AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1446810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1446810 MtrunA17_Chr2g0327951 97.297 148 4 0 1 148 38 185 4.14e-101 287
Msa1446810 MtrunA17_Chr4g0031041 91.667 132 10 1 18 148 14 145 4.42e-80 233
Msa1446810 MtrunA17_Chr4g0035621 86.842 152 16 2 1 148 1 152 9.04e-79 229
Msa1446810 MtrunA17_Chr4g0031001 86.667 150 16 2 1 148 1 148 5.39e-77 225
Msa1446810 MtrunA17_Chr4g0031651 86.000 150 17 2 1 148 1 148 8.18e-77 224
Msa1446810 MtrunA17_Chr2g0327931 87.023 131 13 1 22 148 23 153 1.01e-76 224
Msa1446810 MtrunA17_Chr4g0032301 91.339 127 9 1 22 148 24 148 1.19e-76 224
Msa1446810 MtrunA17_Chr7g0272611 81.061 132 25 0 9 140 13 144 1.80e-74 218
Msa1446810 MtrunA17_Chr8g0379311 89.394 132 12 1 1 130 1 132 6.19e-72 212
Msa1446810 MtrunA17_Chr7g0259151 73.810 126 31 1 2 127 4 127 8.33e-61 184
Msa1446810 MtrunA17_Chr7g0268831 74.400 125 29 1 3 127 6 127 2.87e-60 182
Msa1446810 MtrunA17_Chr7g0273351 73.810 126 29 2 3 127 2 124 9.59e-60 181
Msa1446810 MtrunA17_Chr2g0319191 78.378 111 24 0 17 127 11 121 4.05e-59 179
Msa1446810 MtrunA17_Chr7g0273331 73.810 126 29 2 3 127 58 180 6.62e-59 181
Msa1446810 MtrunA17_Chr2g0319181 79.630 108 22 0 20 127 14 121 1.59e-58 177
Msa1446810 MtrunA17_Chr6g0449661 65.354 127 30 3 22 147 85 198 3.20e-50 159
Msa1446810 MtrunA17_Chr3g0119971 64.286 126 31 3 23 147 81 193 2.11e-49 157
Msa1446810 MtrunA17_Chr7g0273341 63.566 129 36 2 12 140 48 165 1.59e-46 149
Msa1446810 MtrunA17_Chr4g0031031 74.286 105 22 1 43 147 10 109 1.48e-45 144
Msa1446810 MtrunA17_Chr1g0148961 60.177 113 43 2 19 130 23 134 5.41e-37 123
Msa1446810 MtrunA17_Chr1g0148951 60.177 113 43 2 19 130 23 134 5.41e-37 123
Msa1446810 MtrunA17_Chr1g0211651 57.983 119 48 2 9 126 10 127 7.50e-37 123
Msa1446810 MtrunA17_Chr1g0184901 62.500 104 37 2 24 126 28 130 2.04e-35 119
Msa1446810 MtrunA17_Chr1g0183701 58.904 73 30 0 65 137 30 102 4.98e-25 92.0
Msa1446810 MtrunA17_Chr4g0024701 49.524 105 33 2 22 126 26 110 1.03e-22 86.7
Msa1446810 MtrunA17_Chr4g0000531 71.111 45 13 0 83 127 5 49 8.81e-16 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1446810 AT5G02560.1 82.353 153 22 2 1 148 1 153 9.71e-80 233
Msa1446810 AT5G27670.1 77.551 147 32 1 2 148 5 150 5.47e-76 223
Msa1446810 AT5G02560.2 71.186 177 22 3 1 148 1 177 9.83e-75 221
Msa1446810 AT5G59870.1 72.667 150 39 1 1 148 1 150 5.70e-73 215
Msa1446810 AT1G51060.1 80.180 111 22 0 17 127 11 121 2.39e-60 182
Msa1446810 AT1G08880.1 72.800 125 30 1 7 127 3 127 9.48e-59 179
Msa1446810 AT4G27230.2 77.477 111 25 0 17 127 11 121 1.33e-58 178
Msa1446810 AT4G27230.1 77.477 111 25 0 17 127 11 121 1.33e-58 178
Msa1446810 AT5G54640.1 78.378 111 24 0 17 127 11 121 1.71e-58 178
Msa1446810 AT1G54690.1 73.770 122 28 1 10 127 6 127 2.38e-58 178
Msa1446810 AT3G20670.1 77.477 111 25 0 17 127 11 121 2.95e-58 177
Msa1446810 AT2G38810.1 59.292 113 44 2 15 126 21 132 7.93e-37 123
Msa1446810 AT2G38810.4 59.292 113 44 2 15 126 21 132 7.93e-37 123
Msa1446810 AT2G38810.3 59.292 113 44 2 15 126 21 132 7.93e-37 123
Msa1446810 AT2G38810.2 59.292 113 44 2 15 126 21 132 7.93e-37 123
Msa1446810 AT1G52740.1 62.857 105 37 2 23 126 27 130 1.40e-35 120
Msa1446810 AT3G54560.1 58.716 109 43 2 23 130 29 136 1.99e-34 117
Msa1446810 AT3G54560.2 58.716 109 43 2 23 130 29 136 1.99e-34 117
Msa1446810 AT4G13570.1 48.913 92 45 2 30 120 28 118 1.70e-20 81.3
Msa1446810 AT4G13570.2 48.352 91 45 2 31 120 35 124 4.77e-20 80.5

Find 59 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAGCCTTCTTTGGAGATT+TGG 0.253652 tig0031500:+966 None:intergenic
GAAGCCTTCTCATTCTTCTT+AGG 0.258486 tig0031500:+1018 None:intergenic
AACTAAATCTAAGCCTTCTT+TGG 0.259152 tig0031500:+958 None:intergenic
TTCTTCTTAGGTAAAAGAAT+TGG 0.279364 tig0031500:+1030 None:intergenic
AAGGCTTAGATTTAGTTTCT+AGG 0.281906 tig0031500:-952 Msa1446810:exon
TAGATTTAGTTTCTAGGGTT+TGG 0.284472 tig0031500:-946 Msa1446810:three_prime_UTR
CTTGTCACCGCCTTCTTCCT+TGG 0.286829 tig0031500:+1431 None:intergenic
GTGTTTGTAGCAATGCATTT+TGG 0.302728 tig0031500:-865 Msa1446810:three_prime_UTR
ACCAGCTCCTTTCTTCGTCT+TGG 0.348361 tig0031500:+1469 None:intergenic
ATTATTTCCCTCGATATGAT+TGG 0.357937 tig0031500:+660 None:intergenic
GGTAGCCTTGGATGGAGATT+TGG 0.359896 tig0031500:+987 None:intergenic
AAAAGAATTGGGTTGATGTT+TGG 0.366899 tig0031500:+1042 None:intergenic
CTTTGGAGATTTGGTAGCCT+TGG 0.379306 tig0031500:+975 None:intergenic
CAATTTCCAGTTGGAAGAAT+CGG 0.397925 tig0031500:-1389 Msa1446810:CDS
GCTCATAACAATAATTAATC+AGG 0.407177 tig0031500:+730 None:intergenic
AGAACAGCTGCAAGATAAAC+AGG 0.409350 tig0031500:+1317 None:intergenic
TCTTCTTAGGTAAAAGAATT+GGG 0.411045 tig0031500:+1031 None:intergenic
ATGTAAGAATTTGTGAGAAA+TGG 0.420114 tig0031500:+1536 None:intergenic
TTGTGTTCAGGTTCTTGAAT+TGG 0.420978 tig0031500:-1193 Msa1446810:intron
TACCGACCGATTCTTCCAAC+TGG 0.449917 tig0031500:+1383 None:intergenic
TACGCTCAGCGTGTTGGTAC+TGG 0.452334 tig0031500:-1344 Msa1446810:CDS
CACGTGACAACAAGAAGAAC+AGG 0.464610 tig0031500:-1158 Msa1446810:CDS
TGGAAATTGAAGACCAGCTC+TGG 0.468882 tig0031500:+1403 None:intergenic
AGGCTTAGATTTAGTTTCTA+GGG 0.470083 tig0031500:-951 Msa1446810:exon
ATCTCACTGCTTTCTGATGT+AGG 0.470288 tig0031500:-842 Msa1446810:three_prime_UTR
AAAGGAGCTGGTGGAAGGAA+AGG 0.477487 tig0031500:-1458 Msa1446810:CDS
GCAAGCACCAAGACGAAGAA+AGG 0.482883 tig0031500:-1476 Msa1446810:CDS
GTTCAGGTTCTTGAATTGGC+TGG 0.491391 tig0031500:-1189 Msa1446810:intron
CATCCCTAGGCATTTGCTGT+TGG 0.495579 tig0031500:-1133 Msa1446810:CDS
GTGTGATGATGAGATGAAAG+TGG 0.501284 tig0031500:+1562 None:intergenic
GAACTTGGAAAGTTGCTAGC+TGG 0.514674 tig0031500:-1093 Msa1446810:CDS
GGCTACCAAATCTCCAAAGA+AGG 0.519492 tig0031500:-971 Msa1446810:CDS
GGAGATTTGGTAGCCTTGGA+TGG 0.524077 tig0031500:+979 None:intergenic
GTGAGGAATGATGAAGAACT+TGG 0.529342 tig0031500:-1108 Msa1446810:CDS
ATCGGTCGGTACTTGAAGAA+AGG 0.536042 tig0031500:-1371 Msa1446810:CDS
GAAAGGTGGTCCAAGGAAGA+AGG 0.553269 tig0031500:-1441 Msa1446810:CDS
TTTACCTAAGAAGAATGAGA+AGG 0.555333 tig0031500:-1022 Msa1446810:CDS
CGAAGAAAGGAGCTGGTGGA+AGG 0.557443 tig0031500:-1463 Msa1446810:CDS
TCTTGAATATCTTGCTGCTG+AGG 0.561765 tig0031500:-1297 Msa1446810:intron
AAATTGAAGACCAGCTCTGG+TGG 0.562253 tig0031500:+1406 None:intergenic
GTGACAAGATCCACCAGAGC+TGG 0.571539 tig0031500:-1416 Msa1446810:CDS
ACTGCCAACAGCAAATGCCT+AGG 0.578012 tig0031500:+1129 None:intergenic
ACCAAGACGAAGAAAGGAGC+TGG 0.579581 tig0031500:-1470 Msa1446810:CDS
TGAGTCTCCAATCATATCGA+GGG 0.584973 tig0031500:-667 Msa1446810:three_prime_UTR
GGAAGATACGCTCAGCGTGT+TGG 0.585684 tig0031500:-1350 Msa1446810:CDS
TGCTACCAAATCTCCATCCA+AGG 0.591170 tig0031500:-992 Msa1446810:CDS
GCTGGTCTTCAATTTCCAGT+TGG 0.598252 tig0031500:-1398 Msa1446810:CDS
GTGGAAGGAAAGGTGGTCCA+AGG 0.602831 tig0031500:-1448 Msa1446810:CDS
GGCATTTGCTGTTGGCAGTG+AGG 0.603106 tig0031500:-1125 Msa1446810:CDS
CTGCCAACAGCAAATGCCTA+GGG 0.606589 tig0031500:+1130 None:intergenic
TTGAGTCTCCAATCATATCG+AGG 0.616069 tig0031500:-668 Msa1446810:three_prime_UTR
AGAAGAACAGGATCATCCCT+AGG 0.619121 tig0031500:-1146 Msa1446810:CDS
TTCCAGTTGGAAGAATCGGT+CGG 0.638316 tig0031500:-1385 Msa1446810:CDS
GGAGCTGGTGGAAGGAAAGG+TGG 0.644393 tig0031500:-1455 Msa1446810:CDS
AAGACGAAGAAAGGAGCTGG+TGG 0.662071 tig0031500:-1467 Msa1446810:CDS
AGGGAAATAATGAGAAATTG+CGG 0.666410 tig0031500:-648 Msa1446810:three_prime_UTR
GCTGGAGTTACAATTGCACA+TGG 0.698871 tig0031500:-1075 Msa1446810:CDS
AGGTGGTCCAAGGAAGAAGG+CGG 0.714301 tig0031500:-1438 Msa1446810:CDS
GGAGTTACAATTGCACATGG+TGG 0.781867 tig0031500:-1072 Msa1446810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCAATTTCATCAAAATTA+GGG + tig0031500:984-1003 None:intergenic 15.0%
!! ATTTCAATTTCATCAAAATT+AGG + tig0031500:985-1004 None:intergenic 15.0%
!! TTTCAATTTCATCAAAATTA+GGG + tig0031500:984-1003 None:intergenic 15.0%
!! ATTTCAATTTCATCAAAATT+AGG + tig0031500:985-1004 None:intergenic 15.0%
!! CAAATTTGAAAATCAAAAGA+GGG + tig0031500:952-971 None:intergenic 20.0%
!! TCAAATTTGAAAATCAAAAG+AGG + tig0031500:953-972 None:intergenic 20.0%
!! CAAATTTGAAAATCAAAAGA+GGG + tig0031500:952-971 None:intergenic 20.0%
!! TCAAATTTGAAAATCAAAAG+AGG + tig0031500:953-972 None:intergenic 20.0%
! ATGTAAGAATTTGTGAGAAA+TGG + tig0031500:670-689 None:intergenic 25.0%
!!! TTGAAATTTGATTTGTGTTC+AGG - tig0031500:998-1017 Msa1446810:CDS 25.0%
! TCTTCTTAGGTAAAAGAATT+GGG + tig0031500:1175-1194 None:intergenic 25.0%
! TTCTTCTTAGGTAAAAGAAT+TGG + tig0031500:1176-1195 None:intergenic 25.0%
!!! TTGGTGATTTAGTTTTTGTT+TGG - tig0031500:1276-1295 Msa1446810:intron 25.0%
! GCTCATAACAATAATTAATC+AGG + tig0031500:1476-1495 None:intergenic 25.0%
! ATGTAAGAATTTGTGAGAAA+TGG + tig0031500:670-689 None:intergenic 25.0%
!!! TTGAAATTTGATTTGTGTTC+AGG - tig0031500:998-1017 Msa1446810:CDS 25.0%
! TCTTCTTAGGTAAAAGAATT+GGG + tig0031500:1175-1194 None:intergenic 25.0%
! TTCTTCTTAGGTAAAAGAAT+TGG + tig0031500:1176-1195 None:intergenic 25.0%
!!! TTGGTGATTTAGTTTTTGTT+TGG - tig0031500:1276-1295 Msa1446810:intron 25.0%
! GCTCATAACAATAATTAATC+AGG + tig0031500:1476-1495 None:intergenic 25.0%
GTAGCAAAAAATCTCAGAAA+TGG - tig0031500:702-721 Msa1446810:three_prime_UTR 30.0%
!! AAAAGAATTGGGTTGATGTT+TGG + tig0031500:1164-1183 None:intergenic 30.0%
TTTACCTAAGAAGAATGAGA+AGG - tig0031500:1181-1200 Msa1446810:CDS 30.0%
AACTAAATCTAAGCCTTCTT+TGG + tig0031500:1248-1267 None:intergenic 30.0%
! AAGGCTTAGATTTAGTTTCT+AGG - tig0031500:1251-1270 Msa1446810:intron 30.0%
! AGGCTTAGATTTAGTTTCTA+GGG - tig0031500:1252-1271 Msa1446810:intron 30.0%
!! TAGATTTAGTTTCTAGGGTT+TGG - tig0031500:1257-1276 Msa1446810:intron 30.0%
ATTATTTCCCTCGATATGAT+TGG + tig0031500:1546-1565 None:intergenic 30.0%
AGGGAAATAATGAGAAATTG+CGG - tig0031500:1555-1574 Msa1446810:five_prime_UTR 30.0%
GTAGCAAAAAATCTCAGAAA+TGG - tig0031500:702-721 Msa1446810:three_prime_UTR 30.0%
!! AAAAGAATTGGGTTGATGTT+TGG + tig0031500:1164-1183 None:intergenic 30.0%
TTTACCTAAGAAGAATGAGA+AGG - tig0031500:1181-1200 Msa1446810:CDS 30.0%
AACTAAATCTAAGCCTTCTT+TGG + tig0031500:1248-1267 None:intergenic 30.0%
! AAGGCTTAGATTTAGTTTCT+AGG - tig0031500:1251-1270 Msa1446810:intron 30.0%
! AGGCTTAGATTTAGTTTCTA+GGG - tig0031500:1252-1271 Msa1446810:intron 30.0%
!! TAGATTTAGTTTCTAGGGTT+TGG - tig0031500:1257-1276 Msa1446810:intron 30.0%
ATTATTTCCCTCGATATGAT+TGG + tig0031500:1546-1565 None:intergenic 30.0%
AGGGAAATAATGAGAAATTG+CGG - tig0031500:1555-1574 Msa1446810:five_prime_UTR 30.0%
CAATTTCCAGTTGGAAGAAT+CGG - tig0031500:814-833 Msa1446810:three_prime_UTR 35.0%
! TTGTGTTCAGGTTCTTGAAT+TGG - tig0031500:1010-1029 Msa1446810:CDS 35.0%
! GTGTTTGTAGCAATGCATTT+TGG - tig0031500:1338-1357 Msa1446810:CDS 35.0%
!! CTACTTTTCGCAATTACTAC+TGG - tig0031500:1495-1514 Msa1446810:exon 35.0%
CAATTTCCAGTTGGAAGAAT+CGG - tig0031500:814-833 Msa1446810:three_prime_UTR 35.0%
! TTGTGTTCAGGTTCTTGAAT+TGG - tig0031500:1010-1029 Msa1446810:CDS 35.0%
! GTGTTTGTAGCAATGCATTT+TGG - tig0031500:1338-1357 Msa1446810:CDS 35.0%
!! CTACTTTTCGCAATTACTAC+TGG - tig0031500:1495-1514 Msa1446810:exon 35.0%
! GTGTGATGATGAGATGAAAG+TGG + tig0031500:644-663 None:intergenic 40.0%
AGAACAGCTGCAAGATAAAC+AGG + tig0031500:889-908 None:intergenic 40.0%
TCTTGAATATCTTGCTGCTG+AGG - tig0031500:906-925 Msa1446810:three_prime_UTR 40.0%
GTGAGGAATGATGAAGAACT+TGG - tig0031500:1095-1114 Msa1446810:CDS 40.0%
GAAGCCTTCTCATTCTTCTT+AGG + tig0031500:1188-1207 None:intergenic 40.0%
! CTAAGCCTTCTTTGGAGATT+TGG + tig0031500:1240-1259 None:intergenic 40.0%
ATCTCACTGCTTTCTGATGT+AGG - tig0031500:1361-1380 Msa1446810:CDS 40.0%
TTGAGTCTCCAATCATATCG+AGG - tig0031500:1535-1554 Msa1446810:five_prime_UTR 40.0%
TGAGTCTCCAATCATATCGA+GGG - tig0031500:1536-1555 Msa1446810:five_prime_UTR 40.0%
! GTGTGATGATGAGATGAAAG+TGG + tig0031500:644-663 None:intergenic 40.0%
AGAACAGCTGCAAGATAAAC+AGG + tig0031500:889-908 None:intergenic 40.0%
TCTTGAATATCTTGCTGCTG+AGG - tig0031500:906-925 Msa1446810:three_prime_UTR 40.0%
GTGAGGAATGATGAAGAACT+TGG - tig0031500:1095-1114 Msa1446810:CDS 40.0%
GAAGCCTTCTCATTCTTCTT+AGG + tig0031500:1188-1207 None:intergenic 40.0%
! CTAAGCCTTCTTTGGAGATT+TGG + tig0031500:1240-1259 None:intergenic 40.0%
ATCTCACTGCTTTCTGATGT+AGG - tig0031500:1361-1380 Msa1446810:CDS 40.0%
TTGAGTCTCCAATCATATCG+AGG - tig0031500:1535-1554 Msa1446810:five_prime_UTR 40.0%
TGAGTCTCCAATCATATCGA+GGG - tig0031500:1536-1555 Msa1446810:five_prime_UTR 40.0%
! AAATTGAAGACCAGCTCTGG+TGG + tig0031500:800-819 None:intergenic 45.0%
TGGAAATTGAAGACCAGCTC+TGG + tig0031500:803-822 None:intergenic 45.0%
!! GCTGGTCTTCAATTTCCAGT+TGG - tig0031500:805-824 Msa1446810:three_prime_UTR 45.0%
TTCCAGTTGGAAGAATCGGT+CGG - tig0031500:818-837 Msa1446810:three_prime_UTR 45.0%
ATCGGTCGGTACTTGAAGAA+AGG - tig0031500:832-851 Msa1446810:three_prime_UTR 45.0%
! GTTCAGGTTCTTGAATTGGC+TGG - tig0031500:1014-1033 Msa1446810:CDS 45.0%
CACGTGACAACAAGAAGAAC+AGG - tig0031500:1045-1064 Msa1446810:CDS 45.0%
AGAAGAACAGGATCATCCCT+AGG - tig0031500:1057-1076 Msa1446810:CDS 45.0%
GAACTTGGAAAGTTGCTAGC+TGG - tig0031500:1110-1129 Msa1446810:CDS 45.0%
GCTGGAGTTACAATTGCACA+TGG - tig0031500:1128-1147 Msa1446810:CDS 45.0%
GGAGTTACAATTGCACATGG+TGG - tig0031500:1131-1150 Msa1446810:CDS 45.0%
TGCTACCAAATCTCCATCCA+AGG - tig0031500:1211-1230 Msa1446810:intron 45.0%
! CTTTGGAGATTTGGTAGCCT+TGG + tig0031500:1231-1250 None:intergenic 45.0%
GGCTACCAAATCTCCAAAGA+AGG - tig0031500:1232-1251 Msa1446810:intron 45.0%
! AAATTGAAGACCAGCTCTGG+TGG + tig0031500:800-819 None:intergenic 45.0%
TGGAAATTGAAGACCAGCTC+TGG + tig0031500:803-822 None:intergenic 45.0%
!! GCTGGTCTTCAATTTCCAGT+TGG - tig0031500:805-824 Msa1446810:three_prime_UTR 45.0%
TTCCAGTTGGAAGAATCGGT+CGG - tig0031500:818-837 Msa1446810:three_prime_UTR 45.0%
ATCGGTCGGTACTTGAAGAA+AGG - tig0031500:832-851 Msa1446810:three_prime_UTR 45.0%
! GTTCAGGTTCTTGAATTGGC+TGG - tig0031500:1014-1033 Msa1446810:CDS 45.0%
CACGTGACAACAAGAAGAAC+AGG - tig0031500:1045-1064 Msa1446810:CDS 45.0%
AGAAGAACAGGATCATCCCT+AGG - tig0031500:1057-1076 Msa1446810:CDS 45.0%
GAACTTGGAAAGTTGCTAGC+TGG - tig0031500:1110-1129 Msa1446810:CDS 45.0%
GCTGGAGTTACAATTGCACA+TGG - tig0031500:1128-1147 Msa1446810:CDS 45.0%
GGAGTTACAATTGCACATGG+TGG - tig0031500:1131-1150 Msa1446810:CDS 45.0%
TGCTACCAAATCTCCATCCA+AGG - tig0031500:1211-1230 Msa1446810:intron 45.0%
! CTTTGGAGATTTGGTAGCCT+TGG + tig0031500:1231-1250 None:intergenic 45.0%
GGCTACCAAATCTCCAAAGA+AGG - tig0031500:1232-1251 Msa1446810:intron 45.0%
GCAAGCACCAAGACGAAGAA+AGG - tig0031500:727-746 Msa1446810:three_prime_UTR 50.0%
ACCAAGACGAAGAAAGGAGC+TGG - tig0031500:733-752 Msa1446810:three_prime_UTR 50.0%
ACCAGCTCCTTTCTTCGTCT+TGG + tig0031500:737-756 None:intergenic 50.0%
AAGACGAAGAAAGGAGCTGG+TGG - tig0031500:736-755 Msa1446810:three_prime_UTR 50.0%
AAAGGAGCTGGTGGAAGGAA+AGG - tig0031500:745-764 Msa1446810:three_prime_UTR 50.0%
GAAAGGTGGTCCAAGGAAGA+AGG - tig0031500:762-781 Msa1446810:three_prime_UTR 50.0%
! TACCGACCGATTCTTCCAAC+TGG + tig0031500:823-842 None:intergenic 50.0%
!! CATCCCTAGGCATTTGCTGT+TGG - tig0031500:1070-1089 Msa1446810:CDS 50.0%
CTGCCAACAGCAAATGCCTA+GGG + tig0031500:1076-1095 None:intergenic 50.0%
ACTGCCAACAGCAAATGCCT+AGG + tig0031500:1077-1096 None:intergenic 50.0%
! GGTAGCCTTGGATGGAGATT+TGG + tig0031500:1219-1238 None:intergenic 50.0%
! GGAGATTTGGTAGCCTTGGA+TGG + tig0031500:1227-1246 None:intergenic 50.0%
GCAAGCACCAAGACGAAGAA+AGG - tig0031500:727-746 Msa1446810:three_prime_UTR 50.0%
ACCAAGACGAAGAAAGGAGC+TGG - tig0031500:733-752 Msa1446810:three_prime_UTR 50.0%
ACCAGCTCCTTTCTTCGTCT+TGG + tig0031500:737-756 None:intergenic 50.0%
AAGACGAAGAAAGGAGCTGG+TGG - tig0031500:736-755 Msa1446810:three_prime_UTR 50.0%
AAAGGAGCTGGTGGAAGGAA+AGG - tig0031500:745-764 Msa1446810:three_prime_UTR 50.0%
GAAAGGTGGTCCAAGGAAGA+AGG - tig0031500:762-781 Msa1446810:three_prime_UTR 50.0%
! TACCGACCGATTCTTCCAAC+TGG + tig0031500:823-842 None:intergenic 50.0%
!! CATCCCTAGGCATTTGCTGT+TGG - tig0031500:1070-1089 Msa1446810:CDS 50.0%
CTGCCAACAGCAAATGCCTA+GGG + tig0031500:1076-1095 None:intergenic 50.0%
ACTGCCAACAGCAAATGCCT+AGG + tig0031500:1077-1096 None:intergenic 50.0%
! GGTAGCCTTGGATGGAGATT+TGG + tig0031500:1219-1238 None:intergenic 50.0%
! GGAGATTTGGTAGCCTTGGA+TGG + tig0031500:1227-1246 None:intergenic 50.0%
CGAAGAAAGGAGCTGGTGGA+AGG - tig0031500:740-759 Msa1446810:three_prime_UTR 55.0%
GTGGAAGGAAAGGTGGTCCA+AGG - tig0031500:755-774 Msa1446810:three_prime_UTR 55.0%
AGGTGGTCCAAGGAAGAAGG+CGG - tig0031500:765-784 Msa1446810:three_prime_UTR 55.0%
CTTGTCACCGCCTTCTTCCT+TGG + tig0031500:775-794 None:intergenic 55.0%
GTGACAAGATCCACCAGAGC+TGG - tig0031500:787-806 Msa1446810:three_prime_UTR 55.0%
GGAAGATACGCTCAGCGTGT+TGG - tig0031500:853-872 Msa1446810:three_prime_UTR 55.0%
! TACGCTCAGCGTGTTGGTAC+TGG - tig0031500:859-878 Msa1446810:three_prime_UTR 55.0%
!! GGCATTTGCTGTTGGCAGTG+AGG - tig0031500:1078-1097 Msa1446810:CDS 55.0%
CGAAGAAAGGAGCTGGTGGA+AGG - tig0031500:740-759 Msa1446810:three_prime_UTR 55.0%
GTGGAAGGAAAGGTGGTCCA+AGG - tig0031500:755-774 Msa1446810:three_prime_UTR 55.0%
AGGTGGTCCAAGGAAGAAGG+CGG - tig0031500:765-784 Msa1446810:three_prime_UTR 55.0%
CTTGTCACCGCCTTCTTCCT+TGG + tig0031500:775-794 None:intergenic 55.0%
GTGACAAGATCCACCAGAGC+TGG - tig0031500:787-806 Msa1446810:three_prime_UTR 55.0%
GGAAGATACGCTCAGCGTGT+TGG - tig0031500:853-872 Msa1446810:three_prime_UTR 55.0%
! TACGCTCAGCGTGTTGGTAC+TGG - tig0031500:859-878 Msa1446810:three_prime_UTR 55.0%
!! GGCATTTGCTGTTGGCAGTG+AGG - tig0031500:1078-1097 Msa1446810:CDS 55.0%
GGAGCTGGTGGAAGGAAAGG+TGG - tig0031500:748-767 Msa1446810:three_prime_UTR 60.0%
GGAGCTGGTGGAAGGAAAGG+TGG - tig0031500:748-767 Msa1446810:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
tig0031500 gene 631 1594 631 ID=Msa1446810;Name=Msa1446810
tig0031500 mRNA 631 1594 631 ID=Msa1446810-mRNA-1;Parent=Msa1446810;Name=Msa1446810-mRNA-1;_AED=0.05;_eAED=0.05;_QI=90|1|1|1|1|1|2|335|148
tig0031500 exon 631 1205 631 ID=Msa1446810-mRNA-1:exon:15604;Parent=Msa1446810-mRNA-1
tig0031500 exon 1298 1594 1298 ID=Msa1446810-mRNA-1:exon:15603;Parent=Msa1446810-mRNA-1
tig0031500 five_prime_UTR 1505 1594 1505 ID=Msa1446810-mRNA-1:five_prime_utr;Parent=Msa1446810-mRNA-1
tig0031500 CDS 1298 1504 1298 ID=Msa1446810-mRNA-1:cds;Parent=Msa1446810-mRNA-1
tig0031500 CDS 966 1205 966 ID=Msa1446810-mRNA-1:cds;Parent=Msa1446810-mRNA-1
tig0031500 three_prime_UTR 631 965 631 ID=Msa1446810-mRNA-1:three_prime_utr;Parent=Msa1446810-mRNA-1
Gene Sequence

>Msa1446810

ATGGACGCAAGCACCAAGACGAAGAAAGGAGCTGGTGGAAGGAAAGGTGGTCCAAGGAAGAAGGCGGTGACAAGATCCACCAGAGCTGGTCTTCAATTTCCAGTTGGAAGAATCGGTCGGTACTTGAAGAAAGGAAGATACGCTCAGCGTGTTGGTACTGGTGCTCCTGTTTATCTTGCAGCTGTTCTTGAATATCTTGCTGCTGAGGTTCTTGAATTGGCTGGAAATGCTGCACGTGACAACAAGAAGAACAGGATCATCCCTAGGCATTTGCTGTTGGCAGTGAGGAATGATGAAGAACTTGGAAAGTTGCTAGCTGGAGTTACAATTGCACATGGTGGTGTTCTTCCAAACATCAACCCAATTCTTTTACCTAAGAAGAATGAGAAGGCTTCAACTGCTACCAAATCTCCATCCAAGGCTACCAAATCTCCAAAGAAGGCTTAG

Protein sequence

>Msa1446810

MDASTKTKKGAGGRKGGPRKKAVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKNEKASTATKSPSKATKSPKKA*