Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171060 | sp|Q9SK27|ENL1_ARATH | 39.000 | 100 | 57 | 2 | 30 | 129 | 36 | 131 | 1.54e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171060 | I3SLL8 | 95.789 | 190 | 7 | 1 | 1 | 190 | 1 | 189 | 6.60e-128 | 367 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031080 | Msa0171060 | 0.961365 | 1.286629e-119 | -8.615850e-47 |
| Msa0031120 | Msa0171060 | 0.857117 | 2.029990e-62 | -8.615850e-47 |
| Msa0078390 | Msa0171060 | 0.883515 | 4.203389e-71 | -8.615850e-47 |
| Msa0126130 | Msa0171060 | 0.915327 | 6.711439e-85 | -8.615850e-47 |
| Msa0147680 | Msa0171060 | 0.821572 | 3.760144e-53 | -8.615850e-47 |
| Msa0171060 | Msa0566460 | 0.830328 | 3.123585e-55 | -8.615850e-47 |
| Msa0171060 | Msa0647320 | 0.804083 | 2.560982e-49 | -8.615850e-47 |
| Msa0171060 | Msa0658120 | 0.810908 | 9.122336e-51 | -8.615850e-47 |
| Msa0171060 | Msa0689830 | 0.847697 | 9.813334e-60 | -8.615850e-47 |
| Msa0171060 | Msa0702970 | 0.814935 | 1.195640e-51 | -8.615850e-47 |
| Msa0171060 | Msa0731780 | 0.819598 | 1.067669e-52 | -8.615850e-47 |
| Msa0171060 | Msa0771910 | 0.854630 | 1.082868e-61 | -8.615850e-47 |
| Msa0171060 | Msa0810080 | 0.826014 | 3.422920e-54 | -8.615850e-47 |
| Msa0171060 | Msa0846900 | 0.834269 | 3.304447e-56 | -8.615850e-47 |
| Msa0171060 | Msa0850600 | 0.849313 | 3.502573e-60 | -8.615850e-47 |
| Msa0171060 | Msa0870090 | 0.804283 | 2.326447e-49 | -8.615850e-47 |
| Msa0171060 | Msa0901820 | 0.802701 | 4.952411e-49 | -8.615850e-47 |
| Msa0171060 | Msa1021560 | 0.804206 | 2.414251e-49 | -8.615850e-47 |
| Msa0171060 | Msa1041170 | 0.824763 | 6.768054e-54 | -8.615850e-47 |
| Msa0171060 | Msa1105580 | 0.802082 | 6.640088e-49 | -8.615850e-47 |
| Msa0171060 | Msa1124210 | 0.869998 | 2.033449e-66 | -8.615850e-47 |
| Msa0171060 | Msa1148930 | 0.825120 | 5.575142e-54 | -8.615850e-47 |
| Msa0171060 | Msa1281370 | 0.811593 | 6.478141e-51 | -8.615850e-47 |
| Msa0171060 | Msa1320530 | 0.808031 | 3.782417e-50 | -8.615850e-47 |
| Msa0171060 | Msa1361990 | 0.832667 | 8.294948e-56 | -8.615850e-47 |
| Msa0171060 | Msa1395050 | 0.818140 | 2.289809e-52 | -8.615850e-47 |
| Msa0171060 | Msa1458790 | 0.814358 | 1.604476e-51 | -8.615850e-47 |
| Msa0171060 | Msa1462780 | 0.803281 | 3.757774e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171060 | MtrunA17_Chr1g0188981 | 95.789 | 190 | 7 | 1 | 1 | 190 | 1 | 189 | 1.27e-131 | 367 |
| Msa0171060 | MtrunA17_Chr6g0458331 | 40.351 | 114 | 65 | 2 | 28 | 141 | 36 | 146 | 9.27e-26 | 97.4 |
| Msa0171060 | MtrunA17_Chr4g0062341 | 34.132 | 167 | 91 | 7 | 26 | 187 | 29 | 181 | 1.67e-24 | 94.7 |
| Msa0171060 | MtrunA17_Chr4g0062311 | 34.132 | 167 | 91 | 7 | 26 | 187 | 29 | 181 | 1.67e-24 | 94.7 |
| Msa0171060 | MtrunA17_Chr1g0205701 | 34.177 | 158 | 84 | 3 | 9 | 152 | 8 | 159 | 5.62e-23 | 90.9 |
| Msa0171060 | MtrunA17_Chr4g0039721 | 31.902 | 163 | 92 | 5 | 26 | 184 | 29 | 176 | 3.87e-22 | 88.6 |
| Msa0171060 | MtrunA17_Chr1g0150131 | 38.776 | 98 | 59 | 1 | 32 | 129 | 29 | 125 | 1.77e-21 | 86.7 |
| Msa0171060 | MtrunA17_Chr2g0331181 | 32.895 | 152 | 92 | 3 | 6 | 152 | 7 | 153 | 1.87e-20 | 84.3 |
| Msa0171060 | MtrunA17_Chr3g0136871 | 33.333 | 162 | 94 | 6 | 32 | 191 | 31 | 180 | 1.13e-19 | 82.0 |
| Msa0171060 | MtrunA17_Chr5g0394321 | 32.099 | 162 | 95 | 4 | 11 | 171 | 7 | 154 | 2.43e-19 | 81.3 |
| Msa0171060 | MtrunA17_Chr2g0324721 | 32.886 | 149 | 92 | 3 | 26 | 174 | 24 | 164 | 4.60e-19 | 80.9 |
| Msa0171060 | MtrunA17_Chr4g0040291 | 35.200 | 125 | 76 | 3 | 28 | 150 | 24 | 145 | 7.20e-19 | 80.1 |
| Msa0171060 | MtrunA17_Chr4g0041811 | 35.514 | 107 | 68 | 1 | 23 | 129 | 26 | 131 | 1.14e-18 | 80.1 |
| Msa0171060 | MtrunA17_Chr2g0324711 | 35.246 | 122 | 73 | 2 | 8 | 129 | 7 | 122 | 1.42e-18 | 82.0 |
| Msa0171060 | MtrunA17_Chr2g0319611 | 36.111 | 108 | 68 | 1 | 23 | 129 | 20 | 127 | 2.26e-17 | 77.4 |
| Msa0171060 | MtrunA17_Chr8g0385041 | 38.655 | 119 | 68 | 3 | 27 | 145 | 23 | 136 | 6.48e-17 | 77.0 |
| Msa0171060 | MtrunA17_Chr8g0360371 | 28.689 | 122 | 84 | 1 | 8 | 129 | 3 | 121 | 9.49e-17 | 76.3 |
| Msa0171060 | MtrunA17_Chr2g0323021 | 32.836 | 134 | 75 | 5 | 32 | 156 | 29 | 156 | 3.99e-16 | 73.6 |
| Msa0171060 | MtrunA17_Chr8g0385031 | 33.051 | 118 | 76 | 2 | 13 | 129 | 7 | 122 | 2.25e-15 | 72.4 |
| Msa0171060 | MtrunA17_Chr2g0317231 | 32.759 | 116 | 69 | 4 | 26 | 138 | 22 | 131 | 1.13e-14 | 71.6 |
| Msa0171060 | MtrunA17_Chr6g0481491 | 28.226 | 124 | 82 | 3 | 7 | 129 | 5 | 122 | 2.85e-14 | 68.2 |
| Msa0171060 | MtrunA17_Chr4g0064041 | 30.345 | 145 | 84 | 4 | 13 | 152 | 8 | 140 | 7.85e-14 | 68.6 |
| Msa0171060 | MtrunA17_Chr4g0064041 | 32.673 | 101 | 67 | 1 | 29 | 129 | 191 | 290 | 1.00e-12 | 65.5 |
| Msa0171060 | MtrunA17_Chr8g0385021 | 33.051 | 118 | 76 | 2 | 13 | 129 | 7 | 122 | 9.78e-14 | 67.8 |
| Msa0171060 | MtrunA17_Chr8g0387804 | 33.333 | 99 | 64 | 1 | 31 | 129 | 31 | 127 | 1.35e-13 | 64.7 |
| Msa0171060 | MtrunA17_Chr1g0196801 | 31.915 | 141 | 85 | 5 | 29 | 169 | 23 | 152 | 1.95e-13 | 65.5 |
| Msa0171060 | MtrunA17_Chr4g0073901 | 29.126 | 103 | 71 | 2 | 28 | 129 | 28 | 129 | 8.37e-13 | 63.9 |
| Msa0171060 | MtrunA17_Chr6g0459441 | 33.028 | 109 | 66 | 4 | 23 | 130 | 20 | 122 | 9.45e-12 | 60.8 |
| Msa0171060 | MtrunA17_Chr8g0335571 | 32.381 | 105 | 65 | 2 | 25 | 129 | 20 | 118 | 1.41e-11 | 60.8 |
| Msa0171060 | MtrunA17_Chr8g0335531 | 32.075 | 106 | 66 | 2 | 24 | 129 | 19 | 118 | 3.26e-11 | 59.7 |
| Msa0171060 | MtrunA17_Chr1g0185541 | 37.879 | 66 | 41 | 0 | 64 | 129 | 5 | 70 | 4.70e-11 | 56.6 |
| Msa0171060 | MtrunA17_Chr3g0132411 | 31.683 | 101 | 63 | 2 | 29 | 129 | 65 | 159 | 6.06e-11 | 58.5 |
| Msa0171060 | MtrunA17_Chr1g0211101 | 27.344 | 128 | 87 | 2 | 8 | 134 | 12 | 134 | 6.62e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171060 | AT1G64640.1 | 55.280 | 161 | 60 | 4 | 9 | 162 | 6 | 161 | 5.94e-54 | 170 |
| Msa0171060 | AT3G20570.1 | 38.793 | 116 | 69 | 1 | 14 | 129 | 15 | 128 | 9.10e-27 | 101 |
| Msa0171060 | AT1G79800.1 | 38.843 | 121 | 71 | 2 | 28 | 147 | 33 | 151 | 3.48e-22 | 89.4 |
| Msa0171060 | AT1G48940.1 | 38.318 | 107 | 63 | 2 | 24 | 129 | 21 | 125 | 6.27e-22 | 88.2 |
| Msa0171060 | AT3G18590.1 | 37.864 | 103 | 61 | 2 | 28 | 129 | 26 | 126 | 1.11e-20 | 85.1 |
| Msa0171060 | AT4G31840.1 | 38.400 | 125 | 72 | 3 | 32 | 153 | 31 | 153 | 1.47e-20 | 84.7 |
| Msa0171060 | AT2G25060.1 | 39.000 | 100 | 57 | 2 | 30 | 129 | 36 | 131 | 1.56e-20 | 84.7 |
| Msa0171060 | AT5G57920.1 | 37.755 | 98 | 60 | 1 | 32 | 129 | 27 | 123 | 2.65e-20 | 84.0 |
| Msa0171060 | AT5G57920.2 | 37.755 | 98 | 60 | 1 | 32 | 129 | 26 | 122 | 3.96e-20 | 83.6 |
| Msa0171060 | AT5G53870.2 | 35.152 | 165 | 95 | 6 | 8 | 169 | 12 | 167 | 5.07e-20 | 86.3 |
| Msa0171060 | AT5G53870.1 | 35.152 | 165 | 95 | 6 | 8 | 169 | 12 | 167 | 6.41e-20 | 86.3 |
| Msa0171060 | AT5G57920.3 | 37.755 | 98 | 60 | 1 | 32 | 129 | 59 | 155 | 9.14e-20 | 83.6 |
| Msa0171060 | AT4G27520.1 | 32.432 | 148 | 95 | 3 | 12 | 158 | 14 | 157 | 3.90e-19 | 84.0 |
| Msa0171060 | AT4G28365.1 | 32.867 | 143 | 87 | 5 | 27 | 166 | 27 | 163 | 5.72e-19 | 80.9 |
| Msa0171060 | AT5G14345.1 | 32.061 | 131 | 83 | 2 | 14 | 144 | 5 | 129 | 7.48e-19 | 79.3 |
| Msa0171060 | AT4G32490.1 | 33.333 | 108 | 69 | 1 | 27 | 134 | 29 | 133 | 2.01e-18 | 80.1 |
| Msa0171060 | AT5G25090.1 | 31.967 | 122 | 81 | 2 | 9 | 129 | 6 | 126 | 2.73e-18 | 79.0 |
| Msa0171060 | AT2G32300.2 | 28.049 | 164 | 110 | 2 | 1 | 164 | 31 | 186 | 5.41e-18 | 80.1 |
| Msa0171060 | AT2G32300.1 | 28.049 | 164 | 110 | 2 | 1 | 164 | 1 | 156 | 5.86e-18 | 79.3 |
| Msa0171060 | AT4G30590.1 | 35.714 | 98 | 62 | 1 | 32 | 129 | 32 | 128 | 1.92e-17 | 76.6 |
| Msa0171060 | AT2G23990.1 | 37.374 | 99 | 60 | 2 | 32 | 129 | 31 | 128 | 2.69e-17 | 76.6 |
| Msa0171060 | AT5G26330.1 | 34.014 | 147 | 74 | 3 | 29 | 155 | 24 | 167 | 8.35e-17 | 75.1 |
| Msa0171060 | AT2G31050.1 | 32.857 | 140 | 87 | 4 | 5 | 142 | 6 | 140 | 1.11e-12 | 64.3 |
| Msa0171060 | AT2G23990.2 | 30.508 | 118 | 61 | 3 | 32 | 129 | 31 | 147 | 1.24e-12 | 64.3 |
| Msa0171060 | AT5G07475.1 | 30.400 | 125 | 72 | 4 | 31 | 155 | 32 | 141 | 1.91e-12 | 63.5 |
| Msa0171060 | AT1G45063.2 | 33.333 | 108 | 68 | 2 | 29 | 135 | 149 | 253 | 2.18e-12 | 64.3 |
| Msa0171060 | AT1G45063.1 | 33.333 | 108 | 68 | 2 | 29 | 135 | 149 | 253 | 2.77e-12 | 64.7 |
| Msa0171060 | AT2G26720.1 | 27.778 | 144 | 98 | 2 | 1 | 142 | 1 | 140 | 8.84e-12 | 62.0 |
| Msa0171060 | AT3G60270.1 | 31.132 | 106 | 67 | 2 | 24 | 129 | 21 | 120 | 4.32e-11 | 59.7 |
| Msa0171060 | AT3G17675.1 | 30.303 | 99 | 64 | 1 | 31 | 129 | 34 | 127 | 4.90e-11 | 58.2 |
Find 49 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGTGAAGTTGTGAAATT+TGG | 0.223732 | 1_4:+55547421 | None:intergenic |
| CATATATCTGTTGGAGGAAT+TGG | 0.263666 | 1_4:-55547078 | Msa0171060:CDS |
| CCATTGTTCATAAACAATAT+TGG | 0.281321 | 1_4:+55547186 | None:intergenic |
| AAAACACTTTGGTTTGGATT+TGG | 0.318460 | 1_4:+55547522 | None:intergenic |
| CCCTCTTCACAAACAGTGTT+TGG | 0.328717 | 1_4:-55547003 | Msa0171060:CDS |
| TACTTCACAAGTGGAGAAAA+TGG | 0.332320 | 1_4:-55547126 | Msa0171060:CDS |
| ATCTGGCGATTGGCTGGAAT+TGG | 0.339184 | 1_4:+55547663 | None:intergenic |
| ATCCACAAGTCTATGCTAAA+TGG | 0.353275 | 1_4:-55547445 | Msa0171060:CDS |
| CAGTCATAACAACTGGTTCT+TGG | 0.354742 | 1_4:-55547570 | Msa0171060:CDS |
| GTTGTTATGACTGGCCATTT+TGG | 0.356548 | 1_4:+55547580 | None:intergenic |
| GAAAATAATAGAAACCAAAA+TGG | 0.373724 | 1_4:-55547594 | Msa0171060:exon |
| ACACATGAAAAGTTGAAGTT+AGG | 0.397508 | 1_4:+55546941 | None:intergenic |
| TTAGATCTCCAACTTTGAAT+TGG | 0.398002 | 1_4:+55547495 | None:intergenic |
| GGTAGCAAAACACTTTGGTT+TGG | 0.401653 | 1_4:+55547516 | None:intergenic |
| AGTTGGAGATCTAAATGCTT+GGG | 0.404972 | 1_4:-55547486 | Msa0171060:CDS |
| TCAATCTGTAATTCTTTATG+TGG | 0.412274 | 1_4:-55546788 | Msa0171060:three_prime_UTR |
| CCAAACACTGTTTGTGAAGA+GGG | 0.433432 | 1_4:+55547003 | None:intergenic |
| TTTGATGAAGAAGGAGCTAC+TGG | 0.443782 | 1_4:+55546973 | None:intergenic |
| TTGCAAATCTGGCGATTGGC+TGG | 0.450232 | 1_4:+55547657 | None:intergenic |
| CAAAAGATTCATATATCTGT+TGG | 0.454335 | 1_4:-55547087 | Msa0171060:CDS |
| TGAGGTGAATTTGATGAAGA+AGG | 0.457613 | 1_4:+55546964 | None:intergenic |
| AAATTTCACAACTTCACCCT+TGG | 0.467456 | 1_4:-55547419 | Msa0171060:CDS |
| TATAGTACTTGAAATTGAAA+GGG | 0.476703 | 1_4:+55547694 | None:intergenic |
| AAATGGCCAGTCATAACAAC+TGG | 0.486950 | 1_4:-55547577 | Msa0171060:CDS |
| ATATAGTACTTGAAATTGAA+AGG | 0.492057 | 1_4:+55547693 | None:intergenic |
| TGGCTTGCAAATCTGGCGAT+TGG | 0.499681 | 1_4:+55547653 | None:intergenic |
| ATCAATGAATCTTGACTTGG+TGG | 0.501009 | 1_4:+55547252 | None:intergenic |
| TGTGAAGAGGGTGCAGATGC+AGG | 0.517498 | 1_4:+55547015 | None:intergenic |
| AACAAAGTATTACATAATCA+AGG | 0.522050 | 1_4:+55546740 | None:intergenic |
| GACCATTTAGCATAGACTTG+TGG | 0.528971 | 1_4:+55547443 | None:intergenic |
| AATGTTGATGCTGAAGCTAA+TGG | 0.532427 | 1_4:-55547054 | Msa0171060:CDS |
| GAATTGGTAGCAAAACACTT+TGG | 0.533380 | 1_4:+55547511 | None:intergenic |
| CCAATATTGTTTATGAACAA+TGG | 0.534060 | 1_4:-55547186 | Msa0171060:CDS |
| GATGCAGGCAATGAAGAACT+TGG | 0.536171 | 1_4:+55547030 | None:intergenic |
| AAGTTGGAGATCTAAATGCT+TGG | 0.539050 | 1_4:-55547487 | Msa0171060:CDS |
| TCCAAACACTGTTTGTGAAG+AGG | 0.548927 | 1_4:+55547002 | None:intergenic |
| AAGATTCATATATCTGTTGG+AGG | 0.558686 | 1_4:-55547084 | Msa0171060:CDS |
| GACTTGTGGATTTGCTGAGG+TGG | 0.563923 | 1_4:+55547457 | None:intergenic |
| CAAGAACCAGTTGTTATGAC+TGG | 0.565931 | 1_4:+55547571 | None:intergenic |
| GGTGATTTCTACTTCACAAG+TGG | 0.570982 | 1_4:-55547135 | Msa0171060:CDS |
| ACTTACAAAGTGAGTCTCCA+AGG | 0.579525 | 1_4:+55547402 | None:intergenic |
| TGAATCAATGAATCTTGACT+TGG | 0.587776 | 1_4:+55547249 | None:intergenic |
| ACTTGTGGATTTGCTGAGGT+GGG | 0.610232 | 1_4:+55547458 | None:intergenic |
| GTTGGAGATCTAAATGCTTG+GGG | 0.615224 | 1_4:-55547485 | Msa0171060:CDS |
| TTGTTTAACATAACATCACA+TGG | 0.618399 | 1_4:-55547156 | Msa0171060:CDS |
| ATAGTACTTGAAATTGAAAG+GGG | 0.641750 | 1_4:+55547695 | None:intergenic |
| TGAAAAGTTGAAGTTAGGTG+AGG | 0.664125 | 1_4:+55546946 | None:intergenic |
| ATAGACTTGTGGATTTGCTG+AGG | 0.672234 | 1_4:+55547454 | None:intergenic |
| CTTACAAAGTGAGTCTCCAA+GGG | 0.672775 | 1_4:+55547403 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACATTAAAGTAAAAAAT+AGG | + | chr1_4:55547506-55547525 | None:intergenic | 10.0% |
| !! | TTTACATTAAAGTAAAAAAT+AGG | + | chr1_4:55547506-55547525 | None:intergenic | 10.0% |
| !!! | TCTATTATTTTCTTAGATTT+AGG | + | chr1_4:55546795-55546814 | None:intergenic | 15.0% |
| !! | AAAACAAAATAAAAACAGTA+GGG | + | chr1_4:55547708-55547727 | None:intergenic | 15.0% |
| !! | AAAAACAAAATAAAAACAGT+AGG | + | chr1_4:55547709-55547728 | None:intergenic | 15.0% |
| !!! | TATTTCATTTCAAATTTTTG+GGG | + | chr1_4:55547734-55547753 | None:intergenic | 15.0% |
| !!! | GTATTTCATTTCAAATTTTT+GGG | + | chr1_4:55547735-55547754 | None:intergenic | 15.0% |
| !!! | AGTATTTCATTTCAAATTTT+TGG | + | chr1_4:55547736-55547755 | None:intergenic | 15.0% |
| !!! | TCTATTATTTTCTTAGATTT+AGG | + | chr1_4:55546795-55546814 | None:intergenic | 15.0% |
| !! | AAAACAAAATAAAAACAGTA+GGG | + | chr1_4:55547708-55547727 | None:intergenic | 15.0% |
| !! | AAAAACAAAATAAAAACAGT+AGG | + | chr1_4:55547709-55547728 | None:intergenic | 15.0% |
| !!! | TATTTCATTTCAAATTTTTG+GGG | + | chr1_4:55547734-55547753 | None:intergenic | 15.0% |
| !!! | GTATTTCATTTCAAATTTTT+GGG | + | chr1_4:55547735-55547754 | None:intergenic | 15.0% |
| !!! | AGTATTTCATTTCAAATTTT+TGG | + | chr1_4:55547736-55547755 | None:intergenic | 15.0% |
| !! | TATAGTACTTGAAATTGAAA+GGG | + | chr1_4:55546706-55546725 | None:intergenic | 20.0% |
| !! | ATATAGTACTTGAAATTGAA+AGG | + | chr1_4:55546707-55546726 | None:intergenic | 20.0% |
| !! | GAAAATAATAGAAACCAAAA+TGG | - | chr1_4:55546803-55546822 | Msa0171060:three_prime_UTR | 20.0% |
| !! | GTTGGAATATATTGTATATA+TGG | + | chr1_4:55547021-55547040 | None:intergenic | 20.0% |
| !! | TAAAATGAAATTAAGGAAGT+TGG | + | chr1_4:55547039-55547058 | None:intergenic | 20.0% |
| !! | GTAACACTAAAATGAAATTA+AGG | + | chr1_4:55547046-55547065 | None:intergenic | 20.0% |
| !!! | TATGAATCTTTTGATTCTTT+TGG | + | chr1_4:55547303-55547322 | None:intergenic | 20.0% |
| !!! | ACTTTTCATGTGTTTATTAT+TGG | - | chr1_4:55547466-55547485 | Msa0171060:CDS | 20.0% |
| !!! | AACAAAGTATTACATAATCA+AGG | + | chr1_4:55547660-55547679 | None:intergenic | 20.0% |
| !! | TATAGTACTTGAAATTGAAA+GGG | + | chr1_4:55546706-55546725 | None:intergenic | 20.0% |
| !! | ATATAGTACTTGAAATTGAA+AGG | + | chr1_4:55546707-55546726 | None:intergenic | 20.0% |
| !! | GAAAATAATAGAAACCAAAA+TGG | - | chr1_4:55546803-55546822 | Msa0171060:three_prime_UTR | 20.0% |
| !! | GTTGGAATATATTGTATATA+TGG | + | chr1_4:55547021-55547040 | None:intergenic | 20.0% |
| !! | TAAAATGAAATTAAGGAAGT+TGG | + | chr1_4:55547039-55547058 | None:intergenic | 20.0% |
| !! | GTAACACTAAAATGAAATTA+AGG | + | chr1_4:55547046-55547065 | None:intergenic | 20.0% |
| !!! | TATGAATCTTTTGATTCTTT+TGG | + | chr1_4:55547303-55547322 | None:intergenic | 20.0% |
| !!! | ACTTTTCATGTGTTTATTAT+TGG | - | chr1_4:55547466-55547485 | Msa0171060:CDS | 20.0% |
| !!! | AACAAAGTATTACATAATCA+AGG | + | chr1_4:55547660-55547679 | None:intergenic | 20.0% |
| ! | ATAGTACTTGAAATTGAAAG+GGG | + | chr1_4:55546705-55546724 | None:intergenic | 25.0% |
| ! | TAGTGTTACAAAACTCAAAA+AGG | - | chr1_4:55547057-55547076 | Msa0171060:CDS | 25.0% |
| ! | AGTGTTACAAAACTCAAAAA+GGG | - | chr1_4:55547058-55547077 | Msa0171060:CDS | 25.0% |
| ! | CCATTGTTCATAAACAATAT+TGG | + | chr1_4:55547214-55547233 | None:intergenic | 25.0% |
| ! | CCAATATTGTTTATGAACAA+TGG | - | chr1_4:55547211-55547230 | Msa0171060:CDS | 25.0% |
| ! | TTGTTTAACATAACATCACA+TGG | - | chr1_4:55547241-55547260 | Msa0171060:CDS | 25.0% |
| ! | CAAAAGATTCATATATCTGT+TGG | - | chr1_4:55547310-55547329 | Msa0171060:intron | 25.0% |
| ! | TCAATCTGTAATTCTTTATG+TGG | - | chr1_4:55547609-55547628 | Msa0171060:five_prime_UTR | 25.0% |
| ! | ATAGTACTTGAAATTGAAAG+GGG | + | chr1_4:55546705-55546724 | None:intergenic | 25.0% |
| ! | TAGTGTTACAAAACTCAAAA+AGG | - | chr1_4:55547057-55547076 | Msa0171060:CDS | 25.0% |
| ! | AGTGTTACAAAACTCAAAAA+GGG | - | chr1_4:55547058-55547077 | Msa0171060:CDS | 25.0% |
| ! | CCATTGTTCATAAACAATAT+TGG | + | chr1_4:55547214-55547233 | None:intergenic | 25.0% |
| ! | CCAATATTGTTTATGAACAA+TGG | - | chr1_4:55547211-55547230 | Msa0171060:CDS | 25.0% |
| ! | TTGTTTAACATAACATCACA+TGG | - | chr1_4:55547241-55547260 | Msa0171060:CDS | 25.0% |
| ! | CAAAAGATTCATATATCTGT+TGG | - | chr1_4:55547310-55547329 | Msa0171060:intron | 25.0% |
| ! | TCAATCTGTAATTCTTTATG+TGG | - | chr1_4:55547609-55547628 | Msa0171060:five_prime_UTR | 25.0% |
| !!! | TTTTTATTGGCTTGCAAATC+TGG | + | chr1_4:55546754-55546773 | None:intergenic | 30.0% |
| !! | AAAACACTTTGGTTTGGATT+TGG | + | chr1_4:55546878-55546897 | None:intergenic | 30.0% |
| ! | TTTTGCTACCAATTCAAAGT+TGG | - | chr1_4:55546894-55546913 | Msa0171060:exon | 30.0% |
| TTAGATCTCCAACTTTGAAT+TGG | + | chr1_4:55546905-55546924 | None:intergenic | 30.0% | |
| TGAATCAATGAATCTTGACT+TGG | + | chr1_4:55547151-55547170 | None:intergenic | 30.0% | |
| AAGATTCATATATCTGTTGG+AGG | - | chr1_4:55547313-55547332 | Msa0171060:intron | 30.0% | |
| ACACATGAAAAGTTGAAGTT+AGG | + | chr1_4:55547459-55547478 | None:intergenic | 30.0% | |
| !!! | TTTTTATTGGCTTGCAAATC+TGG | + | chr1_4:55546754-55546773 | None:intergenic | 30.0% |
| !! | AAAACACTTTGGTTTGGATT+TGG | + | chr1_4:55546878-55546897 | None:intergenic | 30.0% |
| ! | TTTTGCTACCAATTCAAAGT+TGG | - | chr1_4:55546894-55546913 | Msa0171060:exon | 30.0% |
| TTAGATCTCCAACTTTGAAT+TGG | + | chr1_4:55546905-55546924 | None:intergenic | 30.0% | |
| TGAATCAATGAATCTTGACT+TGG | + | chr1_4:55547151-55547170 | None:intergenic | 30.0% | |
| AAGATTCATATATCTGTTGG+AGG | - | chr1_4:55547313-55547332 | Msa0171060:intron | 30.0% | |
| ACACATGAAAAGTTGAAGTT+AGG | + | chr1_4:55547459-55547478 | None:intergenic | 30.0% | |
| CCAATAAAAAGTCCTTGTTG+CGG | - | chr1_4:55546764-55546783 | Msa0171060:three_prime_UTR | 35.0% | |
| CAATAAAAAGTCCTTGTTGC+GGG | - | chr1_4:55546765-55546784 | Msa0171060:three_prime_UTR | 35.0% | |
| AATAAAAAGTCCTTGTTGCG+GGG | - | chr1_4:55546766-55546785 | Msa0171060:three_prime_UTR | 35.0% | |
| ! | GAATTGGTAGCAAAACACTT+TGG | + | chr1_4:55546889-55546908 | None:intergenic | 35.0% |
| AAGTTGGAGATCTAAATGCT+TGG | - | chr1_4:55546910-55546929 | Msa0171060:CDS | 35.0% | |
| AGTTGGAGATCTAAATGCTT+GGG | - | chr1_4:55546911-55546930 | Msa0171060:CDS | 35.0% | |
| ATCCACAAGTCTATGCTAAA+TGG | - | chr1_4:55546952-55546971 | Msa0171060:CDS | 35.0% | |
| AAGGGTGAAGTTGTGAAATT+TGG | + | chr1_4:55546979-55546998 | None:intergenic | 35.0% | |
| AAATTTCACAACTTCACCCT+TGG | - | chr1_4:55546978-55546997 | Msa0171060:CDS | 35.0% | |
| !! | ATCAATGAATCTTGACTTGG+TGG | + | chr1_4:55547148-55547167 | None:intergenic | 35.0% |
| TACTTCACAAGTGGAGAAAA+TGG | - | chr1_4:55547271-55547290 | Msa0171060:intron | 35.0% | |
| CATATATCTGTTGGAGGAAT+TGG | - | chr1_4:55547319-55547338 | Msa0171060:intron | 35.0% | |
| AATGTTGATGCTGAAGCTAA+TGG | - | chr1_4:55547343-55547362 | Msa0171060:intron | 35.0% | |
| TGAGGTGAATTTGATGAAGA+AGG | + | chr1_4:55547436-55547455 | None:intergenic | 35.0% | |
| TGAAAAGTTGAAGTTAGGTG+AGG | + | chr1_4:55547454-55547473 | None:intergenic | 35.0% | |
| CCAATAAAAAGTCCTTGTTG+CGG | - | chr1_4:55546764-55546783 | Msa0171060:three_prime_UTR | 35.0% | |
| CAATAAAAAGTCCTTGTTGC+GGG | - | chr1_4:55546765-55546784 | Msa0171060:three_prime_UTR | 35.0% | |
| AATAAAAAGTCCTTGTTGCG+GGG | - | chr1_4:55546766-55546785 | Msa0171060:three_prime_UTR | 35.0% | |
| ! | GAATTGGTAGCAAAACACTT+TGG | + | chr1_4:55546889-55546908 | None:intergenic | 35.0% |
| AAGTTGGAGATCTAAATGCT+TGG | - | chr1_4:55546910-55546929 | Msa0171060:CDS | 35.0% | |
| AGTTGGAGATCTAAATGCTT+GGG | - | chr1_4:55546911-55546930 | Msa0171060:CDS | 35.0% | |
| ATCCACAAGTCTATGCTAAA+TGG | - | chr1_4:55546952-55546971 | Msa0171060:CDS | 35.0% | |
| AAGGGTGAAGTTGTGAAATT+TGG | + | chr1_4:55546979-55546998 | None:intergenic | 35.0% | |
| AAATTTCACAACTTCACCCT+TGG | - | chr1_4:55546978-55546997 | Msa0171060:CDS | 35.0% | |
| !! | ATCAATGAATCTTGACTTGG+TGG | + | chr1_4:55547148-55547167 | None:intergenic | 35.0% |
| TACTTCACAAGTGGAGAAAA+TGG | - | chr1_4:55547271-55547290 | Msa0171060:intron | 35.0% | |
| CATATATCTGTTGGAGGAAT+TGG | - | chr1_4:55547319-55547338 | Msa0171060:intron | 35.0% | |
| AATGTTGATGCTGAAGCTAA+TGG | - | chr1_4:55547343-55547362 | Msa0171060:intron | 35.0% | |
| TGAGGTGAATTTGATGAAGA+AGG | + | chr1_4:55547436-55547455 | None:intergenic | 35.0% | |
| TGAAAAGTTGAAGTTAGGTG+AGG | + | chr1_4:55547454-55547473 | None:intergenic | 35.0% | |
| ! | CCGCAACAAGGACTTTTTAT+TGG | + | chr1_4:55546767-55546786 | None:intergenic | 40.0% |
| ATAAAAAGTCCTTGTTGCGG+GGG | - | chr1_4:55546767-55546786 | Msa0171060:three_prime_UTR | 40.0% | |
| !! | GTTGTTATGACTGGCCATTT+TGG | + | chr1_4:55546820-55546839 | None:intergenic | 40.0% |
| AAATGGCCAGTCATAACAAC+TGG | - | chr1_4:55546820-55546839 | Msa0171060:three_prime_UTR | 40.0% | |
| CAAGAACCAGTTGTTATGAC+TGG | + | chr1_4:55546829-55546848 | None:intergenic | 40.0% | |
| ! | CAGTCATAACAACTGGTTCT+TGG | - | chr1_4:55546827-55546846 | Msa0171060:three_prime_UTR | 40.0% |
| GGTAGCAAAACACTTTGGTT+TGG | + | chr1_4:55546884-55546903 | None:intergenic | 40.0% | |
| GTTGGAGATCTAAATGCTTG+GGG | - | chr1_4:55546912-55546931 | Msa0171060:CDS | 40.0% | |
| !! | ATAGACTTGTGGATTTGCTG+AGG | + | chr1_4:55546946-55546965 | None:intergenic | 40.0% |
| GACCATTTAGCATAGACTTG+TGG | + | chr1_4:55546957-55546976 | None:intergenic | 40.0% | |
| CTTACAAAGTGAGTCTCCAA+GGG | + | chr1_4:55546997-55547016 | None:intergenic | 40.0% | |
| ACTTACAAAGTGAGTCTCCA+AGG | + | chr1_4:55546998-55547017 | None:intergenic | 40.0% | |
| GGTGATTTCTACTTCACAAG+TGG | - | chr1_4:55547262-55547281 | Msa0171060:CDS | 40.0% | |
| CCAAACACTGTTTGTGAAGA+GGG | + | chr1_4:55547397-55547416 | None:intergenic | 40.0% | |
| TCCAAACACTGTTTGTGAAG+AGG | + | chr1_4:55547398-55547417 | None:intergenic | 40.0% | |
| TTTGATGAAGAAGGAGCTAC+TGG | + | chr1_4:55547427-55547446 | None:intergenic | 40.0% | |
| ! | CCGCAACAAGGACTTTTTAT+TGG | + | chr1_4:55546767-55546786 | None:intergenic | 40.0% |
| ATAAAAAGTCCTTGTTGCGG+GGG | - | chr1_4:55546767-55546786 | Msa0171060:three_prime_UTR | 40.0% | |
| !! | GTTGTTATGACTGGCCATTT+TGG | + | chr1_4:55546820-55546839 | None:intergenic | 40.0% |
| AAATGGCCAGTCATAACAAC+TGG | - | chr1_4:55546820-55546839 | Msa0171060:three_prime_UTR | 40.0% | |
| CAAGAACCAGTTGTTATGAC+TGG | + | chr1_4:55546829-55546848 | None:intergenic | 40.0% | |
| ! | CAGTCATAACAACTGGTTCT+TGG | - | chr1_4:55546827-55546846 | Msa0171060:three_prime_UTR | 40.0% |
| GGTAGCAAAACACTTTGGTT+TGG | + | chr1_4:55546884-55546903 | None:intergenic | 40.0% | |
| GTTGGAGATCTAAATGCTTG+GGG | - | chr1_4:55546912-55546931 | Msa0171060:CDS | 40.0% | |
| !! | ATAGACTTGTGGATTTGCTG+AGG | + | chr1_4:55546946-55546965 | None:intergenic | 40.0% |
| GACCATTTAGCATAGACTTG+TGG | + | chr1_4:55546957-55546976 | None:intergenic | 40.0% | |
| CTTACAAAGTGAGTCTCCAA+GGG | + | chr1_4:55546997-55547016 | None:intergenic | 40.0% | |
| ACTTACAAAGTGAGTCTCCA+AGG | + | chr1_4:55546998-55547017 | None:intergenic | 40.0% | |
| GGTGATTTCTACTTCACAAG+TGG | - | chr1_4:55547262-55547281 | Msa0171060:CDS | 40.0% | |
| CCAAACACTGTTTGTGAAGA+GGG | + | chr1_4:55547397-55547416 | None:intergenic | 40.0% | |
| TCCAAACACTGTTTGTGAAG+AGG | + | chr1_4:55547398-55547417 | None:intergenic | 40.0% | |
| TTTGATGAAGAAGGAGCTAC+TGG | + | chr1_4:55547427-55547446 | None:intergenic | 40.0% | |
| TAAAAAGTCCTTGTTGCGGG+GGG | - | chr1_4:55546768-55546787 | Msa0171060:three_prime_UTR | 45.0% | |
| !! | ACTTGTGGATTTGCTGAGGT+GGG | + | chr1_4:55546942-55546961 | None:intergenic | 45.0% |
| GATGCAGGCAATGAAGAACT+TGG | + | chr1_4:55547370-55547389 | None:intergenic | 45.0% | |
| CCCTCTTCACAAACAGTGTT+TGG | - | chr1_4:55547394-55547413 | Msa0171060:intron | 45.0% | |
| TAAAAAGTCCTTGTTGCGGG+GGG | - | chr1_4:55546768-55546787 | Msa0171060:three_prime_UTR | 45.0% | |
| !! | ACTTGTGGATTTGCTGAGGT+GGG | + | chr1_4:55546942-55546961 | None:intergenic | 45.0% |
| GATGCAGGCAATGAAGAACT+TGG | + | chr1_4:55547370-55547389 | None:intergenic | 45.0% | |
| CCCTCTTCACAAACAGTGTT+TGG | - | chr1_4:55547394-55547413 | Msa0171060:intron | 45.0% | |
| ! | ATCTGGCGATTGGCTGGAAT+TGG | + | chr1_4:55546737-55546756 | None:intergenic | 50.0% |
| TTGCAAATCTGGCGATTGGC+TGG | + | chr1_4:55546743-55546762 | None:intergenic | 50.0% | |
| ! | TGGCTTGCAAATCTGGCGAT+TGG | + | chr1_4:55546747-55546766 | None:intergenic | 50.0% |
| !! | GACTTGTGGATTTGCTGAGG+TGG | + | chr1_4:55546943-55546962 | None:intergenic | 50.0% |
| ! | ATCTGGCGATTGGCTGGAAT+TGG | + | chr1_4:55546737-55546756 | None:intergenic | 50.0% |
| TTGCAAATCTGGCGATTGGC+TGG | + | chr1_4:55546743-55546762 | None:intergenic | 50.0% | |
| ! | TGGCTTGCAAATCTGGCGAT+TGG | + | chr1_4:55546747-55546766 | None:intergenic | 50.0% |
| !! | GACTTGTGGATTTGCTGAGG+TGG | + | chr1_4:55546943-55546962 | None:intergenic | 50.0% |
| ! | ATTTAGGACCCCCCGCAACA+AGG | + | chr1_4:55546779-55546798 | None:intergenic | 55.0% |
| ! | TGTGAAGAGGGTGCAGATGC+AGG | + | chr1_4:55547385-55547404 | None:intergenic | 55.0% |
| ! | ATTTAGGACCCCCCGCAACA+AGG | + | chr1_4:55546779-55546798 | None:intergenic | 55.0% |
| ! | TGTGAAGAGGGTGCAGATGC+AGG | + | chr1_4:55547385-55547404 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 55546662 | 55547757 | 55546662 | ID=Msa0171060;Name=Msa0171060 |
| chr1_4 | mRNA | 55546662 | 55547757 | 55546662 | ID=Msa0171060-mRNA-1;Parent=Msa0171060;Name=Msa0171060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=160|1|1|1|1|1|2|238|191 |
| chr1_4 | exon | 55546662 | 55547285 | 55546662 | ID=Msa0171060-mRNA-1:exon:16631;Parent=Msa0171060-mRNA-1 |
| chr1_4 | exon | 55547408 | 55547757 | 55547408 | ID=Msa0171060-mRNA-1:exon:16630;Parent=Msa0171060-mRNA-1 |
| chr1_4 | five_prime_UTR | 55547598 | 55547757 | 55547598 | ID=Msa0171060-mRNA-1:five_prime_utr;Parent=Msa0171060-mRNA-1 |
| chr1_4 | CDS | 55547408 | 55547597 | 55547408 | ID=Msa0171060-mRNA-1:cds;Parent=Msa0171060-mRNA-1 |
| chr1_4 | CDS | 55546900 | 55547285 | 55546900 | ID=Msa0171060-mRNA-1:cds;Parent=Msa0171060-mRNA-1 |
| chr1_4 | three_prime_UTR | 55546662 | 55546899 | 55546662 | ID=Msa0171060-mRNA-1:three_prime_utr;Parent=Msa0171060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
