Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877530 | XP_013451443.1 | 100.000 | 249 | 0 | 0 | 1 | 249 | 1 | 249 | 0.0 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877530 | sp|O23715|PSA3_ARATH | 86.747 | 249 | 33 | 0 | 1 | 249 | 1 | 249 | 5.43e-167 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877530 | A0A072U8Q5 | 100.000 | 249 | 0 | 0 | 1 | 249 | 1 | 249 | 0.0 | 514 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047640 | Msa0877530 | 0.807485 | 4.939076e-50 | -8.615850e-47 |
| Msa0608270 | Msa0877530 | 0.805215 | 1.486833e-49 | -8.615850e-47 |
| Msa0648830 | Msa0877530 | 0.808920 | 2.442648e-50 | -8.615850e-47 |
| Msa0797930 | Msa0877530 | 0.845542 | 3.806670e-59 | -8.615850e-47 |
| Msa0835960 | Msa0877530 | 0.830425 | 2.958144e-55 | -8.615850e-47 |
| Msa0279850 | Msa0877530 | 0.805395 | 1.363116e-49 | -8.615850e-47 |
| Msa0544730 | Msa0877530 | 0.814966 | 1.176993e-51 | -8.615850e-47 |
| Msa0877530 | Msa1123350 | 0.816385 | 5.684108e-52 | -8.615850e-47 |
| Msa0877530 | Msa1374170 | 0.814414 | 1.559372e-51 | -8.615850e-47 |
| Msa0877530 | Msa1382670 | 0.809815 | 1.569946e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877530 | MtrunA17_Chr6g0459741 | 100.000 | 249 | 0 | 0 | 1 | 249 | 1 | 249 | 0.0 | 514 |
| Msa0877530 | MtrunA17_Chr0c02g0489661 | 36.612 | 183 | 116 | 0 | 8 | 190 | 6 | 188 | 3.63e-39 | 135 |
| Msa0877530 | MtrunA17_Chr1g0155371 | 40.838 | 191 | 108 | 3 | 8 | 196 | 6 | 193 | 9.27e-39 | 136 |
| Msa0877530 | MtrunA17_Chr1g0210811 | 34.783 | 207 | 120 | 2 | 6 | 203 | 6 | 206 | 3.48e-38 | 133 |
| Msa0877530 | MtrunA17_Chr7g0243311 | 35.071 | 211 | 135 | 2 | 8 | 216 | 5 | 215 | 7.45e-38 | 133 |
| Msa0877530 | MtrunA17_Chr5g0401801 | 37.500 | 192 | 117 | 3 | 8 | 197 | 5 | 195 | 3.17e-37 | 130 |
| Msa0877530 | MtrunA17_Chr8g0360781 | 36.932 | 176 | 109 | 2 | 5 | 178 | 6 | 181 | 2.00e-32 | 119 |
| Msa0877530 | MtrunA17_Chr2g0308541 | 35.227 | 176 | 112 | 2 | 5 | 178 | 6 | 181 | 2.37e-32 | 118 |
| Msa0877530 | MtrunA17_Chr8g0371571 | 35.260 | 173 | 110 | 1 | 8 | 178 | 4 | 176 | 1.26e-29 | 111 |
| Msa0877530 | MtrunA17_Chr2g0283841 | 35.260 | 173 | 110 | 1 | 8 | 178 | 4 | 176 | 3.88e-28 | 107 |
| Msa0877530 | MtrunA17_Chr6g0459771 | 88.462 | 52 | 6 | 0 | 176 | 227 | 22 | 73 | 2.37e-27 | 100 |
| Msa0877530 | MtrunA17_Chr4g0004521 | 33.540 | 161 | 99 | 4 | 38 | 196 | 34 | 188 | 3.92e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0877530 | AT2G27020.1 | 86.747 | 249 | 33 | 0 | 1 | 249 | 1 | 249 | 5.52e-168 | 464 |
| Msa0877530 | AT2G27020.2 | 86.747 | 249 | 33 | 0 | 1 | 249 | 103 | 351 | 1.27e-166 | 464 |
| Msa0877530 | AT1G47250.1 | 42.105 | 171 | 97 | 1 | 8 | 178 | 6 | 174 | 7.06e-39 | 136 |
| Msa0877530 | AT1G16470.1 | 34.146 | 205 | 134 | 1 | 8 | 211 | 6 | 210 | 7.07e-39 | 135 |
| Msa0877530 | AT1G16470.2 | 34.146 | 205 | 134 | 1 | 8 | 211 | 6 | 210 | 7.07e-39 | 135 |
| Msa0877530 | AT1G79210.1 | 34.146 | 205 | 134 | 1 | 8 | 211 | 6 | 210 | 8.30e-39 | 135 |
| Msa0877530 | AT1G79210.2 | 34.146 | 205 | 134 | 1 | 8 | 211 | 6 | 210 | 8.30e-39 | 135 |
| Msa0877530 | AT1G79210.3 | 34.146 | 205 | 134 | 1 | 8 | 211 | 6 | 210 | 8.30e-39 | 135 |
| Msa0877530 | AT5G42790.1 | 42.105 | 171 | 97 | 1 | 8 | 178 | 6 | 174 | 1.17e-38 | 136 |
| Msa0877530 | AT3G14290.1 | 34.783 | 207 | 120 | 2 | 6 | 203 | 6 | 206 | 3.71e-38 | 134 |
| Msa0877530 | AT1G53850.1 | 34.300 | 207 | 121 | 2 | 6 | 203 | 6 | 206 | 9.73e-38 | 132 |
| Msa0877530 | AT1G53850.2 | 34.300 | 207 | 121 | 2 | 6 | 203 | 6 | 206 | 9.73e-38 | 132 |
| Msa0877530 | AT3G22110.1 | 34.783 | 230 | 143 | 5 | 8 | 231 | 5 | 233 | 2.58e-37 | 132 |
| Msa0877530 | AT5G35590.1 | 34.659 | 176 | 113 | 2 | 5 | 178 | 6 | 181 | 1.80e-32 | 119 |
| Msa0877530 | AT2G05840.2 | 35.795 | 176 | 111 | 2 | 5 | 178 | 6 | 181 | 1.39e-31 | 116 |
| Msa0877530 | AT2G05840.1 | 35.795 | 176 | 111 | 2 | 5 | 178 | 6 | 181 | 2.04e-31 | 116 |
| Msa0877530 | AT2G05840.3 | 35.795 | 176 | 111 | 2 | 5 | 178 | 6 | 181 | 2.33e-31 | 115 |
| Msa0877530 | AT5G66140.1 | 34.104 | 173 | 112 | 1 | 8 | 178 | 4 | 176 | 1.36e-28 | 109 |
| Msa0877530 | AT3G51260.1 | 34.104 | 173 | 112 | 1 | 8 | 178 | 4 | 176 | 1.63e-28 | 108 |
| Msa0877530 | AT3G51260.2 | 34.104 | 173 | 112 | 1 | 8 | 178 | 4 | 176 | 2.77e-28 | 108 |
| Msa0877530 | AT4G15165.1 | 30.144 | 209 | 102 | 5 | 8 | 214 | 5 | 171 | 2.37e-20 | 86.3 |
Find 77 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCATAGGCTTCAAAATT+TGG | 0.121626 | 6_1:-17000623 | Msa0877530:three_prime_UTR |
| CATTTGTTTCAGAGGTATTT+TGG | 0.204212 | 6_1:-17002538 | Msa0877530:intron |
| CCTTCGAAAATGATGCTTTC+GGG | 0.215701 | 6_1:-17004182 | Msa0877530:CDS |
| CTTTGTTGCAGGACTGTTAT+TGG | 0.259652 | 6_1:-17004348 | Msa0877530:intron |
| TAATCTTGCTGCAGACCTTT+TGG | 0.265690 | 6_1:-17002747 | Msa0877530:intron |
| CAAGTTATGAAATACATCTT+TGG | 0.270426 | 6_1:+17000676 | None:intergenic |
| GCAAGTTCCTTGACAGGAAT+TGG | 0.290742 | 6_1:+17002898 | None:intergenic |
| ATGCAAGGATGGAATTGTTT+TGG | 0.316941 | 6_1:-17004319 | Msa0877530:intron |
| CCCTTCGAAAATGATGCTTT+CGG | 0.324696 | 6_1:-17004183 | Msa0877530:CDS |
| AAGTTATGAAATACATCTTT+GGG | 0.343298 | 6_1:+17000677 | None:intergenic |
| TTTGTTGCAGGACTGTTATT+GGG | 0.353425 | 6_1:-17004347 | Msa0877530:intron |
| TGTGCAGAGGTGCACGTAAC+TGG | 0.359168 | 6_1:+17002864 | None:intergenic |
| GCCAAAGCTGTCGACAATAG+TGG | 0.361107 | 6_1:-17005355 | Msa0877530:CDS |
| AACGGCGTGAATTCTTCTAT+TGG | 0.385310 | 6_1:+17004157 | None:intergenic |
| AGCTAATTTAGCTGCTGTCT+TGG | 0.388328 | 6_1:+17000742 | None:intergenic |
| TGCACCTCTGCACATTATAC+TGG | 0.388962 | 6_1:-17002855 | Msa0877530:CDS |
| TTGTACATGGTCGAACCTTC+TGG | 0.390091 | 6_1:-17002681 | Msa0877530:CDS |
| TAAATTAGCTCTTGAAGAAA+TGG | 0.390363 | 6_1:-17000729 | Msa0877530:CDS |
| ATCTGGAAAACGCGGCCATC+AGG | 0.404104 | 6_1:+17005388 | None:intergenic |
| TTGTGCAAATGCAGTATATA+TGG | 0.408846 | 6_1:-17001175 | Msa0877530:intron |
| TCCACTTGTCCATGCCAGTA+TGG | 0.410795 | 6_1:-17000478 | Msa0877530:three_prime_UTR |
| CCCACTATTGTCGACAGCTT+TGG | 0.424001 | 6_1:+17005354 | None:intergenic |
| CTTTGGCAGCATATTCGATC+TGG | 0.428766 | 6_1:+17005371 | None:intergenic |
| TTTGGATGTGGTGTCATACT+AGG | 0.432245 | 6_1:-17002729 | Msa0877530:CDS |
| GCTTCTTCTAGAAGCTCCTC+TGG | 0.439481 | 6_1:+17000764 | None:intergenic |
| AACTTGTAATAGAGAGCATT+GGG | 0.446785 | 6_1:-17000659 | Msa0877530:three_prime_UTR |
| CTACTTCAATAACTCCTTGT+CGG | 0.461671 | 6_1:+17001289 | None:intergenic |
| CAAACCAATCGTAGCCATAC+TGG | 0.461708 | 6_1:+17000464 | None:intergenic |
| CACGCCGTTCATCGCCACTC+TGG | 0.470804 | 6_1:-17004143 | Msa0877530:CDS |
| CCTGTCGTAGTTAGTTGCTT+CGG | 0.482274 | 6_1:+17003474 | None:intergenic |
| ATGGAAGGCAAATTGTTGCC+AGG | 0.483133 | 6_1:-17003504 | Msa0877530:CDS |
| TTCAATAACTCCTTGTCGGC+AGG | 0.484664 | 6_1:+17001293 | None:intergenic |
| ATTTCGAACTCGAAATGAGC+TGG | 0.484940 | 6_1:-17001126 | Msa0877530:CDS |
| ATCATGAGTAGCATTGGAAC+AGG | 0.485653 | 6_1:-17005439 | Msa0877530:CDS |
| ATCAAACCGTCAACATGAAA+AGG | 0.490739 | 6_1:-17001092 | Msa0877530:intron |
| AACATAGGATCAGAAGCATT+AGG | 0.495135 | 6_1:-17000373 | Msa0877530:three_prime_UTR |
| TAACTTGTAATAGAGAGCAT+TGG | 0.496052 | 6_1:-17000660 | Msa0877530:three_prime_UTR |
| TCAGCAATCATGAGTAGCAT+TGG | 0.498196 | 6_1:-17005445 | Msa0877530:exon |
| TTTGTTGATTTCTGTTGCTG+TGG | 0.501335 | 6_1:-17000570 | Msa0877530:three_prime_UTR |
| TGCAATCGGGAAGGGCAGAC+AGG | 0.508389 | 6_1:-17002512 | Msa0877530:CDS |
| AGTTGCTTCGGACTTAGCCC+TGG | 0.513490 | 6_1:+17003486 | None:intergenic |
| CGATCAGCAAGTTCCTTGAC+AGG | 0.529831 | 6_1:+17002892 | None:intergenic |
| GCACATTATACTGGTGGCTC+AGG | 0.538022 | 6_1:-17002846 | Msa0877530:intron |
| CATGCCAGTATGGCTACGAT+TGG | 0.541524 | 6_1:-17000468 | Msa0877530:three_prime_UTR |
| CCGAAGCAACTAACTACGAC+AGG | 0.544505 | 6_1:-17003474 | Msa0877530:intron |
| AACATCTATAGAAATCTCAT+AGG | 0.544772 | 6_1:-17000636 | Msa0877530:three_prime_UTR |
| GTCACTACCTTCTCTCCTGA+TGG | 0.549875 | 6_1:-17005403 | Msa0877530:CDS |
| CAGGATTAGCTGCAGATGGA+AGG | 0.556190 | 6_1:-17003519 | Msa0877530:CDS |
| AGTATGACACCACATCCAAA+AGG | 0.565132 | 6_1:+17002732 | None:intergenic |
| CCAAAGCTGTCGACAATAGT+GGG | 0.566060 | 6_1:-17005354 | Msa0877530:intron |
| TTTGGTGCTGCAATCGGGAA+GGG | 0.566694 | 6_1:-17002520 | Msa0877530:CDS |
| TGGAGTTCATGACGAGGCAA+AGG | 0.579021 | 6_1:-17001155 | Msa0877530:CDS |
| CGTTCATCGCCACTCTGGAA+TGG | 0.579273 | 6_1:-17004138 | Msa0877530:intron |
| CATTCCAGAGTGGCGATGAA+CGG | 0.580559 | 6_1:+17004139 | None:intergenic |
| GTAGCAGGATTAGCTGCAGA+TGG | 0.580997 | 6_1:-17003523 | Msa0877530:CDS |
| AGATGGACCACAGTTGTACA+TGG | 0.581771 | 6_1:-17002694 | Msa0877530:CDS |
| TGGTGATCCAATTCCTGTCA+AGG | 0.583937 | 6_1:-17002905 | Msa0877530:CDS |
| TGGAAGGCAAATTGTTGCCA+GGG | 0.588037 | 6_1:-17003503 | Msa0877530:CDS |
| GATTGAAAAGTTGAAGCTTG+CGG | 0.589401 | 6_1:-17001322 | Msa0877530:CDS |
| ACCTCTGCACATTATACTGG+TGG | 0.589474 | 6_1:-17002852 | Msa0877530:CDS |
| TGATTGTGTGCAGGTTCCAG+AGG | 0.592525 | 6_1:-17000780 | Msa0877530:intron |
| ATTGGGATCAGATGCAAGGA+TGG | 0.596379 | 6_1:-17004330 | Msa0877530:CDS |
| GCGGATATGACCTGCCGACA+AGG | 0.597273 | 6_1:-17001303 | Msa0877530:CDS |
| GCCATACTGGCATGGACAAG+TGG | 0.601716 | 6_1:+17000477 | None:intergenic |
| CAAGGAACTTGCTGATCGCG+TGG | 0.607658 | 6_1:-17002887 | Msa0877530:CDS |
| TTTCGAACTCGAAATGAGCT+GGG | 0.612900 | 6_1:-17001125 | Msa0877530:CDS |
| CAATCGTAGCCATACTGGCA+TGG | 0.620784 | 6_1:+17000469 | None:intergenic |
| CATATTCGATCTGGAAAACG+CGG | 0.632406 | 6_1:+17005380 | None:intergenic |
| CTAGGTGGTTACGACAGAGA+TGG | 0.638286 | 6_1:-17002711 | Msa0877530:CDS |
| TGTTATTGGGATCAGATGCA+AGG | 0.646757 | 6_1:-17004334 | Msa0877530:CDS |
| GGATGTGGTGTCATACTAGG+TGG | 0.653371 | 6_1:-17002726 | Msa0877530:CDS |
| GCCACCAGTATAATGTGCAG+AGG | 0.679994 | 6_1:+17002851 | None:intergenic |
| CTCACATAAGAAACACCAGA+AGG | 0.684859 | 6_1:+17002666 | None:intergenic |
| ACAGCAACAGAAATCAACAA+AGG | 0.697409 | 6_1:+17000572 | None:intergenic |
| GGTTCGACCATGTACAACTG+TGG | 0.719686 | 6_1:+17002687 | None:intergenic |
| AACAAAGTACCATTCCAGAG+TGG | 0.731365 | 6_1:+17004129 | None:intergenic |
| TATATATGGAGTTCATGACG+AGG | 0.744573 | 6_1:-17001161 | Msa0877530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAATTATTAATTAA+AGG | - | chr6_1:17001398-17001417 | Msa0877530:intron | 0.0% |
| !! | AAAAAAATCAAAAATTAAAC+AGG | + | chr6_1:17001634-17001653 | None:intergenic | 10.0% |
| !!! | ATAATTTTATTTGTTTAACT+CGG | - | chr6_1:17004065-17004084 | Msa0877530:intron | 10.0% |
| !! | TACATTTAATTAACAAAAAA+AGG | + | chr6_1:17004447-17004466 | None:intergenic | 10.0% |
| !!! | TTCTTTTAATTACTTATATA+TGG | - | chr6_1:17004863-17004882 | Msa0877530:intron | 10.0% |
| !!! | ATTTTTTGTGATGTTAATAA+TGG | - | chr6_1:17000615-17000634 | Msa0877530:three_prime_UTR | 15.0% |
| !!! | TTTTTTGTGATGTTAATAAT+GGG | - | chr6_1:17000616-17000635 | Msa0877530:three_prime_UTR | 15.0% |
| !!! | GCAATTGAATTTTTATTTTT+AGG | - | chr6_1:17000677-17000696 | Msa0877530:three_prime_UTR | 15.0% |
| !!! | TGAAATGTAGTTTTATTTTA+AGG | - | chr6_1:17001316-17001335 | Msa0877530:CDS | 15.0% |
| !!! | TTTATTTTAAGGTTTTTGTT+TGG | - | chr6_1:17001327-17001346 | Msa0877530:CDS | 15.0% |
| !!! | GTTTTAGTTATTTTAAGAAT+TGG | - | chr6_1:17001420-17001439 | Msa0877530:intron | 15.0% |
| !!! | ATTTTAAGAATTGGAATTAA+CGG | - | chr6_1:17001429-17001448 | Msa0877530:intron | 15.0% |
| !!! | GTAGTTTTTATTTTAAGAAT+TGG | - | chr6_1:17001464-17001483 | Msa0877530:intron | 15.0% |
| !!! | AAGTTTTTAATAAAGTTAGA+TGG | - | chr6_1:17002526-17002545 | Msa0877530:CDS | 15.0% |
| !! | TAATAAGCATATTACATATA+AGG | + | chr6_1:17003820-17003839 | None:intergenic | 15.0% |
| !!! | AAACTTAAAACACAATATTT+TGG | - | chr6_1:17004019-17004038 | Msa0877530:intron | 15.0% |
| !! | TCGATAAATATAAAAAATAC+TGG | - | chr6_1:17004139-17004158 | Msa0877530:CDS | 15.0% |
| !!! | AGTTCATATTTTTATGTTTA+TGG | - | chr6_1:17004983-17005002 | Msa0877530:intron | 15.0% |
| !!! | GGTTTTGTTATTTTAAGATT+TGG | - | chr6_1:17001167-17001186 | Msa0877530:intron | 20.0% |
| !!! | AGTTTTTTATTTTAGGTTTG+AGG | - | chr6_1:17001198-17001217 | Msa0877530:intron | 20.0% |
| !!! | ACTTTTTTAGATACTAGTTT+TGG | - | chr6_1:17001255-17001274 | Msa0877530:intron | 20.0% |
| !!! | CTTTTTTAGATACTAGTTTT+GGG | - | chr6_1:17001256-17001275 | Msa0877530:intron | 20.0% |
| !!! | TATTTTAAGAATTGGAATTG+AGG | - | chr6_1:17001472-17001491 | Msa0877530:intron | 20.0% |
| !!! | ATTTTAAGAATTGGAATTGA+GGG | - | chr6_1:17001473-17001492 | Msa0877530:intron | 20.0% |
| !!! | TGTTAATTTTTGTGCAAATT+TGG | - | chr6_1:17001654-17001673 | Msa0877530:intron | 20.0% |
| !! | CATTCTATATAATATGTAGT+AGG | + | chr6_1:17002071-17002090 | None:intergenic | 20.0% |
| !!! | TATTAGAAAAGTATCAACAA+TGG | + | chr6_1:17002218-17002237 | None:intergenic | 20.0% |
| !!! | ACAAATCTTTTTCCAATTTT+AGG | - | chr6_1:17002339-17002358 | Msa0877530:intron | 20.0% |
| !! | TGTATTTAATCAAATAAAGG+AGG | + | chr6_1:17002476-17002495 | None:intergenic | 20.0% |
| !! | TGGTGTATTTAATCAAATAA+AGG | + | chr6_1:17002479-17002498 | None:intergenic | 20.0% |
| !!! | ATTTTTATCACATATTAGTC+AGG | + | chr6_1:17002610-17002629 | None:intergenic | 20.0% |
| !!! | AATTTGATAACTTGAAATAG+AGG | - | chr6_1:17002717-17002736 | Msa0877530:CDS | 20.0% |
| !! | CAGTAAAAAAAAAAATCACA+TGG | + | chr6_1:17003314-17003333 | None:intergenic | 20.0% |
| !!! | TTTTACTGATTTGTTTGTAT+TGG | - | chr6_1:17003326-17003345 | Msa0877530:intron | 20.0% |
| !!! | TCTAAAATGAACAATAATTG+TGG | - | chr6_1:17003543-17003562 | Msa0877530:intron | 20.0% |
| !! | AAACATAGACAGTAATTAAA+AGG | + | chr6_1:17003572-17003591 | None:intergenic | 20.0% |
| !!! | TTTTAATTACTGTCTATGTT+TGG | - | chr6_1:17003571-17003590 | Msa0877530:intron | 20.0% |
| !! | TTTAATTACTGTCTATGTTT+GGG | - | chr6_1:17003572-17003591 | Msa0877530:intron | 20.0% |
| !! | ATATTATTTACAGAATGCAA+AGG | + | chr6_1:17003626-17003645 | None:intergenic | 20.0% |
| !!! | TAGCTTATATGTTACTTTAA+AGG | - | chr6_1:17003766-17003785 | Msa0877530:intron | 20.0% |
| !! | ATGTAATATGCTTATTAGAA+TGG | - | chr6_1:17003823-17003842 | Msa0877530:intron | 20.0% |
| !! | GTTATTATATTATTGTTCAG+TGG | - | chr6_1:17004408-17004427 | Msa0877530:intron | 20.0% |
| !! | TGTAAAACAAAATTCTGATA+TGG | + | chr6_1:17004516-17004535 | None:intergenic | 20.0% |
| !! | AAGTTATGAAATACATCTTT+GGG | + | chr6_1:17005213-17005232 | None:intergenic | 20.0% |
| !!! | GATTTAGTGTTTCATTTTAT+CGG | - | chr6_1:17005381-17005400 | Msa0877530:CDS | 20.0% |
| !!! | CATTTTCATTTTTCAAACAT+AGG | - | chr6_1:17005499-17005518 | Msa0877530:five_prime_UTR | 20.0% |
| !!! | CGATTGATTTTGAGTTTTTT+TGG | + | chr6_1:17000404-17000423 | None:intergenic | 25.0% |
| !! | CAACTTTTTGAATCAAGTTT+TGG | - | chr6_1:17000571-17000590 | Msa0877530:three_prime_UTR | 25.0% |
| !!! | TGTTTTTGGATTTGGAATTA+TGG | - | chr6_1:17000646-17000665 | Msa0877530:three_prime_UTR | 25.0% |
| !!! | GTTTTTGGATTTGGAATTAT+GGG | - | chr6_1:17000647-17000666 | Msa0877530:three_prime_UTR | 25.0% |
| !!! | TAATGGGTTTTGTTTCTTTT+AGG | - | chr6_1:17000765-17000784 | Msa0877530:CDS | 25.0% |
| !!! | GTTTTGTTTCTTTTAGGAAT+TGG | - | chr6_1:17000771-17000790 | Msa0877530:intron | 25.0% |
| !! | GTTTCTCTTATAGATTTTCT+AGG | + | chr6_1:17000979-17000998 | None:intergenic | 25.0% |
| ! | AATCTATAAGAGAAACTGTT+AGG | - | chr6_1:17000983-17001002 | Msa0877530:intron | 25.0% |
| ! | AGATTTGGAAATTAATGTGT+TGG | - | chr6_1:17001008-17001027 | Msa0877530:intron | 25.0% |
| ! | TTCTATCATTCACCAAATTT+CGG | + | chr6_1:17001035-17001054 | None:intergenic | 25.0% |
| ! | ATGTTCTGTAATATGCATTA+TGG | - | chr6_1:17001145-17001164 | Msa0877530:CDS | 25.0% |
| ! | TGTTCTGTAATATGCATTAT+GGG | - | chr6_1:17001146-17001165 | Msa0877530:CDS | 25.0% |
| !!! | AACCTGCAGTTTTTTATTTT+AGG | - | chr6_1:17001191-17001210 | Msa0877530:intron | 25.0% |
| ! | AACCTAAAATAAAAAACTGC+AGG | + | chr6_1:17001196-17001215 | None:intergenic | 25.0% |
| !! | AGATTGTTATTCTGATAATC+TGG | - | chr6_1:17001602-17001621 | Msa0877530:intron | 25.0% |
| !! | GATTGTTATTCTGATAATCT+GGG | - | chr6_1:17001603-17001622 | Msa0877530:intron | 25.0% |
| !! | ATTGTTATTCTGATAATCTG+GGG | - | chr6_1:17001604-17001623 | Msa0877530:intron | 25.0% |
| !!! | TGCAAATTTGGTTGATTTTA+GGG | - | chr6_1:17001666-17001685 | Msa0877530:intron | 25.0% |
| !! | GATGTGAATCGTTTAAAATT+TGG | + | chr6_1:17002095-17002114 | None:intergenic | 25.0% |
| !!! | ATAAAGTTAGATGGACTAAT+AGG | - | chr6_1:17002535-17002554 | Msa0877530:intron | 25.0% |
| !! | AGAACGTGTGAAATTATTTT+AGG | - | chr6_1:17002574-17002593 | Msa0877530:intron | 25.0% |
| ! | TAGTTTGGACAAATAACATT+TGG | + | chr6_1:17002636-17002655 | None:intergenic | 25.0% |
| ! | ATAATGATCTCATTATTCTG+AGG | - | chr6_1:17002896-17002915 | Msa0877530:CDS | 25.0% |
| ! | AGAAGAATGTTTGTTTATTC+TGG | - | chr6_1:17002937-17002956 | Msa0877530:intron | 25.0% |
| !! | ATATTTCTTTTCAGTGTGTA+TGG | - | chr6_1:17002962-17002981 | Msa0877530:intron | 25.0% |
| ! | ATAAAAAATCACTGTAGCTA+AGG | + | chr6_1:17003288-17003307 | None:intergenic | 25.0% |
| ! | TTATATTATTGTTCAGTGGA+TGG | - | chr6_1:17004412-17004431 | Msa0877530:intron | 25.0% |
| ! | AATTAAATGTAACTCTTCTG+TGG | - | chr6_1:17004456-17004475 | Msa0877530:intron | 25.0% |
| !!! | TTCATCTGTTTGATTTGTAT+TGG | - | chr6_1:17004915-17004934 | Msa0877530:intron | 25.0% |
| !! | TTGCATAGAATTGTAGTTTT+TGG | - | chr6_1:17005043-17005062 | Msa0877530:intron | 25.0% |
| !! | TAAATTAGCTCTTGAAGAAA+TGG | - | chr6_1:17005158-17005177 | Msa0877530:intron | 25.0% |
| ! | CAAGTTATGAAATACATCTT+TGG | + | chr6_1:17005214-17005233 | None:intergenic | 25.0% |
| ! | AACATCTATAGAAATCTCAT+AGG | - | chr6_1:17005251-17005270 | Msa0877530:intron | 25.0% |
| !!! | GTGATGTTAATAATGGGTTT+TGG | - | chr6_1:17000622-17000641 | Msa0877530:three_prime_UTR | 30.0% |
| !!! | TAATGGGTTTTGGTTGTTTT+TGG | - | chr6_1:17000632-17000651 | Msa0877530:three_prime_UTR | 30.0% |
| !!! | GTTTTGGTTGTTTTTGGATT+TGG | - | chr6_1:17000638-17000657 | Msa0877530:three_prime_UTR | 30.0% |
| !! | TCTTTTAGGAATTGGAATCA+AGG | - | chr6_1:17000779-17000798 | Msa0877530:intron | 30.0% |
| !! | CTTTTAGGAATTGGAATCAA+GGG | - | chr6_1:17000780-17000799 | Msa0877530:intron | 30.0% |
| ! | AGCTAGTGATTTTTGATAGA+TGG | - | chr6_1:17000844-17000863 | Msa0877530:intron | 30.0% |
| ! | TAGTGATTTTTGATAGATGG+TGG | - | chr6_1:17000847-17000866 | Msa0877530:intron | 30.0% |
| GACGTATATATTGTGTAGTA+CGG | - | chr6_1:17000906-17000925 | Msa0877530:intron | 30.0% | |
| AGAAACTGTTAGGAAAGATT+TGG | - | chr6_1:17000993-17001012 | Msa0877530:intron | 30.0% | |
| TGGTGAATGATAGAACATTA+TGG | - | chr6_1:17001040-17001059 | Msa0877530:intron | 30.0% | |
| ! | TCGTTTGAGATTTGAAAGTA+AGG | - | chr6_1:17001286-17001305 | Msa0877530:CDS | 30.0% |
| ! | CGTTTGAGATTTGAAAGTAA+GGG | - | chr6_1:17001287-17001306 | Msa0877530:CDS | 30.0% |
| TTAGATTTGAACTTTGTTGC+AGG | - | chr6_1:17001528-17001547 | Msa0877530:intron | 30.0% | |
| ! | TTGTTATTCTGATAATCTGG+GGG | - | chr6_1:17001605-17001624 | Msa0877530:intron | 30.0% |
| !! | GTGCAAATTTGGTTGATTTT+AGG | - | chr6_1:17001665-17001684 | Msa0877530:intron | 30.0% |
| GAAAGACAGTAACAAAATGA+CGG | + | chr6_1:17001798-17001817 | None:intergenic | 30.0% | |
| ! | TTTTGTTACTGTCTTTCGTT+TGG | - | chr6_1:17001801-17001820 | Msa0877530:intron | 30.0% |
| TCTGGTCAAGACAAAAATAA+CGG | + | chr6_1:17001843-17001862 | None:intergenic | 30.0% | |
| TAAGAGTGAAAGATTGTGAA+GGG | - | chr6_1:17001868-17001887 | Msa0877530:intron | 30.0% | |
| ! | TCTATCACTGAATGATCTTT+TGG | - | chr6_1:17001922-17001941 | Msa0877530:intron | 30.0% |
| ! | TTGGATCTTAGTAGTTCTAT+GGG | - | chr6_1:17002010-17002029 | Msa0877530:intron | 30.0% |
| !! | AGAAAAGTATCAACAATGGA+AGG | + | chr6_1:17002214-17002233 | None:intergenic | 30.0% |
| AAGTAATAGTTGCAAGCAAA+TGG | + | chr6_1:17002445-17002464 | None:intergenic | 30.0% | |
| ATAACTTGAAATAGAGGTGA+AGG | - | chr6_1:17002723-17002742 | Msa0877530:CDS | 30.0% | |
| GGTTTCTTGAAACTTGAAAT+AGG | - | chr6_1:17002744-17002763 | Msa0877530:intron | 30.0% | |
| !!! | CATTTGTTTCAGAGGTATTT+TGG | - | chr6_1:17003349-17003368 | Msa0877530:intron | 30.0% |
| ! | CAAATAACTACTTTGAGTTC+CGG | - | chr6_1:17003684-17003703 | Msa0877530:intron | 30.0% |
| TAACAAGTAACAACAAACAC+TGG | + | chr6_1:17004650-17004669 | None:intergenic | 30.0% | |
| TTGTGCAAATGCAGTATATA+TGG | - | chr6_1:17004712-17004731 | Msa0877530:intron | 30.0% | |
| TCAAACAGATGAAACAAATG+TGG | + | chr6_1:17004908-17004927 | None:intergenic | 30.0% | |
| ! | TAACTTGTAATAGAGAGCAT+TGG | - | chr6_1:17005227-17005246 | Msa0877530:intron | 30.0% |
| !! | AACTTGTAATAGAGAGCATT+GGG | - | chr6_1:17005228-17005247 | Msa0877530:intron | 30.0% |
| ATCTCATAGGCTTCAAAATT+TGG | - | chr6_1:17005264-17005283 | Msa0877530:intron | 30.0% | |
| !! | AGATGGTGGAAAATATGCTT+AGG | - | chr6_1:17000861-17000880 | Msa0877530:intron | 35.0% |
| !! | GATGGTGGAAAATATGCTTA+GGG | - | chr6_1:17000862-17000881 | Msa0877530:intron | 35.0% |
| ! | ATGGTGGAAAATATGCTTAG+GGG | - | chr6_1:17000863-17000882 | Msa0877530:intron | 35.0% |
| AGTACGGATAGTAAATCAGA+TGG | - | chr6_1:17000922-17000941 | Msa0877530:intron | 35.0% | |
| TAATGTGTTGGACCGAAATT+TGG | - | chr6_1:17001020-17001039 | Msa0877530:intron | 35.0% | |
| ! | CTTTTCCTACTATGTGGAAT+CGG | + | chr6_1:17001085-17001104 | None:intergenic | 35.0% |
| ! | TGGAATTGAGGGTTTTTGTT+TGG | - | chr6_1:17001484-17001503 | Msa0877530:intron | 35.0% |
| TTTGTTGCAGGACTGTTATT+GGG | - | chr6_1:17001540-17001559 | Msa0877530:intron | 35.0% | |
| ! | ATGCAAGGATGGAATTGTTT+TGG | - | chr6_1:17001568-17001587 | Msa0877530:intron | 35.0% |
| TCTTTCACTCTTAGACATTC+TGG | + | chr6_1:17001861-17001880 | None:intergenic | 35.0% | |
| CTAAGAGTGAAAGATTGTGA+AGG | - | chr6_1:17001867-17001886 | Msa0877530:intron | 35.0% | |
| AAGAGTGAAAGATTGTGAAG+GGG | - | chr6_1:17001869-17001888 | Msa0877530:intron | 35.0% | |
| AGTAGCATTAAGTAGAAGCA+GGG | - | chr6_1:17001948-17001967 | Msa0877530:intron | 35.0% | |
| ! | CTTGGATCTTAGTAGTTCTA+TGG | - | chr6_1:17002009-17002028 | Msa0877530:intron | 35.0% |
| ! | AGTTCTATGGGATTAGCATA+AGG | - | chr6_1:17002022-17002041 | Msa0877530:intron | 35.0% |
| TACACCATCTGTGATTGAAT+TGG | - | chr6_1:17002492-17002511 | Msa0877530:intron | 35.0% | |
| GACTAATAGGAACCATATAG+TGG | - | chr6_1:17002548-17002567 | Msa0877530:intron | 35.0% | |
| ! | ACACGTTCTTTTCCACTATA+TGG | + | chr6_1:17002563-17002582 | None:intergenic | 35.0% |
| TCTAACACGTCATCATAGTT+TGG | + | chr6_1:17002651-17002670 | None:intergenic | 35.0% | |
| ! | AAACTATGATGACGTGTTAG+AGG | - | chr6_1:17002650-17002669 | Msa0877530:intron | 35.0% |
| ! | AAACACTGCTTGATGATTGA+TGG | - | chr6_1:17002809-17002828 | Msa0877530:intron | 35.0% |
| ! | TGTATTGGCATTTGTTTCAG+AGG | - | chr6_1:17003341-17003360 | Msa0877530:intron | 35.0% |
| TACTGCCCAAAAAAATGATG+GGG | + | chr6_1:17004091-17004110 | None:intergenic | 35.0% | |
| CTACTGCCCAAAAAAATGAT+GGG | + | chr6_1:17004092-17004111 | None:intergenic | 35.0% | |
| ACTACTGCCCAAAAAAATGA+TGG | + | chr6_1:17004093-17004112 | None:intergenic | 35.0% | |
| !!! | CATTTTTTTGGGCAGTAGTA+TGG | - | chr6_1:17004094-17004113 | Msa0877530:intron | 35.0% |
| !! | TGGTAATAAGTGTTGAACAG+AGG | - | chr6_1:17004159-17004178 | Msa0877530:CDS | 35.0% |
| !! | GGTAATAAGTGTTGAACAGA+GGG | - | chr6_1:17004160-17004179 | Msa0877530:CDS | 35.0% |
| GAGAGATTAAGAAAAACTGC+AGG | - | chr6_1:17004203-17004222 | Msa0877530:CDS | 35.0% | |
| !! | GAGTTGATTTGGACTATCTT+TGG | - | chr6_1:17004248-17004267 | Msa0877530:intron | 35.0% |
| TATCTTGTGAATGTCTTTGC+AGG | - | chr6_1:17004540-17004559 | Msa0877530:intron | 35.0% | |
| ATCTTGTGAATGTCTTTGCA+GGG | - | chr6_1:17004541-17004560 | Msa0877530:intron | 35.0% | |
| GATTGAAAAGTTGAAGCTTG+CGG | - | chr6_1:17004565-17004584 | Msa0877530:intron | 35.0% | |
| CTACTTCAATAACTCCTTGT+CGG | + | chr6_1:17004601-17004620 | None:intergenic | 35.0% | |
| TATATATGGAGTTCATGACG+AGG | - | chr6_1:17004726-17004745 | Msa0877530:intron | 35.0% | |
| ATCAAACCGTCAACATGAAA+AGG | - | chr6_1:17004795-17004814 | Msa0877530:intron | 35.0% | |
| AACTTGAATGCATTTCGACA+GGG | + | chr6_1:17005022-17005041 | None:intergenic | 35.0% | |
| AAACTTGAATGCATTTCGAC+AGG | + | chr6_1:17005023-17005042 | None:intergenic | 35.0% | |
| ACAATCAATTTCGTAGCACA+TGG | + | chr6_1:17005094-17005113 | None:intergenic | 35.0% | |
| ACAGCAACAGAAATCAACAA+AGG | + | chr6_1:17005318-17005337 | None:intergenic | 35.0% | |
| !! | TTTGTTGATTTCTGTTGCTG+TGG | - | chr6_1:17005317-17005336 | Msa0877530:intron | 35.0% |
| !! | AACATAGGATCAGAAGCATT+AGG | - | chr6_1:17005514-17005533 | Msa0877530:five_prime_UTR | 35.0% |
| TCAGCAATCATGAGTAGCAT+TGG | - | chr6_1:17000442-17000461 | Msa0877530:three_prime_UTR | 40.0% | |
| ! | ATCATGAGTAGCATTGGAAC+AGG | - | chr6_1:17000448-17000467 | Msa0877530:three_prime_UTR | 40.0% |
| CATATTCGATCTGGAAAACG+CGG | + | chr6_1:17000510-17000529 | None:intergenic | 40.0% | |
| TGGTGGAAAATATGCTTAGG+GGG | - | chr6_1:17000864-17000883 | Msa0877530:intron | 40.0% | |
| GAAAATATGCTTAGGGGGTT+TGG | - | chr6_1:17000869-17000888 | Msa0877530:intron | 40.0% | |
| ACGGATAGTAAATCAGATGG+AGG | - | chr6_1:17000925-17000944 | Msa0877530:intron | 40.0% | |
| GGAGGATAGTAGATAACTAG+AGG | - | chr6_1:17000943-17000962 | Msa0877530:intron | 40.0% | |
| TAGTAGATAACTAGAGGCAG+AGG | - | chr6_1:17000949-17000968 | Msa0877530:intron | 40.0% | |
| CGATTCCACATAGTAGGAAA+AGG | - | chr6_1:17001083-17001102 | Msa0877530:intron | 40.0% | |
| CTTTGTTGCAGGACTGTTAT+TGG | - | chr6_1:17001539-17001558 | Msa0877530:intron | 40.0% | |
| TGTTATTGGGATCAGATGCA+AGG | - | chr6_1:17001553-17001572 | Msa0877530:intron | 40.0% | |
| !!! | CCGAAAGCATCATTTTCGAA+GGG | + | chr6_1:17001707-17001726 | None:intergenic | 40.0% |
| CCCTTCGAAAATGATGCTTT+CGG | - | chr6_1:17001704-17001723 | Msa0877530:intron | 40.0% | |
| CCTTCGAAAATGATGCTTTC+GGG | - | chr6_1:17001705-17001724 | Msa0877530:intron | 40.0% | |
| AACGGCGTGAATTCTTCTAT+TGG | + | chr6_1:17001733-17001752 | None:intergenic | 40.0% | |
| ! | AACAAAGTACCATTCCAGAG+TGG | + | chr6_1:17001761-17001780 | None:intergenic | 40.0% |
| CAGTAGCATTAAGTAGAAGC+AGG | - | chr6_1:17001947-17001966 | Msa0877530:intron | 40.0% | |
| TAAGTAGAAGCAGGGTTCTA+AGG | - | chr6_1:17001956-17001975 | Msa0877530:intron | 40.0% | |
| TCCTGCGTGTTTATTTGTCT+TGG | - | chr6_1:17001991-17002010 | Msa0877530:intron | 40.0% | |
| TCCAAGACAAATAAACACGC+AGG | + | chr6_1:17001995-17002014 | None:intergenic | 40.0% | |
| TTAAGTTCTTGTGTGCACCT+GGG | - | chr6_1:17002152-17002171 | Msa0877530:intron | 40.0% | |
| ! | TTCCAATTTTAGGCTGTAGC+AGG | - | chr6_1:17002349-17002368 | Msa0877530:intron | 40.0% |
| ATCCTGCTACAGCCTAAAAT+TGG | + | chr6_1:17002354-17002373 | None:intergenic | 40.0% | |
| GCATCCAATTCAATCACAGA+TGG | + | chr6_1:17002499-17002518 | None:intergenic | 40.0% | |
| TGTTCTATCCTAACACGTGT+CGG | - | chr6_1:17003092-17003111 | Msa0877530:intron | 40.0% | |
| ! | TAATCTTGCTGCAGACCTTT+TGG | - | chr6_1:17003140-17003159 | Msa0877530:intron | 40.0% |
| AGTATGACACCACATCCAAA+AGG | + | chr6_1:17003158-17003177 | None:intergenic | 40.0% | |
| !! | TTTGGATGTGGTGTCATACT+AGG | - | chr6_1:17003158-17003177 | Msa0877530:intron | 40.0% |
| CTCACATAAGAAACACCAGA+AGG | + | chr6_1:17003224-17003243 | None:intergenic | 40.0% | |
| !!! | AGGTATTTTGGTGCTGCAAT+CGG | - | chr6_1:17003361-17003380 | Msa0877530:intron | 40.0% |
| ! | TACTTTGAGTTCCGGTTACA+TGG | - | chr6_1:17003692-17003711 | Msa0877530:intron | 40.0% |
| ! | ACTTTGAGTTCCGGTTACAT+GGG | - | chr6_1:17003693-17003712 | Msa0877530:intron | 40.0% |
| ATTTGACAATCAGCTGCTGA+AGG | - | chr6_1:17003731-17003750 | Msa0877530:intron | 40.0% | |
| TATGTTGAGGCATGAGCAAA+GGG | + | chr6_1:17003910-17003929 | None:intergenic | 40.0% | |
| CTTCAAAAGAAGAGCCTCTA+AGG | + | chr6_1:17003949-17003968 | None:intergenic | 40.0% | |
| TTGTACCCTCCCTAAAACAA+CGG | + | chr6_1:17004001-17004020 | None:intergenic | 40.0% | |
| !! | AATAAGTGTTGAACAGAGGG+AGG | - | chr6_1:17004163-17004182 | Msa0877530:CDS | 40.0% |
| !! | ATAAGTGTTGAACAGAGGGA+GGG | - | chr6_1:17004164-17004183 | Msa0877530:CDS | 40.0% |
| GGAGGGTAGTTCAATAAGTA+GGG | - | chr6_1:17004181-17004200 | Msa0877530:CDS | 40.0% | |
| ! | AGCGAGATTGAGAGTTGATT+TGG | - | chr6_1:17004237-17004256 | Msa0877530:intron | 40.0% |
| TTTGGACATAAGCCATGACA+AGG | - | chr6_1:17004266-17004285 | Msa0877530:intron | 40.0% | |
| TAAGCCATGACAAGGAACTA+TGG | - | chr6_1:17004274-17004293 | Msa0877530:intron | 40.0% | |
| ! | CAATTGAACCTTTTCTCGCT+AGG | + | chr6_1:17004335-17004354 | None:intergenic | 40.0% |
| ATTTCGAACTCGAAATGAGC+TGG | - | chr6_1:17004761-17004780 | Msa0877530:intron | 40.0% | |
| TTTCGAACTCGAAATGAGCT+GGG | - | chr6_1:17004762-17004781 | Msa0877530:intron | 40.0% | |
| ACCGTCAACATGAAAAGGTA+AGG | - | chr6_1:17004800-17004819 | Msa0877530:intron | 40.0% | |
| ! | GCCTTACCTTTTCATGTTGA+CGG | + | chr6_1:17004804-17004823 | None:intergenic | 40.0% |
| TCAACATGAAAAGGTAAGGC+AGG | - | chr6_1:17004804-17004823 | Msa0877530:intron | 40.0% | |
| CAACATGAAAAGGTAAGGCA+GGG | - | chr6_1:17004805-17004824 | Msa0877530:intron | 40.0% | |
| CTACGAAATTGATTGTGTGC+AGG | - | chr6_1:17005098-17005117 | Msa0877530:intron | 40.0% | |
| AGCTAATTTAGCTGCTGTCT+TGG | + | chr6_1:17005148-17005167 | None:intergenic | 40.0% | |
| CTTTGGCAGCATATTCGATC+TGG | + | chr6_1:17000519-17000538 | None:intergenic | 45.0% | |
| CCAAAGCTGTCGACAATAGT+GGG | - | chr6_1:17000533-17000552 | Msa0877530:three_prime_UTR | 45.0% | |
| ! | TGTAGCCGATTCCACATAGT+AGG | - | chr6_1:17001077-17001096 | Msa0877530:intron | 45.0% |
| ! | CCAAGCCTTTTCCTACTATG+TGG | + | chr6_1:17001091-17001110 | None:intergenic | 45.0% |
| CCACATAGTAGGAAAAGGCT+TGG | - | chr6_1:17001088-17001107 | Msa0877530:intron | 45.0% | |
| ! | GTAGGAAAAGGCTTGGTTGT+TGG | - | chr6_1:17001095-17001114 | Msa0877530:CDS | 45.0% |
| ATTGGGATCAGATGCAAGGA+TGG | - | chr6_1:17001557-17001576 | Msa0877530:intron | 45.0% | |
| !!! | CCCGAAAGCATCATTTTCGA+AGG | + | chr6_1:17001708-17001727 | None:intergenic | 45.0% |
| GTTAAGTTCTTGTGTGCACC+TGG | - | chr6_1:17002151-17002170 | Msa0877530:intron | 45.0% | |
| TAAGTTCTTGTGTGCACCTG+GGG | - | chr6_1:17002153-17002172 | Msa0877530:intron | 45.0% | |
| ATGGAAGGCAAATTGTTGCC+AGG | - | chr6_1:17002383-17002402 | Msa0877530:intron | 45.0% | |
| TGGAAGGCAAATTGTTGCCA+GGG | - | chr6_1:17002384-17002403 | Msa0877530:intron | 45.0% | |
| CCTGTCGTAGTTAGTTGCTT+CGG | + | chr6_1:17002416-17002435 | None:intergenic | 45.0% | |
| ! | CTATGATGACGTGTTAGAGG+TGG | - | chr6_1:17002653-17002672 | Msa0877530:intron | 45.0% |
| TGGTGATCCAATTCCTGTCA+AGG | - | chr6_1:17002982-17003001 | Msa0877530:intron | 45.0% | |
| GCAAGTTCCTTGACAGGAAT+TGG | + | chr6_1:17002992-17003011 | None:intergenic | 45.0% | |
| TGCACCTCTGCACATTATAC+TGG | - | chr6_1:17003032-17003051 | Msa0877530:intron | 45.0% | |
| ACCTCTGCACATTATACTGG+TGG | - | chr6_1:17003035-17003054 | Msa0877530:intron | 45.0% | |
| ! | TGAAGTATCCGACACGTGTT+AGG | + | chr6_1:17003103-17003122 | None:intergenic | 45.0% |
| AGATGGACCACAGTTGTACA+TGG | - | chr6_1:17003193-17003212 | Msa0877530:intron | 45.0% | |
| TTGTACATGGTCGAACCTTC+TGG | - | chr6_1:17003206-17003225 | Msa0877530:intron | 45.0% | |
| !!! | GGTATTTTGGTGCTGCAATC+GGG | - | chr6_1:17003362-17003381 | Msa0877530:intron | 45.0% |
| ! | CTTTGAGTTCCGGTTACATG+GGG | - | chr6_1:17003694-17003713 | Msa0877530:intron | 45.0% |
| AACAGAGATCCCCATGTAAC+CGG | + | chr6_1:17003706-17003725 | None:intergenic | 45.0% | |
| ! | ACATGGACTGTACCAGAGAA+GGG | + | chr6_1:17003874-17003893 | None:intergenic | 45.0% |
| ! | AACATGGACTGTACCAGAGA+AGG | + | chr6_1:17003875-17003894 | None:intergenic | 45.0% |
| ATGTTGAGGCATGAGCAAAG+GGG | + | chr6_1:17003909-17003928 | None:intergenic | 45.0% | |
| GTATGTTGAGGCATGAGCAA+AGG | + | chr6_1:17003911-17003930 | None:intergenic | 45.0% | |
| CAAAGCGCACAAGTATGTTG+AGG | + | chr6_1:17003923-17003942 | None:intergenic | 45.0% | |
| !! | TGCAAGTTTTGTCCCGTATG+AGG | - | chr6_1:17003969-17003988 | Msa0877530:intron | 45.0% |
| !!! | ACTCGGCCCCATCATTTTTT+TGG | - | chr6_1:17004082-17004101 | Msa0877530:intron | 45.0% |
| !!! | CTCGGCCCCATCATTTTTTT+GGG | - | chr6_1:17004083-17004102 | Msa0877530:intron | 45.0% |
| GGGAGGGTAGTTCAATAAGT+AGG | - | chr6_1:17004180-17004199 | Msa0877530:CDS | 45.0% | |
| CTATGGCGTCGTTTGGTAAA+TGG | - | chr6_1:17004291-17004310 | Msa0877530:intron | 45.0% | |
| TGATCCTACCTAGCGAGAAA+AGG | - | chr6_1:17004324-17004343 | Msa0877530:CDS | 45.0% | |
| ! | TGAACCTTTTCTCGCTAGGT+AGG | + | chr6_1:17004331-17004350 | None:intergenic | 45.0% |
| TTCAATAACTCCTTGTCGGC+AGG | + | chr6_1:17004597-17004616 | None:intergenic | 45.0% | |
| ATGCATTTCGACAGGGATTG+TGG | + | chr6_1:17005015-17005034 | None:intergenic | 45.0% | |
| CAAACCAATCGTAGCCATAC+TGG | + | chr6_1:17005426-17005445 | None:intergenic | 45.0% | |
| !!! | ATTTTTTTAGATATTAATAA+TGG | - | chr6_1:17000748-17000767 | Msa0877530:CDS | 5.0% |
| !!! | TTTTTTTAGATATTAATAAT+GGG | - | chr6_1:17000749-17000768 | Msa0877530:CDS | 5.0% |
| GTCACTACCTTCTCTCCTGA+TGG | - | chr6_1:17000484-17000503 | Msa0877530:three_prime_UTR | 50.0% | |
| GCCAAAGCTGTCGACAATAG+TGG | - | chr6_1:17000532-17000551 | Msa0877530:three_prime_UTR | 50.0% | |
| CCCACTATTGTCGACAGCTT+TGG | + | chr6_1:17000536-17000555 | None:intergenic | 50.0% | |
| !! | AGCTGTCGACAATAGTGGGT+AGG | - | chr6_1:17000537-17000556 | Msa0877530:three_prime_UTR | 50.0% |
| !! | GCTGTCGACAATAGTGGGTA+GGG | - | chr6_1:17000538-17000557 | Msa0877530:three_prime_UTR | 50.0% |
| TAGGGGGTTTGGACATGTAG+AGG | - | chr6_1:17000880-17000899 | Msa0877530:intron | 50.0% | |
| AGGGGGTTTGGACATGTAGA+GGG | - | chr6_1:17000881-17000900 | Msa0877530:intron | 50.0% | |
| CATTCCAGAGTGGCGATGAA+CGG | + | chr6_1:17001751-17001770 | None:intergenic | 50.0% | |
| !! | GTAGCAGGATTAGCTGCAGA+TGG | - | chr6_1:17002364-17002383 | Msa0877530:intron | 50.0% |
| !! | CAGGATTAGCTGCAGATGGA+AGG | - | chr6_1:17002368-17002387 | Msa0877530:intron | 50.0% |
| CCGAAGCAACTAACTACGAC+AGG | - | chr6_1:17002413-17002432 | Msa0877530:intron | 50.0% | |
| CGATCAGCAAGTTCCTTGAC+AGG | + | chr6_1:17002998-17003017 | None:intergenic | 50.0% | |
| GCCACCAGTATAATGTGCAG+AGG | + | chr6_1:17003039-17003058 | None:intergenic | 50.0% | |
| GCACATTATACTGGTGGCTC+AGG | - | chr6_1:17003041-17003060 | Msa0877530:intron | 50.0% | |
| ! | TGCTGCAGACCTTTTGGATG+TGG | - | chr6_1:17003146-17003165 | Msa0877530:intron | 50.0% |
| !! | GGATGTGGTGTCATACTAGG+TGG | - | chr6_1:17003161-17003180 | Msa0877530:intron | 50.0% |
| CTAGGTGGTTACGACAGAGA+TGG | - | chr6_1:17003176-17003195 | Msa0877530:intron | 50.0% | |
| GGTTCGACCATGTACAACTG+TGG | + | chr6_1:17003203-17003222 | None:intergenic | 50.0% | |
| !!! | TTTTGGTGCTGCAATCGGGA+AGG | - | chr6_1:17003366-17003385 | Msa0877530:intron | 50.0% |
| !! | TTTGGTGCTGCAATCGGGAA+GGG | - | chr6_1:17003367-17003386 | Msa0877530:intron | 50.0% |
| ACAGGCTGCGAAAACGTAAG+TGG | - | chr6_1:17003393-17003412 | Msa0877530:intron | 50.0% | |
| AGGGGGGGTAGAAGAAAACA+TGG | + | chr6_1:17003891-17003910 | None:intergenic | 50.0% | |
| TGTTGAGGCATGAGCAAAGG+GGG | + | chr6_1:17003908-17003927 | None:intergenic | 50.0% | |
| !! | TGTGCGCTTTGAAGCCTTAG+AGG | - | chr6_1:17003932-17003951 | Msa0877530:intron | 50.0% |
| !! | AGGCTGCTGCCGTTGTTTTA+GGG | - | chr6_1:17003989-17004008 | Msa0877530:intron | 50.0% |
| !!! | TGCTGCCGTTGTTTTAGGGA+GGG | - | chr6_1:17003993-17004012 | Msa0877530:intron | 50.0% |
| GACGCCATAGTTCCTTGTCA+TGG | + | chr6_1:17004281-17004300 | None:intergenic | 50.0% | |
| CAAGGAACTATGGCGTCGTT+TGG | - | chr6_1:17004284-17004303 | Msa0877530:intron | 50.0% | |
| TGGAGTTCATGACGAGGCAA+AGG | - | chr6_1:17004732-17004751 | Msa0877530:intron | 50.0% | |
| TGATTGTGTGCAGGTTCCAG+AGG | - | chr6_1:17005107-17005126 | Msa0877530:intron | 50.0% | |
| ! | GCTTCTTCTAGAAGCTCCTC+TGG | + | chr6_1:17005126-17005145 | None:intergenic | 50.0% |
| TCCACTTGTCCATGCCAGTA+TGG | - | chr6_1:17005409-17005428 | Msa0877530:CDS | 50.0% | |
| CAATCGTAGCCATACTGGCA+TGG | + | chr6_1:17005421-17005440 | None:intergenic | 50.0% | |
| CATGCCAGTATGGCTACGAT+TGG | - | chr6_1:17005419-17005438 | Msa0877530:CDS | 50.0% | |
| ATCTGGAAAACGCGGCCATC+AGG | + | chr6_1:17000502-17000521 | None:intergenic | 55.0% | |
| ! | CGTTCATCGCCACTCTGGAA+TGG | - | chr6_1:17001749-17001768 | Msa0877530:intron | 55.0% |
| AGTTGCTTCGGACTTAGCCC+TGG | + | chr6_1:17002404-17002423 | None:intergenic | 55.0% | |
| !! | CAAGGAACTTGCTGATCGCG+TGG | - | chr6_1:17003000-17003019 | Msa0877530:intron | 55.0% |
| ! | TGTGCAGAGGTGCACGTAAC+TGG | + | chr6_1:17003026-17003045 | None:intergenic | 55.0% |
| TGTGTTCCTCAGCCCTTCTC+TGG | - | chr6_1:17003859-17003878 | Msa0877530:intron | 55.0% | |
| ACTGTACCAGAGAAGGGCTG+AGG | + | chr6_1:17003868-17003887 | None:intergenic | 55.0% | |
| TTGAGGCATGAGCAAAGGGG+GGG | + | chr6_1:17003906-17003925 | None:intergenic | 55.0% | |
| GTTGAGGCATGAGCAAAGGG+GGG | + | chr6_1:17003907-17003926 | None:intergenic | 55.0% | |
| ACAACGGCAGCAGCCTCATA+CGG | + | chr6_1:17003985-17004004 | None:intergenic | 55.0% | |
| !! | GAGGCTGCTGCCGTTGTTTT+AGG | - | chr6_1:17003988-17004007 | Msa0877530:intron | 55.0% |
| !!! | CTGCTGCCGTTGTTTTAGGG+AGG | - | chr6_1:17003992-17004011 | Msa0877530:intron | 55.0% |
| GCCATACTGGCATGGACAAG+TGG | + | chr6_1:17005413-17005432 | None:intergenic | 55.0% | |
| AACGCGGCCATCAGGAGAGA+AGG | + | chr6_1:17000494-17000513 | None:intergenic | 60.0% | |
| GCTGCTTAGTGCATTGCCCC+AGG | + | chr6_1:17002172-17002191 | None:intergenic | 60.0% | |
| TGCAATCGGGAAGGGCAGAC+AGG | - | chr6_1:17003375-17003394 | Msa0877530:intron | 60.0% | |
| CAACGGCAGCAGCCTCATAC+GGG | + | chr6_1:17003984-17004003 | None:intergenic | 60.0% | |
| GCGGATATGACCTGCCGACA+AGG | - | chr6_1:17004584-17004603 | Msa0877530:intron | 60.0% | |
| CACGCCGTTCATCGCCACTC+TGG | - | chr6_1:17001744-17001763 | Msa0877530:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 17000356 | 17005553 | 17000356 | ID=Msa0877530;Name=Msa0877530 |
| chr6_1 | mRNA | 17000356 | 17005553 | 17000356 | ID=Msa0877530-mRNA-1;Parent=Msa0877530;Name=Msa0877530-mRNA-1;_AED=0.05;_eAED=0.05;_QI=95|1|1|1|1|1|10|362|249 |
| chr6_1 | exon | 17000356 | 17000789 | 17000356 | ID=Msa0877530-mRNA-1:exon:4756;Parent=Msa0877530-mRNA-1 |
| chr6_1 | exon | 17001093 | 17001183 | 17001093 | ID=Msa0877530-mRNA-1:exon:4755;Parent=Msa0877530-mRNA-1 |
| chr6_1 | exon | 17001282 | 17001347 | 17001282 | ID=Msa0877530-mRNA-1:exon:4754;Parent=Msa0877530-mRNA-1 |
| chr6_1 | exon | 17002502 | 17002548 | 17002502 | ID=Msa0877530-mRNA-1:exon:4753;Parent=Msa0877530-mRNA-1 |
| chr6_1 | exon | 17002671 | 17002755 | 17002671 | ID=Msa0877530-mRNA-1:exon:4752;Parent=Msa0877530-mRNA-1 |
| chr6_1 | exon | 17002847 | 17002933 | 17002847 | ID=Msa0877530-mRNA-1:exon:4751;Parent=Msa0877530-mRNA-1 |
| chr6_1 | exon | 17003475 | 17003548 | 17003475 | ID=Msa0877530-mRNA-1:exon:4750;Parent=Msa0877530-mRNA-1 |
| chr6_1 | exon | 17004139 | 17004222 | 17004139 | ID=Msa0877530-mRNA-1:exon:4749;Parent=Msa0877530-mRNA-1 |
| chr6_1 | exon | 17004320 | 17004359 | 17004320 | ID=Msa0877530-mRNA-1:exon:4748;Parent=Msa0877530-mRNA-1 |
| chr6_1 | exon | 17005355 | 17005553 | 17005355 | ID=Msa0877530-mRNA-1:exon:4747;Parent=Msa0877530-mRNA-1 |
| chr6_1 | five_prime_UTR | 17005459 | 17005553 | 17005459 | ID=Msa0877530-mRNA-1:five_prime_utr;Parent=Msa0877530-mRNA-1 |
| chr6_1 | CDS | 17005355 | 17005458 | 17005355 | ID=Msa0877530-mRNA-1:cds;Parent=Msa0877530-mRNA-1 |
| chr6_1 | CDS | 17004320 | 17004359 | 17004320 | ID=Msa0877530-mRNA-1:cds;Parent=Msa0877530-mRNA-1 |
| chr6_1 | CDS | 17004139 | 17004222 | 17004139 | ID=Msa0877530-mRNA-1:cds;Parent=Msa0877530-mRNA-1 |
| chr6_1 | CDS | 17003475 | 17003548 | 17003475 | ID=Msa0877530-mRNA-1:cds;Parent=Msa0877530-mRNA-1 |
| chr6_1 | CDS | 17002847 | 17002933 | 17002847 | ID=Msa0877530-mRNA-1:cds;Parent=Msa0877530-mRNA-1 |
| chr6_1 | CDS | 17002671 | 17002755 | 17002671 | ID=Msa0877530-mRNA-1:cds;Parent=Msa0877530-mRNA-1 |
| chr6_1 | CDS | 17002502 | 17002548 | 17002502 | ID=Msa0877530-mRNA-1:cds;Parent=Msa0877530-mRNA-1 |
| chr6_1 | CDS | 17001282 | 17001347 | 17001282 | ID=Msa0877530-mRNA-1:cds;Parent=Msa0877530-mRNA-1 |
| chr6_1 | CDS | 17001093 | 17001183 | 17001093 | ID=Msa0877530-mRNA-1:cds;Parent=Msa0877530-mRNA-1 |
| chr6_1 | CDS | 17000718 | 17000789 | 17000718 | ID=Msa0877530-mRNA-1:cds;Parent=Msa0877530-mRNA-1 |
| chr6_1 | three_prime_UTR | 17000356 | 17000717 | 17000356 | ID=Msa0877530-mRNA-1:three_prime_utr;Parent=Msa0877530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
