Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866810 | AES92573.2 | 75.472 | 106 | 18 | 2 | 87 | 184 | 58 | 163 | 4.80e-45 | 156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866810 | sp|Q9FGT8|TIL_ARATH | 57.547 | 106 | 37 | 2 | 87 | 184 | 61 | 166 | 9.09e-34 | 121 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866810 | G7JHY6 | 75.472 | 106 | 18 | 2 | 87 | 184 | 58 | 163 | 2.29e-45 | 156 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102070 | Msa0866810 | 0.810752 | 9.857484e-51 | -8.615850e-47 |
| Msa0743810 | Msa0866810 | 0.806735 | 7.121640e-50 | -8.615850e-47 |
| Msa0825860 | Msa0866810 | 0.801057 | 1.077457e-48 | -8.615850e-47 |
| Msa0414420 | Msa0866810 | 0.831366 | 1.739016e-55 | -8.615850e-47 |
| Msa0452900 | Msa0866810 | 0.821530 | 3.845356e-53 | -8.615850e-47 |
| Msa0267010 | Msa0866810 | 0.806639 | 7.460535e-50 | -8.615850e-47 |
| Msa0342240 | Msa0866810 | 0.819407 | 1.180673e-52 | -8.615850e-47 |
| Msa0564890 | Msa0866810 | 0.800530 | 1.380487e-48 | -8.615850e-47 |
| Msa0866810 | Msa1025360 | 0.817163 | 3.802413e-52 | -8.615850e-47 |
| Msa0866810 | Msa1025370 | 0.807128 | 5.879847e-50 | -8.615850e-47 |
| Msa0866810 | Msa1044830 | 0.803133 | 4.031417e-49 | -8.615850e-47 |
| Msa0866810 | Msa1044840 | 0.819243 | 1.286324e-52 | -8.615850e-47 |
| Msa0866810 | Msa1192640 | 0.810290 | 1.240495e-50 | -8.615850e-47 |
| Msa0866810 | Msa1285930 | 0.817174 | 3.781616e-52 | -8.615850e-47 |
| Msa0866810 | Msa1287800 | 0.806734 | 7.125135e-50 | -8.615850e-47 |
| Msa0866810 | Msa1287810 | 0.824913 | 6.237037e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866810 | MtrunA17_Chr4g0074361 | 75.472 | 106 | 18 | 2 | 87 | 184 | 85 | 190 | 2.50e-48 | 155 |
| Msa0866810 | MtrunA17_Chr5g0437381 | 89.333 | 75 | 8 | 0 | 1 | 75 | 1 | 75 | 3.85e-42 | 136 |
| Msa0866810 | MtrunA17_Chr4g0074351 | 64.151 | 106 | 30 | 1 | 87 | 184 | 63 | 168 | 2.23e-41 | 137 |
| Msa0866810 | MtrunA17_Chr4g0074341 | 62.264 | 106 | 32 | 2 | 87 | 184 | 161 | 266 | 2.68e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0866810 | AT5G58070.1 | 57.547 | 106 | 37 | 2 | 87 | 184 | 61 | 166 | 9.24e-35 | 121 |
Find 48 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTGTTCTTGGGGATTAC+TGG | 0.154395 | 5_4:+68859980 | Msa0866810:CDS |
| TTGCCATTTATTCCTGTTCT+TGG | 0.226657 | 5_4:+68859970 | Msa0866810:CDS |
| TATAAACGAAATTGCTTATA+AGG | 0.230129 | 5_4:+68859891 | Msa0866810:CDS |
| TGCCATTTATTCCTGTTCTT+GGG | 0.244983 | 5_4:+68859971 | Msa0866810:CDS |
| GAGTTTGGCTTCATCACTAC+TGG | 0.279086 | 5_4:-68859920 | None:intergenic |
| AAGAAATCTGACCTTGAGTT+TGG | 0.303721 | 5_4:-68859935 | None:intergenic |
| TCCCCAAGAACAGGAATAAA+TGG | 0.312921 | 5_4:-68859973 | None:intergenic |
| CTGTGGAGTCTTGTGCAATT+TGG | 0.337791 | 5_4:-68860673 | None:intergenic |
| TTTCTGAACAACCATGTTGT+AGG | 0.346241 | 5_4:-68860625 | None:intergenic |
| ATTATCCAGGCAAACCCATT+TGG | 0.396622 | 5_4:+68860593 | Msa0866810:CDS |
| TGTAGGATTCATCATCCAAA+TGG | 0.418310 | 5_4:-68860608 | None:intergenic |
| ATGAAGTCCTTTATCCTCTT+CGG | 0.426108 | 5_4:-68859647 | None:intergenic |
| ATCATCCAAATGGGTTTGCC+TGG | 0.430449 | 5_4:-68860598 | None:intergenic |
| TGCTATATGGTTGGAGGTGG+TGG | 0.434136 | 5_4:+68859695 | Msa0866810:CDS |
| ATCCAGTAATCCCCAAGAAC+AGG | 0.445665 | 5_4:-68859982 | None:intergenic |
| AGGTTATCCGAAGAGGATAA+AGG | 0.450914 | 5_4:+68859640 | Msa0866810:CDS |
| GCCATTTATTCCTGTTCTTG+GGG | 0.456196 | 5_4:+68859972 | Msa0866810:CDS |
| ACAGGAATAAATGGCAAGAA+TGG | 0.469003 | 5_4:-68859964 | None:intergenic |
| AGTTTGGCTTCATCACTACT+GGG | 0.470668 | 5_4:-68859919 | None:intergenic |
| TCGTTGGAGAAAATGCTATA+TGG | 0.478687 | 5_4:+68859682 | Msa0866810:CDS |
| GTCGGAATCCGAGGTGGAGA+TGG | 0.486558 | 5_4:+68859717 | Msa0866810:CDS |
| AATATAACATGAAAAGTTGA+AGG | 0.491900 | 5_4:-68860030 | None:intergenic |
| GTTCAGAAAGCTAAGGATGA+AGG | 0.497782 | 5_4:+68860639 | Msa0866810:CDS |
| GGTGGAGATGGTGGCAAAAG+AGG | 0.505627 | 5_4:+68859729 | Msa0866810:CDS |
| GTAGGATTCATCATCCAAAT+GGG | 0.514808 | 5_4:-68860607 | None:intergenic |
| AAAGGACTTCATAGTGGTGA+TGG | 0.519261 | 5_4:+68859658 | Msa0866810:CDS |
| TTGGTCCCTAGATATTATCC+AGG | 0.522000 | 5_4:+68860580 | Msa0866810:intron |
| TTATTATCTTACTGAGGTGG+AGG | 0.533939 | 5_4:-68860702 | None:intergenic |
| AAGGTAGATAATCTTGATCA+AGG | 0.537738 | 5_4:-68860011 | None:intergenic |
| TGGAGAAAATGCTATATGGT+TGG | 0.545338 | 5_4:+68859686 | Msa0866810:CDS |
| ATTGTTCTCAACAAACTCAA+AGG | 0.558799 | 5_4:+68859620 | Msa0866810:CDS |
| ACCTTATTATCTTACTGAGG+TGG | 0.568195 | 5_4:-68860705 | None:intergenic |
| TCATAGTGGTGATGGATCGT+TGG | 0.578590 | 5_4:+68859666 | Msa0866810:CDS |
| GAGGTGGTGGTCGGAATCCG+AGG | 0.579901 | 5_4:+68859708 | Msa0866810:CDS |
| AACTCAAAGGTTATCCGAAG+AGG | 0.601458 | 5_4:+68859633 | Msa0866810:CDS |
| ATATGGTTGGAGGTGGTGGT+CGG | 0.609174 | 5_4:+68859699 | Msa0866810:CDS |
| GGAATCCGAGGTGGAGATGG+TGG | 0.609431 | 5_4:+68859720 | Msa0866810:CDS |
| CATGGTTGTTCAGAAAGCTA+AGG | 0.611490 | 5_4:+68860632 | Msa0866810:CDS |
| AGAACCTTATTATCTTACTG+AGG | 0.615499 | 5_4:-68860708 | None:intergenic |
| GTGGTGGTCGGAATCCGAGG+TGG | 0.619458 | 5_4:+68859711 | Msa0866810:CDS |
| GGAATAAATGGCAAGAATGG+AGG | 0.625205 | 5_4:-68859961 | None:intergenic |
| TAGTGATGAAGCCAAACTCA+AGG | 0.626688 | 5_4:+68859924 | Msa0866810:CDS |
| AAATGCTATATGGTTGGAGG+TGG | 0.628307 | 5_4:+68859692 | Msa0866810:CDS |
| AGAAAATGCTATATGGTTGG+AGG | 0.631496 | 5_4:+68859689 | Msa0866810:CDS |
| GAGGATAAAGGACTTCATAG+TGG | 0.636133 | 5_4:+68859652 | Msa0866810:CDS |
| TGAGGTGGAGGTCTACTCTG+TGG | 0.637085 | 5_4:-68860690 | None:intergenic |
| GTTTGGCTTCATCACTACTG+GGG | 0.642301 | 5_4:-68859918 | None:intergenic |
| GGATGATGAATCCTACAACA+TGG | 0.753248 | 5_4:+68860614 | Msa0866810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTGTTCAATGTTTTAT+AGG | + | chr5_4:68860187-68860206 | Msa0866810:intron | 15.0% |
| !!! | TATTTGTTCAATGTTTTATA+GGG | + | chr5_4:68860188-68860207 | Msa0866810:intron | 15.0% |
| !!! | ATATTTGTTCAATGTTTTAT+AGG | + | chr5_4:68860187-68860206 | Msa0866810:intron | 15.0% |
| !!! | TATTTGTTCAATGTTTTATA+GGG | + | chr5_4:68860188-68860207 | Msa0866810:intron | 15.0% |
| !! | TATAAACGAAATTGCTTATA+AGG | + | chr5_4:68859891-68859910 | Msa0866810:CDS | 20.0% |
| !! | AATATAACATGAAAAGTTGA+AGG | - | chr5_4:68860033-68860052 | None:intergenic | 20.0% |
| !! | TTTCATGTTATATTGTATTG+TGG | + | chr5_4:68860039-68860058 | Msa0866810:intron | 20.0% |
| !!! | ATTTGTTCAATGTTTTATAG+GGG | + | chr5_4:68860189-68860208 | Msa0866810:intron | 20.0% |
| !!! | TTTTTTGGAAACACTAAATT+GGG | - | chr5_4:68860250-68860269 | None:intergenic | 20.0% |
| !!! | TTTTTTTGGAAACACTAAAT+TGG | - | chr5_4:68860251-68860270 | None:intergenic | 20.0% |
| !! | AAAAACTCAATTTAAATCCT+TGG | - | chr5_4:68860435-68860454 | None:intergenic | 20.0% |
| !!! | TCTTCACTCTATTTTATATA+TGG | + | chr5_4:68860482-68860501 | Msa0866810:intron | 20.0% |
| !!! | CTTCACTCTATTTTATATAT+GGG | + | chr5_4:68860483-68860502 | Msa0866810:intron | 20.0% |
| !! | TATAAACGAAATTGCTTATA+AGG | + | chr5_4:68859891-68859910 | Msa0866810:CDS | 20.0% |
| !! | AATATAACATGAAAAGTTGA+AGG | - | chr5_4:68860033-68860052 | None:intergenic | 20.0% |
| !! | TTTCATGTTATATTGTATTG+TGG | + | chr5_4:68860039-68860058 | Msa0866810:intron | 20.0% |
| !!! | ATTTGTTCAATGTTTTATAG+GGG | + | chr5_4:68860189-68860208 | Msa0866810:intron | 20.0% |
| !!! | TTTTTTGGAAACACTAAATT+GGG | - | chr5_4:68860250-68860269 | None:intergenic | 20.0% |
| !!! | TTTTTTTGGAAACACTAAAT+TGG | - | chr5_4:68860251-68860270 | None:intergenic | 20.0% |
| !! | AAAAACTCAATTTAAATCCT+TGG | - | chr5_4:68860435-68860454 | None:intergenic | 20.0% |
| !!! | TCTTCACTCTATTTTATATA+TGG | + | chr5_4:68860482-68860501 | Msa0866810:intron | 20.0% |
| !!! | CTTCACTCTATTTTATATAT+GGG | + | chr5_4:68860483-68860502 | Msa0866810:intron | 20.0% |
| !!! | CATTAAACTTTTATCGACTT+GGG | - | chr5_4:68859777-68859796 | None:intergenic | 25.0% |
| !!! | ACATTAAACTTTTATCGACT+TGG | - | chr5_4:68859778-68859797 | None:intergenic | 25.0% |
| ! | ATAAAAGTTTAATGTGAGTG+TGG | + | chr5_4:68859783-68859802 | Msa0866810:intron | 25.0% |
| ! | GATAATTTATATAAGCTCAG+TGG | + | chr5_4:68859842-68859861 | Msa0866810:intron | 25.0% |
| ! | GGGGTTTCATAATTTATAAA+AGG | - | chr5_4:68860230-68860249 | None:intergenic | 25.0% |
| !!! | TTTTTGGAAACACTAAATTG+GGG | - | chr5_4:68860249-68860268 | None:intergenic | 25.0% |
| !!! | TAGTTGAATCAATTTTGAGA+TGG | + | chr5_4:68860346-68860365 | Msa0866810:intron | 25.0% |
| !!! | AGTTGAATCAATTTTGAGAT+GGG | + | chr5_4:68860347-68860366 | Msa0866810:intron | 25.0% |
| !!! | GTTACGATGTATTTTTAACA+TGG | + | chr5_4:68860395-68860414 | Msa0866810:intron | 25.0% |
| ! | AAAATAATCCAAGTTATGGT+AGG | - | chr5_4:68860562-68860581 | None:intergenic | 25.0% |
| !! | TACCATAACTTGGATTATTT+TGG | + | chr5_4:68860561-68860580 | Msa0866810:intron | 25.0% |
| !!! | CATTAAACTTTTATCGACTT+GGG | - | chr5_4:68859777-68859796 | None:intergenic | 25.0% |
| !!! | ACATTAAACTTTTATCGACT+TGG | - | chr5_4:68859778-68859797 | None:intergenic | 25.0% |
| ! | ATAAAAGTTTAATGTGAGTG+TGG | + | chr5_4:68859783-68859802 | Msa0866810:intron | 25.0% |
| ! | GATAATTTATATAAGCTCAG+TGG | + | chr5_4:68859842-68859861 | Msa0866810:intron | 25.0% |
| ! | GGGGTTTCATAATTTATAAA+AGG | - | chr5_4:68860230-68860249 | None:intergenic | 25.0% |
| !!! | TTTTTGGAAACACTAAATTG+GGG | - | chr5_4:68860249-68860268 | None:intergenic | 25.0% |
| !!! | TAGTTGAATCAATTTTGAGA+TGG | + | chr5_4:68860346-68860365 | Msa0866810:intron | 25.0% |
| !!! | AGTTGAATCAATTTTGAGAT+GGG | + | chr5_4:68860347-68860366 | Msa0866810:intron | 25.0% |
| !!! | GTTACGATGTATTTTTAACA+TGG | + | chr5_4:68860395-68860414 | Msa0866810:intron | 25.0% |
| ! | AAAATAATCCAAGTTATGGT+AGG | - | chr5_4:68860562-68860581 | None:intergenic | 25.0% |
| !! | TACCATAACTTGGATTATTT+TGG | + | chr5_4:68860561-68860580 | Msa0866810:intron | 25.0% |
| ATTGTTCTCAACAAACTCAA+AGG | + | chr5_4:68859620-68859639 | Msa0866810:CDS | 30.0% | |
| AAGGTAGATAATCTTGATCA+AGG | - | chr5_4:68860014-68860033 | None:intergenic | 30.0% | |
| !! | CGATGTATTTTTAACATGGA+TGG | + | chr5_4:68860399-68860418 | Msa0866810:intron | 30.0% |
| !!! | TGGATGGATTTTTTTTTCCA+AGG | + | chr5_4:68860415-68860434 | Msa0866810:intron | 30.0% |
| !! | AGTGAAGATCAATTGATTTG+TGG | - | chr5_4:68860470-68860489 | None:intergenic | 30.0% |
| GACCAAAATAATCCAAGTTA+TGG | - | chr5_4:68860566-68860585 | None:intergenic | 30.0% | |
| ATTGTTCTCAACAAACTCAA+AGG | + | chr5_4:68859620-68859639 | Msa0866810:CDS | 30.0% | |
| AAGGTAGATAATCTTGATCA+AGG | - | chr5_4:68860014-68860033 | None:intergenic | 30.0% | |
| !! | CGATGTATTTTTAACATGGA+TGG | + | chr5_4:68860399-68860418 | Msa0866810:intron | 30.0% |
| !!! | TGGATGGATTTTTTTTTCCA+AGG | + | chr5_4:68860415-68860434 | Msa0866810:intron | 30.0% |
| !! | AGTGAAGATCAATTGATTTG+TGG | - | chr5_4:68860470-68860489 | None:intergenic | 30.0% |
| GACCAAAATAATCCAAGTTA+TGG | - | chr5_4:68860566-68860585 | None:intergenic | 30.0% | |
| ATGAAGTCCTTTATCCTCTT+CGG | - | chr5_4:68859650-68859669 | None:intergenic | 35.0% | |
| TCGTTGGAGAAAATGCTATA+TGG | + | chr5_4:68859682-68859701 | Msa0866810:CDS | 35.0% | |
| TGGAGAAAATGCTATATGGT+TGG | + | chr5_4:68859686-68859705 | Msa0866810:CDS | 35.0% | |
| AGAAAATGCTATATGGTTGG+AGG | + | chr5_4:68859689-68859708 | Msa0866810:CDS | 35.0% | |
| AAGAAATCTGACCTTGAGTT+TGG | - | chr5_4:68859938-68859957 | None:intergenic | 35.0% | |
| ACAGGAATAAATGGCAAGAA+TGG | - | chr5_4:68859967-68859986 | None:intergenic | 35.0% | |
| ! | TTGCCATTTATTCCTGTTCT+TGG | + | chr5_4:68859970-68859989 | Msa0866810:CDS | 35.0% |
| ! | TGCCATTTATTCCTGTTCTT+GGG | + | chr5_4:68859971-68859990 | Msa0866810:CDS | 35.0% |
| TTATAGGGGAAGATCTATTG+TGG | + | chr5_4:68860203-68860222 | Msa0866810:intron | 35.0% | |
| !!! | TTTTGAGATGGGAGAACATT+TGG | + | chr5_4:68860358-68860377 | Msa0866810:intron | 35.0% |
| !! | AATTGATTTGTGGTGCATGA+GGG | - | chr5_4:68860460-68860479 | None:intergenic | 35.0% |
| TATTCCTTCCTACCATAACT+TGG | + | chr5_4:68860551-68860570 | Msa0866810:intron | 35.0% | |
| TAATCCAAGTTATGGTAGGA+AGG | - | chr5_4:68860558-68860577 | None:intergenic | 35.0% | |
| GTTTGCCTGGATAATATCTA+GGG | - | chr5_4:68860588-68860607 | None:intergenic | 35.0% | |
| GTAGGATTCATCATCCAAAT+GGG | - | chr5_4:68860610-68860629 | None:intergenic | 35.0% | |
| TGTAGGATTCATCATCCAAA+TGG | - | chr5_4:68860611-68860630 | None:intergenic | 35.0% | |
| TTTCTGAACAACCATGTTGT+AGG | - | chr5_4:68860628-68860647 | None:intergenic | 35.0% | |
| ATGAAGTCCTTTATCCTCTT+CGG | - | chr5_4:68859650-68859669 | None:intergenic | 35.0% | |
| TCGTTGGAGAAAATGCTATA+TGG | + | chr5_4:68859682-68859701 | Msa0866810:CDS | 35.0% | |
| TGGAGAAAATGCTATATGGT+TGG | + | chr5_4:68859686-68859705 | Msa0866810:CDS | 35.0% | |
| AGAAAATGCTATATGGTTGG+AGG | + | chr5_4:68859689-68859708 | Msa0866810:CDS | 35.0% | |
| AAGAAATCTGACCTTGAGTT+TGG | - | chr5_4:68859938-68859957 | None:intergenic | 35.0% | |
| ACAGGAATAAATGGCAAGAA+TGG | - | chr5_4:68859967-68859986 | None:intergenic | 35.0% | |
| ! | TTGCCATTTATTCCTGTTCT+TGG | + | chr5_4:68859970-68859989 | Msa0866810:CDS | 35.0% |
| ! | TGCCATTTATTCCTGTTCTT+GGG | + | chr5_4:68859971-68859990 | Msa0866810:CDS | 35.0% |
| TTATAGGGGAAGATCTATTG+TGG | + | chr5_4:68860203-68860222 | Msa0866810:intron | 35.0% | |
| !!! | TTTTGAGATGGGAGAACATT+TGG | + | chr5_4:68860358-68860377 | Msa0866810:intron | 35.0% |
| !! | AATTGATTTGTGGTGCATGA+GGG | - | chr5_4:68860460-68860479 | None:intergenic | 35.0% |
| TATTCCTTCCTACCATAACT+TGG | + | chr5_4:68860551-68860570 | Msa0866810:intron | 35.0% | |
| TAATCCAAGTTATGGTAGGA+AGG | - | chr5_4:68860558-68860577 | None:intergenic | 35.0% | |
| GTTTGCCTGGATAATATCTA+GGG | - | chr5_4:68860588-68860607 | None:intergenic | 35.0% | |
| GTAGGATTCATCATCCAAAT+GGG | - | chr5_4:68860610-68860629 | None:intergenic | 35.0% | |
| TGTAGGATTCATCATCCAAA+TGG | - | chr5_4:68860611-68860630 | None:intergenic | 35.0% | |
| TTTCTGAACAACCATGTTGT+AGG | - | chr5_4:68860628-68860647 | None:intergenic | 35.0% | |
| AACTCAAAGGTTATCCGAAG+AGG | + | chr5_4:68859633-68859652 | Msa0866810:CDS | 40.0% | |
| AGGTTATCCGAAGAGGATAA+AGG | + | chr5_4:68859640-68859659 | Msa0866810:CDS | 40.0% | |
| GAGGATAAAGGACTTCATAG+TGG | + | chr5_4:68859652-68859671 | Msa0866810:CDS | 40.0% | |
| AAAGGACTTCATAGTGGTGA+TGG | + | chr5_4:68859658-68859677 | Msa0866810:CDS | 40.0% | |
| AAATGCTATATGGTTGGAGG+TGG | + | chr5_4:68859692-68859711 | Msa0866810:CDS | 40.0% | |
| !!! | TTTTATCGACTTGGGTGTCA+GGG | - | chr5_4:68859769-68859788 | None:intergenic | 40.0% |
| AGTTTAATGTGAGTGTGGAG+AGG | + | chr5_4:68859788-68859807 | Msa0866810:intron | 40.0% | |
| ! | AGTTTGGCTTCATCACTACT+GGG | - | chr5_4:68859922-68859941 | None:intergenic | 40.0% |
| TAGTGATGAAGCCAAACTCA+AGG | + | chr5_4:68859924-68859943 | Msa0866810:CDS | 40.0% | |
| GGAATAAATGGCAAGAATGG+AGG | - | chr5_4:68859964-68859983 | None:intergenic | 40.0% | |
| GCCATTTATTCCTGTTCTTG+GGG | + | chr5_4:68859972-68859991 | Msa0866810:CDS | 40.0% | |
| TCCCCAAGAACAGGAATAAA+TGG | - | chr5_4:68859976-68859995 | None:intergenic | 40.0% | |
| TGTGGTGCAAAGATCTATGT+AGG | + | chr5_4:68860057-68860076 | Msa0866810:intron | 40.0% | |
| !! | CAATTGATTTGTGGTGCATG+AGG | - | chr5_4:68860461-68860480 | None:intergenic | 40.0% |
| TTGGTCCCTAGATATTATCC+AGG | + | chr5_4:68860580-68860599 | Msa0866810:intron | 40.0% | |
| GGTTTGCCTGGATAATATCT+AGG | - | chr5_4:68860589-68860608 | None:intergenic | 40.0% | |
| ATTATCCAGGCAAACCCATT+TGG | + | chr5_4:68860593-68860612 | Msa0866810:CDS | 40.0% | |
| GGATGATGAATCCTACAACA+TGG | + | chr5_4:68860614-68860633 | Msa0866810:CDS | 40.0% | |
| CATGGTTGTTCAGAAAGCTA+AGG | + | chr5_4:68860632-68860651 | Msa0866810:CDS | 40.0% | |
| GTTCAGAAAGCTAAGGATGA+AGG | + | chr5_4:68860639-68860658 | Msa0866810:CDS | 40.0% | |
| AACTCAAAGGTTATCCGAAG+AGG | + | chr5_4:68859633-68859652 | Msa0866810:CDS | 40.0% | |
| AGGTTATCCGAAGAGGATAA+AGG | + | chr5_4:68859640-68859659 | Msa0866810:CDS | 40.0% | |
| GAGGATAAAGGACTTCATAG+TGG | + | chr5_4:68859652-68859671 | Msa0866810:CDS | 40.0% | |
| AAAGGACTTCATAGTGGTGA+TGG | + | chr5_4:68859658-68859677 | Msa0866810:CDS | 40.0% | |
| AAATGCTATATGGTTGGAGG+TGG | + | chr5_4:68859692-68859711 | Msa0866810:CDS | 40.0% | |
| !!! | TTTTATCGACTTGGGTGTCA+GGG | - | chr5_4:68859769-68859788 | None:intergenic | 40.0% |
| AGTTTAATGTGAGTGTGGAG+AGG | + | chr5_4:68859788-68859807 | Msa0866810:intron | 40.0% | |
| ! | AGTTTGGCTTCATCACTACT+GGG | - | chr5_4:68859922-68859941 | None:intergenic | 40.0% |
| TAGTGATGAAGCCAAACTCA+AGG | + | chr5_4:68859924-68859943 | Msa0866810:CDS | 40.0% | |
| GGAATAAATGGCAAGAATGG+AGG | - | chr5_4:68859964-68859983 | None:intergenic | 40.0% | |
| GCCATTTATTCCTGTTCTTG+GGG | + | chr5_4:68859972-68859991 | Msa0866810:CDS | 40.0% | |
| TCCCCAAGAACAGGAATAAA+TGG | - | chr5_4:68859976-68859995 | None:intergenic | 40.0% | |
| TGTGGTGCAAAGATCTATGT+AGG | + | chr5_4:68860057-68860076 | Msa0866810:intron | 40.0% | |
| !! | CAATTGATTTGTGGTGCATG+AGG | - | chr5_4:68860461-68860480 | None:intergenic | 40.0% |
| TTGGTCCCTAGATATTATCC+AGG | + | chr5_4:68860580-68860599 | Msa0866810:intron | 40.0% | |
| GGTTTGCCTGGATAATATCT+AGG | - | chr5_4:68860589-68860608 | None:intergenic | 40.0% | |
| ATTATCCAGGCAAACCCATT+TGG | + | chr5_4:68860593-68860612 | Msa0866810:CDS | 40.0% | |
| GGATGATGAATCCTACAACA+TGG | + | chr5_4:68860614-68860633 | Msa0866810:CDS | 40.0% | |
| CATGGTTGTTCAGAAAGCTA+AGG | + | chr5_4:68860632-68860651 | Msa0866810:CDS | 40.0% | |
| GTTCAGAAAGCTAAGGATGA+AGG | + | chr5_4:68860639-68860658 | Msa0866810:CDS | 40.0% | |
| !! | TCATAGTGGTGATGGATCGT+TGG | + | chr5_4:68859666-68859685 | Msa0866810:CDS | 45.0% |
| !!! | CTTTTATCGACTTGGGTGTC+AGG | - | chr5_4:68859770-68859789 | None:intergenic | 45.0% |
| ! | GTTTGGCTTCATCACTACTG+GGG | - | chr5_4:68859921-68859940 | None:intergenic | 45.0% |
| ! | GAGTTTGGCTTCATCACTAC+TGG | - | chr5_4:68859923-68859942 | None:intergenic | 45.0% |
| TTCCTGTTCTTGGGGATTAC+TGG | + | chr5_4:68859980-68859999 | Msa0866810:CDS | 45.0% | |
| ATCCAGTAATCCCCAAGAAC+AGG | - | chr5_4:68859985-68860004 | None:intergenic | 45.0% | |
| ! | ATCATCCAAATGGGTTTGCC+TGG | - | chr5_4:68860601-68860620 | None:intergenic | 45.0% |
| ! | CTGTGGAGTCTTGTGCAATT+TGG | - | chr5_4:68860676-68860695 | None:intergenic | 45.0% |
| !! | TCATAGTGGTGATGGATCGT+TGG | + | chr5_4:68859666-68859685 | Msa0866810:CDS | 45.0% |
| !!! | CTTTTATCGACTTGGGTGTC+AGG | - | chr5_4:68859770-68859789 | None:intergenic | 45.0% |
| ! | GTTTGGCTTCATCACTACTG+GGG | - | chr5_4:68859921-68859940 | None:intergenic | 45.0% |
| ! | GAGTTTGGCTTCATCACTAC+TGG | - | chr5_4:68859923-68859942 | None:intergenic | 45.0% |
| TTCCTGTTCTTGGGGATTAC+TGG | + | chr5_4:68859980-68859999 | Msa0866810:CDS | 45.0% | |
| ATCCAGTAATCCCCAAGAAC+AGG | - | chr5_4:68859985-68860004 | None:intergenic | 45.0% | |
| ! | ATCATCCAAATGGGTTTGCC+TGG | - | chr5_4:68860601-68860620 | None:intergenic | 45.0% |
| ! | CTGTGGAGTCTTGTGCAATT+TGG | - | chr5_4:68860676-68860695 | None:intergenic | 45.0% |
| !!! | TGATTTTTTAAAATTATTAT+CGG | + | chr5_4:68860139-68860158 | Msa0866810:intron | 5.0% |
| !!! | AAATGTTAATTTTTTTTTTT+TGG | - | chr5_4:68860265-68860284 | None:intergenic | 5.0% |
| !!! | AAAAAAAAAAATTAACATTT+TGG | + | chr5_4:68860265-68860284 | Msa0866810:intron | 5.0% |
| !!! | TGATTTTTTAAAATTATTAT+CGG | + | chr5_4:68860139-68860158 | Msa0866810:intron | 5.0% |
| !!! | AAATGTTAATTTTTTTTTTT+TGG | - | chr5_4:68860265-68860284 | None:intergenic | 5.0% |
| !!! | AAAAAAAAAAATTAACATTT+TGG | + | chr5_4:68860265-68860284 | Msa0866810:intron | 5.0% |
| TGCTATATGGTTGGAGGTGG+TGG | + | chr5_4:68859695-68859714 | Msa0866810:CDS | 50.0% | |
| ! | ATATGGTTGGAGGTGGTGGT+CGG | + | chr5_4:68859699-68859718 | Msa0866810:CDS | 50.0% |
| ! | TTTTGCCACCATCTCCACCT+CGG | - | chr5_4:68859728-68859747 | None:intergenic | 50.0% |
| TGCTATATGGTTGGAGGTGG+TGG | + | chr5_4:68859695-68859714 | Msa0866810:CDS | 50.0% | |
| ! | ATATGGTTGGAGGTGGTGGT+CGG | + | chr5_4:68859699-68859718 | Msa0866810:CDS | 50.0% |
| ! | TTTTGCCACCATCTCCACCT+CGG | - | chr5_4:68859728-68859747 | None:intergenic | 50.0% |
| ! | GGTGGAGATGGTGGCAAAAG+AGG | + | chr5_4:68859729-68859748 | Msa0866810:CDS | 55.0% |
| TGAGGTGGAGGTCTACTCTG+TGG | - | chr5_4:68860693-68860712 | None:intergenic | 55.0% | |
| ! | GGTGGAGATGGTGGCAAAAG+AGG | + | chr5_4:68859729-68859748 | Msa0866810:CDS | 55.0% |
| TGAGGTGGAGGTCTACTCTG+TGG | - | chr5_4:68860693-68860712 | None:intergenic | 55.0% | |
| GTCGGAATCCGAGGTGGAGA+TGG | + | chr5_4:68859717-68859736 | Msa0866810:CDS | 60.0% | |
| GGAATCCGAGGTGGAGATGG+TGG | + | chr5_4:68859720-68859739 | Msa0866810:CDS | 60.0% | |
| GTCGGAATCCGAGGTGGAGA+TGG | + | chr5_4:68859717-68859736 | Msa0866810:CDS | 60.0% | |
| GGAATCCGAGGTGGAGATGG+TGG | + | chr5_4:68859720-68859739 | Msa0866810:CDS | 60.0% | |
| ! | GAGGTGGTGGTCGGAATCCG+AGG | + | chr5_4:68859708-68859727 | Msa0866810:CDS | 65.0% |
| GTGGTGGTCGGAATCCGAGG+TGG | + | chr5_4:68859711-68859730 | Msa0866810:CDS | 65.0% | |
| ! | GAGGTGGTGGTCGGAATCCG+AGG | + | chr5_4:68859708-68859727 | Msa0866810:CDS | 65.0% |
| GTGGTGGTCGGAATCCGAGG+TGG | + | chr5_4:68859711-68859730 | Msa0866810:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 68859545 | 68860716 | 68859545 | ID=Msa0866810;Name=Msa0866810 |
| chr5_4 | mRNA | 68859545 | 68860716 | 68859545 | ID=Msa0866810-mRNA-1;Parent=Msa0866810;Name=Msa0866810-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0.5|0.66|3|0|184 |
| chr5_4 | exon | 68859545 | 68859795 | 68859545 | ID=Msa0866810-mRNA-1:exon:21755;Parent=Msa0866810-mRNA-1 |
| chr5_4 | exon | 68859867 | 68860044 | 68859867 | ID=Msa0866810-mRNA-1:exon:21756;Parent=Msa0866810-mRNA-1 |
| chr5_4 | exon | 68860591 | 68860716 | 68860591 | ID=Msa0866810-mRNA-1:exon:21757;Parent=Msa0866810-mRNA-1 |
| chr5_4 | CDS | 68859545 | 68859795 | 68859545 | ID=Msa0866810-mRNA-1:cds;Parent=Msa0866810-mRNA-1 |
| chr5_4 | CDS | 68859867 | 68860044 | 68859867 | ID=Msa0866810-mRNA-1:cds;Parent=Msa0866810-mRNA-1 |
| chr5_4 | CDS | 68860591 | 68860716 | 68860591 | ID=Msa0866810-mRNA-1:cds;Parent=Msa0866810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
