5_2:+72304917 Msa0786750:CDS
AAGAGCGGAAGAGAAGGTCA+GGG 0.649867 5_2:+72303953 Msa0786750:CDS
ATATTCAGGCTACAGAGGCA+AGG 0.654585 5_2:+72304922 Msa0786750:CDS
GAGAGATGCTGCTATTAAGG+AGG 0.656995 5_2:+72303863 Msa0786750:intron
CTTATACTATGGATGAGCAA+CGG 0.660420 5_2:+72303378 Msa0786750:CDS
TGTGAACTACATTCTCTGCA+GGG 0.666902 5_2:-72304845 None:intergenic
AGATTCTGAGAAGCAGCAGG+AGG 0.670302 5_2:+72303436 Msa0786750:CDS
ATTCACAGGAGATACAGTAA+TGG 0.674475 5_2:-72300390 None:intergenic
AAGCAGCTTGGATATTCCAG+TGG 0.674719 5_2:+72304986 Msa0786750:CDS
ATGTTCTAAAGAAATTGAAG+CGG 0.687851 5_2:+72301816 Msa0786750:CDS
TGCTGCGACTTCCCTTACAT+CGG 0.697961 5_2:-72304949 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATTTTTATAATTTT+CGG + chr5_2:72300601-72300620 Msa0786750:intron 0.0%
!!! ATAAAATACTAATCAATTTT+GGG - chr5_2:72299287-72299306 None:intergenic 10.0%
!! TAATTGTTGAAAATTTAAAA+AGG + chr5_2:72299797-72299816 Msa0786750:intron 10.0%
!!! TGAAAAATTTGTTATTTTTT+TGG + chr5_2:72300136-72300155 Msa0786750:intron 10.0%
!!! TATACTAATTTGATTTATTT+CGG + chr5_2:72300518-72300537 Msa0786750:intron 10.0%
!! AATATAAAAATGACAAAAAA+AGG - chr5_2:72300590-72300609 None:intergenic 10.0%
!!! CAATATATTTTGAAATTAAA+TGG + chr5_2:72300836-72300855 Msa0786750:intron 10.0%
!!! AATTTATAAGATATTTTTAG+CGG + chr5_2:72300886-72300905 Msa0786750:intron 10.0%
!!! TTTTGTTATATTTTAGTTTT+TGG - chr5_2:72301069-72301088 None:intergenic 10.0%
!!! TTCAATTTTTATTGTGTTAA+TGG + chr5_2:72299166-72299185 Msa0786750:intron 15.0%
!!! GATAAAATACTAATCAATTT+TGG - chr5_2:72299288-72299307 None:intergenic 15.0%
!! AAAATTTAAAAAGGATTGAA+GGG + chr5_2:72299806-72299825 Msa0786750:intron 15.0%
!!! TCATGTTTTCAAATTATTAT+CGG + chr5_2:72299977-72299996 Msa0786750:intron 15.0%
!!! ATATATTATTTTTGTGTGAA+GGG + chr5_2:72300252-72300271 Msa0786750:intron 15.0%
!!! GTTATTTTTCTTTGATTTTT+AGG + chr5_2:72300312-72300331 Msa0786750:intron 15.0%
!!! ATTTATAAGATATTTTTAGC+GGG + chr5_2:72300887-72300906 Msa0786750:intron 15.0%
!! AAAAAAACAAACTGAAAAAT+TGG - chr5_2:72301261-72301280 None:intergenic 15.0%
!! ATAGAATAAATAACAATAAG+AGG - chr5_2:72301544-72301563 None:intergenic 15.0%
!! AAGAAAAAAAAAAACACAAA+GGG - chr5_2:72302094-72302113 None:intergenic 15.0%
!! CAAAAGAAAAAGAAAATTAA+GGG + chr5_2:72302548-72302567 Msa0786750:intron 15.0%
!!! AATTTTTTTAGGTTTCTTTT+TGG - chr5_2:72302680-72302699 None:intergenic 15.0%
!!! TTTTTTTCTTAGTATATTGT+GGG + chr5_2:72303045-72303064 Msa0786750:intron 15.0%
!!! ATGAAATTTTTAATTAGACA+AGG + chr5_2:72303130-72303149 Msa0786750:intron 15.0%
!! AAATCAAATGATAAAAAAAG+TGG + chr5_2:72304298-72304317 Msa0786750:intron 15.0%
!! TATAATACTAGAGAATTAAA+TGG + chr5_2:72304569-72304588 Msa0786750:intron 15.0%
!!! TATTTTTTTTAACTGTTAAC+AGG + chr5_2:72304700-72304719 Msa0786750:intron 15.0%
!!! ATAAACAAAAACCTTTTGTT+GGG + chr5_2:72298782-72298801 Msa0786750:CDS 20.0%
!! TCAGTTAATCAAATAAAAAG+AGG - chr5_2:72299082-72299101 None:intergenic 20.0%
!! TTGAAGATTAATATGAAAAG+GGG - chr5_2:72299144-72299163 None:intergenic 20.0%
!! CTTGAAGATTAATATGAAAA+GGG - chr5_2:72299145-72299164 None:intergenic 20.0%
!! ACTTGAAGATTAATATGAAA+AGG - chr5_2:72299146-72299165 None:intergenic 20.0%
!!! TAAACTTTTACAATTCATCT+TGG - chr5_2:72299708-72299727 None:intergenic 20.0%
!! GAAAATTTAAAAAGGATTGA+AGG + chr5_2:72299805-72299824 Msa0786750:intron 20.0%
!!! CATATATTATTTTTGTGTGA+AGG + chr5_2:72300251-72300270 Msa0786750:intron 20.0%
!! CCAATATGAAATTAAAAACA+AGG - chr5_2:72300812-72300831 None:intergenic 20.0%
!!! CCTTGTTTTTAATTTCATAT+TGG + chr5_2:72300809-72300828 Msa0786750:intron 20.0%
!!! GTTATATTTTAGTTTTTGGA+AGG - chr5_2:72301065-72301084 None:intergenic 20.0%
!!! ACATTCCATAATTTTAAACA+GGG - chr5_2:72301387-72301406 None:intergenic 20.0%
!!! AACATTCCATAATTTTAAAC+AGG - chr5_2:72301388-72301407 None:intergenic 20.0%
!!! TTCCTTCAATAATTTTCTAA+GGG + chr5_2:72301423-72301442 Msa0786750:intron 20.0%
!!! TTTTTTATACTCACGTTAAT+AGG + chr5_2:72301460-72301479 Msa0786750:intron 20.0%
!!! TACAAATTGATCCATTTTAA+TGG - chr5_2:72301591-72301610 None:intergenic 20.0%
!!! TAAAATTTTCTCTAAAAGCT+TGG + chr5_2:72302058-72302077 Msa0786750:intron 20.0%
!! GAAGAAAAAAAAAAACACAA+AGG - chr5_2:72302095-72302114 None:intergenic 20.0%
!! AAGACTTCAATTATTATTGA+AGG - chr5_2:72302459-72302478 None:intergenic 20.0%
!! TTCAGAAAAACACAATAAAT+GGG + chr5_2:72302477-72302496 Msa0786750:intron 20.0%
!! GCAAAAGAAAAAGAAAATTA+AGG + chr5_2:72302547-72302566 Msa0786750:intron 20.0%
!!! CATTGCTTGTATTTTATAAA+CGG + chr5_2:72302870-72302889 Msa0786750:intron 20.0%
!! CACAATATACTAAGAAAAAA+AGG - chr5_2:72303046-72303065 None:intergenic 20.0%
!!! CTTTTTTTCTTAGTATATTG+TGG + chr5_2:72303044-72303063 Msa0786750:intron 20.0%
!!! TTTTTTCTTAGTATATTGTG+GGG + chr5_2:72303046-72303065 Msa0786750:intron 20.0%
!! ATTCATAAGAAGATTTGATT+CGG - chr5_2:72304185-72304204 None:intergenic 20.0%
!!! TAGATGATACATTAGTTTAT+AGG - chr5_2:72304246-72304265 None:intergenic 20.0%
!! ATACACACTAAAAATTCATA+TGG + chr5_2:72304486-72304505 Msa0786750:intron 20.0%
!! ACTAAAAATTCATATGGATT+AGG + chr5_2:72304492-72304511 Msa0786750:intron 20.0%
!!! ATTACATTTTTGTCAGAAAA+AGG - chr5_2:72305228-72305247 None:intergenic 20.0%
!!! CAACAAAAGGTTTTTGTTTA+TGG - chr5_2:72298783-72298802 None:intergenic 25.0%
!! CATAAACAAAAACCTTTTGT+TGG + chr5_2:72298781-72298800 Msa0786750:CDS 25.0%
! GTTAATTTATGTGTGACAAA+GGG - chr5_2:72299326-72299345 None:intergenic 25.0%
! TGTTAATTTATGTGTGACAA+AGG - chr5_2:72299327-72299346 None:intergenic 25.0%
! ATTTCAATAACCTTGAATTC+AGG + chr5_2:72299464-72299483 Msa0786750:intron 25.0%
!!! ATCTTGGTTTTACCTAAATT+TGG - chr5_2:72299692-72299711 None:intergenic 25.0%
!! TTTTCAAATTATTATCGGTG+TGG + chr5_2:72299982-72300001 Msa0786750:intron 25.0%
! AAACAAGATTGGATATTCAA+AGG - chr5_2:72300053-72300072 None:intergenic 25.0%
! TAAGAAAGTCAAAACAAGAT+TGG - chr5_2:72300064-72300083 None:intergenic 25.0%
!! ACAAATTTTTCACATAAGCT+AGG - chr5_2:72300128-72300147 None:intergenic 25.0%
!! TAACATAACCCTATTTTACT+TGG + chr5_2:72300442-72300461 Msa0786750:intron 25.0%
! TAACTTCCTCATTTAGATAT+CGG + chr5_2:72300682-72300701 Msa0786750:intron 25.0%
!! TTTCTACTCTTTTTCCTTTT+AGG - chr5_2:72300950-72300969 None:intergenic 25.0%
! AAACAAACTGAAAAATTGGA+CGG - chr5_2:72301257-72301276 None:intergenic 25.0%
! CAAGAATTTAGTGAAAGTAA+TGG - chr5_2:72301332-72301351 None:intergenic 25.0%
! AATTCTTGCTAAAACTTGTA+AGG + chr5_2:72301344-72301363 Msa0786750:intron 25.0%
!! CTTCCTTCAATAATTTTCTA+AGG + chr5_2:72301422-72301441 Msa0786750:intron 25.0%
! AACCCTTAGAAAATTATTGA+AGG - chr5_2:72301428-72301447 None:intergenic 25.0%
! TAGAAGATTAAGCTAAACTA+TGG - chr5_2:72301517-72301536 None:intergenic 25.0%
! GAGTAAAAATAAATCAGACA+AGG - chr5_2:72301667-72301686 None:intergenic 25.0%
!!! ATGTTCTAAAGAAATTGAAG+CGG + chr5_2:72301816-72301835 Msa0786750:CDS 25.0%
! ATGATTGTTAAATCATCCAT+AGG - chr5_2:72301901-72301920 None:intergenic 25.0%
! TGAAACCTTAATGAATGAAA+AGG + chr5_2:72302366-72302385 Msa0786750:intron 25.0%
! GAAACCTTAATGAATGAAAA+GGG + chr5_2:72302367-72302386 Msa0786750:intron 25.0%
! AAACCTTAATGAATGAAAAG+GGG + chr5_2:72302368-72302387 Msa0786750:intron 25.0%
! CTTCAGAAAAACACAATAAA+TGG + chr5_2:72302476-72302495 Msa0786750:intron 25.0%
!!! TGGAAAATTTTCTAGCAAAA+AGG - chr5_2:72302660-72302679 None:intergenic 25.0%
! ATACAAGCAATGTAGTAATA+AGG - chr5_2:72302862-72302881 None:intergenic 25.0%
! TAGACAAGGAATATTTGTAT+AGG + chr5_2:72303144-72303163 Msa0786750:intron 25.0%
! AGACAAGGAATATTTGTATA+GGG + chr5_2:72303145-72303164 Msa0786750:intron 25.0%
! AAAGCAATAAAGAACCATAA+AGG - chr5_2:72303191-72303210 None:intergenic 25.0%
! TTTATGGTTCTTTATTGCTT+TGG + chr5_2:72303190-72303209 Msa0786750:intron 25.0%
!!! AAAATGCTGTTTTACTCAAT+AGG + chr5_2:72303223-72303242 Msa0786750:intron 25.0%
! TTCAACTATAACAGAAATAG+CGG + chr5_2:72303307-72303326 Msa0786750:CDS 25.0%
!!! AGAAGGTATGCTTTAATTTT+TGG + chr5_2:72303468-72303487 Msa0786750:intron 25.0%
! TACAAAATGCTATCAAATAG+AGG + chr5_2:72303639-72303658 Msa0786750:intron 25.0%
!! TTGTTGATTGTGGAAAATAA+CGG - chr5_2:72303710-72303729 None:intergenic 25.0%
!!! AAATTGTTTGTTGTAGCTAA+AGG + chr5_2:72303785-72303804 Msa0786750:intron 25.0%
! GAGTACGAAGAAAAAATTAT+GGG + chr5_2:72303807-72303826 Msa0786750:intron 25.0%
!!! TGAATTGGAATATCGATTTT+CGG + chr5_2:72304155-72304174 Msa0786750:intron 25.0%
! TTCATAAGAAGATTTGATTC+GGG - chr5_2:72304184-72304203 None:intergenic 25.0%
!!! TGTTGCTTGTTTTTACTTAA+TGG - chr5_2:72304216-72304235 None:intergenic 25.0%
! AGGATTTATCATAATGAATC+AGG + chr5_2:72304414-72304433 Msa0786750:intron 25.0%
! AATTAAATGGAAACTTCAGA+TGG + chr5_2:72304582-72304601 Msa0786750:intron 25.0%
!! TATGAATTATGAGTTCGTTT+TGG + chr5_2:72304618-72304637 Msa0786750:intron 25.0%
AAAGTTTCAAACCCAACAAA+AGG - chr5_2:72298796-72298815 None:intergenic 30.0%
TGAAAACACAGAGAATAGTT+TGG + chr5_2:72298966-72298985 Msa0786750:CDS 30.0%
GGAAAAGTTAATTACAGTCT+CGG - chr5_2:72299061-72299080 None:intergenic 30.0%
TTTGTAATTCAAATGTGCTG+TGG + chr5_2:72299201-72299220 Msa0786750:intron 30.0%
TTGTAATTCAAATGTGCTGT+GGG + chr5_2:72299202-72299221 Msa0786750:intron 30.0%
AAATTAACACTTACGTGATC+TGG + chr5_2:72299338-72299357 Msa0786750:intron 30.0%
GTTACTTAATTCACGTGAAT+TGG - chr5_2:72299592-72299611 None:intergenic 30.0%
TGCAACACATTCAAAACTTA+GGG - chr5_2:72299646-72299665 None:intergenic 30.0%
!!! AAGGGTATTTTTGTCAAATC+TGG + chr5_2:72299824-72299843 Msa0786750:intron 30.0%
!! AGGGTATTTTTGTCAAATCT+GGG + chr5_2:72299825-72299844 Msa0786750:intron 30.0%
TTGTAATTCAAATGCGTTGT+GGG + chr5_2:72299903-72299922 Msa0786750:intron 30.0%
ATGAATCATATTAGAACCCA+AGG - chr5_2:72300470-72300489 None:intergenic 30.0%
TTTATTTCGGTGAATTACAG+TGG + chr5_2:72300531-72300550 Msa0786750:intron 30.0%
TTATTTCGGTGAATTACAGT+GGG + chr5_2:72300532-72300551 Msa0786750:intron 30.0%
GGGTCATACAAATCATATAT+TGG + chr5_2:72300622-72300641 Msa0786750:intron 30.0%
AACTTCCTCATTTAGATATC+GGG + chr5_2:72300683-72300702 Msa0786750:intron 30.0%
ATGAAATTAAAAACAAGGCG+AGG - chr5_2:72300807-72300826 None:intergenic 30.0%
!! TTTTCCTTTTAGGAACCTAA+CGG - chr5_2:72300940-72300959 None:intergenic 30.0%
CAAAATATATCTCTCTCAGA+AGG - chr5_2:72301144-72301163 None:intergenic 30.0%
! TGAGAGAGATATATTTTGTG+AGG + chr5_2:72301146-72301165 Msa0786750:intron 30.0%
! GAGAGAGATATATTTTGTGA+GGG + chr5_2:72301147-72301166 Msa0786750:intron 30.0%
! TCATGCCCTGTTTAAAATTA+TGG + chr5_2:72301379-72301398 Msa0786750:intron 30.0%
TAATAGGTTTCTTCTTGGAA+AGG + chr5_2:72301476-72301495 Msa0786750:intron 30.0%
AATAGGTTTCTTCTTGGAAA+GGG + chr5_2:72301477-72301496 Msa0786750:intron 30.0%
GTTCTTGCTTTCCATTAAAA+TGG + chr5_2:72301577-72301596 Msa0786750:intron 30.0%
!! AATTTCTTTAGAACATTCCG+AGG - chr5_2:72301812-72301831 None:intergenic 30.0%
GGATGATTTAACAATCATGA+AGG + chr5_2:72301903-72301922 Msa0786750:CDS 30.0%
GATAGAACAAACCAAAATGA+GGG - chr5_2:72301933-72301952 None:intergenic 30.0%
AGATAGAACAAACCAAAATG+AGG - chr5_2:72301934-72301953 None:intergenic 30.0%
GTACTGAAGGGAAAAATATA+AGG - chr5_2:72302011-72302030 None:intergenic 30.0%
TGCAGATTAAGATTGAAACA+CGG - chr5_2:72302033-72302052 None:intergenic 30.0%
! TTTTCTTCCTTATCTTTGTC+TGG + chr5_2:72302107-72302126 Msa0786750:intron 30.0%
TCATACCTTATACTGTTAGA+AGG + chr5_2:72302220-72302239 Msa0786750:intron 30.0%
TGAATTAGTTCAATCACTCT+TGG + chr5_2:72302252-72302271 Msa0786750:intron 30.0%
CTCATTATGATTCAACAAAC+TGG - chr5_2:72302796-72302815 None:intergenic 30.0%
!! CAGTTTGTTGAATCATAATG+AGG + chr5_2:72302794-72302813 Msa0786750:intron 30.0%
ATGCACTGAACAAAAGAAAT+AGG + chr5_2:72302831-72302850 Msa0786750:intron 30.0%
!! GGAAAAAAAAAAGTGTCACT+GGG + chr5_2:72303015-72303034 Msa0786750:intron 30.0%
ATTTGTATAGGGATGTAGAT+CGG + chr5_2:72303156-72303175 Msa0786750:intron 30.0%
ATAGGAAACACTAAGAGTTA+AGG + chr5_2:72303241-72303260 Msa0786750:intron 30.0%
!! AGGTATGCTTTAATTTTTGG+CGG + chr5_2:72303471-72303490 Msa0786750:intron 30.0%
CAACTCTTGAAAAACTGTTT+CGG + chr5_2:72303507-72303526 Msa0786750:intron 30.0%
TATTTAACAACATTGGCCAA+GGG - chr5_2:72303541-72303560 None:intergenic 30.0%
TAACCGCTATTTAACAACAT+TGG - chr5_2:72303548-72303567 None:intergenic 30.0%
TTGTTAAATAGCGGTTATAG+TGG + chr5_2:72303551-72303570 Msa0786750:intron 30.0%
CTATCAAATAGAGGTTATAG+CGG + chr5_2:72303648-72303667 Msa0786750:intron 30.0%
GGAGTACGAAGAAAAAATTA+TGG + chr5_2:72303806-72303825 Msa0786750:intron 30.0%
ATTAACAAAGCTTCAAGCAA+GGG - chr5_2:72304118-72304137 None:intergenic 30.0%
TATTAACAAAGCTTCAAGCA+AGG - chr5_2:72304119-72304138 None:intergenic 30.0%
!! GCTTGAAGCTTTGTTAATAA+CGG + chr5_2:72304120-72304139 Msa0786750:intron 30.0%
CGGTTATCAAAATTGTGAAT+TGG + chr5_2:72304140-72304159 Msa0786750:intron 30.0%
CAAATGATAAAAAAAGTGGC+TGG + chr5_2:72304302-72304321 Msa0786750:intron 30.0%
TACAAAGTTGACAAAAAACG+TGG + chr5_2:72304328-72304347 Msa0786750:intron 30.0%
GATACACATGTATCATAAGA+TGG + chr5_2:72304536-72304555 Msa0786750:intron 30.0%
! TTATCCACATTTTCTTCAGT+GGG - chr5_2:72304792-72304811 None:intergenic 30.0%
! TTTATCCACATTTTCTTCAG+TGG - chr5_2:72304793-72304812 None:intergenic 30.0%
ATGTTTGGTTGTTATCATCA+GGG - chr5_2:72305068-72305087 None:intergenic 30.0%
! TTTGCTATCTTGTACATGTT+TGG - chr5_2:72305083-72305102 None:intergenic 30.0%
TACACACTCAATCAACAAAA+TGG - chr5_2:72305136-72305155 None:intergenic 30.0%
TGTGTTATAATGACCTTGAA+AGG + chr5_2:72305197-72305216 Msa0786750:three_prime_UTR 30.0%
GTGTTATAATGACCTTGAAA+GGG + chr5_2:72305198-72305217 Msa0786750:three_prime_UTR 30.0%
!! GGTGTAACTAGATGTTTTTG+GGG - chr5_2:72299266-72299285 None:intergenic 35.0%
! GGGTGTAACTAGATGTTTTT+GGG - chr5_2:72299267-72299286 None:intergenic 35.0%
! TGGGTGTAACTAGATGTTTT+TGG - chr5_2:72299268-72299287 None:intergenic 35.0%
AACGTGAACTCAATTTACGT+TGG + chr5_2:72299388-72299407 Msa0786750:intron 35.0%
TCATAGCATACCTGAATTCA+AGG - chr5_2:72299477-72299496 None:intergenic 35.0%
AATGGATCAGTACGAAATCT+AGG - chr5_2:72299528-72299547 None:intergenic 35.0%
!!! GTTATTTTTCTTCTGCACCT+TGG - chr5_2:72299561-72299580 None:intergenic 35.0%
CTGCAACACATTCAAAACTT+AGG - chr5_2:72299647-72299666 None:intergenic 35.0%
TGGGTGTAACTGAAATTTCA+TGG + chr5_2:72299844-72299863 Msa0786750:intron 35.0%
GGGTGTAACTGAAATTTCAT+GGG + chr5_2:72299845-72299864 Msa0786750:intron 35.0%
GGTGTAACTGAAATTTCATG+GGG + chr5_2:72299846-72299865 Msa0786750:intron 35.0%
CACAACGCATTTGAATTACA+AGG - chr5_2:72299904-72299923 None:intergenic 35.0%
CTTGTAATTCAAATGCGTTG+TGG + chr5_2:72299902-72299921 Msa0786750:intron 35.0%
ATAAGCTAGGTAACATTCGA+GGG - chr5_2:72300115-72300134 None:intergenic 35.0%
!!! TATTTTTTTGGTGACAGCTG+AGG + chr5_2:72300148-72300167 Msa0786750:intron 35.0%
! ATTCCATTTTCCCAGTTGTT+GGG - chr5_2:72300203-72300222 None:intergenic 35.0%
! TATTCCATTTTCCCAGTTGT+TGG - chr5_2:72300204-72300223 None:intergenic 35.0%
TGGGAAAATGGAATACAAGT+AGG + chr5_2:72300209-72300228 Msa0786750:intron 35.0%
AGGGAAAAGTAGTAACACTT+TGG + chr5_2:72300271-72300290 Msa0786750:intron 35.0%
ATTCACAGGAGATACAGTAA+TGG - chr5_2:72300393-72300412 None:intergenic 35.0%
CATGCTTACTTGAAATTCAC+AGG - chr5_2:72300407-72300426 None:intergenic 35.0%
! CTGTGAATTTCAAGTAAGCA+TGG + chr5_2:72300405-72300424 Msa0786750:intron 35.0%
AGGAAATAATCCTTCTTCTG+TGG - chr5_2:72300712-72300731 None:intergenic 35.0%
AAGATGACTGCTTAGTTGTT+TGG + chr5_2:72300972-72300991 Msa0786750:intron 35.0%
AATATATCTCTCTCAGAAGG+AGG - chr5_2:72301141-72301160 None:intergenic 35.0%
CTGAAAAATTGGACGGAAAA+AGG - chr5_2:72301250-72301269 None:intergenic 35.0%
CACGTTAATAGGTTTCTTCT+TGG + chr5_2:72301471-72301490 Msa0786750:intron 35.0%
AGCTAAACTATGGTATTCAG+CGG - chr5_2:72301507-72301526 None:intergenic 35.0%
AAGCTGTGAATTCCTTAAGT+GGG + chr5_2:72301728-72301747 Msa0786750:CDS 35.0%
! GGGAATGGTTCTACAAAATT+AGG + chr5_2:72301748-72301767 Msa0786750:CDS 35.0%
ATTTCTTTGCGAAATGCTCT+TGG + chr5_2:72301847-72301866 Msa0786750:CDS 35.0%
AATGCATTCAGCTTTCATGA+TGG + chr5_2:72301967-72301986 Msa0786750:intron 35.0%
TTCCTTATCTTTGTCTGGTT+TGG + chr5_2:72302112-72302131 Msa0786750:intron 35.0%
ACACATCAAGAAGCAACAAA+AGG - chr5_2:72302151-72302170 None:intergenic 35.0%
GAAAGTAAAGACTAGAGAGA+TGG - chr5_2:72302199-72302218 None:intergenic 35.0%
ACGTTCCTTCTAACAGTATA+AGG - chr5_2:72302228-72302247 None:intergenic 35.0%
GACGATTGAATTGTTTGTCT+AGG - chr5_2:72302281-72302300 None:intergenic 35.0%
ATTCAATCGTCTTCATTGAC+TGG + chr5_2:72302290-72302309 Msa0786750:intron 35.0%
!! TATCCAAGCTTAGCTTTGAT+TGG + chr5_2:72302631-72302650 Msa0786750:intron 35.0%
TATCCAATCAAAGCTAAGCT+TGG - chr5_2:72302637-72302656 None:intergenic 35.0%
! AACGGTTCAATTTTTCCCTT+CGG + chr5_2:72302888-72302907 Msa0786750:intron 35.0%
! GTTCTCTTGTTTCGAGAATA+AGG + chr5_2:72302984-72303003 Msa0786750:intron 35.0%
TTTCGAGAATAAGGAAGTGA+AGG + chr5_2:72302993-72303012 Msa0786750:intron 35.0%
TTCGAGAATAAGGAAGTGAA+GGG + chr5_2:72302994-72303013 Msa0786750:intron 35.0%
!! GGGAAAAAAAAAAGTGTCAC+TGG + chr5_2:72303014-72303033 Msa0786750:intron 35.0%
AACACTAAGAGTTAAGGATG+AGG + chr5_2:72303247-72303266 Msa0786750:CDS 35.0%
CTTATACTATGGATGAGCAA+CGG + chr5_2:72303378-72303397 Msa0786750:CDS 35.0%
CTATTTAACAACATTGGCCA+AGG - chr5_2:72303542-72303561 None:intergenic 35.0%
TGGCCAATGTTGTTAAATAG+CGG + chr5_2:72303542-72303561 Msa0786750:intron 35.0%
! GATTTGTTCAAATTCCGCTA+CGG - chr5_2:72303592-72303611 None:intergenic 35.0%
! AGCTACATTGTTGTTGATTG+TGG - chr5_2:72303720-72303739 None:intergenic 35.0%
CTATTAAGGAGGCAAATATG+TGG + chr5_2:72303874-72303893 Msa0786750:CDS 35.0%
! TGCTAAAAGCACAACTTCAA+AGG + chr5_2:72304072-72304091 Msa0786750:CDS 35.0%
ATGAATCACCATCAATCCTT+TGG - chr5_2:72304363-72304382 None:intergenic 35.0%
TCTTGAATCCTGATTCATTG+TGG - chr5_2:72304445-72304464 None:intergenic 35.0%
CATGTTTGGTTGTTATCATC+AGG - chr5_2:72305069-72305088 None:intergenic 35.0%
CGTAGATCAACAACTCTTGT+CGG - chr5_2:72298826-72298845 None:intergenic 40.0%
AGTTGTTGATCTACGCCTTA+TGG + chr5_2:72298831-72298850 Msa0786750:CDS 40.0%
TTCTGGTAGAAATCTGTTGC+AGG + chr5_2:72299017-72299036 Msa0786750:CDS 40.0%
TCTGGTAGAAATCTGTTGCA+GGG + chr5_2:72299018-72299037 Msa0786750:CDS 40.0%
ATCCATTCTAAGTGCAACCA+AGG + chr5_2:72299541-72299560 Msa0786750:intron 40.0%
GAATGCAGAAGAAGATGAAG+AGG + chr5_2:72299769-72299788 Msa0786750:intron 40.0%
CATAAGCTAGGTAACATTCG+AGG - chr5_2:72300116-72300135 None:intergenic 40.0%
AAGAAATGAGCCAACTGTCA+AGG + chr5_2:72300340-72300359 Msa0786750:CDS 40.0%
AGAAATGAGCCAACTGTCAA+GGG + chr5_2:72300341-72300360 Msa0786750:CDS 40.0%
AGAATTGTTCCCTTGACAGT+TGG - chr5_2:72300353-72300372 None:intergenic 40.0%
! CCAAGGCACCAAGTAAAATA+GGG - chr5_2:72300453-72300472 None:intergenic 40.0%
!!! CCTATTTTACTTGGTGCCTT+GGG + chr5_2:72300451-72300470 Msa0786750:intron 40.0%
ATGCAGCATCCATCATACTT+CGG - chr5_2:72300561-72300580 None:intergenic 40.0%
GAAGGATTATTTCCTATGCG+CGG + chr5_2:72300717-72300736 Msa0786750:CDS 40.0%
AAAAACAAGGCGAGGAAAGT+CGG - chr5_2:72300799-72300818 None:intergenic 40.0%
! TAGGAACCTAACGGAGTTTT+TGG - chr5_2:72300931-72300950 None:intergenic 40.0%
AACTCCGTTAGGTTCCTAAA+AGG + chr5_2:72300933-72300952 Msa0786750:intron 40.0%
TGACTGCTTAGTTGTTTGGT+AGG + chr5_2:72300976-72300995 Msa0786750:intron 40.0%
TTGGTAGGAGAGGAAACATA+TGG + chr5_2:72300991-72301010 Msa0786750:intron 40.0%
GAGGAAGGAAAAATGCTTTG+TGG - chr5_2:72301173-72301192 None:intergenic 40.0%
GCTAAACTATGGTATTCAGC+GGG - chr5_2:72301506-72301525 None:intergenic 40.0%
!!! AGCTTTTAGAACCAACTGAG+TGG - chr5_2:72301701-72301720 None:intergenic 40.0%
GAAGCTGTGAATTCCTTAAG+TGG + chr5_2:72301727-72301746 Msa0786750:CDS 40.0%
GTGAATTCCTTAAGTGGGAA+TGG + chr5_2:72301733-72301752 Msa0786750:CDS 40.0%
TGTAGAACCATTCCCACTTA+AGG - chr5_2:72301743-72301762 None:intergenic 40.0%
CTCTTGGAATGATGCCAAAT+AGG + chr5_2:72301863-72301882 Msa0786750:CDS 40.0%
ATGCCAAATAGGACTACTGA+TGG + chr5_2:72301874-72301893 Msa0786750:CDS 40.0%
!! ATGAAGGTACACCCTCATTT+TGG + chr5_2:72301919-72301938 Msa0786750:intron 40.0%
! GATTGAAACACGGTACTGAA+GGG - chr5_2:72302023-72302042 None:intergenic 40.0%
! AGATTGAAACACGGTACTGA+AGG - chr5_2:72302024-72302043 None:intergenic 40.0%
GTCCAAACCAGACAAAGATA+AGG - chr5_2:72302117-72302136 None:intergenic 40.0%
ATTGACTGGAGGTTTAAGAG+AGG + chr5_2:72302304-72302323 Msa0786750:intron 40.0%
CTTAATGAATGAAAAGGGGC+CGG + chr5_2:72302372-72302391 Msa0786750:intron 40.0%
TATACAGTCTCAGGTCTACA+TGG + chr5_2:72302397-72302416 Msa0786750:intron 40.0%
CAATGCATCGAATTGAACAG+TGG + chr5_2:72302741-72302760 Msa0786750:intron 40.0%
AACTGGATTCAGCCATAATG+TGG - chr5_2:72302779-72302798 None:intergenic 40.0%
!! CTACAAACTCTAAAGCCGAA+GGG - chr5_2:72302906-72302925 None:intergenic 40.0%
!! TCTACAAACTCTAAAGCCGA+AGG - chr5_2:72302907-72302926 None:intergenic 40.0%
!! TTCGGCTTTAGAGTTTGTAG+AGG + chr5_2:72302906-72302925 Msa0786750:intron 40.0%
AACAAACCAGCGATACAAAG+GGG - chr5_2:72302932-72302951 None:intergenic 40.0%
CAACAAACCAGCGATACAAA+GGG - chr5_2:72302933-72302952 None:intergenic 40.0%
GGATGAGGAGCTACAAAATT+TGG + chr5_2:72303262-72303281 Msa0786750:CDS 40.0%
! AAAATTTGGCTCGAGACCTT+CGG + chr5_2:72303276-72303295 Msa0786750:CDS 40.0%
! AGCATCTGCTGCTTATACTA+TGG + chr5_2:72303367-72303386 Msa0786750:CDS 40.0%
! AAAAGATTCTGAGAAGCAGC+AGG + chr5_2:72303433-72303452 Msa0786750:CDS 40.0%
AAATATGTGGCGTACTGAAC+TGG + chr5_2:72303887-72303906 Msa0786750:CDS 40.0%
AATATGTGGCGTACTGAACT+GGG + chr5_2:72303888-72303907 Msa0786750:CDS 40.0%
AGAAGCAACTGTAGTAAGAG+CGG + chr5_2:72303938-72303957 Msa0786750:CDS 40.0%
CTTTATCCTAGCTTCAGCAT+TGG - chr5_2:72303988-72304007 None:intergenic 40.0%
CAATGCTGAAGCTAGGATAA+AGG + chr5_2:72303986-72304005 Msa0786750:CDS 40.0%
AAGTTGACAAAAAACGTGGC+AGG + chr5_2:72304332-72304351 Msa0786750:intron 40.0%
GGTGATTCATCAGAGTGAAT+TGG + chr5_2:72304373-72304392 Msa0786750:intron 40.0%
TGTATGCCAGCTATGAAATG+TGG + chr5_2:72304648-72304667 Msa0786750:intron 40.0%
TGATCCCACTGAAGAAAATG+TGG + chr5_2:72304785-72304804 Msa0786750:CDS 40.0%
!! GGTTTGCTCTAGAAACACTT+AGG - chr5_2:72304821-72304840 None:intergenic 40.0%
TGTGAACTACATTCTCTGCA+GGG - chr5_2:72304848-72304867 None:intergenic 40.0%
ATGTGAACTACATTCTCTGC+AGG - chr5_2:72304849-72304868 None:intergenic 40.0%
TGCAGAGAATGTAGTTCACA+TGG + chr5_2:72304848-72304867 Msa0786750:CDS 40.0%
GTAAACAACATTCAGCCAGT+TGG + chr5_2:72304882-72304901 Msa0786750:CDS 40.0%
ATCAATCATCACCACGAACA+AGG + chr5_2:72305023-72305042 Msa0786750:CDS 40.0%
AAGAGTTTGATCCTTGTTCG+TGG - chr5_2:72305037-72305056 None:intergenic 40.0%
!! GAAAAAGGTACTCCCTTTCA+AGG - chr5_2:72305213-72305232 None:intergenic 40.0%
GTCTCGGATCTCTTAAGAAG+TGG - chr5_2:72299045-72299064 None:intergenic 45.0%
TGTGTGACAAAGGGCAACTT+TGG - chr5_2:72299317-72299336 None:intergenic 45.0%
CACCTTGGTTGCACTTAGAA+TGG - chr5_2:72299546-72299565 None:intergenic 45.0%
TCACGTACGCTGCCAAATTT+AGG + chr5_2:72299677-72299696 Msa0786750:intron 45.0%
TGCAGAAGAAGATGAAGAGG+AGG + chr5_2:72299772-72299791 Msa0786750:intron 45.0%
!! ATGAAGCACCGACACAAACA+GGG - chr5_2:72300020-72300039 None:intergenic 45.0%
!! TATGAAGCACCGACACAAAC+AGG - chr5_2:72300021-72300040 None:intergenic 45.0%
! TTTGGTGACAGCTGAGGAAA+TGG + chr5_2:72300154-72300173 Msa0786750:intron 45.0%
TGAGGAAATGGAACGAACGT+TGG + chr5_2:72300166-72300185 Msa0786750:CDS 45.0%
GAGGAAATGGAACGAACGTT+GGG + chr5_2:72300167-72300186 Msa0786750:CDS 45.0%
TGATCTTGGACCCAACAACT+GGG + chr5_2:72300190-72300209 Msa0786750:CDS 45.0%
!!! CCCTATTTTACTTGGTGCCT+TGG + chr5_2:72300450-72300469 Msa0786750:intron 45.0%
! CCCAAGGCACCAAGTAAAAT+AGG - chr5_2:72300454-72300473 None:intergenic 45.0%
GGTGTCCCGATATCTAAATG+AGG - chr5_2:72300691-72300710 None:intergenic 45.0%
AAAACAAGGCGAGGAAAGTC+GGG - chr5_2:72300798-72300817 None:intergenic 45.0%
CTTGAGCCAAAAACTCCGTT+AGG + chr5_2:72300922-72300941 Msa0786750:intron 45.0%
GCTTAGTTGTTTGGTAGGAG+AGG + chr5_2:72300981-72301000 Msa0786750:intron 45.0%
TGTTACGGAACGCCAAATGA+CGG + chr5_2:72301199-72301218 Msa0786750:intron 45.0%
CGAAAAACTCCTCCGTCATT+TGG - chr5_2:72301214-72301233 None:intergenic 45.0%
GGACCATCAGTAGTCCTATT+TGG - chr5_2:72301880-72301899 None:intergenic 45.0%
TAGGACTACTGATGGTCCTA+TGG + chr5_2:72301882-72301901 Msa0786750:CDS 45.0%
! AGCTTTCATGATGGTGATGC+AGG + chr5_2:72301976-72301995 Msa0786750:intron 45.0%
! GCTTTCATGATGGTGATGCA+GGG + chr5_2:72301977-72301996 Msa0786750:intron 45.0%
!! TTGTCTGGTTTGGACTTTGC+TGG + chr5_2:72302122-72302141 Msa0786750:intron 45.0%
! CAATCGTCTTCATTGACTGG+AGG + chr5_2:72302293-72302312 Msa0786750:intron 45.0%
GGTTTAAGAGAGGCAAGGAT+AGG + chr5_2:72302314-72302333 Msa0786750:intron 45.0%
! CGGCCCCTTTTCATTCATTA+AGG - chr5_2:72302374-72302393 None:intergenic 45.0%
AGACCTGAGACTGTATATGC+CGG - chr5_2:72302394-72302413 None:intergenic 45.0%
AGGTCTACATGGTATCAGCT+AGG + chr5_2:72302408-72302427 Msa0786750:intron 45.0%
ATCGAATTGAACAGTGGCTG+TGG + chr5_2:72302747-72302766 Msa0786750:intron 45.0%
CCAACAAACCAGCGATACAA+AGG - chr5_2:72302934-72302953 None:intergenic 45.0%
!! CCTTTGTATCGCTGGTTTGT+TGG + chr5_2:72302931-72302950 Msa0786750:intron 45.0%
CTCTGACCTTCATACACTTC+TGG + chr5_2:72302956-72302975 Msa0786750:intron 45.0%
! CGCAAACCAGAAGTGTATGA+AGG - chr5_2:72302965-72302984 None:intergenic 45.0%
ATTGTGGGGCTTGAATCTAG+TGG + chr5_2:72303060-72303079 Msa0786750:intron 45.0%
AGGGATGTAGATCGGTATCT+TGG + chr5_2:72303164-72303183 Msa0786750:intron 45.0%
GGGATGTAGATCGGTATCTT+GGG + chr5_2:72303165-72303184 Msa0786750:intron 45.0%
ATCGGTATCTTGGGCCTTTA+TGG + chr5_2:72303174-72303193 Msa0786750:intron 45.0%
! AAATTTGGCTCGAGACCTTC+GGG + chr5_2:72303277-72303296 Msa0786750:CDS 45.0%
TGTTTCGGATGAATGACCCT+TGG + chr5_2:72303522-72303541 Msa0786750:intron 45.0%
AATAGCAGCATCTCTCTGGT+CGG - chr5_2:72303859-72303878 None:intergenic 45.0%
CCTTAATAGCAGCATCTCTC+TGG - chr5_2:72303863-72303882 None:intergenic 45.0%
CCAGAGAGATGCTGCTATTA+AGG + chr5_2:72303860-72303879 Msa0786750:intron 45.0%
GAGAGATGCTGCTATTAAGG+AGG + chr5_2:72303863-72303882 Msa0786750:intron 45.0%
TGTAGTAAGAGCGGAAGAGA+AGG + chr5_2:72303947-72303966 Msa0786750:CDS 45.0%
AGCTGTACAGAGAGAATCAG+TGG + chr5_2:72304010-72304029 Msa0786750:CDS 45.0%
AGTGGCAACAAAAGAGAAGC+AGG + chr5_2:72304028-72304047 Msa0786750:CDS 45.0%
AGGCTACACCAAAGGATTGA+TGG + chr5_2:72304352-72304371 Msa0786750:intron 45.0%
AGGATCGACCACAATGAATC+AGG + chr5_2:72304434-72304453 Msa0786750:intron 45.0%
GATGCTCCACATTTCATAGC+TGG - chr5_2:72304657-72304676 None:intergenic 45.0%
CTACATTCTCTGCAGGGATA+GGG - chr5_2:72304842-72304861 None:intergenic 45.0%
ACTACATTCTCTGCAGGGAT+AGG - chr5_2:72304843-72304862 None:intergenic 45.0%
! CTGGCTGAATGTTGTTTACC+TGG - chr5_2:72304881-72304900 None:intergenic 45.0%
CAACGAATGGAGCGATATTC+AGG + chr5_2:72304908-72304927 Msa0786750:CDS 45.0%
ATATTCAGGCTACAGAGGCA+AGG + chr5_2:72304922-72304941 Msa0786750:CDS 45.0%
AAGCTGCTTCCATCAGTTTC+TGG - chr5_2:72304975-72304994 None:intergenic 45.0%
AGAAACTGATGGAAGCAGCT+TGG + chr5_2:72304974-72304993 Msa0786750:CDS 45.0%
AAGCAGCTTGGATATTCCAG+TGG + chr5_2:72304986-72305005 Msa0786750:CDS 45.0%
! TCGTGGTGATGATTGATACC+TGG - chr5_2:72305020-72305039 None:intergenic 45.0%
GTTGTTATCATCAGGGCTGA+TGG - chr5_2:72305061-72305080 None:intergenic 45.0%
!!! TGTTTTTTTTTTTTTTTATA+TGG - chr5_2:72298724-72298743 None:intergenic 5.0%
!!! TTTATATTTTTATAATTTTC+GGG + chr5_2:72300602-72300621 Msa0786750:intron 5.0%
TCTACGCCTTATGGCTTCTC+CGG + chr5_2:72298840-72298859 Msa0786750:CDS 50.0%
!! AGAGTACCGGAGAAGCCATA+AGG - chr5_2:72298849-72298868 None:intergenic 50.0%
! GAGAGAGAGAGAGAGAGTAC+CGG - chr5_2:72298862-72298881 None:intergenic 50.0%
!! TGAAGCACCGACACAAACAG+GGG - chr5_2:72300019-72300038 None:intergenic 50.0%
GAACGAACGTTGGGTGATCT+TGG + chr5_2:72300176-72300195 Msa0786750:CDS 50.0%
GTGATCTTGGACCCAACAAC+TGG + chr5_2:72300189-72300208 Msa0786750:CDS 50.0%
GGACCCAACAACTGGGAAAA+TGG + chr5_2:72300197-72300216 Msa0786750:CDS 50.0%
!! AGTGGGCTACCGAAGTATGA+TGG + chr5_2:72300549-72300568 Msa0786750:intron 50.0%
TATCGGGACACCACAGAAGA+AGG + chr5_2:72300699-72300718 Msa0786750:CDS 50.0%
AAACAAGGCGAGGAAAGTCG+GGG - chr5_2:72300797-72300816 None:intergenic 50.0%
TCCTTCCTCGCTCACTGTTA+CGG + chr5_2:72301184-72301203 Msa0786750:intron 50.0%
TAGAACCAACTGAGTGGCAC+TGG - chr5_2:72301695-72301714 None:intergenic 50.0%
ACATTCCGAGGCTGTTGAGT+TGG - chr5_2:72301800-72301819 None:intergenic 50.0%
CTGGAGGTTTAAGAGAGGCA+AGG + chr5_2:72302309-72302328 Msa0786750:intron 50.0%
ATTGAACAGTGGCTGTGGCA+AGG + chr5_2:72302752-72302771 Msa0786750:intron 50.0%
CTGTGGCAAGGTCCACATTA+TGG + chr5_2:72302764-72302783 Msa0786750:intron 50.0%
GGGCTTGAATCTAGTGGCAA+AGG + chr5_2:72303066-72303085 Msa0786750:intron 50.0%
TAGTTGAATCACGTGCCCGA+AGG - chr5_2:72303295-72303314 None:intergenic 50.0%
! AGATTCTGAGAAGCAGCAGG+AGG + chr5_2:72303436-72303455 Msa0786750:CDS 50.0%
GCTATAGCGCTTTACCGTAG+CGG + chr5_2:72303575-72303594 Msa0786750:intron 50.0%
TAAGAGCGGAAGAGAAGGTC+AGG + chr5_2:72303952-72303971 Msa0786750:CDS 50.0%
AAGAGCGGAAGAGAAGGTCA+GGG + chr5_2:72303953-72303972 Msa0786750:CDS 50.0%
CAACTTCAAAGGTCAGCGTC+TGG + chr5_2:72304083-72304102 Msa0786750:intron 50.0%
GGACTCGATCGTAGTGTATC+AGG + chr5_2:72304394-72304413 Msa0786750:intron 50.0%
AGTTCACATGGCAACAGACC+AGG + chr5_2:72304860-72304879 Msa0786750:CDS 50.0%
!! AGCCAGTTGGTGACAACGAA+TGG + chr5_2:72304895-72304914 Msa0786750:CDS 50.0%
CTCCATTCGTTGTCACCAAC+TGG - chr5_2:72304900-72304919 None:intergenic 50.0%
GAGCGATATTCAGGCTACAG+AGG + chr5_2:72304917-72304936 Msa0786750:CDS 50.0%
AGGCAAGGATAGCCGATGTA+AGG + chr5_2:72304937-72304956 Msa0786750:CDS 50.0%
GGCAAGGATAGCCGATGTAA+GGG + chr5_2:72304938-72304957 Msa0786750:CDS 50.0%
TGCTGCGACTTCCCTTACAT+CGG - chr5_2:72304952-72304971 None:intergenic 50.0%
GGTGATGATTGATACCTGGC+TGG - chr5_2:72305016-72305035 None:intergenic 50.0%
! CGTCAGCTAGCTTCTGCTTC+TGG + chr5_2:72299000-72299019 Msa0786750:CDS 55.0%
TCCGTAACAGTGAGCGAGGA+AGG - chr5_2:72301188-72301207 None:intergenic 55.0%
TACGGAACGCCAAATGACGG+AGG + chr5_2:72301202-72301221 Msa0786750:intron 55.0%
! TCACACCAGTGCCACTCAGT+TGG + chr5_2:72301687-72301706 Msa0786750:intron 55.0%
TGCAGCCAACTCAACAGCCT+CGG + chr5_2:72301792-72301811 Msa0786750:CDS 55.0%
TAGAGGCCCCTTTGTATCGC+TGG + chr5_2:72302923-72302942 Msa0786750:intron 55.0%
! GCAGGAGGTGTATGCACAGA+AGG + chr5_2:72303451-72303470 Msa0786750:CDS 55.0%
AGAGAAGGTCAGGGTTGCTG+AGG + chr5_2:72303962-72303981 Msa0786750:CDS 55.0%
CTGAGGCCAATGCTGAAGCT+AGG + chr5_2:72303979-72303998 Msa0786750:CDS 55.0%
AACGTGGCAGGCTACACCAA+AGG + chr5_2:72304344-72304363 Msa0786750:intron 55.0%
GTCGCAGCACCAGAAACTGA+TGG + chr5_2:72304963-72304982 Msa0786750:CDS 55.0%
! ATTCCAGTGGTTAGCCAGCC+AGG + chr5_2:72304999-72305018 Msa0786750:CDS 55.0%
! ATACCTGGCTGGCTAACCAC+TGG - chr5_2:72305005-72305024 None:intergenic 55.0%
GTCAGCGCCCCTGTTTGTGT+CGG + chr5_2:72300009-72300028 Msa0786750:intron 60.0%
TTCCTATGCGCGGAGACTCC+TGG + chr5_2:72300727-72300746 Msa0786750:CDS 60.0%
TCCTGGTGCAGCTCGAGCAT+GGG + chr5_2:72300744-72300763 Msa0786750:CDS 60.0%
GCGTTCCGTAACAGTGAGCG+AGG - chr5_2:72301192-72301211 None:intergenic 60.0%
GGGCCGGCATATACAGTCTC+AGG + chr5_2:72302388-72302407 Msa0786750:intron 60.0%
AGCAGCAGATGCTGCTGCCT+CGG - chr5_2:72303360-72303379 None:intergenic 60.0%
CACCAGGAGTCTCCGCGCAT+AGG - chr5_2:72300732-72300751 None:intergenic 65.0%
CTCCTGGTGCAGCTCGAGCA+TGG + chr5_2:72300743-72300762 Msa0786750:CDS 65.0%
ACCCATGCTCGAGCTGCACC+AGG - chr5_2:72300748-72300767 None:intergenic 65.0%
AGCAGATGCTGCTGCCTCGG+CGG - chr5_2:72303357-72303376 None:intergenic 65.0%
TGAGACTGCCGAAGCCGCCG+AGG + chr5_2:72303340-72303359 Msa0786750:CDS 70.0%
TGCTGCTGCCTCGGCGGCTT+CGG - chr5_2:72303351-72303370 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 72298709 72305324 72298709 ID=Msa0786750;Name=Msa0786750
chr5_2 mRNA 72298709 72305324 72298709 ID=Msa0786750-mRNA-1;Parent=Msa0786750;Name=Msa0786750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.88|0.8|1|1|1|10|254|518
chr5_2 exon 72298709 72298861 72298709 ID=Msa0786750-mRNA-1:exon:21975;Parent=Msa0786750-mRNA-1
chr5_2 exon 72298958 72299065 72298958 ID=Msa0786750-mRNA-1:exon:21976;Parent=Msa0786750-mRNA-1
chr5_2 exon 72300165 72300226 72300165 ID=Msa0786750-mRNA-1:exon:21977;Parent=Msa0786750-mRNA-1
chr5_2 exon 72300334 72300417 72300334 ID=Msa0786750-mRNA-1:exon:21978;Parent=Msa0786750-mRNA-1
chr5_2 exon 72300551 72300582 72300551 ID=Msa0786750-mRNA-1:exon:21979;Parent=Msa0786750-mRNA-1
chr5_2 exon 72300698 72300779 72300698 ID=Msa0786750-mRNA-1:exon:21980;Parent=Msa0786750-mRNA-1
chr5_2 exon 72301696 72301924 72301696 ID=Msa0786750-mRNA-1:exon:21981;Parent=Msa0786750-mRNA-1
chr5_2 exon 72303245 72303472 72303245 ID=Msa0786750-mRNA-1:exon:21982;Parent=Msa0786750-mRNA-1
chr5_2 exon 72303864 72304093 72303864 ID=Msa0786750-mRNA-1:exon:21983;Parent=Msa0786750-mRNA-1
chr5_2 exon 72304722 72305324 72304722 ID=Msa0786750-mRNA-1:exon:21984;Parent=Msa0786750-mRNA-1
chr5_2 CDS 72298709 72298861 72298709 ID=Msa0786750-mRNA-1:cds;Parent=Msa0786750-mRNA-1
chr5_2 CDS 72298958 72299065 72298958 ID=Msa0786750-mRNA-1:cds;Parent=Msa0786750-mRNA-1
chr5_2 CDS 72300165 72300226 72300165 ID=Msa0786750-mRNA-1:cds;Parent=Msa0786750-mRNA-1
chr5_2 CDS 72300334 72300417 72300334 ID=Msa0786750-mRNA-1:cds;Parent=Msa0786750-mRNA-1
chr5_2 CDS 72300551 72300582 72300551 ID=Msa0786750-mRNA-1:cds;Parent=Msa0786750-mRNA-1
chr5_2 CDS 72300698 72300779 72300698 ID=Msa0786750-mRNA-1:cds;Parent=Msa0786750-mRNA-1
chr5_2 CDS 72301696 72301924 72301696 ID=Msa0786750-mRNA-1:cds;Parent=Msa0786750-mRNA-1
chr5_2 CDS 72303245 72303472 72303245 ID=Msa0786750-mRNA-1:cds;Parent=Msa0786750-mRNA-1
chr5_2 CDS 72303864 72304093 72303864 ID=Msa0786750-mRNA-1:cds;Parent=Msa0786750-mRNA-1
chr5_2 CDS 72304722 72305070 72304722 ID=Msa0786750-mRNA-1:cds;Parent=Msa0786750-mRNA-1
chr5_2 three_prime_UTR 72305071 72305324 72305071 ID=Msa0786750-mRNA-1:three_prime_utr;Parent=Msa0786750-mRNA-1
Gene Sequence

>Msa0786750

ATTTATATTCAACCATATAAAAAAAAAAAAAAACAAGAACAAGAAGCAAATCTGAAGAAACATAGTATCATCCATAAACAAAAACCTTTTGTTGGGTTTGAAACTTTGAAGCTTCCGACAAGAGTTGTTGATCTACGCCTTATGGCTTCTCCGCGAGCTGTTGAAAACACAGAGAATAGTTTGGAGAAGATCAAGCGTCAGCTAGCTTCTGCTTCTGGTAGAAATCTGTTGCAGGGTCCACTTCTTAAGAGATCCGAGACTCTGAGGAAATGGAACGAACGTTGGGTGATCTTGGACCCAACAACTGGGAAAATGGAATACAAGTTAAGAAGAAATGAGCCAACTGTCAAGGGAACAATTCTATTTGACGCAAATAGCACCATTACTGTATCTCCTGTGAATTTCAATGGGCTACCGAAGTATGATGGATGCTGCATTTATATCGGGACACCACAGAAGAAGGATTATTTCCTATGCGCGGAGACTCCTGGTGCAGCTCGAGCATGGGTGTCAACATTGCATGCCACTCAGTTGGTTCTAAAAGCTCATAAAGAAGCTGTGAATTCCTTAAGTGGGAATGGTTCTACAAAATTAGGAACTGTTGCAACTGTTGTTGCTGCAGCCAACTCAACAGCCTCGGAATGTTCTAAAGAAATTGAAGCGGCAATGCAGATTTCTTTGCGAAATGCTCTTGGAATGATGCCAAATAGGACTACTGATGGTCCTATGGATGATTTAACAATCATGAAGGAAACACTAAGAGTTAAGGATGAGGAGCTACAAAATTTGGCTCGAGACCTTCGGGCACGTGATTCAACTATAACAGAAATAGCGGATAAATTATCTGAGACTGCCGAAGCCGCCGAGGCAGCAGCATCTGCTGCTTATACTATGGATGAGCAACGGAGAATTGTTTGTGCAGAAATTGAGCGTTTGAGAAAAGATTCTGAGAAGCAGCAGGAGGTGTATGCACAGAAGAGAGATGCTGCTATTAAGGAGGCAAATATGTGGCGTACTGAACTGGGAAAAGCTAGAGAGCATGACGTGATCTTAGAAGCAACTGTAGTAAGAGCGGAAGAGAAGGTCAGGGTTGCTGAGGCCAATGCTGAAGCTAGGATAAAGGAAGCTGTACAGAGAGAATCAGTGGCAACAAAAGAGAAGCAGGAACTTCTTGCATATGTTAACATGCTAAAAGCACAACTTCAAAGGCAACACATTGATGCAACTCAAGTTGTTGAGAAGACAGAGTCATGCTCAGATACAAAGCATGTTGATCCCACTGAAGAAAATGTGGATAAAGCATGCCTAAGTGTTTCTAGAGCAAACCCTATCCCTGCAGAGAATGTAGTTCACATGGCAACAGACCAGGTAAACAACATTCAGCCAGTTGGTGACAACGAATGGAGCGATATTCAGGCTACAGAGGCAAGGATAGCCGATGTAAGGGAAGTCGCAGCACCAGAAACTGATGGAAGCAGCTTGGATATTCCAGTGGTTAGCCAGCCAGGTATCAATCATCACCACGAACAAGGATCAAACTCTTTCCATCAGCCCTGA

Protein sequence

>Msa0786750

IYIQPYKKKKKQEQEANLKKHSIIHKQKPFVGFETLKLPTRVVDLRLMASPRAVENTENSLEKIKRQLASASGRNLLQGPLLKRSETLRKWNERWVILDPTTGKMEYKLRRNEPTVKGTILFDANSTITVSPVNFNGLPKYDGCCIYIGTPQKKDYFLCAETPGAARAWVSTLHATQLVLKAHKEAVNSLSGNGSTKLGTVATVVAAANSTASECSKEIEAAMQISLRNALGMMPNRTTDGPMDDLTIMKETLRVKDEELQNLARDLRARDSTITEIADKLSETAEAAEAAASAAYTMDEQRRIVCAEIERLRKDSEKQQEVYAQKRDAAIKEANMWRTELGKAREHDVILEATVVRAEEKVRVAEANAEARIKEAVQRESVATKEKQELLAYVNMLKAQLQRQHIDATQVVEKTESCSDTKHVDPTEENVDKACLSVSRANPIPAENVVHMATDQVNNIQPVGDNEWSDIQATEARIADVREVAAPETDGSSLDIPVVSQPGINHHHEQGSNSFHQP*