Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869290 | XP_003618276.1 | 80.308 | 325 | 37 | 5 | 1 | 324 | 1 | 299 | 1.07e-169 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869290 | G7KIQ4 | 80.308 | 325 | 37 | 5 | 1 | 324 | 1 | 299 | 5.10e-170 | 483 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0106620 | Msa0869290 | 0.809537 | 1.801616e-50 | -8.615850e-47 |
| Msa0106710 | Msa0869290 | 0.812201 | 4.775995e-51 | -8.615850e-47 |
| Msa0450400 | Msa0869290 | -0.803744 | 3.012490e-49 | -8.615850e-47 |
| Msa0241140 | Msa0869290 | 0.808273 | 3.359077e-50 | -8.615850e-47 |
| Msa0269560 | Msa0869290 | 0.802947 | 4.404900e-49 | -8.615850e-47 |
| Msa0278570 | Msa0869290 | 0.801530 | 8.622127e-49 | -8.615850e-47 |
| Msa0317970 | Msa0869290 | 0.800170 | 1.633989e-48 | -8.615850e-47 |
| Msa0869290 | Msa0902830 | 0.819243 | 1.286666e-52 | -8.615850e-47 |
| Msa0869290 | Msa1024680 | 0.805017 | 1.635681e-49 | -8.615850e-47 |
| Msa0869290 | Msa1063420 | 0.817415 | 3.336937e-52 | -8.615850e-47 |
| Msa0869290 | Msa1393840 | -0.805649 | 1.205329e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0869290 | MtrunA17_Chr6g0450611 | 80.308 | 325 | 37 | 5 | 1 | 324 | 1 | 299 | 9.82e-174 | 483 |
| Msa0869290 | MtrunA17_Chr6g0450621 | 70.154 | 325 | 56 | 9 | 1 | 324 | 1 | 285 | 1.53e-140 | 399 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTAACTCTTTCTTATA+AGG | 0.191202 | 6_1:-3420521 | None:intergenic |
| CCTTATAAGAAAGAGTTAAT+TGG | 0.208265 | 6_1:+3420521 | Msa0869290:CDS |
| GAAATCGCCGATTGCTTCTT+CGG | 0.280502 | 6_1:+3420181 | Msa0869290:CDS |
| TTTGTTAATTCCTGCCAAAA+AGG | 0.322837 | 6_1:+3420343 | Msa0869290:CDS |
| CTTATAAGAAAGAGTTAATT+GGG | 0.371538 | 6_1:+3420522 | Msa0869290:CDS |
| TCGCCGTCGCCGTCGAAGAT+CGG | 0.378080 | 6_1:-3419828 | None:intergenic |
| AAGGTTGATAGCGGTGGAAA+TGG | 0.388358 | 6_1:+3420374 | Msa0869290:CDS |
| CGCCGTCGCCGTCGAAGATC+GGG | 0.391629 | 6_1:-3419827 | None:intergenic |
| CGGCAGAGACGTATTGTTTG+TGG | 0.409947 | 6_1:+3420069 | Msa0869290:CDS |
| AGACGATCTGGATTCGGTTC+CGG | 0.411883 | 6_1:+3420049 | Msa0869290:CDS |
| TCGTTGAAGAAACTATTAAT+CGG | 0.438320 | 6_1:+3419981 | Msa0869290:CDS |
| TCGTGTACCTTCGTCGGAGG+TGG | 0.448477 | 6_1:+3420025 | Msa0869290:CDS |
| GTCGGAGGTGGAAGACGATC+TGG | 0.461633 | 6_1:+3420037 | Msa0869290:CDS |
| TGCAAGAAAAGCAATTCAAC+TGG | 0.465473 | 6_1:+3420233 | Msa0869290:CDS |
| GAAGCTATCGGAGATGAATT+CGG | 0.481150 | 6_1:-3420095 | None:intergenic |
| GAATTCTCCGATCAAATTCA+AGG | 0.485620 | 6_1:+3420136 | Msa0869290:CDS |
| TTTAATGCTAATGTTGGAAG+AGG | 0.486791 | 6_1:+3420557 | Msa0869290:CDS |
| GGTGGAAGACGATCTGGATT+CGG | 0.486924 | 6_1:+3420043 | Msa0869290:CDS |
| TTGCTTTCCTTGAATTTGAT+CGG | 0.493522 | 6_1:-3420143 | None:intergenic |
| TTCCCGATCTTCGACGGCGA+CGG | 0.498667 | 6_1:+3419825 | Msa0869290:CDS |
| TTGCATTGCGGCGGTGATTG+TGG | 0.502132 | 6_1:-3419794 | None:intergenic |
| GAGTTAATTGGGTTTAGTGT+TGG | 0.514765 | 6_1:+3420533 | Msa0869290:CDS |
| TCCGGCGAAGGTGTCGGCGA+TGG | 0.526883 | 6_1:+3420451 | Msa0869290:CDS |
| AACCTCAGAATCTTCAACAA+TGG | 0.529049 | 6_1:+3419641 | Msa0869290:CDS |
| AAGAAACTCCGACGTGGCGG+AGG | 0.530091 | 6_1:+3419857 | Msa0869290:CDS |
| AAAATTAATCAAACATGAAG+AGG | 0.530368 | 6_1:-3420584 | None:intergenic |
| TCGTCTTCCACCTCCGACGA+AGG | 0.532182 | 6_1:-3420032 | None:intergenic |
| GAGGCCACCGAAGAAGCAAT+CGG | 0.534077 | 6_1:-3420188 | None:intergenic |
| GAAGAATAAGTACTGAAACT+TGG | 0.535683 | 6_1:-3419678 | None:intergenic |
| ATTAATCGGAAATGAGAAAG+AGG | 0.549217 | 6_1:+3419995 | Msa0869290:CDS |
| CACAAACAATACGTCTCTGC+CGG | 0.550049 | 6_1:-3420068 | None:intergenic |
| TGGAAGAAAGAAAGAGACAA+GGG | 0.553022 | 6_1:+3420484 | Msa0869290:CDS |
| AATTTAAAGGTTGATAGCGG+TGG | 0.553238 | 6_1:+3420368 | Msa0869290:CDS |
| GTCCATTGTTGAAGATTCTG+AGG | 0.561015 | 6_1:-3419643 | None:intergenic |
| TCCATCGCCGACACCTTCGC+CGG | 0.561835 | 6_1:-3420452 | None:intergenic |
| GAATTCATCGTAGAAGCCGC+TGG | 0.570101 | 6_1:-3420119 | None:intergenic |
| GGAAGTTTCTGAGCTTACTC+CGG | 0.574954 | 6_1:+3420288 | Msa0869290:CDS |
| CAACGAAATCGTGACGGCGG+CGG | 0.579746 | 6_1:+3419921 | Msa0869290:CDS |
| GAAAACTCCGGCGAAGGTGT+CGG | 0.588472 | 6_1:+3420445 | Msa0869290:CDS |
| GATAATTTAAAGGTTGATAG+CGG | 0.591726 | 6_1:+3420365 | Msa0869290:CDS |
| ATTCTTCTTCATCTTCGCGA+TGG | 0.591816 | 6_1:+3420267 | Msa0869290:CDS |
| ATCGCCGATTGCTTCTTCGG+TGG | 0.598181 | 6_1:+3420184 | Msa0869290:CDS |
| GATAGCGGTGGAAATGGAAG+CGG | 0.608859 | 6_1:+3420380 | Msa0869290:CDS |
| TGAGAAGAAAACTCCGGCGA+AGG | 0.609618 | 6_1:+3420439 | Msa0869290:CDS |
| ATGGAAGAAAGAAAGAGACA+AGG | 0.614071 | 6_1:+3420483 | Msa0869290:CDS |
| TCATTGAAGAATTTACTGAT+CGG | 0.618400 | 6_1:+3419888 | Msa0869290:CDS |
| GAAGCCGCTGGAGAAGCTAT+CGG | 0.626373 | 6_1:-3420107 | None:intergenic |
| AAGAAGAAACTCTGATGCGG+CGG | 0.636018 | 6_1:+3419947 | Msa0869290:CDS |
| ATCTCCGATAGCTTCTCCAG+CGG | 0.637212 | 6_1:+3420103 | Msa0869290:CDS |
| CTCCGGCGAAGCAAAAGCGA+CGG | 0.638237 | 6_1:+3420305 | Msa0869290:CDS |
| CACTTGCACAGAGAATTCAT+CGG | 0.639353 | 6_1:-3420212 | None:intergenic |
| TCGGAAATGAGAAAGAGGAA+CGG | 0.643710 | 6_1:+3420000 | Msa0869290:CDS |
| ACGGAATCGTGTACCTTCGT+CGG | 0.645918 | 6_1:+3420019 | Msa0869290:CDS |
| GGAAAACGTCTGTTGCATTG+CGG | 0.656756 | 6_1:-3419806 | None:intergenic |
| AAACGTCTGTTGCATTGCGG+CGG | 0.659399 | 6_1:-3419803 | None:intergenic |
| ATTTGAAACCTCCGCCACGT+CGG | 0.664765 | 6_1:-3419865 | None:intergenic |
| GAATCGTGTACCTTCGTCGG+AGG | 0.673568 | 6_1:+3420022 | Msa0869290:CDS |
| GAGAAGAAACTCCGACGTGG+CGG | 0.680408 | 6_1:+3419854 | Msa0869290:CDS |
| GGTGAGTGAGAAGAAAACTC+CGG | 0.686104 | 6_1:+3420433 | Msa0869290:CDS |
| GTGAAACAACGAAATCGTGA+CGG | 0.688783 | 6_1:+3419915 | Msa0869290:CDS |
| AAGAAGAAGAAACTCTGATG+CGG | 0.694924 | 6_1:+3419944 | Msa0869290:CDS |
| GCACAGAGAATTCATCGGAG+AGG | 0.711845 | 6_1:-3420207 | None:intergenic |
| AAACAACGAAATCGTGACGG+CGG | 0.721060 | 6_1:+3419918 | Msa0869290:CDS |
| CGAGAGAAGAAACTCCGACG+TGG | 0.723825 | 6_1:+3419851 | Msa0869290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACCTTTAAATTATCCTTTT+TGG | - | chr6_1:3420360-3420379 | None:intergenic | 20.0% |
| !! | CTTATAAGAAAGAGTTAATT+GGG | + | chr6_1:3420522-3420541 | Msa0869290:CDS | 20.0% |
| !!! | AACCTTTAAATTATCCTTTT+TGG | - | chr6_1:3420360-3420379 | None:intergenic | 20.0% |
| !! | CTTATAAGAAAGAGTTAATT+GGG | + | chr6_1:3420522-3420541 | Msa0869290:CDS | 20.0% |
| ! | TCATTGAAGAATTTACTGAT+CGG | + | chr6_1:3419888-3419907 | Msa0869290:CDS | 25.0% |
| ! | TCGTTGAAGAAACTATTAAT+CGG | + | chr6_1:3419981-3420000 | Msa0869290:CDS | 25.0% |
| !!! | TTTAAATTATCCTTTTTGGC+AGG | - | chr6_1:3420356-3420375 | None:intergenic | 25.0% |
| ! | TGCCAAAAAGGATAATTTAA+AGG | + | chr6_1:3420355-3420374 | Msa0869290:CDS | 25.0% |
| !!! | GATAATTTAAAGGTTGATAG+CGG | + | chr6_1:3420365-3420384 | Msa0869290:CDS | 25.0% |
| ! | CCAATTAACTCTTTCTTATA+AGG | - | chr6_1:3420524-3420543 | None:intergenic | 25.0% |
| ! | CCTTATAAGAAAGAGTTAAT+TGG | + | chr6_1:3420521-3420540 | Msa0869290:CDS | 25.0% |
| ! | TCATTGAAGAATTTACTGAT+CGG | + | chr6_1:3419888-3419907 | Msa0869290:CDS | 25.0% |
| ! | TCGTTGAAGAAACTATTAAT+CGG | + | chr6_1:3419981-3420000 | Msa0869290:CDS | 25.0% |
| !!! | TTTAAATTATCCTTTTTGGC+AGG | - | chr6_1:3420356-3420375 | None:intergenic | 25.0% |
| ! | TGCCAAAAAGGATAATTTAA+AGG | + | chr6_1:3420355-3420374 | Msa0869290:CDS | 25.0% |
| !!! | GATAATTTAAAGGTTGATAG+CGG | + | chr6_1:3420365-3420384 | Msa0869290:CDS | 25.0% |
| ! | CCAATTAACTCTTTCTTATA+AGG | - | chr6_1:3420524-3420543 | None:intergenic | 25.0% |
| ! | CCTTATAAGAAAGAGTTAAT+TGG | + | chr6_1:3420521-3420540 | Msa0869290:CDS | 25.0% |
| !! | GAAGAATAAGTACTGAAACT+TGG | - | chr6_1:3419681-3419700 | None:intergenic | 30.0% |
| ATTAATCGGAAATGAGAAAG+AGG | + | chr6_1:3419995-3420014 | Msa0869290:CDS | 30.0% | |
| TTGCTTTCCTTGAATTTGAT+CGG | - | chr6_1:3420146-3420165 | None:intergenic | 30.0% | |
| TTTGTTAATTCCTGCCAAAA+AGG | + | chr6_1:3420343-3420362 | Msa0869290:CDS | 30.0% | |
| !!! | GTTGGTTTTAATGCTAATGT+TGG | + | chr6_1:3420551-3420570 | Msa0869290:CDS | 30.0% |
| TTTAATGCTAATGTTGGAAG+AGG | + | chr6_1:3420557-3420576 | Msa0869290:CDS | 30.0% | |
| !! | GAAGAATAAGTACTGAAACT+TGG | - | chr6_1:3419681-3419700 | None:intergenic | 30.0% |
| ATTAATCGGAAATGAGAAAG+AGG | + | chr6_1:3419995-3420014 | Msa0869290:CDS | 30.0% | |
| TTGCTTTCCTTGAATTTGAT+CGG | - | chr6_1:3420146-3420165 | None:intergenic | 30.0% | |
| TTTGTTAATTCCTGCCAAAA+AGG | + | chr6_1:3420343-3420362 | Msa0869290:CDS | 30.0% | |
| !!! | GTTGGTTTTAATGCTAATGT+TGG | + | chr6_1:3420551-3420570 | Msa0869290:CDS | 30.0% |
| TTTAATGCTAATGTTGGAAG+AGG | + | chr6_1:3420557-3420576 | Msa0869290:CDS | 30.0% | |
| AACCTCAGAATCTTCAACAA+TGG | + | chr6_1:3419641-3419660 | Msa0869290:CDS | 35.0% | |
| AAGAAGAAGAAACTCTGATG+CGG | + | chr6_1:3419944-3419963 | Msa0869290:CDS | 35.0% | |
| GAATTCTCCGATCAAATTCA+AGG | + | chr6_1:3420136-3420155 | Msa0869290:CDS | 35.0% | |
| TGCAAGAAAAGCAATTCAAC+TGG | + | chr6_1:3420233-3420252 | Msa0869290:CDS | 35.0% | |
| !! | AATTTAAAGGTTGATAGCGG+TGG | + | chr6_1:3420368-3420387 | Msa0869290:CDS | 35.0% |
| ATGGAAGAAAGAAAGAGACA+AGG | + | chr6_1:3420483-3420502 | Msa0869290:CDS | 35.0% | |
| TGGAAGAAAGAAAGAGACAA+GGG | + | chr6_1:3420484-3420503 | Msa0869290:CDS | 35.0% | |
| GAGTTAATTGGGTTTAGTGT+TGG | + | chr6_1:3420533-3420552 | Msa0869290:CDS | 35.0% | |
| AACCTCAGAATCTTCAACAA+TGG | + | chr6_1:3419641-3419660 | Msa0869290:CDS | 35.0% | |
| AAGAAGAAGAAACTCTGATG+CGG | + | chr6_1:3419944-3419963 | Msa0869290:CDS | 35.0% | |
| GAATTCTCCGATCAAATTCA+AGG | + | chr6_1:3420136-3420155 | Msa0869290:CDS | 35.0% | |
| TGCAAGAAAAGCAATTCAAC+TGG | + | chr6_1:3420233-3420252 | Msa0869290:CDS | 35.0% | |
| !! | AATTTAAAGGTTGATAGCGG+TGG | + | chr6_1:3420368-3420387 | Msa0869290:CDS | 35.0% |
| ATGGAAGAAAGAAAGAGACA+AGG | + | chr6_1:3420483-3420502 | Msa0869290:CDS | 35.0% | |
| TGGAAGAAAGAAAGAGACAA+GGG | + | chr6_1:3420484-3420503 | Msa0869290:CDS | 35.0% | |
| GAGTTAATTGGGTTTAGTGT+TGG | + | chr6_1:3420533-3420552 | Msa0869290:CDS | 35.0% | |
| GTCCATTGTTGAAGATTCTG+AGG | - | chr6_1:3419646-3419665 | None:intergenic | 40.0% | |
| GTGAAACAACGAAATCGTGA+CGG | + | chr6_1:3419915-3419934 | Msa0869290:CDS | 40.0% | |
| TCGGAAATGAGAAAGAGGAA+CGG | + | chr6_1:3420000-3420019 | Msa0869290:CDS | 40.0% | |
| GAAGCTATCGGAGATGAATT+CGG | - | chr6_1:3420098-3420117 | None:intergenic | 40.0% | |
| CACTTGCACAGAGAATTCAT+CGG | - | chr6_1:3420215-3420234 | None:intergenic | 40.0% | |
| ATTCTTCTTCATCTTCGCGA+TGG | + | chr6_1:3420267-3420286 | Msa0869290:CDS | 40.0% | |
| !!! | ACTCACCGGAATCTTTTTTC+CGG | - | chr6_1:3420420-3420439 | None:intergenic | 40.0% |
| GTCCATTGTTGAAGATTCTG+AGG | - | chr6_1:3419646-3419665 | None:intergenic | 40.0% | |
| GTGAAACAACGAAATCGTGA+CGG | + | chr6_1:3419915-3419934 | Msa0869290:CDS | 40.0% | |
| TCGGAAATGAGAAAGAGGAA+CGG | + | chr6_1:3420000-3420019 | Msa0869290:CDS | 40.0% | |
| GAAGCTATCGGAGATGAATT+CGG | - | chr6_1:3420098-3420117 | None:intergenic | 40.0% | |
| CACTTGCACAGAGAATTCAT+CGG | - | chr6_1:3420215-3420234 | None:intergenic | 40.0% | |
| ATTCTTCTTCATCTTCGCGA+TGG | + | chr6_1:3420267-3420286 | Msa0869290:CDS | 40.0% | |
| !!! | ACTCACCGGAATCTTTTTTC+CGG | - | chr6_1:3420420-3420439 | None:intergenic | 40.0% |
| GGAAAACGTCTGTTGCATTG+CGG | - | chr6_1:3419809-3419828 | None:intergenic | 45.0% | |
| AAACAACGAAATCGTGACGG+CGG | + | chr6_1:3419918-3419937 | Msa0869290:CDS | 45.0% | |
| AAGAAGAAACTCTGATGCGG+CGG | + | chr6_1:3419947-3419966 | Msa0869290:CDS | 45.0% | |
| CACAAACAATACGTCTCTGC+CGG | - | chr6_1:3420071-3420090 | None:intergenic | 45.0% | |
| ! | GAAATCGCCGATTGCTTCTT+CGG | + | chr6_1:3420181-3420200 | Msa0869290:CDS | 45.0% |
| GGAAGTTTCTGAGCTTACTC+CGG | + | chr6_1:3420288-3420307 | Msa0869290:CDS | 45.0% | |
| !! | AAGGTTGATAGCGGTGGAAA+TGG | + | chr6_1:3420374-3420393 | Msa0869290:CDS | 45.0% |
| AGCGGTGAAAAAAACGTTGC+CGG | + | chr6_1:3420398-3420417 | Msa0869290:CDS | 45.0% | |
| CGTTGCCGGAAAAAAGATTC+CGG | + | chr6_1:3420412-3420431 | Msa0869290:CDS | 45.0% | |
| ! | GGAGTTTTCTTCTCACTCAC+CGG | - | chr6_1:3420434-3420453 | None:intergenic | 45.0% |
| GGTGAGTGAGAAGAAAACTC+CGG | + | chr6_1:3420433-3420452 | Msa0869290:CDS | 45.0% | |
| !!! | TCGGCGATGGAAGTGTTTTA+TGG | + | chr6_1:3420464-3420483 | Msa0869290:CDS | 45.0% |
| GGAAAACGTCTGTTGCATTG+CGG | - | chr6_1:3419809-3419828 | None:intergenic | 45.0% | |
| AAACAACGAAATCGTGACGG+CGG | + | chr6_1:3419918-3419937 | Msa0869290:CDS | 45.0% | |
| AAGAAGAAACTCTGATGCGG+CGG | + | chr6_1:3419947-3419966 | Msa0869290:CDS | 45.0% | |
| CACAAACAATACGTCTCTGC+CGG | - | chr6_1:3420071-3420090 | None:intergenic | 45.0% | |
| ! | GAAATCGCCGATTGCTTCTT+CGG | + | chr6_1:3420181-3420200 | Msa0869290:CDS | 45.0% |
| GGAAGTTTCTGAGCTTACTC+CGG | + | chr6_1:3420288-3420307 | Msa0869290:CDS | 45.0% | |
| !! | AAGGTTGATAGCGGTGGAAA+TGG | + | chr6_1:3420374-3420393 | Msa0869290:CDS | 45.0% |
| AGCGGTGAAAAAAACGTTGC+CGG | + | chr6_1:3420398-3420417 | Msa0869290:CDS | 45.0% | |
| CGTTGCCGGAAAAAAGATTC+CGG | + | chr6_1:3420412-3420431 | Msa0869290:CDS | 45.0% | |
| ! | GGAGTTTTCTTCTCACTCAC+CGG | - | chr6_1:3420434-3420453 | None:intergenic | 45.0% |
| GGTGAGTGAGAAGAAAACTC+CGG | + | chr6_1:3420433-3420452 | Msa0869290:CDS | 45.0% | |
| !!! | TCGGCGATGGAAGTGTTTTA+TGG | + | chr6_1:3420464-3420483 | Msa0869290:CDS | 45.0% |
| AAACGTCTGTTGCATTGCGG+CGG | - | chr6_1:3419806-3419825 | None:intergenic | 50.0% | |
| ! | GACGTTTTCCCGATCTTCGA+CGG | + | chr6_1:3419819-3419838 | Msa0869290:CDS | 50.0% |
| ! | ATTTGAAACCTCCGCCACGT+CGG | - | chr6_1:3419868-3419887 | None:intergenic | 50.0% |
| ACGGAATCGTGTACCTTCGT+CGG | + | chr6_1:3420019-3420038 | Msa0869290:CDS | 50.0% | |
| GGTGGAAGACGATCTGGATT+CGG | + | chr6_1:3420043-3420062 | Msa0869290:CDS | 50.0% | |
| ! | AGACGATCTGGATTCGGTTC+CGG | + | chr6_1:3420049-3420068 | Msa0869290:CDS | 50.0% |
| CGGCAGAGACGTATTGTTTG+TGG | + | chr6_1:3420069-3420088 | Msa0869290:CDS | 50.0% | |
| ATCTCCGATAGCTTCTCCAG+CGG | + | chr6_1:3420103-3420122 | Msa0869290:CDS | 50.0% | |
| GAATTCATCGTAGAAGCCGC+TGG | - | chr6_1:3420122-3420141 | None:intergenic | 50.0% | |
| GCACAGAGAATTCATCGGAG+AGG | - | chr6_1:3420210-3420229 | None:intergenic | 50.0% | |
| ! | GATAGCGGTGGAAATGGAAG+CGG | + | chr6_1:3420380-3420399 | Msa0869290:CDS | 50.0% |
| TGAGAAGAAAACTCCGGCGA+AGG | + | chr6_1:3420439-3420458 | Msa0869290:CDS | 50.0% | |
| AAACGTCTGTTGCATTGCGG+CGG | - | chr6_1:3419806-3419825 | None:intergenic | 50.0% | |
| ! | GACGTTTTCCCGATCTTCGA+CGG | + | chr6_1:3419819-3419838 | Msa0869290:CDS | 50.0% |
| ! | ATTTGAAACCTCCGCCACGT+CGG | - | chr6_1:3419868-3419887 | None:intergenic | 50.0% |
| ACGGAATCGTGTACCTTCGT+CGG | + | chr6_1:3420019-3420038 | Msa0869290:CDS | 50.0% | |
| GGTGGAAGACGATCTGGATT+CGG | + | chr6_1:3420043-3420062 | Msa0869290:CDS | 50.0% | |
| ! | AGACGATCTGGATTCGGTTC+CGG | + | chr6_1:3420049-3420068 | Msa0869290:CDS | 50.0% |
| CGGCAGAGACGTATTGTTTG+TGG | + | chr6_1:3420069-3420088 | Msa0869290:CDS | 50.0% | |
| ATCTCCGATAGCTTCTCCAG+CGG | + | chr6_1:3420103-3420122 | Msa0869290:CDS | 50.0% | |
| GAATTCATCGTAGAAGCCGC+TGG | - | chr6_1:3420122-3420141 | None:intergenic | 50.0% | |
| GCACAGAGAATTCATCGGAG+AGG | - | chr6_1:3420210-3420229 | None:intergenic | 50.0% | |
| ! | GATAGCGGTGGAAATGGAAG+CGG | + | chr6_1:3420380-3420399 | Msa0869290:CDS | 50.0% |
| TGAGAAGAAAACTCCGGCGA+AGG | + | chr6_1:3420439-3420458 | Msa0869290:CDS | 50.0% | |
| TTGCATTGCGGCGGTGATTG+TGG | - | chr6_1:3419797-3419816 | None:intergenic | 55.0% | |
| CGAGAGAAGAAACTCCGACG+TGG | + | chr6_1:3419851-3419870 | Msa0869290:CDS | 55.0% | |
| GAGAAGAAACTCCGACGTGG+CGG | + | chr6_1:3419854-3419873 | Msa0869290:CDS | 55.0% | |
| GAATCGTGTACCTTCGTCGG+AGG | + | chr6_1:3420022-3420041 | Msa0869290:CDS | 55.0% | |
| GAAGCCGCTGGAGAAGCTAT+CGG | - | chr6_1:3420110-3420129 | None:intergenic | 55.0% | |
| ! | ATCGCCGATTGCTTCTTCGG+TGG | + | chr6_1:3420184-3420203 | Msa0869290:CDS | 55.0% |
| GAGGCCACCGAAGAAGCAAT+CGG | - | chr6_1:3420191-3420210 | None:intergenic | 55.0% | |
| !!! | TTCCGTCGCTTTTGCTTCGC+CGG | - | chr6_1:3420310-3420329 | None:intergenic | 55.0% |
| ! | GAAAACTCCGGCGAAGGTGT+CGG | + | chr6_1:3420445-3420464 | Msa0869290:CDS | 55.0% |
| TTGCATTGCGGCGGTGATTG+TGG | - | chr6_1:3419797-3419816 | None:intergenic | 55.0% | |
| CGAGAGAAGAAACTCCGACG+TGG | + | chr6_1:3419851-3419870 | Msa0869290:CDS | 55.0% | |
| GAGAAGAAACTCCGACGTGG+CGG | + | chr6_1:3419854-3419873 | Msa0869290:CDS | 55.0% | |
| GAATCGTGTACCTTCGTCGG+AGG | + | chr6_1:3420022-3420041 | Msa0869290:CDS | 55.0% | |
| GAAGCCGCTGGAGAAGCTAT+CGG | - | chr6_1:3420110-3420129 | None:intergenic | 55.0% | |
| ! | ATCGCCGATTGCTTCTTCGG+TGG | + | chr6_1:3420184-3420203 | Msa0869290:CDS | 55.0% |
| GAGGCCACCGAAGAAGCAAT+CGG | - | chr6_1:3420191-3420210 | None:intergenic | 55.0% | |
| !!! | TTCCGTCGCTTTTGCTTCGC+CGG | - | chr6_1:3420310-3420329 | None:intergenic | 55.0% |
| ! | GAAAACTCCGGCGAAGGTGT+CGG | + | chr6_1:3420445-3420464 | Msa0869290:CDS | 55.0% |
| TTCCCGATCTTCGACGGCGA+CGG | + | chr6_1:3419825-3419844 | Msa0869290:CDS | 60.0% | |
| AAGAAACTCCGACGTGGCGG+AGG | + | chr6_1:3419857-3419876 | Msa0869290:CDS | 60.0% | |
| CAACGAAATCGTGACGGCGG+CGG | + | chr6_1:3419921-3419940 | Msa0869290:CDS | 60.0% | |
| TCGTGTACCTTCGTCGGAGG+TGG | + | chr6_1:3420025-3420044 | Msa0869290:CDS | 60.0% | |
| TCGTCTTCCACCTCCGACGA+AGG | - | chr6_1:3420035-3420054 | None:intergenic | 60.0% | |
| GTCGGAGGTGGAAGACGATC+TGG | + | chr6_1:3420037-3420056 | Msa0869290:CDS | 60.0% | |
| CTCCGGCGAAGCAAAAGCGA+CGG | + | chr6_1:3420305-3420324 | Msa0869290:CDS | 60.0% | |
| TTCCCGATCTTCGACGGCGA+CGG | + | chr6_1:3419825-3419844 | Msa0869290:CDS | 60.0% | |
| AAGAAACTCCGACGTGGCGG+AGG | + | chr6_1:3419857-3419876 | Msa0869290:CDS | 60.0% | |
| CAACGAAATCGTGACGGCGG+CGG | + | chr6_1:3419921-3419940 | Msa0869290:CDS | 60.0% | |
| TCGTGTACCTTCGTCGGAGG+TGG | + | chr6_1:3420025-3420044 | Msa0869290:CDS | 60.0% | |
| TCGTCTTCCACCTCCGACGA+AGG | - | chr6_1:3420035-3420054 | None:intergenic | 60.0% | |
| GTCGGAGGTGGAAGACGATC+TGG | + | chr6_1:3420037-3420056 | Msa0869290:CDS | 60.0% | |
| CTCCGGCGAAGCAAAAGCGA+CGG | + | chr6_1:3420305-3420324 | Msa0869290:CDS | 60.0% | |
| TCGCCGTCGCCGTCGAAGAT+CGG | - | chr6_1:3419831-3419850 | None:intergenic | 65.0% | |
| TCCATCGCCGACACCTTCGC+CGG | - | chr6_1:3420455-3420474 | None:intergenic | 65.0% | |
| TCGCCGTCGCCGTCGAAGAT+CGG | - | chr6_1:3419831-3419850 | None:intergenic | 65.0% | |
| TCCATCGCCGACACCTTCGC+CGG | - | chr6_1:3420455-3420474 | None:intergenic | 65.0% | |
| CGCCGTCGCCGTCGAAGATC+GGG | - | chr6_1:3419830-3419849 | None:intergenic | 70.0% | |
| !! | TCCGGCGAAGGTGTCGGCGA+TGG | + | chr6_1:3420451-3420470 | Msa0869290:CDS | 70.0% |
| CGCCGTCGCCGTCGAAGATC+GGG | - | chr6_1:3419830-3419849 | None:intergenic | 70.0% | |
| !! | TCCGGCGAAGGTGTCGGCGA+TGG | + | chr6_1:3420451-3420470 | Msa0869290:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 3419624 | 3420598 | 3419624 | ID=Msa0869290;Name=Msa0869290 |
| chr6_1 | mRNA | 3419624 | 3420598 | 3419624 | ID=Msa0869290-mRNA-1;Parent=Msa0869290;Name=Msa0869290-mRNA-1;_AED=0.00;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|324 |
| chr6_1 | exon | 3419624 | 3420598 | 3419624 | ID=Msa0869290-mRNA-1:exon:1029;Parent=Msa0869290-mRNA-1 |
| chr6_1 | CDS | 3419624 | 3420598 | 3419624 | ID=Msa0869290-mRNA-1:cds;Parent=Msa0869290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
