AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1205280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205280 MtrunA17_Chr4g0054351 97.269 659 12 3 1 654 1 658 0.0 1333
Msa1205280 MtrunA17_Chr3g0135161 53.052 688 257 23 1 653 1 657 0.0 563
Msa1205280 MtrunA17_Chr1g0152161 51.458 686 275 20 1 654 1 660 0.0 541
Msa1205280 MtrunA17_Chr5g0400871 48.246 684 184 29 1 654 1 544 1.06e-167 490
Msa1205280 MtrunA17_Chr8g0343851 47.251 491 181 10 18 492 3 431 1.58e-128 391
Msa1205280 MtrunA17_Chr4g0032631 57.862 318 105 7 248 558 121 416 1.29e-111 346
Msa1205280 MtrunA17_Chr4g0072291 72.018 218 58 1 293 507 143 360 6.94e-111 343
Msa1205280 MtrunA17_Chr2g0328971 67.073 246 74 3 300 539 158 402 2.56e-108 337
Msa1205280 MtrunA17_Chr7g0249621 74.884 215 42 2 298 500 248 462 1.09e-107 340
Msa1205280 MtrunA17_Chr5g0412151 80.108 186 34 1 300 482 215 400 5.88e-95 302
Msa1205280 MtrunA17_Chr4g0073521 71.084 166 48 0 308 473 46 211 3.54e-82 263
Msa1205280 MtrunA17_Chr7g0216601 62.366 186 66 2 291 473 48 232 5.38e-75 246
Msa1205280 MtrunA17_Chr8g0355191 63.636 176 63 1 308 483 54 228 9.26e-74 243
Msa1205280 MtrunA17_Chr6g0452911 61.340 194 65 1 290 473 42 235 1.65e-73 241
Msa1205280 MtrunA17_Chr4g0002011 68.639 169 50 1 308 473 35 203 4.67e-71 233
Msa1205280 MtrunA17_Chr8g0355181 50.612 245 114 3 308 552 55 292 5.38e-70 232
Msa1205280 MtrunA17_Chr8g0362541 49.612 258 114 3 262 505 23 278 2.19e-69 231
Msa1205280 MtrunA17_Chr8g0367311 70.548 146 43 0 346 491 22 167 4.62e-69 225
Msa1205280 MtrunA17_Chr2g0305821 58.333 144 48 2 278 419 24 157 2.37e-44 155
Msa1205280 MtrunA17_Chr4g0053181 53.333 165 69 3 312 476 176 332 3.96e-41 157
Msa1205280 MtrunA17_Chr7g0257361 63.077 130 40 2 307 433 55 179 5.97e-41 154
Msa1205280 MtrunA17_Chr5g0401891 53.333 165 69 3 312 476 152 308 1.82e-40 155
Msa1205280 MtrunA17_Chr4g0030191 49.419 172 79 3 312 483 131 294 1.10e-38 149
Msa1205280 MtrunA17_Chr7g0263581 50.303 165 74 3 312 476 139 295 1.25e-38 149
Msa1205280 MtrunA17_Chr2g0325911 46.667 165 65 4 312 476 134 275 4.57e-30 124
Msa1205280 MtrunA17_Chr2g0305831 73.684 57 15 0 417 473 3 59 2.44e-23 98.6
Msa1205280 MtrunA17_Chr3g0126151 47.368 95 49 1 357 451 47 140 4.43e-22 92.8
Msa1205280 MtrunA17_Chr8g0367321 48.214 112 43 4 240 347 93 193 3.03e-21 92.4
Msa1205280 MtrunA17_Chr1g0170761 39.007 141 78 3 288 428 113 245 7.06e-16 80.1
Msa1205280 MtrunA17_Chr4g0044901 36.449 107 63 3 412 515 96 200 1.10e-11 65.1
Msa1205280 MtrunA17_Chr1g0158971 49.315 73 36 1 396 468 99 170 1.64e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205280 AT4G37750.1 52.158 556 170 19 1 522 1 494 3.38e-157 464
Msa1205280 AT1G72570.1 71.721 244 63 3 252 491 164 405 5.23e-119 361
Msa1205280 AT5G57390.2 82.979 188 28 2 300 484 73 259 2.98e-110 339
Msa1205280 AT1G51190.1 66.535 254 77 4 248 496 128 378 3.11e-110 344
Msa1205280 AT3G20840.1 65.399 263 59 5 248 496 125 369 2.12e-109 342
Msa1205280 AT5G57390.1 82.979 188 28 2 300 484 191 377 3.63e-109 341
Msa1205280 AT5G17430.2 63.235 272 92 3 300 568 136 402 6.12e-107 333
Msa1205280 AT5G17430.1 63.235 272 92 3 300 568 198 464 2.32e-106 334
Msa1205280 AT5G10510.2 73.737 198 52 0 285 482 203 400 5.28e-92 295
Msa1205280 AT5G65510.4 69.014 213 63 1 285 494 146 358 7.33e-91 289
Msa1205280 AT5G65510.2 69.014 213 63 1 285 494 204 416 7.40e-91 291
Msa1205280 AT5G65510.1 69.014 213 63 1 285 494 204 416 7.40e-91 291
Msa1205280 AT5G10510.7 72.637 201 52 1 285 482 203 403 4.55e-90 290
Msa1205280 AT5G10510.5 72.637 201 52 1 285 482 203 403 4.55e-90 290
Msa1205280 AT5G10510.1 72.637 201 52 1 285 482 226 426 8.97e-90 290
Msa1205280 AT5G10510.6 72.637 201 52 1 285 482 241 441 1.05e-89 291
Msa1205280 AT5G10510.4 72.637 201 52 1 285 482 241 441 1.05e-89 291
Msa1205280 AT5G10510.3 65.611 221 53 1 285 482 241 461 2.02e-85 280
Msa1205280 AT5G65510.3 71.429 161 43 1 285 442 146 306 7.43e-79 253
Msa1205280 AT3G54320.3 68.047 169 51 1 308 473 61 229 1.72e-68 230
Msa1205280 AT3G54320.1 68.047 169 51 1 308 473 61 229 2.15e-68 230
Msa1205280 AT1G79700.2 67.456 169 52 1 308 473 48 216 1.58e-62 210
Msa1205280 AT1G16060.1 66.474 173 55 1 304 473 50 222 5.36e-61 207
Msa1205280 AT1G79700.1 63.314 169 49 2 308 473 48 206 9.66e-55 189
Msa1205280 AT3G54320.4 70.312 128 38 0 346 473 36 163 6.60e-51 181
Msa1205280 AT3G54320.5 70.312 128 38 0 346 473 36 163 6.60e-51 181
Msa1205280 AT1G79700.4 67.969 128 41 0 346 473 7 134 3.65e-43 155
Msa1205280 AT1G79700.3 67.969 128 41 0 346 473 13 140 3.84e-43 155
Msa1205280 AT1G16060.3 66.418 134 45 0 340 473 19 152 5.54e-42 154
Msa1205280 AT4G36920.1 42.449 245 112 5 236 476 68 287 2.89e-41 156
Msa1205280 AT4G36920.2 42.449 245 112 5 236 476 68 287 2.89e-41 156
Msa1205280 AT5G67180.3 48.851 174 81 3 312 485 96 261 1.17e-40 150
Msa1205280 AT2G41710.1 55.921 152 56 3 285 433 46 189 1.44e-40 154
Msa1205280 AT5G67180.2 49.143 175 81 3 312 486 96 262 1.68e-40 150
Msa1205280 AT2G41710.4 55.921 152 56 3 285 433 46 189 2.95e-40 154
Msa1205280 AT5G67180.1 49.143 175 81 3 312 486 96 262 3.94e-40 150
Msa1205280 AT2G41710.2 54.140 157 56 4 285 433 46 194 3.17e-38 147
Msa1205280 AT2G28550.3 43.111 225 97 8 312 526 153 356 1.81e-37 145
Msa1205280 AT2G41710.3 59.504 121 41 2 316 433 109 224 4.79e-34 135
Msa1205280 AT3G54320.2 72.727 88 24 0 386 473 1 88 7.95e-32 125
Msa1205280 AT1G16060.2 70.455 88 26 0 386 473 1 88 5.72e-31 120
Msa1205280 AT1G16060.4 70.455 88 26 0 386 473 1 88 5.72e-31 120
Msa1205280 AT1G16060.6 70.455 88 26 0 386 473 1 88 5.72e-31 120
Msa1205280 AT1G16060.5 70.455 88 26 0 386 473 1 88 5.72e-31 120
Msa1205280 AT2G28550.4 49.275 138 62 3 312 449 153 282 6.09e-31 124
Msa1205280 AT5G67180.4 48.252 143 66 3 312 454 96 230 3.29e-30 120
Msa1205280 AT2G28550.1 40.000 225 89 9 312 526 153 341 1.57e-29 122
Msa1205280 AT2G28550.2 49.194 124 55 3 312 435 153 268 2.44e-26 109
Msa1205280 AT2G28550.6 49.194 124 55 3 312 435 153 268 2.44e-26 109
Msa1205280 AT2G39250.2 42.202 109 56 2 313 421 109 210 4.61e-23 99.0
Msa1205280 AT2G39250.1 38.760 129 72 2 293 421 89 210 1.30e-22 99.8
Msa1205280 AT2G28550.5 38.743 191 78 7 346 526 14 175 2.26e-21 95.1
Msa1205280 AT5G60120.4 45.238 126 61 3 309 434 157 274 1.31e-19 92.0
Msa1205280 AT5G60120.3 45.238 126 61 3 309 434 157 274 1.31e-19 92.0
Msa1205280 AT5G60120.5 45.238 126 61 3 309 434 157 274 1.31e-19 92.0
Msa1205280 AT5G60120.6 39.873 158 72 5 309 466 157 291 2.01e-19 92.4
Msa1205280 AT5G60120.1 39.873 158 72 5 309 466 157 291 2.35e-19 92.0
Msa1205280 AT5G60120.2 39.873 158 72 5 309 466 157 291 2.88e-19 92.0
Msa1205280 AT3G54990.2 46.154 104 49 2 312 415 122 218 3.92e-18 84.7
Msa1205280 AT3G54990.1 46.154 104 49 2 312 415 122 218 2.03e-17 84.7
Msa1205280 AT1G16060.7 77.193 57 13 0 417 473 10 66 4.38e-16 77.4
Msa1205280 AT1G03800.1 53.226 62 28 1 412 473 53 113 8.08e-12 66.2
Msa1205280 AT5G65130.1 34.752 141 68 5 380 497 72 211 8.76e-11 63.5
Msa1205280 AT5G65130.2 34.752 141 68 5 380 497 74 213 9.72e-11 63.5

Find 131 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAGGATTGTAAAATGTTT+AGG 0.201759 8_1:-61456339 None:intergenic
TGTGCCTTGGTTAGTATATA+AGG 0.203049 8_1:-61452661 None:intergenic
CAAATAGTAATTTGAATTCT+TGG 0.209522 8_1:+61455968 Msa1205280:CDS
CAAGAATTCAAATTACTATT+TGG 0.219550 8_1:-61455967 None:intergenic
AGTAACTATTGTTACTCTTA+TGG 0.248617 8_1:+61453022 Msa1205280:CDS
ATCTATCTATAAACTCTCTT+TGG 0.262548 8_1:-61452690 None:intergenic
AATCTACAATACCATGTCTT+AGG 0.265445 8_1:-61456356 None:intergenic
AGGAAATCTATTGATACTTT+TGG 0.282332 8_1:+61453820 Msa1205280:CDS
TTCAACAGCTTCAAAACTAT+TGG 0.285703 8_1:+61455933 Msa1205280:CDS
AATATTGGTTCAATGGCTTA+TGG 0.295832 8_1:+61453640 Msa1205280:CDS
AATGCTAGGTCTTCATTCTA+TGG 0.296635 8_1:-61452568 None:intergenic
CATTTCAATGCAGAAGAATA+TGG 0.299462 8_1:+61455666 Msa1205280:CDS
TTAGGATTGTAAAATGTTTA+GGG 0.299697 8_1:-61456338 None:intergenic
GGAGATATGAAGCTCATCTA+TGG 0.306792 8_1:+61454003 Msa1205280:CDS
CTAAAATGTAGTTACTAAAA+AGG 0.307240 8_1:-61456298 None:intergenic
CTTCACCCATGTTTGATTGA+TGG 0.312766 8_1:-61453498 None:intergenic
GGGACCCTTCACAACATCTT+AGG 0.319809 8_1:+61455989 Msa1205280:CDS
ATAAGCCATTGAACCAATAT+TGG 0.320548 8_1:-61453638 None:intergenic
AACCATGAGTTGATGTTAGA+AGG 0.326730 8_1:+61453442 Msa1205280:CDS
GTTCTTTCATTCTCAAATCT+TGG 0.331942 8_1:-61455733 None:intergenic
CTGTTGAAGTTGTTGATGTT+GGG 0.335268 8_1:-61455704 None:intergenic
TCTCCTCAAATGAATAATAT+TGG 0.338994 8_1:+61452896 Msa1205280:CDS
ACATTAACAATGAAAATAAC+TGG 0.340271 8_1:+61452858 Msa1205280:CDS
AAATAGTAATTTGAATTCTT+GGG 0.341154 8_1:+61455969 Msa1205280:CDS
GACTTAGTGGTTTAAAGAAC+TGG 0.346259 8_1:+61453527 Msa1205280:CDS
ATCAGATTTGAGAGGCATAA+TGG 0.354338 8_1:-61453083 None:intergenic
GATAGATTTCATTACATTGT+TGG 0.357911 8_1:+61452706 Msa1205280:five_prime_UTR
TCAAGCAGCACTCAAGTATT+GGG 0.359648 8_1:+61454539 Msa1205280:CDS
CATATTCTTCTGCATTGAAA+TGG 0.369322 8_1:-61455665 None:intergenic
CTTGCCATCTTCCATGTTGA+TGG 0.372286 8_1:-61455011 None:intergenic
GGTAATAAAGATCTATATCT+TGG 0.375013 8_1:+61455054 Msa1205280:CDS
AAAGAAGGCCAAAGCAGAAA+AGG 0.375414 8_1:+61454041 Msa1205280:CDS
TGTATCAAATGCTTCTTCAT+TGG 0.379502 8_1:+61455837 Msa1205280:CDS
TGATGGATCTCTTTATGAAA+TGG 0.383299 8_1:+61453102 Msa1205280:CDS
GAAGACCTAGCATTGCTTGC+TGG 0.391924 8_1:+61452577 Msa1205280:five_prime_UTR
TCTGTTGAAGTTGTTGATGT+TGG 0.394185 8_1:-61455705 None:intergenic
GTTGGTTAGATACTTAGATA+TGG 0.394209 8_1:+61452724 Msa1205280:five_prime_UTR
AGCAGAAGCAAATTGTTCAT+AGG 0.397213 8_1:+61453800 Msa1205280:CDS
TTAACATTGAACAAGCTAGA+AGG 0.405995 8_1:+61455554 Msa1205280:CDS
AACAATGAAAATAACTGGTT+AGG 0.421756 8_1:+61452863 Msa1205280:CDS
TGGATCCAATATTGGTTCAA+TGG 0.423285 8_1:+61453633 Msa1205280:CDS
GGTGAAGATCATGGACTTAG+TGG 0.425302 8_1:+61453514 Msa1205280:CDS
AAGGGTATATGTATATCTAA+AGG 0.426431 8_1:-61452642 None:intergenic
TAGCTTGTTCAATGTTAAGA+AGG 0.429934 8_1:-61455549 None:intergenic
AGGGTATATGTATATCTAAA+GGG 0.435527 8_1:-61452641 None:intergenic
TCAGATTTGAGAGGCATAAT+GGG 0.436788 8_1:-61453082 None:intergenic
TTTATTAGGCATAGGTGGAC+TGG 0.438736 8_1:+61453981 Msa1205280:intron
ATCAAGCAGCACTCAAGTAT+TGG 0.444500 8_1:+61454538 Msa1205280:CDS
GTGCCTTGGTTAGTATATAA+GGG 0.446634 8_1:-61452660 None:intergenic
ACACCAATATTATTCATTTG+AGG 0.447211 8_1:-61452899 None:intergenic
TATAATATGACAACTGTTGT+TGG 0.447627 8_1:-61453405 None:intergenic
GGTGAATGTGGATCCAATAT+TGG 0.454709 8_1:+61453625 Msa1205280:CDS
GAGGGACAATATGTAAGAAA+TGG 0.454968 8_1:+61456144 Msa1205280:three_prime_UTR
GATGGGAGATAGTAAAATTG+AGG 0.459317 8_1:+61456168 Msa1205280:three_prime_UTR
GGAAGATGGCAAGCTCGAAT+TGG 0.460222 8_1:+61455021 Msa1205280:CDS
CCTTGTTACTCCTCTGTACA+TGG 0.462036 8_1:-61454871 None:intergenic
ACAAGCTTGCAAAATCTCTC+TGG 0.463000 8_1:+61455901 Msa1205280:CDS
TGTTGAAAATTCTGTTGCTA+TGG 0.468546 8_1:+61453747 Msa1205280:CDS
ATGCTAGGTCTTCATTCTAT+GGG 0.475763 8_1:-61452567 None:intergenic
TGTGATAGAGAACAAAAGAA+AGG 0.478820 8_1:-61456068 None:intergenic
TCAAACATGGGTGAAGATCA+TGG 0.480026 8_1:+61453505 Msa1205280:CDS
CAAAGAACATCTCAATATAG+AGG 0.486736 8_1:+61453844 Msa1205280:CDS
ATGAAATGGAAGCTCTTAGC+AGG 0.491080 8_1:+61453116 Msa1205280:CDS
AATATGTTGCTCATTTAAGA+AGG 0.492255 8_1:+61454743 Msa1205280:CDS
GAGAGAAAATATGAAGAGAA+TGG 0.493769 8_1:+61452814 Msa1205280:exon
CAAAGCAGAAAAGGAAGACA+AGG 0.499730 8_1:+61454050 Msa1205280:CDS
CTGGCATCTGAGGCAAAGAA+AGG 0.499839 8_1:-61456017 None:intergenic
GCTCGAATTGGTAGAGTAGC+TGG 0.499873 8_1:+61455033 Msa1205280:CDS
TTGTTGTCATATGCAGAAGA+AGG 0.500286 8_1:-61455628 None:intergenic
GAGTAACAATAGTTACTAAG+AGG 0.502157 8_1:-61453016 None:intergenic
TTGTGTCAAAGCATGTTTCG+AGG 0.505861 8_1:+61456257 Msa1205280:three_prime_UTR
TGATCATGTCCATGACTAGC+TGG 0.509563 8_1:-61453565 None:intergenic
ATGGGAGATAGTAAAATTGA+GGG 0.510372 8_1:+61456169 Msa1205280:three_prime_UTR
GGACTTGAACATGAAAATGC+TGG 0.514334 8_1:+61453043 Msa1205280:CDS
GTGATAGAGAACAAAAGAAA+GGG 0.521763 8_1:-61456067 None:intergenic
AATGAAGAATATGACAAGAC+AGG 0.524291 8_1:+61454720 Msa1205280:CDS
TTATTAGGCATAGGTGGACT+GGG 0.524849 8_1:+61453982 Msa1205280:intron
GCAGAAGCAGAAGCAGAAGA+AGG 0.529348 8_1:-61452950 None:intergenic
GTACTACTACATGCATAATG+AGG 0.531601 8_1:-61453313 None:intergenic
ATTATGCCTCTCAAATCTGA+TGG 0.532902 8_1:+61453085 Msa1205280:CDS
AAGCAAAGTCAAACTTCAAG+TGG 0.535525 8_1:+61453469 Msa1205280:CDS
GACACCATCAACATGGAAGA+TGG 0.537820 8_1:+61455007 Msa1205280:intron
ACCCTTCTAACATCAACTCA+TGG 0.539230 8_1:-61453444 None:intergenic
ACCATGAGTTGATGTTAGAA+GGG 0.549490 8_1:+61453443 Msa1205280:CDS
TACTACTACATGCATAATGA+GGG 0.551148 8_1:-61453312 None:intergenic
GCTATGGATACAAAGAAAAG+AGG 0.553448 8_1:+61453763 Msa1205280:CDS
AATTGTTTATTAGGCATAGG+TGG 0.555057 8_1:+61453976 Msa1205280:intron
TGGCATCTGAGGCAAAGAAA+GGG 0.555089 8_1:-61456016 None:intergenic
GATGATTGTTCCTGTTGTAG+AGG 0.558499 8_1:+61453594 Msa1205280:CDS
TTGAAGTTGTTGATGTTGGG+AGG 0.565145 8_1:-61455701 None:intergenic
ACTTAGTGGTTTAAAGAACT+GGG 0.566240 8_1:+61453528 Msa1205280:CDS
GACAACAGTTGCAAGAAAGA+AGG 0.566962 8_1:+61454026 Msa1205280:CDS
CAATATGTAAGAAATGGTGA+TGG 0.568192 8_1:+61456150 Msa1205280:three_prime_UTR
GTATTCCAGCAAGCAATGCT+AGG 0.570286 8_1:-61452582 None:intergenic
AAATTTCCATCAATCAAACA+TGG 0.572921 8_1:+61453492 Msa1205280:CDS
GGGAAGTTTATGTGAGTGGA+TGG 0.574919 8_1:-61454564 None:intergenic
AACAGGGAAGTTTATGTGAG+TGG 0.577161 8_1:-61454568 None:intergenic
ACACAGCTAGACTGAGAGCT+AGG 0.578119 8_1:-61453694 None:intergenic
GAGATATGAAGCTCATCTAT+GGG 0.580404 8_1:+61454004 Msa1205280:CDS
AATATGTAAGAAATGGTGAT+GGG 0.581590 8_1:+61456151 Msa1205280:three_prime_UTR
AGTTTGAGCAGTTCAAGAGA+AGG 0.582795 8_1:+61455865 Msa1205280:CDS
GAAGGCCTAAGATGTTGTGA+AGG 0.585697 8_1:-61455994 None:intergenic
GAGGAAAATGAAGGTGAATG+TGG 0.588553 8_1:+61453613 Msa1205280:CDS
AAAAGCAGTGGATTCTCAAG+AGG 0.594604 8_1:+61454843 Msa1205280:CDS
AAAGCAGTGGATTCTCAAGA+GGG 0.594710 8_1:+61454844 Msa1205280:CDS
CTCAATATAGAGGTGTAACA+AGG 0.612520 8_1:+61453854 Msa1205280:CDS
AACATGCTGTCTAAGCTCAA+AGG 0.623476 8_1:-61453352 None:intergenic
GTGAAGGTCTTTCTCATACA+CGG 0.626154 8_1:+61452541 Msa1205280:five_prime_UTR
AAATTATCAAAATCAACTTG+AGG 0.631469 8_1:+61454696 Msa1205280:CDS
GGTAGCAGACACCATCAACA+TGG 0.639807 8_1:+61455000 Msa1205280:intron
CCATGTACAGAGGAGTAACA+AGG 0.640756 8_1:+61454871 Msa1205280:CDS
GTAGAATAAAGCAAAAGTGA+AGG 0.641419 8_1:+61452525 None:intergenic
ATTGCAGCTATAAAATTCAG+AGG 0.642745 8_1:+61455460 Msa1205280:CDS
AATTTCCATCAATCAAACAT+GGG 0.644018 8_1:+61453493 Msa1205280:CDS
ATCTGAGGCAAAGAAAGGGA+AGG 0.647053 8_1:-61456012 None:intergenic
AGTTACTAAGAGGAGAAGAG+TGG 0.647916 8_1:-61453006 None:intergenic
ATACCCTTATATACTAACCA+AGG 0.651399 8_1:+61452657 Msa1205280:five_prime_UTR
AAGGCCTAAGATGTTGTGAA+GGG 0.651408 8_1:-61455993 None:intergenic
GTTTCATCAAGAAGTAGCTG+AGG 0.653674 8_1:+61455792 Msa1205280:CDS
CCTGTTGTAGAGGAAAATGA+AGG 0.654487 8_1:+61453604 Msa1205280:CDS
CAAGCAGCACTCAAGTATTG+GGG 0.655625 8_1:+61454540 Msa1205280:CDS
AGAGATCCATCAGATTTGAG+AGG 0.660630 8_1:-61453091 None:intergenic
CTTAGCAGGTCACAAACACA+AGG 0.664909 8_1:+61453130 Msa1205280:CDS
TGCTAGGTCTTCATTCTATG+GGG 0.667132 8_1:-61452566 None:intergenic
AGCTAGAAGGAACAAAGAGG+TGG 0.670383 8_1:+61455567 Msa1205280:CDS
AAGCAGTGGATTCTCAAGAG+GGG 0.699895 8_1:+61454845 Msa1205280:CDS
AGAGGGGCTTCCATGTACAG+AGG 0.703240 8_1:+61454861 Msa1205280:CDS
AGCAGATGACATATTCTGTG+AGG 0.705618 8_1:-61453722 None:intergenic
ACTACTACATGCATAATGAG+GGG 0.710323 8_1:-61453311 None:intergenic
ACAAGCTAGAAGGAACAAAG+AGG 0.715606 8_1:+61455564 Msa1205280:CDS
CATGTTATCCAAAGACACTG+AGG 0.754091 8_1:-61455770 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTAATTATATTTTAA+TGG - chr8_1:61454929-61454948 None:intergenic 0.0%
!!! ATATTTTATTATATCAAAGT+TGG - chr8_1:61455500-61455519 None:intergenic 10.0%
!!! ATTCTTTTTGTTTAGTTTAA+AGG + chr8_1:61452605-61452624 Msa1205280:five_prime_UTR 15.0%
!!! TATGTTTTGAATTGTTTATT+AGG + chr8_1:61453967-61453986 Msa1205280:intron 15.0%
!!! TTTTGACAAAAACTATATTT+TGG - chr8_1:61454129-61454148 None:intergenic 15.0%
!! AACAAAATAAAAAATGAGAA+TGG - chr8_1:61454281-61454300 None:intergenic 15.0%
!!! ATTCCAAAATTTTGATTTTA+GGG + chr8_1:61454478-61454497 Msa1205280:intron 15.0%
!! CAATTAATAAACCTTATAAA+TGG - chr8_1:61454639-61454658 None:intergenic 15.0%
!! AGTACATTACAATATTAAAT+TGG - chr8_1:61455137-61455156 None:intergenic 15.0%
!! AAATAGTAATTTGAATTCTT+GGG + chr8_1:61455969-61455988 Msa1205280:CDS 15.0%
!! ACATTAACAATGAAAATAAC+TGG + chr8_1:61452858-61452877 Msa1205280:CDS 20.0%
!! ATTATGTGTGTATTAATGTA+TGG + chr8_1:61453175-61453194 Msa1205280:intron 20.0%
!! CACAAAAATAGATAAAAAGT+GGG - chr8_1:61453228-61453247 None:intergenic 20.0%
!! TCACAAAAATAGATAAAAAG+TGG - chr8_1:61453229-61453248 None:intergenic 20.0%
!!! TTTTTTAGGTAATGAAACTA+TGG + chr8_1:61453285-61453304 Msa1205280:CDS 20.0%
!!! TTTTTAGGTAATGAAACTAT+GGG + chr8_1:61453286-61453305 Msa1205280:CDS 20.0%
!!! CATTCCAAAATTTTGATTTT+AGG + chr8_1:61454477-61454496 Msa1205280:intron 20.0%
!!! TTCCAAAATTTTGATTTTAG+GGG + chr8_1:61454479-61454498 Msa1205280:intron 20.0%
!!! AATGATTGTTATTACTAACA+GGG - chr8_1:61454587-61454606 None:intergenic 20.0%
!!! TAATGATTGTTATTACTAAC+AGG - chr8_1:61454588-61454607 None:intergenic 20.0%
!! TTGTTTCAATTCCATTTATA+AGG + chr8_1:61454625-61454644 Msa1205280:intron 20.0%
!! AAATTATCAAAATCAACTTG+AGG + chr8_1:61454696-61454715 Msa1205280:CDS 20.0%
!!! CTTGGATTATATTTTTACTT+GGG - chr8_1:61455355-61455374 None:intergenic 20.0%
!! ATATGATGTTGAAAAAATCA+TGG + chr8_1:61455516-61455535 Msa1205280:CDS 20.0%
!! CAAGAATTCAAATTACTATT+TGG - chr8_1:61455970-61455989 None:intergenic 20.0%
!! CAAATAGTAATTTGAATTCT+TGG + chr8_1:61455968-61455987 Msa1205280:CDS 20.0%
!! CTAAAATGTAGTTACTAAAA+AGG - chr8_1:61456301-61456320 None:intergenic 20.0%
!! TTAGGATTGTAAAATGTTTA+GGG - chr8_1:61456341-61456360 None:intergenic 20.0%
! AGGGTATATGTATATCTAAA+GGG - chr8_1:61452644-61452663 None:intergenic 25.0%
!! AAGGGTATATGTATATCTAA+AGG - chr8_1:61452645-61452664 None:intergenic 25.0%
! ATCTATCTATAAACTCTCTT+TGG - chr8_1:61452693-61452712 None:intergenic 25.0%
! GATAGATTTCATTACATTGT+TGG + chr8_1:61452706-61452725 Msa1205280:five_prime_UTR 25.0%
! AACAATGAAAATAACTGGTT+AGG + chr8_1:61452863-61452882 Msa1205280:CDS 25.0%
! TCTCCTCAAATGAATAATAT+TGG + chr8_1:61452896-61452915 Msa1205280:CDS 25.0%
! ACACCAATATTATTCATTTG+AGG - chr8_1:61452902-61452921 None:intergenic 25.0%
! AGTAACTATTGTTACTCTTA+TGG + chr8_1:61453022-61453041 Msa1205280:CDS 25.0%
!!! CCTAAAAAATTCTCTAGTTT+TGG - chr8_1:61453274-61453293 None:intergenic 25.0%
!!! CCAAAACTAGAGAATTTTTT+AGG + chr8_1:61453271-61453290 Msa1205280:CDS 25.0%
!!! TTTTAGGTAATGAAACTATG+GGG + chr8_1:61453287-61453306 Msa1205280:CDS 25.0%
!!! TGTTTTGTTGGATATGATTT+TGG - chr8_1:61453378-61453397 None:intergenic 25.0%
! TATAATATGACAACTGTTGT+TGG - chr8_1:61453408-61453427 None:intergenic 25.0%
! AAATTTCCATCAATCAAACA+TGG + chr8_1:61453492-61453511 Msa1205280:CDS 25.0%
! AATTTCCATCAATCAAACAT+GGG + chr8_1:61453493-61453512 Msa1205280:CDS 25.0%
!! AGGAAATCTATTGATACTTT+TGG + chr8_1:61453820-61453839 Msa1205280:CDS 25.0%
! TTGAATTGTTTATTAGGCAT+AGG + chr8_1:61453973-61453992 Msa1205280:intron 25.0%
! AATGATACTATGTGAACATT+TGG + chr8_1:61454077-61454096 Msa1205280:intron 25.0%
!! TAAGATTTTCAAAGTCATAC+TGG + chr8_1:61454371-61454390 Msa1205280:intron 25.0%
!!! TTTGTTATTAGATTCTGTCT+TGG + chr8_1:61454403-61454422 Msa1205280:intron 25.0%
!!! TTGCTTATGTTTTTAACATG+AGG + chr8_1:61454433-61454452 Msa1205280:intron 25.0%
!!! TCCAAAATTTTGATTTTAGG+GGG + chr8_1:61454480-61454499 Msa1205280:intron 25.0%
! TTTCATTCTCTTATAACAGT+TGG + chr8_1:61454672-61454691 Msa1205280:intron 25.0%
! AATATGTTGCTCATTTAAGA+AGG + chr8_1:61454743-61454762 Msa1205280:CDS 25.0%
! GGTAATAAAGATCTATATCT+TGG + chr8_1:61455054-61455073 Msa1205280:CDS 25.0%
! TTAAATTGGTACATGATCAA+TGG - chr8_1:61455123-61455142 None:intergenic 25.0%
!!! CCTTGGATTATATTTTTACT+TGG - chr8_1:61455356-61455375 None:intergenic 25.0%
! CCAAGTAAAAATATAATCCA+AGG + chr8_1:61455353-61455372 Msa1205280:intron 25.0%
!! CTCATTGAAATGAAACTTTT+AGG + chr8_1:61455406-61455425 Msa1205280:intron 25.0%
!!! TCTTTCTTTTACTTTTTGCA+TGG + chr8_1:61456122-61456141 Msa1205280:three_prime_UTR 25.0%
! AATATGTAAGAAATGGTGAT+GGG + chr8_1:61456151-61456170 Msa1205280:three_prime_UTR 25.0%
! CTTAGGATTGTAAAATGTTT+AGG - chr8_1:61456342-61456361 None:intergenic 25.0%
ATACCCTTATATACTAACCA+AGG + chr8_1:61452657-61452676 Msa1205280:five_prime_UTR 30.0%
GTTGGTTAGATACTTAGATA+TGG + chr8_1:61452724-61452743 Msa1205280:five_prime_UTR 30.0%
GAGAGAAAATATGAAGAGAA+TGG + chr8_1:61452814-61452833 Msa1205280:exon 30.0%
GAGTAACAATAGTTACTAAG+AGG - chr8_1:61453019-61453038 None:intergenic 30.0%
! TGATGGATCTCTTTATGAAA+TGG + chr8_1:61453102-61453121 Msa1205280:CDS 30.0%
TACTACTACATGCATAATGA+GGG - chr8_1:61453315-61453334 None:intergenic 30.0%
ACTTAGTGGTTTAAAGAACT+GGG + chr8_1:61453528-61453547 Msa1205280:CDS 30.0%
! GTTTAAAGAACTGGGTTTTA+AGG + chr8_1:61453536-61453555 Msa1205280:CDS 30.0%
ATAAGCCATTGAACCAATAT+TGG - chr8_1:61453641-61453660 None:intergenic 30.0%
!! AATATTGGTTCAATGGCTTA+TGG + chr8_1:61453640-61453659 Msa1205280:CDS 30.0%
TGTTGAAAATTCTGTTGCTA+TGG + chr8_1:61453747-61453766 Msa1205280:CDS 30.0%
CAAAGAACATCTCAATATAG+AGG + chr8_1:61453844-61453863 Msa1205280:CDS 30.0%
AATTGTTTATTAGGCATAGG+TGG + chr8_1:61453976-61453995 Msa1205280:intron 30.0%
!!! TGTTTTTTGCTTTCTTTGCT+TGG + chr8_1:61454297-61454316 Msa1205280:intron 30.0%
! ACCCCCTAAAATCAAAATTT+TGG - chr8_1:61454484-61454503 None:intergenic 30.0%
TGGAATTGAAACAAAAGACA+TGG - chr8_1:61454619-61454638 None:intergenic 30.0%
AATGAAGAATATGACAAGAC+AGG + chr8_1:61454720-61454739 Msa1205280:CDS 30.0%
! GTTCCTAACATCTTTAACTT+TGG + chr8_1:61454810-61454829 Msa1205280:intron 30.0%
AGACCAAAGTTAAAGATGTT+AGG - chr8_1:61454816-61454835 None:intergenic 30.0%
CTTTCAAAATCTTGTTCACT+TGG + chr8_1:61454979-61454998 Msa1205280:intron 30.0%
!! AATTTTGATCCCACAAACAT+TGG - chr8_1:61455331-61455350 None:intergenic 30.0%
! TTTAACTTTCATGCTAACCT+TGG - chr8_1:61455373-61455392 None:intergenic 30.0%
! TTTTATAGCTGCAATGTCAT+AGG - chr8_1:61455455-61455474 None:intergenic 30.0%
ATTGCAGCTATAAAATTCAG+AGG + chr8_1:61455460-61455479 Msa1205280:CDS 30.0%
!! TAGCTTGTTCAATGTTAAGA+AGG - chr8_1:61455552-61455571 None:intergenic 30.0%
TTAACATTGAACAAGCTAGA+AGG + chr8_1:61455554-61455573 Msa1205280:CDS 30.0%
CATATTCTTCTGCATTGAAA+TGG - chr8_1:61455668-61455687 None:intergenic 30.0%
CATTTCAATGCAGAAGAATA+TGG + chr8_1:61455666-61455685 Msa1205280:CDS 30.0%
GTTCTTTCATTCTCAAATCT+TGG - chr8_1:61455736-61455755 None:intergenic 30.0%
TGTATCAAATGCTTCTTCAT+TGG + chr8_1:61455837-61455856 Msa1205280:CDS 30.0%
!!! AATAGTTTTGAAGCTGTTGA+AGG - chr8_1:61455934-61455953 None:intergenic 30.0%
TTCAACAGCTTCAAAACTAT+TGG + chr8_1:61455933-61455952 Msa1205280:CDS 30.0%
GTGATAGAGAACAAAAGAAA+GGG - chr8_1:61456070-61456089 None:intergenic 30.0%
TGTGATAGAGAACAAAAGAA+AGG - chr8_1:61456071-61456090 None:intergenic 30.0%
!!! TTCTTTTACTTTTTGCATGG+AGG + chr8_1:61456125-61456144 Msa1205280:three_prime_UTR 30.0%
!!! TCTTTTACTTTTTGCATGGA+GGG + chr8_1:61456126-61456145 Msa1205280:three_prime_UTR 30.0%
CAATATGTAAGAAATGGTGA+TGG + chr8_1:61456150-61456169 Msa1205280:three_prime_UTR 30.0%
ATGGGAGATAGTAAAATTGA+GGG + chr8_1:61456169-61456188 Msa1205280:three_prime_UTR 30.0%
! CATTTTACAATCCTAAGACA+TGG + chr8_1:61456345-61456364 Msa1205280:three_prime_UTR 30.0%
AATCTACAATACCATGTCTT+AGG - chr8_1:61456359-61456378 None:intergenic 30.0%
ATGCTAGGTCTTCATTCTAT+GGG - chr8_1:61452570-61452589 None:intergenic 35.0%
AATGCTAGGTCTTCATTCTA+TGG - chr8_1:61452571-61452590 None:intergenic 35.0%
GTGCCTTGGTTAGTATATAA+GGG - chr8_1:61452663-61452682 None:intergenic 35.0%
TGTGCCTTGGTTAGTATATA+AGG - chr8_1:61452664-61452683 None:intergenic 35.0%
! TGGTAAAAACTTGCTTGAAG+TGG - chr8_1:61452989-61453008 None:intergenic 35.0%
! TCAGATTTGAGAGGCATAAT+GGG - chr8_1:61453085-61453104 None:intergenic 35.0%
! ATCAGATTTGAGAGGCATAA+TGG - chr8_1:61453086-61453105 None:intergenic 35.0%
ATTATGCCTCTCAAATCTGA+TGG + chr8_1:61453085-61453104 Msa1205280:CDS 35.0%
ACTACTACATGCATAATGAG+GGG - chr8_1:61453314-61453333 None:intergenic 35.0%
GTACTACTACATGCATAATG+AGG - chr8_1:61453316-61453335 None:intergenic 35.0%
! GTTGGTTGTTCATGTTTTGT+TGG - chr8_1:61453390-61453409 None:intergenic 35.0%
!! AACCATGAGTTGATGTTAGA+AGG + chr8_1:61453442-61453461 Msa1205280:CDS 35.0%
!! ACCATGAGTTGATGTTAGAA+GGG + chr8_1:61453443-61453462 Msa1205280:CDS 35.0%
AAGCAAAGTCAAACTTCAAG+TGG + chr8_1:61453469-61453488 Msa1205280:CDS 35.0%
GACTTAGTGGTTTAAAGAAC+TGG + chr8_1:61453527-61453546 Msa1205280:CDS 35.0%
!! TGGATCCAATATTGGTTCAA+TGG + chr8_1:61453633-61453652 Msa1205280:CDS 35.0%
GCTATGGATACAAAGAAAAG+AGG + chr8_1:61453763-61453782 Msa1205280:CDS 35.0%
AGCAGAAGCAAATTGTTCAT+AGG + chr8_1:61453800-61453819 Msa1205280:CDS 35.0%
! CTCAATATAGAGGTGTAACA+AGG + chr8_1:61453854-61453873 Msa1205280:CDS 35.0%
GAGATATGAAGCTCATCTAT+GGG + chr8_1:61454004-61454023 Msa1205280:CDS 35.0%
! TTTTTGCTTTCTTTGCTTGG+CGG + chr8_1:61454300-61454319 Msa1205280:intron 35.0%
TGATGAGACACAGTTTATCT+TGG + chr8_1:61454348-61454367 Msa1205280:intron 35.0%
!! GATTTTAGGGGGTTATGATA+TGG + chr8_1:61454491-61454510 Msa1205280:intron 35.0%
GTGAGTTCTTTCATACTCTT+TGG + chr8_1:61455085-61455104 Msa1205280:intron 35.0%
TGTAATGTACTAGACACATG+TGG + chr8_1:61455146-61455165 Msa1205280:intron 35.0%
ATGTTCTGTTCCAATGTTTG+TGG + chr8_1:61455318-61455337 Msa1205280:intron 35.0%
TGTTCTGTTCCAATGTTTGT+GGG + chr8_1:61455319-61455338 Msa1205280:intron 35.0%
!! GAAACTTTTAGGTACTCAAG+AGG + chr8_1:61455417-61455436 Msa1205280:intron 35.0%
TTGTTGTCATATGCAGAAGA+AGG - chr8_1:61455631-61455650 None:intergenic 35.0%
CTGTTGAAGTTGTTGATGTT+GGG - chr8_1:61455707-61455726 None:intergenic 35.0%
TCTGTTGAAGTTGTTGATGT+TGG - chr8_1:61455708-61455727 None:intergenic 35.0%
!! AACTTTTTCCTCAGTGTCTT+TGG + chr8_1:61455762-61455781 Msa1205280:CDS 35.0%
!! TTTTGCAAGCTTGTTCTATC+TGG - chr8_1:61455895-61455914 None:intergenic 35.0%
GAGGGACAATATGTAAGAAA+TGG + chr8_1:61456144-61456163 Msa1205280:three_prime_UTR 35.0%
GATGGGAGATAGTAAAATTG+AGG + chr8_1:61456168-61456187 Msa1205280:three_prime_UTR 35.0%
GTGAAGGTCTTTCTCATACA+CGG + chr8_1:61452541-61452560 Msa1205280:five_prime_UTR 40.0%
TGCTAGGTCTTCATTCTATG+GGG - chr8_1:61452569-61452588 None:intergenic 40.0%
!!! TCTTTGGTTTTTGTGTGCCT+TGG - chr8_1:61452677-61452696 None:intergenic 40.0%
AGTTACTAAGAGGAGAAGAG+TGG - chr8_1:61453009-61453028 None:intergenic 40.0%
GGACTTGAACATGAAAATGC+TGG + chr8_1:61453043-61453062 Msa1205280:CDS 40.0%
AGAGATCCATCAGATTTGAG+AGG - chr8_1:61453094-61453113 None:intergenic 40.0%
ATGAAATGGAAGCTCTTAGC+AGG + chr8_1:61453116-61453135 Msa1205280:CDS 40.0%
AACATGCTGTCTAAGCTCAA+AGG - chr8_1:61453355-61453374 None:intergenic 40.0%
ACCCTTCTAACATCAACTCA+TGG - chr8_1:61453447-61453466 None:intergenic 40.0%
CTTCACCCATGTTTGATTGA+TGG - chr8_1:61453501-61453520 None:intergenic 40.0%
TCAAACATGGGTGAAGATCA+TGG + chr8_1:61453505-61453524 Msa1205280:CDS 40.0%
! AGGAATTTTCCAGCTAGTCA+TGG + chr8_1:61453556-61453575 Msa1205280:CDS 40.0%
GATGATTGTTCCTGTTGTAG+AGG + chr8_1:61453594-61453613 Msa1205280:CDS 40.0%
! CCTTCATTTTCCTCTACAAC+AGG - chr8_1:61453607-61453626 None:intergenic 40.0%
CCTGTTGTAGAGGAAAATGA+AGG + chr8_1:61453604-61453623 Msa1205280:CDS 40.0%
GAGGAAAATGAAGGTGAATG+TGG + chr8_1:61453613-61453632 Msa1205280:CDS 40.0%
GGTGAATGTGGATCCAATAT+TGG + chr8_1:61453625-61453644 Msa1205280:CDS 40.0%
AGCAGATGACATATTCTGTG+AGG - chr8_1:61453725-61453744 None:intergenic 40.0%
TTTATTAGGCATAGGTGGAC+TGG + chr8_1:61453981-61454000 Msa1205280:intron 40.0%
! TTATTAGGCATAGGTGGACT+GGG + chr8_1:61453982-61454001 Msa1205280:intron 40.0%
GGAGATATGAAGCTCATCTA+TGG + chr8_1:61454003-61454022 Msa1205280:CDS 40.0%
GACAACAGTTGCAAGAAAGA+AGG + chr8_1:61454026-61454045 Msa1205280:CDS 40.0%
AAAGAAGGCCAAAGCAGAAA+AGG + chr8_1:61454041-61454060 Msa1205280:CDS 40.0%
! CTTGTCTTCCTTTTCTGCTT+TGG - chr8_1:61454052-61454071 None:intergenic 40.0%
CAAAGCAGAAAAGGAAGACA+AGG + chr8_1:61454050-61454069 Msa1205280:CDS 40.0%
! GGATTCACACGATGATTTTG+CGG + chr8_1:61454098-61454117 Msa1205280:intron 40.0%
! TTTTGCTTTCTTTGCTTGGC+GGG + chr8_1:61454301-61454320 Msa1205280:intron 40.0%
ATCAAGCAGCACTCAAGTAT+TGG + chr8_1:61454538-61454557 Msa1205280:CDS 40.0%
TCAAGCAGCACTCAAGTATT+GGG + chr8_1:61454539-61454558 Msa1205280:CDS 40.0%
AACAGGGAAGTTTATGTGAG+TGG - chr8_1:61454571-61454590 None:intergenic 40.0%
! GGTCTTATCAGAAAAAGCAG+TGG + chr8_1:61454831-61454850 Msa1205280:intron 40.0%
! AAAAGCAGTGGATTCTCAAG+AGG + chr8_1:61454843-61454862 Msa1205280:CDS 40.0%
! AAAGCAGTGGATTCTCAAGA+GGG + chr8_1:61454844-61454863 Msa1205280:CDS 40.0%
CATTAGACATGACACTGACA+CGG - chr8_1:61455209-61455228 None:intergenic 40.0%
ACAAGCTAGAAGGAACAAAG+AGG + chr8_1:61455564-61455583 Msa1205280:CDS 40.0%
TTGAAGTTGTTGATGTTGGG+AGG - chr8_1:61455704-61455723 None:intergenic 40.0%
CATGTTATCCAAAGACACTG+AGG - chr8_1:61455773-61455792 None:intergenic 40.0%
GTTTCATCAAGAAGTAGCTG+AGG + chr8_1:61455792-61455811 Msa1205280:CDS 40.0%
AGTTTGAGCAGTTCAAGAGA+AGG + chr8_1:61455865-61455884 Msa1205280:CDS 40.0%
ACAAGCTTGCAAAATCTCTC+TGG + chr8_1:61455901-61455920 Msa1205280:CDS 40.0%
AAGGCCTAAGATGTTGTGAA+GGG - chr8_1:61455996-61456015 None:intergenic 40.0%
TTGTGTCAAAGCATGTTTCG+AGG + chr8_1:61456257-61456276 Msa1205280:three_prime_UTR 40.0%
GTATTCCAGCAAGCAATGCT+AGG - chr8_1:61452585-61452604 None:intergenic 45.0%
CTTAGCAGGTCACAAACACA+AGG + chr8_1:61453130-61453149 Msa1205280:CDS 45.0%
GGTGAAGATCATGGACTTAG+TGG + chr8_1:61453514-61453533 Msa1205280:CDS 45.0%
TGATCATGTCCATGACTAGC+TGG - chr8_1:61453568-61453587 None:intergenic 45.0%
! TCACACGATGATTTTGCGGA+CGG + chr8_1:61454102-61454121 Msa1205280:intron 45.0%
TTTGCTTTCTTTGCTTGGCG+GGG + chr8_1:61454302-61454321 Msa1205280:intron 45.0%
! CAAGCAGCACTCAAGTATTG+GGG + chr8_1:61454540-61454559 Msa1205280:CDS 45.0%
GGGAAGTTTATGTGAGTGGA+TGG - chr8_1:61454567-61454586 None:intergenic 45.0%
! AAGCAGTGGATTCTCAAGAG+GGG + chr8_1:61454845-61454864 Msa1205280:CDS 45.0%
CCTTGTTACTCCTCTGTACA+TGG - chr8_1:61454874-61454893 None:intergenic 45.0%
CCATGTACAGAGGAGTAACA+AGG + chr8_1:61454871-61454890 Msa1205280:CDS 45.0%
GACACCATCAACATGGAAGA+TGG + chr8_1:61455007-61455026 Msa1205280:intron 45.0%
CTTGCCATCTTCCATGTTGA+TGG - chr8_1:61455014-61455033 None:intergenic 45.0%
TATACGCGCACAACTACTAG+CGG - chr8_1:61455274-61455293 None:intergenic 45.0%
AGCTAGAAGGAACAAAGAGG+TGG + chr8_1:61455567-61455586 Msa1205280:CDS 45.0%
GAAGGCCTAAGATGTTGTGA+AGG - chr8_1:61455997-61456016 None:intergenic 45.0%
! ATCTGAGGCAAAGAAAGGGA+AGG - chr8_1:61456015-61456034 None:intergenic 45.0%
! TGGCATCTGAGGCAAAGAAA+GGG - chr8_1:61456019-61456038 None:intergenic 45.0%
! AGATGCCAGTTTTTGCAGCA+TGG + chr8_1:61456031-61456050 Msa1205280:CDS 45.0%
TCTGTCCATGCTGCAAAAAC+TGG - chr8_1:61456039-61456058 None:intergenic 45.0%
GAAGACCTAGCATTGCTTGC+TGG + chr8_1:61452577-61452596 Msa1205280:five_prime_UTR 50.0%
GCAGAAGCAGAAGCAGAAGA+AGG - chr8_1:61452953-61452972 None:intergenic 50.0%
ACACAGCTAGACTGAGAGCT+AGG - chr8_1:61453697-61453716 None:intergenic 50.0%
GGTAGCAGACACCATCAACA+TGG + chr8_1:61455000-61455019 Msa1205280:intron 50.0%
GGAAGATGGCAAGCTCGAAT+TGG + chr8_1:61455021-61455040 Msa1205280:CDS 50.0%
GCTCGAATTGGTAGAGTAGC+TGG + chr8_1:61455033-61455052 Msa1205280:CDS 50.0%
GGGACCCTTCACAACATCTT+AGG + chr8_1:61455989-61456008 Msa1205280:CDS 50.0%
! CTGGCATCTGAGGCAAAGAA+AGG - chr8_1:61456020-61456039 None:intergenic 50.0%
GCTGCAAAAACTGGCATCTG+AGG - chr8_1:61456030-61456049 None:intergenic 50.0%
AGAGGGGCTTCCATGTACAG+AGG + chr8_1:61454861-61454880 Msa1205280:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 61452534 61456387 61452534 ID=Msa1205280;Name=Msa1205280
chr8_1 mRNA 61452534 61456387 61452534 ID=Msa1205280-mRNA-1;Parent=Msa1205280;Name=Msa1205280-mRNA-1;_AED=0.12;_eAED=0.12;_QI=290|0.85|1|1|1|1|8|322|654
chr8_1 exon 61452534 61453151 61452534 ID=Msa1205280-mRNA-1:exon:19923;Parent=Msa1205280-mRNA-1
chr8_1 exon 61453251 61453875 61453251 ID=Msa1205280-mRNA-1:exon:19924;Parent=Msa1205280-mRNA-1
chr8_1 exon 61453989 61454071 61453989 ID=Msa1205280-mRNA-1:exon:19925;Parent=Msa1205280-mRNA-1
chr8_1 exon 61454499 61454587 61454499 ID=Msa1205280-mRNA-1:exon:19926;Parent=Msa1205280-mRNA-1
chr8_1 exon 61454691 61454764 61454691 ID=Msa1205280-mRNA-1:exon:19927;Parent=Msa1205280-mRNA-1
chr8_1 exon 61454842 61454892 61454842 ID=Msa1205280-mRNA-1:exon:19928;Parent=Msa1205280-mRNA-1
chr8_1 exon 61455008 61455084 61455008 ID=Msa1205280-mRNA-1:exon:19929;Parent=Msa1205280-mRNA-1
chr8_1 exon 61455428 61456387 61455428 ID=Msa1205280-mRNA-1:exon:19930;Parent=Msa1205280-mRNA-1
chr8_1 five_prime_UTR 61452534 61452823 61452534 ID=Msa1205280-mRNA-1:five_prime_utr;Parent=Msa1205280-mRNA-1
chr8_1 CDS 61452824 61453151 61452824 ID=Msa1205280-mRNA-1:cds;Parent=Msa1205280-mRNA-1
chr8_1 CDS 61453251 61453875 61453251 ID=Msa1205280-mRNA-1:cds;Parent=Msa1205280-mRNA-1
chr8_1 CDS 61453989 61454071 61453989 ID=Msa1205280-mRNA-1:cds;Parent=Msa1205280-mRNA-1
chr8_1 CDS 61454499 61454587 61454499 ID=Msa1205280-mRNA-1:cds;Parent=Msa1205280-mRNA-1
chr8_1 CDS 61454691 61454764 61454691 ID=Msa1205280-mRNA-1:cds;Parent=Msa1205280-mRNA-1
chr8_1 CDS 61454842 61454892 61454842 ID=Msa1205280-mRNA-1:cds;Parent=Msa1205280-mRNA-1
chr8_1 CDS 61455008 61455084 61455008 ID=Msa1205280-mRNA-1:cds;Parent=Msa1205280-mRNA-1
chr8_1 CDS 61455428 61456065 61455428 ID=Msa1205280-mRNA-1:cds;Parent=Msa1205280-mRNA-1
chr8_1 three_prime_UTR 61456066 61456387 61456066 ID=Msa1205280-mRNA-1:three_prime_utr;Parent=Msa1205280-mRNA-1
Gene Sequence

>Msa1205280

ATGAAGAGAATGGAAAACAATGATGATAGTGTTGACATTAACAATGAAAATAACTGGTTAGGTTTTTCACTCTCTCCTCAAATGAATAATATTGGTGTTACTTCACACACTCATCATCATTCACTGCCTTCTTCTGCTTCTGCTTCTGCTTCTGAAGTAGTTCCACTTCAAGCAAGTTTTTACCACTCTTCTCCTCTTAGTAACTATTGTTACTCTTATGGACTTGAACATGAAAATGCTGGCTTGTATTCATTACTTCCCATTATGCCTCTCAAATCTGATGGATCTCTTTATGAAATGGAAGCTCTTAGCAGGTCACAAACACAAGCAATGAGTACTACTTCAGCACCAAAACTAGAGAATTTTTTAGGTAATGAAACTATGGGGACCCCTCATTATGCATGTAGTAGTACTGTCACAGAAACAATGCCTTTGAGCTTAGACAGCATGTTCCAAAATCATATCCAACAAAACATGAACAACCAACAACAGTTGTCATATTATAACTCAACTTTGAGAAACCATGAGTTGATGTTAGAAGGGTCAAAGCAAAGTCAAACTTCAAGTGGAAATTTCCATCAATCAAACATGGGTGAAGATCATGGACTTAGTGGTTTAAAGAACTGGGTTTTAAGGAATTTTCCAGCTAGTCATGGACATGATCAGTCAAAGATGATTGTTCCTGTTGTAGAGGAAAATGAAGGTGAATGTGGATCCAATATTGGTTCAATGGCTTATGGAGATTTGCATTCTTTGAGTTTGTCAATGAGTCCTAGCTCTCAGTCTAGCTGTGTTACAACCTCACAGAATATGTCATCTGCTGTTGTTGAAAATTCTGTTGCTATGGATACAAAGAAAAGAGGAAGTGAAAAATTTGAGCAGAAGCAAATTGTTCATAGGAAATCTATTGATACTTTTGGTCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGGAGATATGAAGCTCATCTATGGGACAACAGTTGCAAGAAAGAAGGCCAAAGCAGAAAAGGAAGACAAGGGGGTTATGATATGGAAGAAAAAGCTGCTAGAGCTTATGATCAAGCAGCACTCAAGTATTGGGGACCATCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAGAATATGACAAGACAGGAATATGTTGCTCATTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCATCAACATGGAAGATGGCAAGCTCGAATTGGTAGAGTAGCTGGTAATAAAGATCTATATCTTGGAACTTTCAGTACTCAAGAGGAAGCAGCTGAAGCCTATGACATTGCAGCTATAAAATTCAGAGGAGCAAATGCAGTGACCAACTTTGATATAATAAAATATGATGTTGAAAAAATCATGGCTAGTAGTAACCTTCTTAACATTGAACAAGCTAGAAGGAACAAAGAGGTGGTAGATATTAGTACAACTCAATACATTGATCAGAACAAACCTTCTTCTGCATATGACAACAATAGCACTCAAGAAGCCATTTCAATGCAGAAGAATATGGTTTTGTATCAATCCTCCCAACATCAACAACTTCAACAGAATCAACCAAGATTTGAGAATGAAAGAACTCATCAAACTTTTTCCTCAGTGTCTTTGGATAACATGTTTCATCAAGAAGTAGCTGAGGAAGCAAGTAAGATGAGAACACATGTATCAAATGCTTCTTCATTGGCTACAAGTTTGAGCAGTTCAAGAGAAGGTAGTCCAGATAGAACAAGCTTGCAAAATCTCTCTGGAATAATGCCTTCAACAGCTTCAAAACTATTGGTTACTTCTGCTCCAAATAGTAATTTGAATTCTTGGGACCCTTCACAACATCTTAGGCCTTCCCTTTCTTTGCCTCAGATGCCAGTTTTTGCAGCATGGACAGATGCTTAG

Protein sequence

>Msa1205280

MKRMENNDDSVDINNENNWLGFSLSPQMNNIGVTSHTHHHSLPSSASASASEVVPLQASFYHSSPLSNYCYSYGLEHENAGLYSLLPIMPLKSDGSLYEMEALSRSQTQAMSTTSAPKLENFLGNETMGTPHYACSSTVTETMPLSLDSMFQNHIQQNMNNQQQLSYYNSTLRNHELMLEGSKQSQTSSGNFHQSNMGEDHGLSGLKNWVLRNFPASHGHDQSKMIVPVVEENEGECGSNIGSMAYGDLHSLSLSMSPSSQSSCVTTSQNMSSAVVENSVAMDTKKRGSEKFEQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDQAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGANAVTNFDIIKYDVEKIMASSNLLNIEQARRNKEVVDISTTQYIDQNKPSSAYDNNSTQEAISMQKNMVLYQSSQHQQLQQNQPRFENERTHQTFSSVSLDNMFHQEVAEEASKMRTHVSNASSLATSLSSSREGSPDRTSLQNLSGIMPSTASKLLVTSAPNSNLNSWDPSQHLRPSLSLPQMPVFAAWTDA*