Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868200 | XP_003598365.1 | 97.846 | 325 | 5 | 1 | 1 | 323 | 1 | 325 | 0.0 | 661 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868200 | G7IVH8 | 97.846 | 325 | 5 | 1 | 1 | 323 | 1 | 325 | 0.0 | 661 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0378720 | Msa0868200 | 0.800389 | 1.474677e-48 | -8.615850e-47 |
| Msa0300270 | Msa0868200 | 0.805120 | 1.555842e-49 | -8.615850e-47 |
| Msa0300320 | Msa0868200 | 0.813972 | 1.952442e-51 | -8.615850e-47 |
| Msa0339500 | Msa0868200 | 0.816731 | 4.755329e-52 | -8.615850e-47 |
| Msa0341690 | Msa0868200 | 0.804896 | 1.733208e-49 | -8.615850e-47 |
| Msa0360210 | Msa0868200 | 0.800638 | 1.312155e-48 | -8.615850e-47 |
| Msa0868200 | Msa0972100 | 0.800483 | 1.410897e-48 | -8.615850e-47 |
| Msa0868200 | Msa1123380 | 0.819228 | 1.296981e-52 | -8.615850e-47 |
| Msa0868200 | Msa1205280 | 0.800427 | 1.448739e-48 | -8.615850e-47 |
| Msa0868200 | Msa1423350 | 0.806487 | 8.033828e-50 | -8.615850e-47 |
| Msa0868200 | Msa1446810 | 0.802122 | 6.515986e-49 | -8.615850e-47 |
| Msa0868200 | Msa1451160 | 0.806171 | 9.364980e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868200 | MtrunA17_Chr3g0080411 | 97.846 | 325 | 5 | 1 | 1 | 323 | 1 | 325 | 0.0 | 661 |
| Msa0868200 | MtrunA17_Chr3g0108541 | 35.185 | 324 | 177 | 14 | 7 | 318 | 8 | 310 | 3.10e-39 | 140 |
| Msa0868200 | MtrunA17_Chr5g0432911 | 33.750 | 320 | 188 | 12 | 1 | 318 | 4 | 301 | 6.49e-39 | 139 |
| Msa0868200 | MtrunA17_Chr8g0358861 | 29.560 | 318 | 193 | 10 | 8 | 318 | 1 | 294 | 1.17e-29 | 114 |
| Msa0868200 | MtrunA17_Chr7g0245311 | 29.283 | 321 | 197 | 10 | 7 | 317 | 13 | 313 | 1.16e-27 | 109 |
| Msa0868200 | MtrunA17_Chr8g0347761 | 27.817 | 284 | 176 | 10 | 37 | 314 | 34 | 294 | 4.76e-22 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0868200 | AT4G22900.1 | 46.471 | 340 | 151 | 9 | 1 | 317 | 1 | 332 | 1.31e-96 | 290 |
| Msa0868200 | AT4G11950.1 | 44.172 | 326 | 151 | 10 | 14 | 317 | 10 | 326 | 1.81e-82 | 253 |
| Msa0868200 | AT1G62981.2 | 42.071 | 309 | 153 | 12 | 28 | 318 | 41 | 341 | 1.06e-62 | 202 |
| Msa0868200 | AT1G62981.1 | 42.071 | 309 | 153 | 12 | 28 | 318 | 41 | 341 | 1.06e-62 | 202 |
| Msa0868200 | AT3G08600.1 | 32.550 | 298 | 161 | 13 | 33 | 313 | 37 | 311 | 1.19e-22 | 96.7 |
| Msa0868200 | AT4G23720.1 | 27.055 | 292 | 186 | 12 | 26 | 313 | 38 | 306 | 1.38e-18 | 85.1 |
| Msa0868200 | AT4G01140.1 | 27.986 | 293 | 185 | 13 | 27 | 316 | 28 | 297 | 1.18e-16 | 79.7 |
| Msa0868200 | AT1G62981.3 | 35.135 | 185 | 103 | 8 | 146 | 318 | 29 | 208 | 7.25e-16 | 75.5 |
Find 43 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAAAACTCATGGACATTT+TGG | 0.170821 | 6_1:+1717667 | Msa0868200:CDS |
| TTCCATTGACTTAGTCTTAT+CGG | 0.242691 | 6_1:-1717736 | None:intergenic |
| AGTACTATTGGTGCTGCTTT+AGG | 0.264423 | 6_1:+1717772 | Msa0868200:CDS |
| CCTTCAAAACTTACACATAA+AGG | 0.290832 | 6_1:-1717589 | None:intergenic |
| TTATTGTCATTGAAATTTCA+TGG | 0.299770 | 6_1:+1717067 | Msa0868200:CDS |
| AAGCTACCTTCAAATTTATC+AGG | 0.315618 | 6_1:+1717199 | Msa0868200:CDS |
| CAACTTGTTTCTCCAATTGT+TGG | 0.336972 | 6_1:+1717418 | Msa0868200:CDS |
| TAAGCTAAAATTCCAACAAT+TGG | 0.344113 | 6_1:-1717430 | None:intergenic |
| GTTGGTGTTGTTCTAGTTCC+AGG | 0.353242 | 6_1:-1717937 | None:intergenic |
| TTATGAAGAAGAAGCACTTC+AGG | 0.366104 | 6_1:+1717879 | Msa0868200:CDS |
| GCATAGAGTATAATAATAAT+TGG | 0.373049 | 6_1:+1717353 | Msa0868200:CDS |
| AAGGTATGGTGCAAAATTAA+AGG | 0.383254 | 6_1:+1717264 | Msa0868200:CDS |
| AAGGAGTTTCATCTTGGTAT+TGG | 0.399934 | 6_1:+1717283 | Msa0868200:CDS |
| ATTGCAGTTGGGAGTACTAT+TGG | 0.400361 | 6_1:+1717760 | Msa0868200:CDS |
| TTTCAAGAATCAAGAAGAAA+AGG | 0.407881 | 6_1:+1717552 | Msa0868200:CDS |
| TTGATGCCTGATAAATTTGA+AGG | 0.417038 | 6_1:-1717205 | None:intergenic |
| GCTTCAATTCCAAGTTGAAA+AGG | 0.422597 | 6_1:-1717487 | None:intergenic |
| ACACAAACATTTGTTGCTAA+AGG | 0.423104 | 6_1:-1717643 | None:intergenic |
| GCACTTCAGGTTTCAATGGT+TGG | 0.434477 | 6_1:+1717892 | Msa0868200:CDS |
| AGAAGCACTTCAGGTTTCAA+TGG | 0.442190 | 6_1:+1717888 | Msa0868200:CDS |
| GAAGGTAGCTTCACAGATTG+AGG | 0.451958 | 6_1:-1717187 | None:intergenic |
| CTTCAATTCCAAGTTGAAAA+GGG | 0.452206 | 6_1:-1717486 | None:intergenic |
| AAATTAAAGGAGTTTCATCT+TGG | 0.452708 | 6_1:+1717277 | Msa0868200:CDS |
| AACATTACTCTTTCAATACA+TGG | 0.463603 | 6_1:-1717319 | None:intergenic |
| TTTCAACTTGGAATTGAAGC+TGG | 0.480245 | 6_1:+1717490 | Msa0868200:CDS |
| TTAGACAAAGATTTCAAGAC+AGG | 0.484697 | 6_1:+1717160 | Msa0868200:CDS |
| GTTCTAGTTCCAGGTGCAGT+AGG | 0.488529 | 6_1:-1717928 | None:intergenic |
| GTCAATGGAAAATTGCAGTT+GGG | 0.491640 | 6_1:+1717749 | Msa0868200:CDS |
| GGTTAAGAAAAGGTCAAGAA+TGG | 0.493692 | 6_1:+1717837 | Msa0868200:CDS |
| AGCCGATAAGACTAAGTCAA+TGG | 0.499042 | 6_1:+1717734 | Msa0868200:CDS |
| GTTTGTGTTGCTAAAACTCA+TGG | 0.503467 | 6_1:+1717658 | Msa0868200:CDS |
| TGTGGAAGTTTAACAAGGTA+TGG | 0.509899 | 6_1:+1717250 | Msa0868200:CDS |
| AGTCAATGGAAAATTGCAGT+TGG | 0.516447 | 6_1:+1717748 | Msa0868200:CDS |
| TTCAAGAATCAAGAAGAAAA+GGG | 0.519947 | 6_1:+1717553 | Msa0868200:CDS |
| AAGGTCAAGAATGGTTCAGA+TGG | 0.524303 | 6_1:+1717846 | Msa0868200:CDS |
| TGAATGTGTGATCTCTTATG+AGG | 0.547320 | 6_1:-1717132 | None:intergenic |
| TGGTTGTTAGGGTTAAGAAA+AGG | 0.555158 | 6_1:+1717827 | Msa0868200:CDS |
| GTGAGAGCTCCTACTGCACC+TGG | 0.585262 | 6_1:+1717919 | Msa0868200:CDS |
| GATACTGTTAGATTTAGATG+TGG | 0.588960 | 6_1:+1717232 | Msa0868200:CDS |
| TTAGATGTGGAAGTTTAACA+AGG | 0.623871 | 6_1:+1717245 | Msa0868200:CDS |
| TAGTCATGTTGCTCAAGTGT+TGG | 0.655160 | 6_1:-1717955 | None:intergenic |
| AGTAAACCTCGTCATCAACG+AGG | 0.739646 | 6_1:-1717991 | None:intergenic |
| ATGTGTGATCTCTTATGAGG+AGG | 0.743160 | 6_1:-1717129 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTGTCATTGAAATTTCA+TGG | + | chr6_1:1717067-1717086 | Msa0868200:CDS | 20.0% |
| !! | GCATAGAGTATAATAATAAT+TGG | + | chr6_1:1717353-1717372 | Msa0868200:CDS | 20.0% |
| !! | TTATTGTCATTGAAATTTCA+TGG | + | chr6_1:1717067-1717086 | Msa0868200:CDS | 20.0% |
| !! | GCATAGAGTATAATAATAAT+TGG | + | chr6_1:1717353-1717372 | Msa0868200:CDS | 20.0% |
| ! | AAATTAAAGGAGTTTCATCT+TGG | + | chr6_1:1717277-1717296 | Msa0868200:CDS | 25.0% |
| ! | AACATTACTCTTTCAATACA+TGG | - | chr6_1:1717322-1717341 | None:intergenic | 25.0% |
| ! | TAAGCTAAAATTCCAACAAT+TGG | - | chr6_1:1717433-1717452 | None:intergenic | 25.0% |
| ! | TTTCAAGAATCAAGAAGAAA+AGG | + | chr6_1:1717552-1717571 | Msa0868200:CDS | 25.0% |
| ! | TTCAAGAATCAAGAAGAAAA+GGG | + | chr6_1:1717553-1717572 | Msa0868200:CDS | 25.0% |
| ! | AAATTAAAGGAGTTTCATCT+TGG | + | chr6_1:1717277-1717296 | Msa0868200:CDS | 25.0% |
| ! | AACATTACTCTTTCAATACA+TGG | - | chr6_1:1717322-1717341 | None:intergenic | 25.0% |
| ! | TAAGCTAAAATTCCAACAAT+TGG | - | chr6_1:1717433-1717452 | None:intergenic | 25.0% |
| ! | TTTCAAGAATCAAGAAGAAA+AGG | + | chr6_1:1717552-1717571 | Msa0868200:CDS | 25.0% |
| ! | TTCAAGAATCAAGAAGAAAA+GGG | + | chr6_1:1717553-1717572 | Msa0868200:CDS | 25.0% |
| TTAGACAAAGATTTCAAGAC+AGG | + | chr6_1:1717160-1717179 | Msa0868200:CDS | 30.0% | |
| AAGCTACCTTCAAATTTATC+AGG | + | chr6_1:1717199-1717218 | Msa0868200:CDS | 30.0% | |
| TTGATGCCTGATAAATTTGA+AGG | - | chr6_1:1717208-1717227 | None:intergenic | 30.0% | |
| GATACTGTTAGATTTAGATG+TGG | + | chr6_1:1717232-1717251 | Msa0868200:CDS | 30.0% | |
| TTAGATGTGGAAGTTTAACA+AGG | + | chr6_1:1717245-1717264 | Msa0868200:CDS | 30.0% | |
| AAGGTATGGTGCAAAATTAA+AGG | + | chr6_1:1717264-1717283 | Msa0868200:CDS | 30.0% | |
| ! | CTTCAATTCCAAGTTGAAAA+GGG | - | chr6_1:1717489-1717508 | None:intergenic | 30.0% |
| CCTTCAAAACTTACACATAA+AGG | - | chr6_1:1717592-1717611 | None:intergenic | 30.0% | |
| !! | CCTTTATGTGTAAGTTTTGA+AGG | + | chr6_1:1717589-1717608 | Msa0868200:CDS | 30.0% |
| !!! | TGTGTAAGTTTTGAAGGAAA+TGG | + | chr6_1:1717595-1717614 | Msa0868200:CDS | 30.0% |
| ! | ACACAAACATTTGTTGCTAA+AGG | - | chr6_1:1717646-1717665 | None:intergenic | 30.0% |
| !! | TTCCATTGACTTAGTCTTAT+CGG | - | chr6_1:1717739-1717758 | None:intergenic | 30.0% |
| !!! | AGGTTTACTTTTTGTAGCAA+TGG | + | chr6_1:1717807-1717826 | Msa0868200:CDS | 30.0% |
| ! | TTTTTGTAGCAATGGTTGTT+AGG | + | chr6_1:1717815-1717834 | Msa0868200:CDS | 30.0% |
| ! | TTTTGTAGCAATGGTTGTTA+GGG | + | chr6_1:1717816-1717835 | Msa0868200:CDS | 30.0% |
| TTAGACAAAGATTTCAAGAC+AGG | + | chr6_1:1717160-1717179 | Msa0868200:CDS | 30.0% | |
| AAGCTACCTTCAAATTTATC+AGG | + | chr6_1:1717199-1717218 | Msa0868200:CDS | 30.0% | |
| TTGATGCCTGATAAATTTGA+AGG | - | chr6_1:1717208-1717227 | None:intergenic | 30.0% | |
| GATACTGTTAGATTTAGATG+TGG | + | chr6_1:1717232-1717251 | Msa0868200:CDS | 30.0% | |
| TTAGATGTGGAAGTTTAACA+AGG | + | chr6_1:1717245-1717264 | Msa0868200:CDS | 30.0% | |
| AAGGTATGGTGCAAAATTAA+AGG | + | chr6_1:1717264-1717283 | Msa0868200:CDS | 30.0% | |
| ! | CTTCAATTCCAAGTTGAAAA+GGG | - | chr6_1:1717489-1717508 | None:intergenic | 30.0% |
| CCTTCAAAACTTACACATAA+AGG | - | chr6_1:1717592-1717611 | None:intergenic | 30.0% | |
| !! | CCTTTATGTGTAAGTTTTGA+AGG | + | chr6_1:1717589-1717608 | Msa0868200:CDS | 30.0% |
| !!! | TGTGTAAGTTTTGAAGGAAA+TGG | + | chr6_1:1717595-1717614 | Msa0868200:CDS | 30.0% |
| ! | ACACAAACATTTGTTGCTAA+AGG | - | chr6_1:1717646-1717665 | None:intergenic | 30.0% |
| !! | TTCCATTGACTTAGTCTTAT+CGG | - | chr6_1:1717739-1717758 | None:intergenic | 30.0% |
| !!! | AGGTTTACTTTTTGTAGCAA+TGG | + | chr6_1:1717807-1717826 | Msa0868200:CDS | 30.0% |
| ! | TTTTTGTAGCAATGGTTGTT+AGG | + | chr6_1:1717815-1717834 | Msa0868200:CDS | 30.0% |
| ! | TTTTGTAGCAATGGTTGTTA+GGG | + | chr6_1:1717816-1717835 | Msa0868200:CDS | 30.0% |
| TGAATGTGTGATCTCTTATG+AGG | - | chr6_1:1717135-1717154 | None:intergenic | 35.0% | |
| TGTGGAAGTTTAACAAGGTA+TGG | + | chr6_1:1717250-1717269 | Msa0868200:CDS | 35.0% | |
| AAGGAGTTTCATCTTGGTAT+TGG | + | chr6_1:1717283-1717302 | Msa0868200:CDS | 35.0% | |
| ! | CAACTTGTTTCTCCAATTGT+TGG | + | chr6_1:1717418-1717437 | Msa0868200:CDS | 35.0% |
| ! | AGTAGTAACCCTTTTCAACT+TGG | + | chr6_1:1717478-1717497 | Msa0868200:CDS | 35.0% |
| ! | GCTTCAATTCCAAGTTGAAA+AGG | - | chr6_1:1717490-1717509 | None:intergenic | 35.0% |
| TTTCAACTTGGAATTGAAGC+TGG | + | chr6_1:1717490-1717509 | Msa0868200:CDS | 35.0% | |
| ! | GTTTGTGTTGCTAAAACTCA+TGG | + | chr6_1:1717658-1717677 | Msa0868200:CDS | 35.0% |
| ! | GCTAAAACTCATGGACATTT+TGG | + | chr6_1:1717667-1717686 | Msa0868200:CDS | 35.0% |
| !!! | AACTCATGGACATTTTGGTT+TGG | + | chr6_1:1717672-1717691 | Msa0868200:CDS | 35.0% |
| AGTCAATGGAAAATTGCAGT+TGG | + | chr6_1:1717748-1717767 | Msa0868200:CDS | 35.0% | |
| GTCAATGGAAAATTGCAGTT+GGG | + | chr6_1:1717749-1717768 | Msa0868200:CDS | 35.0% | |
| !! | GCTTTAGGTGCTTTTCTTTT+AGG | + | chr6_1:1717787-1717806 | Msa0868200:CDS | 35.0% |
| TGGTTGTTAGGGTTAAGAAA+AGG | + | chr6_1:1717827-1717846 | Msa0868200:CDS | 35.0% | |
| GGTTAAGAAAAGGTCAAGAA+TGG | + | chr6_1:1717837-1717856 | Msa0868200:CDS | 35.0% | |
| !! | TTATGAAGAAGAAGCACTTC+AGG | + | chr6_1:1717879-1717898 | Msa0868200:CDS | 35.0% |
| TGAATGTGTGATCTCTTATG+AGG | - | chr6_1:1717135-1717154 | None:intergenic | 35.0% | |
| TGTGGAAGTTTAACAAGGTA+TGG | + | chr6_1:1717250-1717269 | Msa0868200:CDS | 35.0% | |
| AAGGAGTTTCATCTTGGTAT+TGG | + | chr6_1:1717283-1717302 | Msa0868200:CDS | 35.0% | |
| ! | CAACTTGTTTCTCCAATTGT+TGG | + | chr6_1:1717418-1717437 | Msa0868200:CDS | 35.0% |
| ! | AGTAGTAACCCTTTTCAACT+TGG | + | chr6_1:1717478-1717497 | Msa0868200:CDS | 35.0% |
| ! | GCTTCAATTCCAAGTTGAAA+AGG | - | chr6_1:1717490-1717509 | None:intergenic | 35.0% |
| TTTCAACTTGGAATTGAAGC+TGG | + | chr6_1:1717490-1717509 | Msa0868200:CDS | 35.0% | |
| ! | GTTTGTGTTGCTAAAACTCA+TGG | + | chr6_1:1717658-1717677 | Msa0868200:CDS | 35.0% |
| ! | GCTAAAACTCATGGACATTT+TGG | + | chr6_1:1717667-1717686 | Msa0868200:CDS | 35.0% |
| !!! | AACTCATGGACATTTTGGTT+TGG | + | chr6_1:1717672-1717691 | Msa0868200:CDS | 35.0% |
| AGTCAATGGAAAATTGCAGT+TGG | + | chr6_1:1717748-1717767 | Msa0868200:CDS | 35.0% | |
| GTCAATGGAAAATTGCAGTT+GGG | + | chr6_1:1717749-1717768 | Msa0868200:CDS | 35.0% | |
| !! | GCTTTAGGTGCTTTTCTTTT+AGG | + | chr6_1:1717787-1717806 | Msa0868200:CDS | 35.0% |
| TGGTTGTTAGGGTTAAGAAA+AGG | + | chr6_1:1717827-1717846 | Msa0868200:CDS | 35.0% | |
| GGTTAAGAAAAGGTCAAGAA+TGG | + | chr6_1:1717837-1717856 | Msa0868200:CDS | 35.0% | |
| !! | TTATGAAGAAGAAGCACTTC+AGG | + | chr6_1:1717879-1717898 | Msa0868200:CDS | 35.0% |
| ATGTGTGATCTCTTATGAGG+AGG | - | chr6_1:1717132-1717151 | None:intergenic | 40.0% | |
| AGCCGATAAGACTAAGTCAA+TGG | + | chr6_1:1717734-1717753 | Msa0868200:CDS | 40.0% | |
| !! | ATTGCAGTTGGGAGTACTAT+TGG | + | chr6_1:1717760-1717779 | Msa0868200:CDS | 40.0% |
| !! | AGTACTATTGGTGCTGCTTT+AGG | + | chr6_1:1717772-1717791 | Msa0868200:CDS | 40.0% |
| AAGGTCAAGAATGGTTCAGA+TGG | + | chr6_1:1717846-1717865 | Msa0868200:CDS | 40.0% | |
| !! | AGAAGCACTTCAGGTTTCAA+TGG | + | chr6_1:1717888-1717907 | Msa0868200:CDS | 40.0% |
| TAGTCATGTTGCTCAAGTGT+TGG | - | chr6_1:1717958-1717977 | None:intergenic | 40.0% | |
| ATGTGTGATCTCTTATGAGG+AGG | - | chr6_1:1717132-1717151 | None:intergenic | 40.0% | |
| AGCCGATAAGACTAAGTCAA+TGG | + | chr6_1:1717734-1717753 | Msa0868200:CDS | 40.0% | |
| !! | ATTGCAGTTGGGAGTACTAT+TGG | + | chr6_1:1717760-1717779 | Msa0868200:CDS | 40.0% |
| !! | AGTACTATTGGTGCTGCTTT+AGG | + | chr6_1:1717772-1717791 | Msa0868200:CDS | 40.0% |
| AAGGTCAAGAATGGTTCAGA+TGG | + | chr6_1:1717846-1717865 | Msa0868200:CDS | 40.0% | |
| !! | AGAAGCACTTCAGGTTTCAA+TGG | + | chr6_1:1717888-1717907 | Msa0868200:CDS | 40.0% |
| TAGTCATGTTGCTCAAGTGT+TGG | - | chr6_1:1717958-1717977 | None:intergenic | 40.0% | |
| GAAGGTAGCTTCACAGATTG+AGG | - | chr6_1:1717190-1717209 | None:intergenic | 45.0% | |
| ! | GCACTTCAGGTTTCAATGGT+TGG | + | chr6_1:1717892-1717911 | Msa0868200:CDS | 45.0% |
| !! | GTTGGTGTTGTTCTAGTTCC+AGG | - | chr6_1:1717940-1717959 | None:intergenic | 45.0% |
| GAAGGTAGCTTCACAGATTG+AGG | - | chr6_1:1717190-1717209 | None:intergenic | 45.0% | |
| ! | GCACTTCAGGTTTCAATGGT+TGG | + | chr6_1:1717892-1717911 | Msa0868200:CDS | 45.0% |
| !! | GTTGGTGTTGTTCTAGTTCC+AGG | - | chr6_1:1717940-1717959 | None:intergenic | 45.0% |
| !! | GTTCTAGTTCCAGGTGCAGT+AGG | - | chr6_1:1717931-1717950 | None:intergenic | 50.0% |
| !! | GTTCTAGTTCCAGGTGCAGT+AGG | - | chr6_1:1717931-1717950 | None:intergenic | 50.0% |
| GTGAGAGCTCCTACTGCACC+TGG | + | chr6_1:1717919-1717938 | Msa0868200:CDS | 60.0% | |
| GTGAGAGCTCCTACTGCACC+TGG | + | chr6_1:1717919-1717938 | Msa0868200:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 1717028 | 1717999 | 1717028 | ID=Msa0868200;Name=Msa0868200 |
| chr6_1 | mRNA | 1717028 | 1717999 | 1717028 | ID=Msa0868200-mRNA-1;Parent=Msa0868200;Name=Msa0868200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|323 |
| chr6_1 | exon | 1717028 | 1717999 | 1717028 | ID=Msa0868200-mRNA-1:exon:445;Parent=Msa0868200-mRNA-1 |
| chr6_1 | CDS | 1717028 | 1717999 | 1717028 | ID=Msa0868200-mRNA-1:cds;Parent=Msa0868200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
