AlfalfaGEDB | Msa0797930

M. sativa cultivar zhongmu-4 / Msa0797930

KEGG: K20472
GO: GO:0000003 GO:0000139 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005801 GO:0005829 GO:0005886 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0008104 GO:0008150 GO:0009790 GO:0009792 GO:0009987 GO:0009994 GO:0010883 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0019953 GO:0022412 GO:0022414 GO:0030117 GO:0030120 GO:0030126 GO:0030133 GO:0030135 GO:0030137 GO:0030154 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0032991 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045184 GO:0046907 GO:0048193 GO:0048468 GO:0048475 GO:0048477 GO:0048599 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0098827 GO:1901998 GO:1905952
PFAM: PF10584.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0797930	RHN58831.1	69.181	623	145	3	10	593	384	998	0.0	831

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0797930	sp\|P52427\|PSA4_SPIOL	90.000	250	25	0	596	845	1	250	5.98e-164	480

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0797930	A0A396I1W5	69.181	623	145	3	10	593	384	998	0.0	831

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0797930	0.831546	1.569775e-55	-8.615850e-47
Msa0002560	Msa0797930	0.801401	9.161298e-49	-8.615850e-47
Msa0002680	Msa0797930	0.823851	1.108614e-53	-8.615850e-47
Msa0002710	Msa0797930	0.812408	4.304701e-51	-8.615850e-47
Msa0003720	Msa0797930	0.823320	1.475510e-53	-8.615850e-47
Msa0004540	Msa0797930	0.809521	1.816290e-50	-8.615850e-47
Msa0006110	Msa0797930	0.809405	1.923159e-50	-8.615850e-47
Msa0010770	Msa0797930	0.813289	2.759569e-51	-8.615850e-47
Msa0012940	Msa0797930	0.820924	5.303530e-53	-8.615850e-47
Msa0018620	Msa0797930	0.802890	4.525860e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0797930	MtrunA17_Chr4g0006661	69.181	623	145	3	10	593	384	998	0.0	831
Msa0797930	MtrunA17_Chr5g0406461	68.860	623	146	3	10	593	327	940	0.0	829
Msa0797930	MtrunA17_Chr3g0110601	68.893	614	151	4	10	593	384	987	0.0	820
Msa0797930	MtrunA17_Chr1g0158081	68.897	553	127	2	80	593	1	547	0.0	756
Msa0797930	MtrunA17_Chr6g0475041	66.529	484	113	5	10	454	379	852	0.0	574
Msa0797930	MtrunA17_Chr7g0243311	98.000	250	5	0	596	845	1	250	3.78e-177	511
Msa0797930	MtrunA17_Chr5g0401801	91.600	250	0	1	596	845	1	229	3.05e-160	467
Msa0797930	MtrunA17_Chr2g0329501	47.602	563	232	10	80	593	1	549	1.92e-157	483
Msa0797930	MtrunA17_Chr2g0293921	56.863	255	65	2	169	384	1	249	6.36e-82	264
Msa0797930	MtrunA17_Chr3g0111161	41.813	342	151	8	121	419	40	376	5.06e-71	240

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0797930	AT3G22110.1	90.400	250	24	0	596	845	1	250	5.62e-163	475
Msa0797930	AT4G15165.1	72.000	250	28	1	596	845	1	208	4.09e-118	358
Msa0797930	AT3G14290.1	42.149	242	122	7	599	834	7	236	1.47e-52	184
Msa0797930	AT1G53850.1	41.322	242	124	7	599	834	7	236	7.01e-52	182
Msa0797930	AT1G53850.2	41.322	242	124	7	599	834	7	236	7.01e-52	182
Msa0797930	AT5G66140.1	42.000	200	113	3	599	797	3	200	4.36e-47	169
Msa0797930	AT3G51260.2	42.500	200	112	3	599	797	3	200	6.21e-47	168
Msa0797930	AT3G51260.1	42.500	200	112	3	599	797	3	200	7.24e-47	168
Msa0797930	AT1G79210.1	35.593	236	145	5	599	834	5	233	2.20e-41	152
Msa0797930	AT1G79210.2	35.593	236	145	5	599	834	5	233	2.20e-41	152

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Find 295 sgRNAs with CRISPR-Local

Find 650 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGATATCCAGAGCCTGA+TGG	0.585720	5_3:-10301434	Msa0797930:CDS
AAATTGTGTGTAACCTTGCT+TGG	0.550671	5_3:+10295163	None:intergenic
AACAGCTTAGTCAAGTTCTC+TGG	0.381164	5_3:+10294825	None:intergenic
AACAGGAAAGAGACTCCAAA+CGG	0.582222	5_3:+10295128	None:intergenic
AACCTGGGAGGCAATGGATT+AGG	0.450755	5_3:+10301808	None:intergenic
AACTATGGCGGTTGGAAAGC+CGG	0.449553	5_3:-10295050	Msa0797930:CDS
AAGCAAGGTTACACACAATT+TGG	0.305332	5_3:-10295161	Msa0797930:CDS
AAGCTCAAGTTCATGAGGAA+TGG	0.562004	5_3:-10300441	Msa0797930:CDS
AAGCTTATCCGAGGTAAGAC+TGG	0.507716	5_3:+10294905	None:intergenic
AAGGATGGGGTTGTTCTGGT+TGG	0.521102	5_3:-10295395	Msa0797930:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGTTGGAAAAGAAGGTTT+GGG	+	chr5_3:10294250-10294269	None:intergenic	30.0%
TATTGTTGGAAAAGAAGGTT+TGG	+	chr5_3:10294251-10294270	None:intergenic	30.0%
ATTGGTATTGTTGGAAAAGA+AGG	+	chr5_3:10294256-10294275	None:intergenic	30.0%
CTTAACATGTGAATTTCATC+AGG	-	chr5_3:10294378-10294397	Msa0797930:intron	30.0%
TGTGAAAGATCTGATAGAAA+AGG	-	chr5_3:10294447-10294466	Msa0797930:intron	30.0%
GTGAAAGATCTGATAGAAAA+GGG	-	chr5_3:10294448-10294467	Msa0797930:intron	30.0%
ATATGATTGAAGCCTTTGAA+AGG	-	chr5_3:10294539-10294558	Msa0797930:intron	30.0%
ATGGTTGCATTGTATTTGTA+GGG	+	chr5_3:10294895-10294914	None:intergenic	30.0%
TGATATGATATCCAACGTAT+TGG	-	chr5_3:10295418-10295437	Msa0797930:CDS	30.0%
AAGTGACACTTAAAAAGGAA+CGG	+	chr5_3:10296106-10296125	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	10294037	10302139	10294037	ID=Msa0797930;Name=Msa0797930
chr5_3	mRNA	10294037	10302139	10294037	ID=Msa0797930-mRNA-1;Parent=Msa0797930;Name=Msa0797930-mRNA-1;_AED=0.56;_eAED=0.56;_QI=0\|0\|0\|0.25\|1\|1\|4\|0\|891
chr5_3	exon	10301249	10302139	10301249	ID=Msa0797930-mRNA-1:exon:4370;Parent=Msa0797930-mRNA-1
chr5_3	exon	10300260	10301147	10300260	ID=Msa0797930-mRNA-1:exon:4369;Parent=Msa0797930-mRNA-1
chr5_3	exon	10294786	10295540	10294786	ID=Msa0797930-mRNA-1:exon:4368;Parent=Msa0797930-mRNA-1
chr5_3	exon	10294037	10294178	10294037	ID=Msa0797930-mRNA-1:exon:4367;Parent=Msa0797930-mRNA-1
chr5_3	CDS	10301249	10302139	10301249	ID=Msa0797930-mRNA-1:cds;Parent=Msa0797930-mRNA-1
chr5_3	CDS	10300260	10301147	10300260	ID=Msa0797930-mRNA-1:cds;Parent=Msa0797930-mRNA-1
chr5_3	CDS	10294786	10295540	10294786	ID=Msa0797930-mRNA-1:cds;Parent=Msa0797930-mRNA-1
chr5_3	CDS	10294037	10294178	10294037	ID=Msa0797930-mRNA-1:cds;Parent=Msa0797930-mRNA-1

Gene Sequence

>Msa0797930

ATGGTATCTGGTAACCCATCTGCAGCTGCTACGAAATTACCTCTGCCTTATCACTACATGCAGTACTCTCAACATCCTTTCTTCCCACCATTCTACCAACAATATCCTCTGCCACTGGGTCAACCACCAATGCCCGTCAATGCCATTCCTCAACAAGTACAACAACAGCCTCCTGCTCAACAGCAACGGCAGCAACAACAGGGTCCCCGACCCAAACCTTCTTTTCCAACAATACCAATGCGGTATGGTGAGCTGCTCCCAACTCTATTAGCTAAGGGACACTGTGTCACCAGGCCAGGCAAACCTCCACCTAATCCATTGCCTCCCAGGTTCCGTCAGGACTTAACATGTGAATTTCATCAGGGTGCTCAAGGCCATGATATTGAAGGTTGCTTTGCTCTGAAATATATTGTGAAAGATCTGATAGAAAAGGGACGTTTGACTTTTGAGAACAGTGTTCCTCATGTCCTCGACAACCCGCTTCCAAACCATGCTGCTGTTAATATGATTGAAGCCTTTGAAAGGATTCCCGTTCCTCGAAAGGATCCCATGTTGGATGTCCGCAATGTCGTTACTCCCTTGGTACCATTACATGTCAAACTTTGCCAGGCTTCTCTGTTCAAACATGATCATGCTTCTTGTTCAGAATGTCTGCAGAATCCTATGGGCTGTTGTGTGGTGCAAAATGATATCCAGAGCCTGATGGATGACAAGTACTTGATTACCAGTGATGTATGTGTGATTGTACCAGTGTTCCATGACTCTCCTGTTGGAAGTGTATCTCAGGCAAAGAATGTTGAACCTTTGGTGATCAGGTTACCTGGTCCGGTATCTTATACCTCTACCAAAGCAATTCCCTACAAATACAATGCAACCATGGTTGAAAACGGGGTGGTCACACCCATTGCCACGGTAACTCCACCAGTTGCTCCTCCTGTTGACAAGAACACTGGCCCAGCAGGCCAATCTATCGAAGAGTCCAATCTGGACGAAATCCTGAGACTTATCAAGAAAAGTGACTATAAGATTGTTGACCAGCTGCTACAGACTCCTGCAAAGATATCCATCCTGTCTCTTCTCATGAGCTCTGAGGCTCATAGGAAAGTGTTAATGAAGATACTGGAGCAAGCTTATGTTGACCACGAAGTCTCTGTGGATCAATTTGATGGGATAGTGAGTAATATTACTGCCTGCAACAACTTGGGGTTCGGTGACGATGAGCTCCCCGAAGCAGGGAAGCACCACAACTTGGCTCTACATATCTCGGTGCACTGTGGGTCTGATATGATATCCAACGTATTGGTGGACACTGGATCGTCTCTGAATGTAATGCCTGAATCCACACTAAGGCAATTGAGCCATCATGGAATTTCTCTGAGGGGTAGCAGCTATCTGGTTAAAGCTTTTGATGAATCCCGCAAGGATGTTCTCGGGGAAGTGGACTTGCCAATCACCGTTGGTCCCGAGACATTTAAAATAACTTTCCAAGTCATGGATATCAATGCCTCTTACAGCTGTCTCCTCGGAAGACCATGGATCCATGACGCTGGAGCGGTAACTTCCACTTTGCATCAGAAGCTCAAGTTCATGAGGAATGGTAAGATTGTCACTGTGCATGGTGAGGAAGCATATCTAGTTAGCCAGGTATCATCGTTCTCTTGTGTTGAAGCAGGGTCCGCAGAAGGAACGTCGTTTCAAGGCTTGACTGTCGAAGGTGCAGAGCCCCGGAGGGCTGGTGCTAGCATGGCCTCACTGAGAGATGCCCAGAAGGCTGTTCAAATCAAAATGTCTCGAAGATATGATAGCCGTACAACAATCTTCTCTCCTGAAGGACGTCTTTACCAAGTGGAGTATGCAATGGAGGCCATTGGAAATGCTGGTACTGCCATAGGAATCTTGTCGAAGGATGGGGTTGTTCTGGTTGGCGAAAAGAAGGTGACATCCAAGCTTCTGCAAACCTCAACATCAACTGAGAAAATGTACAAGATTGATGATCATGTTGCATGTGCTGTTGCTGGGATTATGTCCGATGCCAACATCCTAATCAACACTGCTAGGATCCAAGCACAACGTTACTCATTTGCTTACCAAGAGCCAATGCCTGTTGAACAGTTGGTTCAATCTCTTTGTGATACCAAGCAAGGTTACACACAATTTGGTGGTCTCCGTCCGTTTGGAGTCTCTTTCCTGTTTGCAGGATGGGACAAAAACTTCGGCTTTCAACTTTACATGAGCGATCCTAGTGGAAACTATGGCGGTTGGAAAGCCGGTGCTATTGGTGCCAACAACCAGGCAGCACAATCAATTCTAAAACAGGACTACAAGGATGATATCACAAGGGAAGAAGCAGTTAACCTTGCACTGAAAGTTCTGAGCAAAACTATGGACAGCACCAGTCTTACCTCGGATAAGCTTGAACTTGCAGAGGTTTTTCTTGCACCATCTGGAAAGGTCAAGTATCAAGTTTGCTCCCCAGAGAACTTGACTAAGCTGTTGGTGAAGTCTGGGGTGACCCAACCAGCAACAGAGACTGCGTGTATACCTCTCCCACCTCCATCTTCACCTACTTCACCAGAATATGGCATCCTCTGCCACTCCTCCCCTCAACCTCCATCACTTGCCTCATATCTTCGTTTTCTTGCTTTGCAGCTCAACTATCCAATACTATGTTTTTAG

Protein sequence

>Msa0797930

MVSGNPSAAATKLPLPYHYMQYSQHPFFPPFYQQYPLPLGQPPMPVNAIPQQVQQQPPAQQQRQQQQGPRPKPSFPTIPMRYGELLPTLLAKGHCVTRPGKPPPNPLPPRFRQDLTCEFHQGAQGHDIEGCFALKYIVKDLIEKGRLTFENSVPHVLDNPLPNHAAVNMIEAFERIPVPRKDPMLDVRNVVTPLVPLHVKLCQASLFKHDHASCSECLQNPMGCCVVQNDIQSLMDDKYLITSDVCVIVPVFHDSPVGSVSQAKNVEPLVIRLPGPVSYTSTKAIPYKYNATMVENGVVTPIATVTPPVAPPVDKNTGPAGQSIEESNLDEILRLIKKSDYKIVDQLLQTPAKISILSLLMSSEAHRKVLMKILEQAYVDHEVSVDQFDGIVSNITACNNLGFGDDELPEAGKHHNLALHISVHCGSDMISNVLVDTGSSLNVMPESTLRQLSHHGISLRGSSYLVKAFDESRKDVLGEVDLPITVGPETFKITFQVMDINASYSCLLGRPWIHDAGAVTSTLHQKLKFMRNGKIVTVHGEEAYLVSQVSSFSCVEAGSAEGTSFQGLTVEGAEPRRAGASMASLRDAQKAVQIKMSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGTAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARIQAQRYSFAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNFGFQLYMSDPSGNYGGWKAGAIGANNQAAQSILKQDYKDDITREEAVNLALKVLSKTMDSTSLTSDKLELAEVFLAPSGKVKYQVCSPENLTKLLVKSGVTQPATETACIPLPPPSSPTSPEYGILCHSSPQPPSLASYLRFLALQLNYPILCF*