AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0880960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880960 MtrunA17_Chr1g0212971 99.157 593 5 0 1 593 1 593 0.0 1201
Msa0880960 MtrunA17_Chr7g0263471 73.042 549 141 4 46 593 40 582 0.0 791
Msa0880960 MtrunA17_Chr2g0327711 46.209 554 253 9 61 593 15 544 2.55e-147 436
Msa0880960 MtrunA17_Chr4g0030551 47.126 522 237 8 58 563 16 514 2.40e-145 431
Msa0880960 MtrunA17_Chr7g0276681 45.421 546 255 7 61 593 31 546 7.71e-137 409
Msa0880960 MtrunA17_Chr1g0161231 45.436 482 246 7 127 593 52 531 5.60e-128 386
Msa0880960 MtrunA17_Chr7g0263421 42.620 542 273 7 66 593 3 520 2.95e-125 379
Msa0880960 MtrunA17_Chr8g0391711 43.659 481 256 4 127 593 59 538 6.24e-125 378
Msa0880960 MtrunA17_Chr2g0331191 22.951 610 356 14 4 567 69 610 8.96e-27 115
Msa0880960 MtrunA17_Chr2g0331191 25.403 248 184 1 96 343 1 247 1.05e-20 96.3
Msa0880960 MtrunA17_Chr3g0136651 22.707 458 298 12 138 577 8 427 3.84e-25 108
Msa0880960 MtrunA17_Chr2g0331201 28.896 308 202 5 74 367 37 341 1.77e-21 99.0
Msa0880960 MtrunA17_Chr2g0331201 26.949 449 250 15 130 522 137 563 1.68e-20 95.9
Msa0880960 MtrunA17_Chr2g0331201 26.471 238 173 2 107 343 11 247 4.28e-19 91.3
Msa0880960 MtrunA17_Chr8g0361991 25.469 373 214 10 76 445 10 321 1.60e-19 91.7
Msa0880960 MtrunA17_Chr2g0328031 31.707 205 121 4 134 322 14 215 1.99e-19 91.3
Msa0880960 MtrunA17_Chr8g0370361 26.756 299 178 6 169 452 46 318 5.30e-19 90.1
Msa0880960 MtrunA17_Chr8g0367671 23.786 412 245 12 169 543 47 426 1.21e-18 89.0
Msa0880960 MtrunA17_Chr1g0178581 24.565 460 262 15 138 556 15 430 3.83e-18 87.4
Msa0880960 MtrunA17_Chr7g0233331 24.611 321 206 6 138 445 12 309 2.26e-16 81.6
Msa0880960 MtrunA17_Chr5g0439361 25.908 413 253 13 169 562 23 401 3.14e-16 81.3
Msa0880960 MtrunA17_Chr5g0439351 27.128 376 238 11 169 533 338 688 3.67e-16 82.0
Msa0880960 MtrunA17_Chr5g0439161 24.319 477 310 14 128 562 207 674 6.51e-16 81.3
Msa0880960 MtrunA17_Chr8g0369921 23.653 427 245 13 169 556 45 429 7.85e-16 80.1
Msa0880960 MtrunA17_Chr4g0031491 30.288 208 124 7 132 322 13 216 9.13e-16 80.1
Msa0880960 MtrunA17_Chr8g0368621 24.315 292 180 6 169 445 42 307 2.74e-15 77.4
Msa0880960 MtrunA17_Chr3g0100301 24.552 391 245 14 189 542 15 392 2.94e-15 78.2
Msa0880960 MtrunA17_Chr7g0262731 27.917 240 158 6 135 361 9 246 3.95e-15 78.6
Msa0880960 MtrunA17_Chr7g0221531 23.099 355 208 9 169 488 44 368 1.99e-14 75.5
Msa0880960 MtrunA17_Chr8g0354071 23.684 342 198 10 177 480 2 318 2.79e-14 75.1
Msa0880960 MtrunA17_Chr8g0364031 25.000 336 200 10 138 453 13 316 5.79e-14 74.3
Msa0880960 MtrunA17_Chr5g0418551 33.708 178 111 5 132 306 20 193 1.02e-13 71.2
Msa0880960 MtrunA17_Chr7g0263431 71.429 49 13 1 274 321 1 49 1.26e-13 65.5
Msa0880960 MtrunA17_Chr3g0093531 23.684 342 198 10 177 480 2 318 1.90e-13 72.4
Msa0880960 MtrunA17_Chr3g0083331 24.917 301 178 9 169 445 45 321 2.71e-13 72.4
Msa0880960 MtrunA17_Chr8g0353311 21.809 376 234 9 169 509 49 399 4.61e-13 71.6
Msa0880960 MtrunA17_Chr8g0376971 26.183 317 194 9 72 352 77 389 6.24e-13 71.6
Msa0880960 MtrunA17_Chr1g0211241 29.952 207 137 5 120 322 120 322 1.10e-12 70.9
Msa0880960 MtrunA17_Chr3g0122941 28.342 187 125 3 131 309 105 290 1.56e-12 70.5
Msa0880960 MtrunA17_Chr3g0122941 27.208 283 173 9 100 355 108 384 2.92e-12 69.7
Msa0880960 MtrunA17_Chr6g0461061 27.935 247 158 7 90 323 125 364 1.63e-11 67.0
Msa0880960 MtrunA17_Chr5g0410201 25.284 352 185 11 213 544 7 300 1.71e-11 65.9
Msa0880960 MtrunA17_Chr4g0064931 30.319 188 127 4 135 322 40 223 2.05e-11 67.0
Msa0880960 MtrunA17_Chr7g0262761 27.922 154 100 3 169 312 47 199 2.36e-11 63.5
Msa0880960 MtrunA17_Chr4g0073161 30.392 204 98 6 128 294 9 205 3.05e-11 66.2
Msa0880960 MtrunA17_Chr1g0196261 28.947 228 134 8 114 317 198 421 5.70e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880960 AT3G12360.1 80.684 585 104 4 14 593 10 590 0.0 954
Msa0880960 AT3G12360.2 80.895 581 102 4 18 593 2 578 0.0 950
Msa0880960 AT3G09550.1 71.502 586 148 3 24 593 25 607 0.0 833
Msa0880960 AT3G09550.3 71.502 586 148 3 24 593 25 607 0.0 833
Msa0880960 AT3G09550.2 71.502 586 148 3 24 593 32 614 0.0 832
Msa0880960 AT2G31820.1 43.534 549 271 7 60 593 138 662 8.01e-138 416
Msa0880960 AT1G05640.1 44.404 554 270 7 56 593 96 627 7.62e-136 410
Msa0880960 AT5G60070.1 46.595 558 244 13 61 593 20 548 3.40e-135 405
Msa0880960 AT2G01680.1 43.110 508 273 8 99 593 28 532 2.25e-129 390
Msa0880960 AT1G07710.2 44.565 552 264 5 61 593 15 543 2.44e-129 390
Msa0880960 AT1G07710.1 44.565 552 264 5 61 593 15 543 2.44e-129 390
Msa0880960 AT5G02620.4 43.774 514 248 7 61 556 5 495 4.25e-124 376
Msa0880960 AT5G02620.1 43.774 514 248 7 61 556 5 495 4.25e-124 376
Msa0880960 AT5G02620.3 43.774 514 248 7 61 556 5 495 4.25e-124 376
Msa0880960 AT5G02620.5 41.899 537 248 8 61 556 5 518 1.15e-118 363
Msa0880960 AT5G02620.2 41.899 537 248 8 61 556 5 518 1.15e-118 363
Msa0880960 AT1G10340.1 25.202 496 309 12 111 552 51 538 2.25e-34 138
Msa0880960 AT5G54710.1 27.308 520 284 17 68 552 97 557 1.49e-33 135
Msa0880960 AT5G54710.2 27.308 520 284 17 68 552 142 602 2.33e-33 135
Msa0880960 AT1G10340.2 24.593 492 313 11 111 552 51 534 2.38e-33 135
Msa0880960 AT1G34050.1 26.145 524 294 15 108 554 28 535 6.31e-33 134
Msa0880960 AT2G24600.3 26.892 502 290 18 72 538 70 529 3.55e-32 131
Msa0880960 AT2G24600.4 26.892 502 290 18 72 538 70 529 3.55e-32 131
Msa0880960 AT4G03500.2 26.047 549 280 17 58 522 54 560 2.29e-30 126
Msa0880960 AT4G03500.3 26.047 549 280 17 58 522 54 560 2.29e-30 126
Msa0880960 AT4G03500.1 26.047 549 280 17 58 522 77 583 2.43e-30 126
Msa0880960 AT1G03670.1 25.581 516 328 9 74 562 107 593 2.56e-26 114
Msa0880960 AT4G03490.3 27.674 430 267 12 133 551 180 576 5.97e-25 110
Msa0880960 AT4G03490.5 27.830 424 262 12 133 545 170 560 7.94e-25 109
Msa0880960 AT4G03490.4 27.830 424 262 12 133 545 180 570 8.14e-25 109
Msa0880960 AT4G03460.2 26.406 409 256 8 128 522 158 535 8.35e-24 106
Msa0880960 AT4G03460.1 26.406 409 256 8 128 522 190 567 9.03e-24 106
Msa0880960 AT4G03490.2 24.915 586 332 18 65 574 9 562 1.03e-23 106
Msa0880960 AT5G50140.1 22.913 515 297 16 126 563 22 513 1.05e-23 105
Msa0880960 AT4G03490.1 25.277 542 318 15 65 551 19 528 2.42e-23 105
Msa0880960 AT5G54700.2 28.435 313 159 9 223 523 20 279 1.39e-22 99.8
Msa0880960 AT4G10720.1 24.096 415 258 12 169 559 40 421 3.32e-22 100
Msa0880960 AT5G54700.1 27.809 356 182 12 202 523 2 316 6.75e-22 99.8
Msa0880960 AT4G10720.2 25.076 327 210 6 169 477 40 349 1.96e-21 97.4
Msa0880960 AT4G14390.2 24.722 449 281 11 128 556 226 637 2.16e-20 95.9
Msa0880960 AT4G14390.4 24.722 449 281 11 128 556 245 656 2.63e-20 95.5
Msa0880960 AT4G14390.1 24.889 450 280 12 128 556 245 657 2.98e-20 95.5
Msa0880960 AT4G03480.1 26.076 395 232 9 118 482 295 659 1.57e-19 93.2
Msa0880960 AT4G03480.2 26.076 395 232 9 118 482 292 656 1.65e-19 93.2
Msa0880960 AT4G05040.3 28.736 348 199 9 118 447 211 527 9.01e-19 90.5
Msa0880960 AT4G05040.2 28.736 348 199 9 118 447 211 527 9.01e-19 90.5
Msa0880960 AT4G05040.5 28.736 348 199 9 118 447 211 527 9.01e-19 90.5
Msa0880960 AT4G05040.4 28.736 348 199 9 118 447 211 527 9.01e-19 90.5
Msa0880960 AT4G05040.1 28.736 348 199 9 118 447 211 527 9.01e-19 90.5
Msa0880960 AT4G05040.6 28.736 348 199 9 118 447 211 527 9.01e-19 90.5
Msa0880960 AT4G05040.7 28.736 348 199 9 118 447 211 527 9.01e-19 90.5
Msa0880960 AT5G15500.2 23.427 461 288 15 130 559 1 427 2.70e-18 88.2
Msa0880960 AT2G24600.2 26.420 405 232 14 72 450 70 434 1.75e-17 86.3
Msa0880960 AT2G24600.1 26.420 405 232 14 72 450 70 434 1.75e-17 86.3
Msa0880960 AT4G03450.2 24.505 555 306 17 58 528 45 570 1.81e-17 86.7
Msa0880960 AT5G51160.1 25.000 352 198 8 157 478 38 353 2.38e-17 85.5
Msa0880960 AT4G03450.1 24.505 555 306 17 58 528 45 570 5.28e-17 85.1
Msa0880960 AT4G03470.1 26.044 503 294 18 77 542 157 618 1.34e-16 84.0
Msa0880960 AT3G04140.1 27.622 286 160 8 100 342 105 386 2.92e-16 82.8
Msa0880960 AT1G14500.1 22.769 325 215 5 169 475 40 346 3.84e-15 78.6
Msa0880960 AT2G03430.1 34.659 176 106 5 135 306 16 186 8.50e-15 74.7
Msa0880960 AT4G14390.3 26.748 329 195 8 128 443 226 521 4.92e-13 72.4
Msa0880960 AT5G54620.1 29.570 186 119 2 169 342 40 225 8.08e-13 71.2
Msa0880960 AT5G54610.1 27.717 184 123 2 169 342 40 223 8.13e-13 71.2
Msa0880960 AT3G18670.1 23.111 450 296 12 123 530 113 554 1.09e-12 71.2
Msa0880960 AT2G28840.1 27.273 209 129 7 132 322 12 215 2.01e-12 70.1
Msa0880960 AT4G03440.1 23.126 467 308 12 104 550 258 693 3.95e-12 69.7
Msa0880960 AT4G03440.2 23.126 467 308 12 104 550 251 686 4.36e-12 69.7
Msa0880960 AT4G03440.3 23.126 467 308 12 104 550 251 686 4.36e-12 69.7
Msa0880960 AT4G14400.2 23.242 512 310 20 75 538 71 547 4.01e-11 66.2
Msa0880960 AT4G14400.3 23.242 512 310 20 75 538 71 547 4.01e-11 66.2
Msa0880960 AT3G18670.2 23.684 304 183 7 236 530 346 609 4.70e-11 66.2
Msa0880960 AT4G14400.1 23.242 512 310 20 75 538 137 613 5.68e-11 65.9

Find 172 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTGCATATGGCTGTAAA+AGG 0.222840 6_1:-27840896 Msa0880960:CDS
TTATCCTTTCCAACGTAATT+TGG 0.223179 6_1:+27839251 None:intergenic
TGATATTGATTCTCAGATAA+TGG 0.227356 6_1:-27842183 Msa0880960:CDS
TAAGCTGCTGTTGTTGTTAT+AGG 0.245673 6_1:-27839043 Msa0880960:three_prime_UTR
AAGAATCATAATAATAATTT+AGG 0.249295 6_1:+27842649 None:intergenic
GTGGAGTTTCCTCAGCTCTT+TGG 0.250605 6_1:+27839826 None:intergenic
GTTATGCTTCCTGACAAATT+TGG 0.259995 6_1:-27840824 Msa0880960:CDS
GAAAGGAAAGAGGGAGGAAA+TGG 0.261658 6_1:+27842767 None:intergenic
GAACGAGTGGGCTGCAATTC+TGG 0.267500 6_1:-27839468 Msa0880960:CDS
ACCTCCAATTTCAACCTTCC+AGG 0.283929 6_1:-27842565 Msa0880960:intron
ACTCAAAGAGATTCAGAAAA+AGG 0.285730 6_1:-27842428 Msa0880960:CDS
AAGGACATCCTCTCTCGATA+TGG 0.290107 6_1:-27839977 Msa0880960:CDS
CCAACCTGGAAGGTTGAAAT+TGG 0.303178 6_1:+27842561 None:intergenic
GTTATAGGATCATAACAAAT+TGG 0.307029 6_1:-27839028 Msa0880960:three_prime_UTR
TTCATTTGCAGCCATTGTTC+AGG 0.330505 6_1:-27841179 Msa0880960:intron
CTGCTTCTCTTTCTTCCTCA+TGG 0.331730 6_1:+27839364 None:intergenic
GCAATTCTGGTTACAGTTGT+TGG 0.335512 6_1:-27839455 Msa0880960:CDS
GATATTGATTCTCAGATAAT+GGG 0.350929 6_1:-27842182 Msa0880960:CDS
AATTCGATCAACCTCGGAAT+TGG 0.351942 6_1:+27839295 None:intergenic
AAAGGAAAGAGGGAGGAAAT+GGG 0.356439 6_1:+27842768 None:intergenic
TGAAGAGTCATCAGATATAA+AGG 0.366092 6_1:-27839996 Msa0880960:CDS
TAATAAGTGTTGGCTTTGAT+TGG 0.372963 6_1:+27842708 None:intergenic
TTTGTTTACTGCTGCTGAAA+AGG 0.377535 6_1:-27842063 Msa0880960:CDS
AGATGGCGACGGAGATATTT+CGG 0.380641 6_1:+27842373 None:intergenic
GTTCAAATTACCCTTGTTAG+AGG 0.385400 6_1:-27839605 Msa0880960:CDS
GTGATAATATCCGGAGTTAT+TGG 0.388823 6_1:-27839428 Msa0880960:CDS
GTGAAACTAAAGCAGAGAAA+AGG 0.392404 6_1:-27839583 Msa0880960:CDS
TTTGCATTTAGCTGCTCGTC+CGG 0.403120 6_1:-27840996 Msa0880960:CDS
GTCAAAGGATGGCAGCTTGT+TGG 0.404723 6_1:-27841047 Msa0880960:CDS
GGGTCATCTTGATGTTGTTA+AGG 0.408314 6_1:-27842042 Msa0880960:CDS
AGAAAGAGAAGCAGCTAGCC+AGG 0.411228 6_1:-27839355 Msa0880960:CDS
AGGACATCCTCTCTCGATAT+GGG 0.415929 6_1:-27839976 Msa0880960:CDS
CACCACTGTCACCGAGTTTG+TGG 0.435710 6_1:+27839784 None:intergenic
CTCGTCGCTGCTGTTATAAG+TGG 0.455896 6_1:+27841100 None:intergenic
TCCGTCGTCCGCGACGGCGC+CGG 0.456322 6_1:-27842351 Msa0880960:CDS
ATGGGAAAGTCGTGAGAAAG+AGG 0.462631 6_1:+27842786 None:intergenic
AGGCTTTCACGATTTCTGTA+TGG 0.466846 6_1:+27840972 None:intergenic
TTGCATTTAGCTGCTCGTCC+GGG 0.469773 6_1:-27840995 Msa0880960:CDS
GCTGCTATATTCACCGTACC+TGG 0.472210 6_1:-27839734 Msa0880960:CDS
TCCTCAGTTCGTCCCTTGGT+TGG 0.473921 6_1:+27839930 None:intergenic
GAGTGGAAGGAAAGGAAAGA+GGG 0.474346 6_1:+27842758 None:intergenic
CATTTACGTTTGTGTCTGGC+AGG 0.475438 6_1:+27840074 None:intergenic
TTGTTTACTGCTGCTGAAAA+GGG 0.479987 6_1:-27842062 Msa0880960:CDS
GCTCAGCAAAGACCCTCAAT+TGG 0.481998 6_1:-27840948 Msa0880960:CDS
CTTTAGTTTCACCTCTAACA+AGG 0.482809 6_1:+27839594 None:intergenic
CCAAGCTTAAGCAAAACTAT+TGG 0.486154 6_1:-27841139 Msa0880960:CDS
GAAAAGATGAGTGGAAGGAA+AGG 0.490183 6_1:+27842750 None:intergenic
TGAGTTGGATCCACTTCTCC+TGG 0.491866 6_1:+27839337 None:intergenic
GGGGATAACGATGATGGATC+AGG 0.492044 6_1:-27839710 Msa0880960:CDS
CAGTCCTCCGAGCCAATTGA+GGG 0.492228 6_1:+27840936 None:intergenic
TAATAATAATTTAGGAAGGA+AGG 0.493048 6_1:+27842657 None:intergenic
TCCTTTCAAACTCAGGAAAA+CGG 0.494021 6_1:-27842322 Msa0880960:CDS
TGAGTGGAAGGAAAGGAAAG+AGG 0.495388 6_1:+27842757 None:intergenic
TGAAACTAAAGCAGAGAAAA+GGG 0.501105 6_1:-27839582 Msa0880960:CDS
AGGGCAAACTGCATTGCATA+TGG 0.501695 6_1:-27840906 Msa0880960:CDS
TCAGCTCTTTGGATATATTG+TGG 0.502735 6_1:+27839837 None:intergenic
GGTCATGATAGAAGAGTAGA+GGG 0.503098 6_1:+27842585 None:intergenic
ATCGTTATCCCCACCAGGTA+CGG 0.503271 6_1:+27839721 None:intergenic
TTGAGGGTCTTTGCTGAGCA+AGG 0.503619 6_1:+27840952 None:intergenic
AATGCATTTACGTTTGTGTC+TGG 0.503703 6_1:+27840070 None:intergenic
TTGGAAATTGCAAGATCCAA+TGG 0.508338 6_1:-27841028 Msa0880960:CDS
AAGTACGTGAAGCAAGTAAC+GGG 0.508570 6_1:-27842278 Msa0880960:CDS
GCTCGGAGGACTGACAAGAA+AGG 0.509842 6_1:-27840926 Msa0880960:CDS
AAAGAGAAAAGATGAGTGGA+AGG 0.510130 6_1:+27842745 None:intergenic
GACGGAGATATTTCGGAAAG+TGG 0.514348 6_1:+27842380 None:intergenic
CTCGGAGGACTGACAAGAAA+GGG 0.519611 6_1:-27840925 Msa0880960:CDS
TTCACGATTTCTGTATGGCC+CGG 0.525638 6_1:+27840977 None:intergenic
TATGCATTTGTATAAATCAC+AGG 0.525663 6_1:-27838946 Msa0880960:three_prime_UTR
GTTGGAGGAGTGATAATATC+CGG 0.527167 6_1:-27839437 Msa0880960:CDS
GCCGGCGCCGTCGCGGACGA+CGG 0.529146 6_1:+27842350 None:intergenic
CATTGCATATGGCTGTAAAA+GGG 0.531587 6_1:-27840895 Msa0880960:CDS
AAGACCAAATTACGTTGGAA+AGG 0.532286 6_1:-27839255 Msa0880960:three_prime_UTR
TGCTACAAGAAATGTCTTGG+AGG 0.533293 6_1:-27838812 Msa0880960:three_prime_UTR
GAAAGATGTTCACACACAGC+TGG 0.535788 6_1:-27839888 Msa0880960:CDS
CCTGGTGGGGATAACGATGA+TGG 0.535860 6_1:-27839716 Msa0880960:CDS
GCCATCTCCGTCGTCCGCGA+CGG 0.536247 6_1:-27842357 Msa0880960:CDS
GCTGTGTTGCCAAATTTGTC+AGG 0.537540 6_1:+27840815 None:intergenic
GGAAAACGGATCGATCAAGC+AGG 0.537963 6_1:-27842308 Msa0880960:CDS
CTATATTCACCGTACCTGGT+GGG 0.538227 6_1:-27839730 Msa0880960:CDS
CAGCATTGCATGTGGCAACC+AGG 0.541967 6_1:-27840796 Msa0880960:CDS
AAGCAGCTAGCCAGGAGAAG+TGG 0.542236 6_1:-27839347 Msa0880960:CDS
TCAGTCCTCCGAGCCAATTG+AGG 0.545108 6_1:+27840935 None:intergenic
TCGGAAAGTGGGTTCTGTGT+TGG 0.547229 6_1:+27842392 None:intergenic
GACTAGAGCCGGCGCCGTCG+CGG 0.548417 6_1:+27842343 None:intergenic
GAAAGTCGTGAGAAAGAGGG+AGG 0.548432 6_1:+27842790 None:intergenic
TTGCATATTGCTGCTAGTCA+AGG 0.549825 6_1:-27841957 Msa0880960:CDS
CAGATAATGGGTACTTTGAG+TGG 0.549949 6_1:-27842170 Msa0880960:CDS
TGGAAGGAAAGGAAAGAGGG+AGG 0.550810 6_1:+27842761 None:intergenic
AAGTCGTGAGAAAGAGGGAG+GGG 0.550978 6_1:+27842792 None:intergenic
TGGGAAAGTCGTGAGAAAGA+GGG 0.551251 6_1:+27842787 None:intergenic
CTCTGAATGATGCCATGAGT+TGG 0.551504 6_1:+27839322 None:intergenic
AAGAGCTGAGGAAACTCCAC+AGG 0.552962 6_1:-27839823 Msa0880960:CDS
ATCTATGTAAACTCTTGAAG+TGG 0.553547 6_1:+27839109 None:intergenic
ATCTATGTAAACTCTTGAAG+TGG 0.553547 6_1:+27839194 None:intergenic
ATTCTGGTTACAGTTGTTGG+AGG 0.554005 6_1:-27839452 Msa0880960:CDS
GATTAACAAGCTCATGTGGT+TGG 0.554304 6_1:-27839549 Msa0880960:CDS
AAGGGACGAACTGAGGAAAA+CGG 0.554349 6_1:-27839924 Msa0880960:CDS
ATCATAATAATAATTTAGGA+AGG 0.555330 6_1:+27842653 None:intergenic
AGGTCATGATAGAAGAGTAG+AGG 0.556929 6_1:+27842584 None:intergenic
AAAGTCGTGAGAAAGAGGGA+GGG 0.557510 6_1:+27842791 None:intergenic
ACCTGGAAGGTTGAAATTGG+AGG 0.558297 6_1:+27842564 None:intergenic
GCCGTCGCGGACGACGGAGA+TGG 0.559929 6_1:+27842356 None:intergenic
CCATCATCGTTATCCCCACC+AGG 0.564948 6_1:+27839716 None:intergenic
TTTAGTTTCACCTCTAACAA+GGG 0.565107 6_1:+27839595 None:intergenic
GTTTGAAGACCAAATTACGT+TGG 0.566835 6_1:-27839260 Msa0880960:three_prime_UTR
GCTACAAGAAATGTCTTGGA+GGG 0.566909 6_1:-27838811 Msa0880960:three_prime_UTR
GAGTTTGAAAGGACTAGAGC+CGG 0.567456 6_1:+27842332 None:intergenic
GCAAAGACCCTCAATTGGCT+CGG 0.569896 6_1:-27840943 Msa0880960:CDS
GCTCTAGTCCTTTCAAACTC+AGG 0.572097 6_1:-27842329 Msa0880960:CDS
CATTGTTAATTCCTTCCCTG+TGG 0.572226 6_1:+27839807 None:intergenic
AGCAGAGAAAAGGGTAGTTG+AGG 0.573019 6_1:-27839573 Msa0880960:CDS
TCGTCGGTCGGAGGAACGAG+TGG 0.574175 6_1:-27839481 Msa0880960:CDS
CGCTGCTGTTATAAGTGGAG+TGG 0.575162 6_1:+27841105 None:intergenic
GCTGCTAGTCAAGGACATCA+TGG 0.575482 6_1:-27841948 Msa0880960:intron
ATAAGTGGAGTGGCGTTGGA+TGG 0.578501 6_1:+27841115 None:intergenic
GGAAGGAAGGATGAAAGTGA+AGG 0.582860 6_1:+27842670 None:intergenic
GCAGCTCAAAGAGGTGATGT+TGG 0.583391 6_1:-27842227 Msa0880960:CDS
GTGAATGAAGAGAATGAACT+TGG 0.587406 6_1:-27842095 Msa0880960:CDS
TCTGAGAATCAATATCAAGA+AGG 0.587872 6_1:+27842189 None:intergenic
ACGGAGATATTTCGGAAAGT+GGG 0.587917 6_1:+27842381 None:intergenic
TGTTATAAGTGGAGTGGCGT+TGG 0.592828 6_1:+27841111 None:intergenic
TTCAGAGTTCTCCAATTCCG+AGG 0.592884 6_1:-27839306 Msa0880960:CDS
GCATGAGTCATAATAAGTGT+TGG 0.594195 6_1:+27842698 None:intergenic
GCTATATTCACCGTACCTGG+TGG 0.598478 6_1:-27839731 Msa0880960:CDS
ATCTAGTAAAACCTGAACAA+TGG 0.600510 6_1:+27841168 None:intergenic
GCCTCTTCGTACATAGTCGT+CGG 0.600824 6_1:-27839497 Msa0880960:CDS
CGCATAAATTCGATCAACCT+CGG 0.601587 6_1:+27839289 None:intergenic
TGATAAAGAGAAAAGATGAG+TGG 0.602428 6_1:+27842741 None:intergenic
CGTACATAGTCGTCGGTCGG+AGG 0.602499 6_1:-27839490 Msa0880960:CDS
GTTGGCTTCTGTCTGTACCT+CGG 0.602568 6_1:-27839531 Msa0880960:CDS
CTGAGGAAACTCCACAGGGA+AGG 0.603249 6_1:-27839818 Msa0880960:CDS
TATATTCACCGTACCTGGTG+GGG 0.603908 6_1:-27839729 Msa0880960:CDS
GAAGTACGTGAAGCAAGTAA+CGG 0.604371 6_1:-27842279 Msa0880960:CDS
GGAGAAGTGGATCCAACTCA+TGG 0.605497 6_1:-27839334 Msa0880960:CDS
AGAAGAAGAACCAACCTGGA+AGG 0.609441 6_1:+27842551 None:intergenic
GACGAGAGGGCACGTCGAAG+TGG 0.609993 6_1:-27841083 Msa0880960:CDS
GGTGAATGAACTTCTGTCAA+AGG 0.612992 6_1:-27841062 Msa0880960:CDS
TTATAACAGCAGCGACGAGA+GGG 0.613377 6_1:-27841096 Msa0880960:CDS
AATGAACTTCTGTCAAAGGA+TGG 0.613527 6_1:-27841058 Msa0880960:CDS
TCTGATGACTCTTCAGAGAG+AGG 0.615975 6_1:+27840004 None:intergenic
AATTAACAATGCCACAAACT+CGG 0.616650 6_1:-27839795 Msa0880960:CDS
CGTCGGTCGGAGGAACGAGT+GGG 0.619749 6_1:-27839480 Msa0880960:CDS
ACCAACCAAGGGACGAACTG+AGG 0.620407 6_1:-27839931 Msa0880960:CDS
CTAACGAGCTCAACCAACCA+AGG 0.621035 6_1:-27839943 Msa0880960:CDS
CTTCATCTAGCAGCTCAAAG+AGG 0.623399 6_1:-27842236 Msa0880960:CDS
CTTCGTACATAGTCGTCGGT+CGG 0.624785 6_1:-27839493 Msa0880960:CDS
CTTATAACAGCAGCGACGAG+AGG 0.631608 6_1:-27841097 Msa0880960:CDS
TGCCACAAACTCGGTGACAG+TGG 0.632510 6_1:-27839786 Msa0880960:CDS
AGTCATAGTGCCAATAACTC+CGG 0.636725 6_1:+27839418 None:intergenic
TGGCAACACAGCATTGCATG+TGG 0.637663 6_1:-27840804 Msa0880960:CDS
GGACATCCTCTCTCGATATG+GGG 0.638757 6_1:-27839975 Msa0880960:CDS
TGACTAGCAGCAATATGCAA+AGG 0.639675 6_1:+27841960 None:intergenic
ACAATATATCCAAAGAGCTG+AGG 0.644642 6_1:-27839835 Msa0880960:CDS
AAAATTCTCAGTAACAGACT+AGG 0.646190 6_1:+27838834 None:intergenic
AAGACCCTCAATTGGCTCGG+AGG 0.651684 6_1:-27840940 Msa0880960:CDS
GCGGACGACGGAGATGGCGA+CGG 0.652416 6_1:+27842362 None:intergenic
GGCTTCTGTCTGTACCTCGG+TGG 0.655940 6_1:-27839528 Msa0880960:CDS
GAAAACGGATCGATCAAGCA+GGG 0.663000 6_1:-27842307 Msa0880960:CDS
TAACGATGATGGATCAGGAG+TGG 0.663853 6_1:-27839705 Msa0880960:CDS
TAAGTGCCCCATATCGAGAG+AGG 0.665007 6_1:+27839969 None:intergenic
AGGTGATTAACAAGCTCATG+TGG 0.671742 6_1:-27839553 Msa0880960:CDS
ACCGACGACTATGTACGAAG+AGG 0.681066 6_1:+27839496 None:intergenic
CACAAACTCGGTGACAGTGG+TGG 0.691648 6_1:-27839783 Msa0880960:CDS
TAACGAGCTCAACCAACCAA+GGG 0.693605 6_1:-27839942 Msa0880960:CDS
ACTAGGATAACATATAGACC+AGG 0.706188 6_1:+27838851 None:intergenic
CTATGACTTACTATGTAGTG+AGG 0.708286 6_1:-27839403 Msa0880960:CDS
CTAAGAGAACAAGATCCATG+AGG 0.720939 6_1:-27839379 Msa0880960:CDS
AGAGCTGAGGAAACTCCACA+GGG 0.730372 6_1:-27839822 Msa0880960:CDS
AAAAGGGCAGAGCTGTGACG+TGG 0.742175 6_1:-27840879 Msa0880960:CDS
GTCATGATAGAAGAGTAGAG+GGG 0.743790 6_1:+27842586 None:intergenic
AGAGGCAATAAATGCCACCG+AGG 0.784742 6_1:+27839514 None:intergenic
GATTTGTGAGAAGAATAACA+CGG 0.801731 6_1:-27838919 Msa0880960:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAATCATAATAATAATTT+AGG + chr6_1:27838961-27838980 None:intergenic 10.0%
!!! GTTTTGTATTTTTTTTTTTT+TGG - chr6_1:27839990-27840009 Msa0880960:CDS 10.0%
!! ATCATAATAATAATTTAGGA+AGG + chr6_1:27838957-27838976 None:intergenic 15.0%
!!! TATTTTGCTTTTTGTAAAAA+TGG - chr6_1:27839771-27839790 Msa0880960:CDS 15.0%
!!! ATTTTGCTTTTTGTAAAAAT+GGG - chr6_1:27839772-27839791 Msa0880960:CDS 15.0%
!!! TTTTTTTAAGAAGCTATTAA+TGG - chr6_1:27840197-27840216 Msa0880960:intron 15.0%
!! AAAAATTAAAAGAAAACAAG+AGG + chr6_1:27841396-27841415 None:intergenic 15.0%
!!! AATATTAGATTTTTCATTCA+AGG + chr6_1:27841469-27841488 None:intergenic 15.0%
!! TAATAATAATTTAGGAAGGA+AGG + chr6_1:27838953-27838972 None:intergenic 20.0%
!!! TATTTTGAATGAATTGACTT+TGG - chr6_1:27839806-27839825 Msa0880960:CDS 20.0%
!!! TTTTTTTTGGAACATATTCT+TGG - chr6_1:27840003-27840022 Msa0880960:CDS 20.0%
!! TCATAATTGAGTTTCTTTAT+TGG + chr6_1:27840163-27840182 None:intergenic 20.0%
!! TAATACTACTACTACAAATA+TGG + chr6_1:27840970-27840989 None:intergenic 20.0%
!! GCAACTACTTAAATAAATAA+AGG + chr6_1:27841198-27841217 None:intergenic 20.0%
!!! TGTTATTTTGCTTTGAAAAT+TGG - chr6_1:27841272-27841291 Msa0880960:intron 20.0%
! TTACAGTGAAGTAAAAAGAT+GGG + chr6_1:27839091-27839110 None:intergenic 25.0%
! TTTACAGTGAAGTAAAAAGA+TGG + chr6_1:27839092-27839111 None:intergenic 25.0%
!!! TGATATTGATTCTCAGATAA+TGG - chr6_1:27839424-27839443 Msa0880960:CDS 25.0%
!!! GATATTGATTCTCAGATAAT+GGG - chr6_1:27839425-27839444 Msa0880960:CDS 25.0%
! AACATCAAAACAAAGGAAAA+AGG + chr6_1:27839732-27839751 None:intergenic 25.0%
!!! TTTTTCCTTTGTTTTGATGT+TGG - chr6_1:27839731-27839750 Msa0880960:CDS 25.0%
!!! TTTTCCTTTGTTTTGATGTT+GGG - chr6_1:27839732-27839751 Msa0880960:CDS 25.0%
! AAGGTAAAACGATTTATGTT+TGG - chr6_1:27839843-27839862 Msa0880960:CDS 25.0%
! AGGTAAAACGATTTATGTTT+GGG - chr6_1:27839844-27839863 Msa0880960:CDS 25.0%
! AATTTAATCGGATATACTTC+TGG + chr6_1:27840086-27840105 None:intergenic 25.0%
! TTGAGTATTTATCTTGCTTA+AGG - chr6_1:27840134-27840153 Msa0880960:intron 25.0%
! CTCAATTATGATGCTATTAA+TGG - chr6_1:27840172-27840191 Msa0880960:intron 25.0%
! ATTAACTTACTCGAACAAAT+CGG - chr6_1:27840920-27840939 Msa0880960:CDS 25.0%
! TTTAAGTAGTTGCAAGTATA+AGG - chr6_1:27841205-27841224 Msa0880960:intron 25.0%
! AAACATGTTATATGAGACAA+GGG - chr6_1:27841338-27841357 Msa0880960:intron 25.0%
!! TCAATTTTGTCTAGAAGTTT+TGG - chr6_1:27841369-27841388 Msa0880960:intron 25.0%
!! CAATTTTGTCTAGAAGTTTT+GGG - chr6_1:27841370-27841389 Msa0880960:intron 25.0%
!!! ATTGTTGTTTCTCAATTTCT+TGG - chr6_1:27841486-27841505 Msa0880960:intron 25.0%
!! TATATTGTGGACATTTTTGT+TGG + chr6_1:27841760-27841779 None:intergenic 25.0%
! GTTATAGGATCATAACAAAT+TGG - chr6_1:27842579-27842598 Msa0880960:exon 25.0%
! TATGCATTTGTATAAATCAC+AGG - chr6_1:27842661-27842680 Msa0880960:five_prime_UTR 25.0%
! TTGTAACACAAAAATATTCC+TGG - chr6_1:27842738-27842757 Msa0880960:five_prime_UTR 25.0%
TGATAAAGAGAAAAGATGAG+TGG + chr6_1:27838869-27838888 None:intergenic 30.0%
!! TAATAAGTGTTGGCTTTGAT+TGG + chr6_1:27838902-27838921 None:intergenic 30.0%
TACAGTGAAGTAAAAAGATG+GGG + chr6_1:27839090-27839109 None:intergenic 30.0%
ACTCAAAGAGATTCAGAAAA+AGG - chr6_1:27839179-27839198 Msa0880960:three_prime_UTR 30.0%
TCTGAGAATCAATATCAAGA+AGG + chr6_1:27839421-27839440 None:intergenic 30.0%
! GTTTCTAAAAAGAATCGATC+TGG - chr6_1:27839617-27839636 Msa0880960:CDS 30.0%
AAATCCCAACATCAAAACAA+AGG + chr6_1:27839739-27839758 None:intergenic 30.0%
!!! TTGTTTTGATGTTGGGATTT+TGG - chr6_1:27839739-27839758 Msa0880960:CDS 30.0%
!! TTTGGCTAAAATTGAGTTGA+AGG - chr6_1:27839824-27839843 Msa0880960:CDS 30.0%
ACATAGCATTAACTCTACTA+CGG + chr6_1:27840268-27840287 None:intergenic 30.0%
AATAAGACAACGTTGATGTT+TGG + chr6_1:27840302-27840321 None:intergenic 30.0%
! AACATCAACGTTGTCTTATT+TGG - chr6_1:27840302-27840321 Msa0880960:intron 30.0%
AGATTACTACAAAGAACAGA+AGG + chr6_1:27840398-27840417 None:intergenic 30.0%
ATCTAGTAAAACCTGAACAA+TGG + chr6_1:27840442-27840461 None:intergenic 30.0%
!! CAATAGTTTTGCTTAAGCTT+GGG + chr6_1:27840470-27840489 None:intergenic 30.0%
!!! ATGCAAAGCATTTTTTCCAT+TGG + chr6_1:27840598-27840617 None:intergenic 30.0%
TCATCACTATATGTACTGTA+TGG + chr6_1:27840890-27840909 None:intergenic 30.0%
TTAACTTACTCGAACAAATC+GGG - chr6_1:27840921-27840940 Msa0880960:CDS 30.0%
AAGTCTCCAATATTGAAAAC+AGG - chr6_1:27841007-27841026 Msa0880960:CDS 30.0%
! TAGCTACCTGTTTTCAATAT+TGG + chr6_1:27841016-27841035 None:intergenic 30.0%
GTGCACACTACTTAAAAAAA+TGG + chr6_1:27841308-27841327 None:intergenic 30.0%
GAAACATGTTATATGAGACA+AGG - chr6_1:27841337-27841356 Msa0880960:intron 30.0%
! AAGATTTTCAGCAATGTCAA+GGG + chr6_1:27841583-27841602 None:intergenic 30.0%
TGAAGAGTCATCAGATATAA+AGG - chr6_1:27841611-27841630 Msa0880960:intron 30.0%
AATTAACAATGCCACAAACT+CGG - chr6_1:27841812-27841831 Msa0880960:intron 30.0%
!! TATTGCGCTTTTTACATCTT+TGG - chr6_1:27841968-27841987 Msa0880960:CDS 30.0%
! TTTAGTTTCACCTCTAACAA+GGG + chr6_1:27842015-27842034 None:intergenic 30.0%
TGAAACTAAAGCAGAGAAAA+GGG - chr6_1:27842025-27842044 Msa0880960:CDS 30.0%
TTATCCTTTCCAACGTAATT+TGG + chr6_1:27842359-27842378 None:intergenic 30.0%
ATCTATGTAAACTCTTGAAG+TGG + chr6_1:27842416-27842435 None:intergenic 30.0%
ATCTATGTAAACTCTTGAAG+TGG + chr6_1:27842416-27842435 None:intergenic 30.0%
GATTTGTGAGAAGAATAACA+CGG - chr6_1:27842688-27842707 Msa0880960:five_prime_UTR 30.0%
AAAATTCTCAGTAACAGACT+AGG + chr6_1:27842776-27842795 None:intergenic 30.0%
! TTTTGCTACAAGAAATGTCT+TGG - chr6_1:27842792-27842811 Msa0880960:five_prime_UTR 30.0%
AAAGAGAAAAGATGAGTGGA+AGG + chr6_1:27838865-27838884 None:intergenic 35.0%
GCATGAGTCATAATAAGTGT+TGG + chr6_1:27838912-27838931 None:intergenic 35.0%
ACAGTGAAGTAAAAAGATGG+GGG + chr6_1:27839089-27839108 None:intergenic 35.0%
! TACGCTTTTACGTTTATTGC+AGG - chr6_1:27839146-27839165 Msa0880960:three_prime_UTR 35.0%
TCCTTTCAAACTCAGGAAAA+CGG - chr6_1:27839285-27839304 Msa0880960:CDS 35.0%
GTGAATGAAGAGAATGAACT+TGG - chr6_1:27839512-27839531 Msa0880960:CDS 35.0%
TTTGTTTACTGCTGCTGAAA+AGG - chr6_1:27839544-27839563 Msa0880960:CDS 35.0%
TTGTTTACTGCTGCTGAAAA+GGG - chr6_1:27839545-27839564 Msa0880960:CDS 35.0%
GCTTCAAGTAGAATCAGTTA+TGG - chr6_1:27839942-27839961 Msa0880960:CDS 35.0%
TCAGTTATGGAGACAAAATC+AGG - chr6_1:27839955-27839974 Msa0880960:CDS 35.0%
CTTGAGTAGCTTCAATTTGT+GGG - chr6_1:27840341-27840360 Msa0880960:intron 35.0%
! TAGCTTCAATTTGTGGGTTA+TGG - chr6_1:27840347-27840366 Msa0880960:intron 35.0%
!! CCAATAGTTTTGCTTAAGCT+TGG + chr6_1:27840471-27840490 None:intergenic 35.0%
CCAAGCTTAAGCAAAACTAT+TGG - chr6_1:27840468-27840487 Msa0880960:intron 35.0%
AATGAACTTCTGTCAAAGGA+TGG - chr6_1:27840549-27840568 Msa0880960:intron 35.0%
TTGGAAATTGCAAGATCCAA+TGG - chr6_1:27840579-27840598 Msa0880960:intron 35.0%
CATTGCATATGGCTGTAAAA+GGG - chr6_1:27840712-27840731 Msa0880960:intron 35.0%
GTTATGCTTCCTGACAAATT+TGG - chr6_1:27840783-27840802 Msa0880960:CDS 35.0%
TGCTACAAAAAATGCAAACG+AGG - chr6_1:27841040-27841059 Msa0880960:CDS 35.0%
AAGTAGTTGCAAGTATAAGG+TGG - chr6_1:27841208-27841227 Msa0880960:intron 35.0%
ACATGCTCAAAAGTAACTAG+GGG + chr6_1:27841439-27841458 None:intergenic 35.0%
GACATGCTCAAAAGTAACTA+GGG + chr6_1:27841440-27841459 None:intergenic 35.0%
TGACATGCTCAAAAGTAACT+AGG + chr6_1:27841441-27841460 None:intergenic 35.0%
AATGCATTTACGTTTGTGTC+TGG + chr6_1:27841540-27841559 None:intergenic 35.0%
! GAAGATTTTCAGCAATGTCA+AGG + chr6_1:27841584-27841603 None:intergenic 35.0%
!!! GACATTTTTGTTGGTTCTCT+TGG + chr6_1:27841751-27841770 None:intergenic 35.0%
TCAGCTCTTTGGATATATTG+TGG + chr6_1:27841773-27841792 None:intergenic 35.0%
ACAATATATCCAAAGAGCTG+AGG - chr6_1:27841772-27841791 Msa0880960:intron 35.0%
! TTTTACATCTTTGGCTGTTG+TGG - chr6_1:27841977-27841996 Msa0880960:CDS 35.0%
GTTCAAATTACCCTTGTTAG+AGG - chr6_1:27842002-27842021 Msa0880960:CDS 35.0%
! CTTTAGTTTCACCTCTAACA+AGG + chr6_1:27842016-27842035 None:intergenic 35.0%
GTGAAACTAAAGCAGAGAAA+AGG - chr6_1:27842024-27842043 Msa0880960:CDS 35.0%
GTGATAATATCCGGAGTTAT+TGG - chr6_1:27842179-27842198 Msa0880960:CDS 35.0%
CTATGACTTACTATGTAGTG+AGG - chr6_1:27842204-27842223 Msa0880960:CDS 35.0%
GTTTGAAGACCAAATTACGT+TGG - chr6_1:27842347-27842366 Msa0880960:CDS 35.0%
AAGACCAAATTACGTTGGAA+AGG - chr6_1:27842352-27842371 Msa0880960:CDS 35.0%
! TAAGCTGCTGTTGTTGTTAT+AGG - chr6_1:27842564-27842583 Msa0880960:intron 35.0%
ACTAGGATAACATATAGACC+AGG + chr6_1:27842759-27842778 None:intergenic 35.0%
AAAGGAAAGAGGGAGGAAAT+GGG + chr6_1:27838842-27838861 None:intergenic 40.0%
GAAAAGATGAGTGGAAGGAA+AGG + chr6_1:27838860-27838879 None:intergenic 40.0%
GTCATGATAGAAGAGTAGAG+GGG + chr6_1:27839024-27839043 None:intergenic 40.0%
GGTCATGATAGAAGAGTAGA+GGG + chr6_1:27839025-27839044 None:intergenic 40.0%
AGGTCATGATAGAAGAGTAG+AGG + chr6_1:27839026-27839045 None:intergenic 40.0%
AGATAGAAGAAGAACCAACC+TGG + chr6_1:27839063-27839082 None:intergenic 40.0%
! GCTTTTACGTTTATTGCAGG+TGG - chr6_1:27839149-27839168 Msa0880960:three_prime_UTR 40.0%
ACGGAGATATTTCGGAAAGT+GGG + chr6_1:27839229-27839248 None:intergenic 40.0%
! TCCGTTTTCCTGAGTTTGAA+AGG + chr6_1:27839289-27839308 None:intergenic 40.0%
GAAGTACGTGAAGCAAGTAA+CGG - chr6_1:27839328-27839347 Msa0880960:CDS 40.0%
AAGTACGTGAAGCAAGTAAC+GGG - chr6_1:27839329-27839348 Msa0880960:CDS 40.0%
!! CAGATAATGGGTACTTTGAG+TGG - chr6_1:27839437-27839456 Msa0880960:CDS 40.0%
GGGTCATCTTGATGTTGTTA+AGG - chr6_1:27839565-27839584 Msa0880960:CDS 40.0%
TGACTAGCAGCAATATGCAA+AGG + chr6_1:27839650-27839669 None:intergenic 40.0%
TTGCATATTGCTGCTAGTCA+AGG - chr6_1:27839650-27839669 Msa0880960:CDS 40.0%
GCTACTCAAGGTCTAACAAT+TGG + chr6_1:27840331-27840350 None:intergenic 40.0%
CCACAAATTGAAGCTACTCA+AGG + chr6_1:27840343-27840362 None:intergenic 40.0%
CCTTGAGTAGCTTCAATTTG+TGG - chr6_1:27840340-27840359 Msa0880960:intron 40.0%
TTCATTTGCAGCCATTGTTC+AGG - chr6_1:27840428-27840447 Msa0880960:intron 40.0%
GGTGAATGAACTTCTGTCAA+AGG - chr6_1:27840545-27840564 Msa0880960:intron 40.0%
AGGCTTTCACGATTTCTGTA+TGG + chr6_1:27840638-27840657 None:intergenic 40.0%
GCATTGCATATGGCTGTAAA+AGG - chr6_1:27840711-27840730 Msa0880960:intron 40.0%
CATTGTTAATTCCTTCCCTG+TGG + chr6_1:27841803-27841822 None:intergenic 40.0%
AGGTGATTAACAAGCTCATG+TGG - chr6_1:27842054-27842073 Msa0880960:CDS 40.0%
GATTAACAAGCTCATGTGGT+TGG - chr6_1:27842058-27842077 Msa0880960:CDS 40.0%
! GCAATTCTGGTTACAGTTGT+TGG - chr6_1:27842152-27842171 Msa0880960:CDS 40.0%
! ATTCTGGTTACAGTTGTTGG+AGG - chr6_1:27842155-27842174 Msa0880960:CDS 40.0%
GTTGGAGGAGTGATAATATC+CGG - chr6_1:27842170-27842189 Msa0880960:CDS 40.0%
AGTCATAGTGCCAATAACTC+CGG + chr6_1:27842192-27842211 None:intergenic 40.0%
CTAAGAGAACAAGATCCATG+AGG - chr6_1:27842228-27842247 Msa0880960:CDS 40.0%
AATTCGATCAACCTCGGAAT+TGG + chr6_1:27842315-27842334 None:intergenic 40.0%
CGCATAAATTCGATCAACCT+CGG + chr6_1:27842321-27842340 None:intergenic 40.0%
TGCTACAAGAAATGTCTTGG+AGG - chr6_1:27842795-27842814 Msa0880960:five_prime_UTR 40.0%
GCTACAAGAAATGTCTTGGA+GGG - chr6_1:27842796-27842815 Msa0880960:five_prime_UTR 40.0%
AAAGTCGTGAGAAAGAGGGA+GGG + chr6_1:27838819-27838838 None:intergenic 45.0%
TGGGAAAGTCGTGAGAAAGA+GGG + chr6_1:27838823-27838842 None:intergenic 45.0%
ATGGGAAAGTCGTGAGAAAG+AGG + chr6_1:27838824-27838843 None:intergenic 45.0%
GAAAGGAAAGAGGGAGGAAA+TGG + chr6_1:27838843-27838862 None:intergenic 45.0%
GAGTGGAAGGAAAGGAAAGA+GGG + chr6_1:27838852-27838871 None:intergenic 45.0%
TGAGTGGAAGGAAAGGAAAG+AGG + chr6_1:27838853-27838872 None:intergenic 45.0%
GGAAGGAAGGATGAAAGTGA+AGG + chr6_1:27838940-27838959 None:intergenic 45.0%
ACCTCCAATTTCAACCTTCC+AGG - chr6_1:27839042-27839061 Msa0880960:three_prime_UTR 45.0%
ACCTGGAAGGTTGAAATTGG+AGG + chr6_1:27839046-27839065 None:intergenic 45.0%
CCAACCTGGAAGGTTGAAAT+TGG + chr6_1:27839049-27839068 None:intergenic 45.0%
CCAATTTCAACCTTCCAGGT+TGG - chr6_1:27839046-27839065 Msa0880960:three_prime_UTR 45.0%
AGAAGAAGAACCAACCTGGA+AGG + chr6_1:27839059-27839078 None:intergenic 45.0%
GACGGAGATATTTCGGAAAG+TGG + chr6_1:27839230-27839249 None:intergenic 45.0%
AGATGGCGACGGAGATATTT+CGG + chr6_1:27839237-27839256 None:intergenic 45.0%
GAGTTTGAAAGGACTAGAGC+CGG + chr6_1:27839278-27839297 None:intergenic 45.0%
GCTCTAGTCCTTTCAAACTC+AGG - chr6_1:27839278-27839297 Msa0880960:exon 45.0%
GAAAACGGATCGATCAAGCA+GGG - chr6_1:27839300-27839319 Msa0880960:CDS 45.0%
CTTCATCTAGCAGCTCAAAG+AGG - chr6_1:27839371-27839390 Msa0880960:CDS 45.0%
TGTTATAAGTGGAGTGGCGT+TGG + chr6_1:27840499-27840518 None:intergenic 45.0%
TTATAACAGCAGCGACGAGA+GGG - chr6_1:27840511-27840530 Msa0880960:intron 45.0%
TTTGCATTTAGCTGCTCGTC+CGG - chr6_1:27840611-27840630 Msa0880960:intron 45.0%
TTCACGATTTCTGTATGGCC+CGG + chr6_1:27840633-27840652 None:intergenic 45.0%
AGGGCAAACTGCATTGCATA+TGG - chr6_1:27840701-27840720 Msa0880960:intron 45.0%
GCTGTGTTGCCAAATTTGTC+AGG + chr6_1:27840795-27840814 None:intergenic 45.0%
AACCAGGAAAAAGCGAGTAG+AGG - chr6_1:27840827-27840846 Msa0880960:CDS 45.0%
!!! TACCTCTACTCGCTTTTTCC+TGG + chr6_1:27840832-27840851 None:intergenic 45.0%
CATTTACGTTTGTGTCTGGC+AGG + chr6_1:27841536-27841555 None:intergenic 45.0%
!! CAATGTCAAGGGCTGTTTTG+TGG + chr6_1:27841572-27841591 None:intergenic 45.0%
TCTGATGACTCTTCAGAGAG+AGG + chr6_1:27841606-27841625 None:intergenic 45.0%
AAGGACATCCTCTCTCGATA+TGG - chr6_1:27841630-27841649 Msa0880960:intron 45.0%
AGGACATCCTCTCTCGATAT+GGG - chr6_1:27841631-27841650 Msa0880960:intron 45.0%
TAACGAGCTCAACCAACCAA+GGG - chr6_1:27841665-27841684 Msa0880960:intron 45.0%
AAGGGACGAACTGAGGAAAA+CGG - chr6_1:27841683-27841702 Msa0880960:intron 45.0%
GAAAGATGTTCACACACAGC+TGG - chr6_1:27841719-27841738 Msa0880960:intron 45.0%
CTATATTCACCGTACCTGGT+GGG - chr6_1:27841877-27841896 Msa0880960:intron 45.0%
TATATTCACCGTACCTGGTG+GGG - chr6_1:27841878-27841897 Msa0880960:intron 45.0%
!! TAACGATGATGGATCAGGAG+TGG - chr6_1:27841902-27841921 Msa0880960:intron 45.0%
AGCAGAGAAAAGGGTAGTTG+AGG - chr6_1:27842034-27842053 Msa0880960:CDS 45.0%
CTGCTTCTCTTTCTTCCTCA+TGG + chr6_1:27842246-27842265 None:intergenic 45.0%
CTCTGAATGATGCCATGAGT+TGG + chr6_1:27842288-27842307 None:intergenic 45.0%
TTCAGAGTTCTCCAATTCCG+AGG - chr6_1:27842301-27842320 Msa0880960:CDS 45.0%
!! GAGTTTTGTGCACTTCAGCA+TGG - chr6_1:27842632-27842651 Msa0880960:five_prime_UTR 45.0%
!!! AGTTTTTTTTTTTTTTTAAA+AGG + chr6_1:27840049-27840068 None:intergenic 5.0%
!! TAATAAATTACAAATTTAAT+CGG + chr6_1:27840098-27840117 None:intergenic 5.0%
AAGTCGTGAGAAAGAGGGAG+GGG + chr6_1:27838818-27838837 None:intergenic 50.0%
GAAAGTCGTGAGAAAGAGGG+AGG + chr6_1:27838820-27838839 None:intergenic 50.0%
TGGAAGGAAAGGAAAGAGGG+AGG + chr6_1:27838849-27838868 None:intergenic 50.0%
! TCGGAAAGTGGGTTCTGTGT+TGG + chr6_1:27839218-27839237 None:intergenic 50.0%
GGAAAACGGATCGATCAAGC+AGG - chr6_1:27839299-27839318 Msa0880960:CDS 50.0%
GCAGCTCAAAGAGGTGATGT+TGG - chr6_1:27839380-27839399 Msa0880960:CDS 50.0%
GCTGCTAGTCAAGGACATCA+TGG - chr6_1:27839659-27839678 Msa0880960:CDS 50.0%
! ATAAGTGGAGTGGCGTTGGA+TGG + chr6_1:27840495-27840514 None:intergenic 50.0%
CGCTGCTGTTATAAGTGGAG+TGG + chr6_1:27840505-27840524 None:intergenic 50.0%
CTCGTCGCTGCTGTTATAAG+TGG + chr6_1:27840510-27840529 None:intergenic 50.0%
CTTATAACAGCAGCGACGAG+AGG - chr6_1:27840510-27840529 Msa0880960:intron 50.0%
GTCAAAGGATGGCAGCTTGT+TGG - chr6_1:27840560-27840579 Msa0880960:intron 50.0%
TTGCATTTAGCTGCTCGTCC+GGG - chr6_1:27840612-27840631 Msa0880960:intron 50.0%
TTGAGGGTCTTTGCTGAGCA+AGG + chr6_1:27840658-27840677 None:intergenic 50.0%
GCTCAGCAAAGACCCTCAAT+TGG - chr6_1:27840659-27840678 Msa0880960:intron 50.0%
GCAAAGACCCTCAATTGGCT+CGG - chr6_1:27840664-27840683 Msa0880960:intron 50.0%
CTCGGAGGACTGACAAGAAA+GGG - chr6_1:27840682-27840701 Msa0880960:intron 50.0%
TGGCAACACAGCATTGCATG+TGG - chr6_1:27840803-27840822 Msa0880960:CDS 50.0%
GGACATCCTCTCTCGATATG+GGG - chr6_1:27841632-27841651 Msa0880960:intron 50.0%
TAAGTGCCCCATATCGAGAG+AGG + chr6_1:27841641-27841660 None:intergenic 50.0%
CTAACGAGCTCAACCAACCA+AGG - chr6_1:27841664-27841683 Msa0880960:intron 50.0%
! GTTTTCCTCAGTTCGTCCCT+TGG + chr6_1:27841684-27841703 None:intergenic 50.0%
GTGGAGTTTCCTCAGCTCTT+TGG + chr6_1:27841784-27841803 None:intergenic 50.0%
AAGAGCTGAGGAAACTCCAC+AGG - chr6_1:27841784-27841803 Msa0880960:intron 50.0%
AGAGCTGAGGAAACTCCACA+GGG - chr6_1:27841785-27841804 Msa0880960:intron 50.0%
GCTGCTATATTCACCGTACC+TGG - chr6_1:27841873-27841892 Msa0880960:intron 50.0%
GCTATATTCACCGTACCTGG+TGG - chr6_1:27841876-27841895 Msa0880960:intron 50.0%
ATCGTTATCCCCACCAGGTA+CGG + chr6_1:27841889-27841908 None:intergenic 50.0%
!! GGGGATAACGATGATGGATC+AGG - chr6_1:27841897-27841916 Msa0880960:intron 50.0%
! GTTGGCTTCTGTCTGTACCT+CGG - chr6_1:27842076-27842095 Msa0880960:CDS 50.0%
AGAGGCAATAAATGCCACCG+AGG + chr6_1:27842096-27842115 None:intergenic 50.0%
GCCTCTTCGTACATAGTCGT+CGG - chr6_1:27842110-27842129 Msa0880960:CDS 50.0%
ACCGACGACTATGTACGAAG+AGG + chr6_1:27842114-27842133 None:intergenic 50.0%
CTTCGTACATAGTCGTCGGT+CGG - chr6_1:27842114-27842133 Msa0880960:CDS 50.0%
AGAAAGAGAAGCAGCTAGCC+AGG - chr6_1:27842252-27842271 Msa0880960:CDS 50.0%
! TGAGTTGGATCCACTTCTCC+TGG + chr6_1:27842273-27842292 None:intergenic 50.0%
GGAGAAGTGGATCCAACTCA+TGG - chr6_1:27842273-27842292 Msa0880960:CDS 50.0%
!! AAGACCCTCAATTGGCTCGG+AGG - chr6_1:27840667-27840686 Msa0880960:intron 55.0%
CAGTCCTCCGAGCCAATTGA+GGG + chr6_1:27840674-27840693 None:intergenic 55.0%
TCAGTCCTCCGAGCCAATTG+AGG + chr6_1:27840675-27840694 None:intergenic 55.0%
GCTCGGAGGACTGACAAGAA+AGG - chr6_1:27840681-27840700 Msa0880960:intron 55.0%
AAAAGGGCAGAGCTGTGACG+TGG - chr6_1:27840728-27840747 Msa0880960:intron 55.0%
CAGCATTGCATGTGGCAACC+AGG - chr6_1:27840811-27840830 Msa0880960:CDS 55.0%
ACCAACCAAGGGACGAACTG+AGG - chr6_1:27841676-27841695 Msa0880960:intron 55.0%
TCCTCAGTTCGTCCCTTGGT+TGG + chr6_1:27841680-27841699 None:intergenic 55.0%
CTGAGGAAACTCCACAGGGA+AGG - chr6_1:27841789-27841808 Msa0880960:intron 55.0%
! TGCCACAAACTCGGTGACAG+TGG - chr6_1:27841821-27841840 Msa0880960:intron 55.0%
CACCACTGTCACCGAGTTTG+TGG + chr6_1:27841826-27841845 None:intergenic 55.0%
! CACAAACTCGGTGACAGTGG+TGG - chr6_1:27841824-27841843 Msa0880960:intron 55.0%
CCATCATCGTTATCCCCACC+AGG + chr6_1:27841894-27841913 None:intergenic 55.0%
CCTGGTGGGGATAACGATGA+TGG - chr6_1:27841891-27841910 Msa0880960:intron 55.0%
!! GAACGAGTGGGCTGCAATTC+TGG - chr6_1:27842139-27842158 Msa0880960:CDS 55.0%
AAGCAGCTAGCCAGGAGAAG+TGG - chr6_1:27842260-27842279 Msa0880960:CDS 55.0%
GGCTTCTGTCTGTACCTCGG+TGG - chr6_1:27842079-27842098 Msa0880960:CDS 60.0%
CGTACATAGTCGTCGGTCGG+AGG - chr6_1:27842117-27842136 Msa0880960:CDS 60.0%
! GACGAGAGGGCACGTCGAAG+TGG - chr6_1:27840524-27840543 Msa0880960:intron 65.0%
TCGTCGGTCGGAGGAACGAG+TGG - chr6_1:27842126-27842145 Msa0880960:CDS 65.0%
CGTCGGTCGGAGGAACGAGT+GGG - chr6_1:27842127-27842146 Msa0880960:CDS 65.0%
GCGGACGACGGAGATGGCGA+CGG + chr6_1:27839248-27839267 None:intergenic 70.0%
GCCATCTCCGTCGTCCGCGA+CGG - chr6_1:27839250-27839269 Msa0880960:three_prime_UTR 70.0%
GCCGTCGCGGACGACGGAGA+TGG + chr6_1:27839254-27839273 None:intergenic 75.0%
GACTAGAGCCGGCGCCGTCG+CGG + chr6_1:27839267-27839286 None:intergenic 75.0%
! TCCGTCGTCCGCGACGGCGC+CGG - chr6_1:27839256-27839275 Msa0880960:three_prime_UTR 80.0%
! GCCGGCGCCGTCGCGGACGA+CGG + chr6_1:27839260-27839279 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 27838808 27842821 27838808 ID=Msa0880960;Name=Msa0880960
chr6_1 mRNA 27838808 27842821 27838808 ID=Msa0880960-mRNA-1;Parent=Msa0880960;Name=Msa0880960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=231|1|1|1|0.75|0.6|5|455|593
chr6_1 exon 27838808 27838979 27838808 ID=Msa0880960-mRNA-1:exon:6911;Parent=Msa0880960-mRNA-1
chr6_1 exon 27839000 27840116 27839000 ID=Msa0880960-mRNA-1:exon:6910;Parent=Msa0880960-mRNA-1
chr6_1 exon 27840781 27841190 27840781 ID=Msa0880960-mRNA-1:exon:6909;Parent=Msa0880960-mRNA-1
chr6_1 exon 27841949 27842461 27841949 ID=Msa0880960-mRNA-1:exon:6908;Parent=Msa0880960-mRNA-1
chr6_1 exon 27842566 27842821 27842566 ID=Msa0880960-mRNA-1:exon:6907;Parent=Msa0880960-mRNA-1
chr6_1 five_prime_UTR 27842591 27842821 27842591 ID=Msa0880960-mRNA-1:five_prime_utr;Parent=Msa0880960-mRNA-1
chr6_1 CDS 27842566 27842590 27842566 ID=Msa0880960-mRNA-1:cds;Parent=Msa0880960-mRNA-1
chr6_1 CDS 27841949 27842461 27841949 ID=Msa0880960-mRNA-1:cds;Parent=Msa0880960-mRNA-1
chr6_1 CDS 27840781 27841190 27840781 ID=Msa0880960-mRNA-1:cds;Parent=Msa0880960-mRNA-1
chr6_1 CDS 27839283 27840116 27839283 ID=Msa0880960-mRNA-1:cds;Parent=Msa0880960-mRNA-1
chr6_1 three_prime_UTR 27839000 27839282 27839000 ID=Msa0880960-mRNA-1:three_prime_utr;Parent=Msa0880960-mRNA-1
chr6_1 three_prime_UTR 27838808 27838979 27838808 ID=Msa0880960-mRNA-1:three_prime_utr;Parent=Msa0880960-mRNA-1
Gene Sequence

>Msa0880960

ATGACCTCCAATTTCAACCTTCCAGGTGGAGCTCAAACTCAAAGAGATTCAGAAAAAGGAACGATGATGACACCAACACAGAACCCACTTTCCGAAATATCTCCGTCGCCATCTCCGTCGTCCGCGACGGCGCCGGCTCTAGTCCTTTCAAACTCAGGAAAACGGATCGATCAAGCAGGGAAGAAGAAGTACGTGAAGCAAGTAACGGGTCGTCACAACGACACAGAGCTTCATCTAGCAGCTCAAAGAGGTGATGTTGGTGCTGTGAGACAGATCCTTCTTGATATTGATTCTCAGATAATGGGTACTTTGAGTGGTGATGATGATGTTGATCTTAACGCTGAGATTGCTGAAGTTCGTGCTCTTGTTGTGAATGAAGAGAATGAACTTGGTGAAACTGCTTTGTTTACTGCTGCTGAAAAGGGTCATCTTGATGTTGTTAAGGAGTTGTTGAAACATTCAACTCTTCAAACTGTTTCTAAAAAGAATCGATCTGGTTTTGATCCTTTGCATATTGCTGCTAGTCAAGGACATCATGCCATTGTTCAGGTTTTACTAGATTATGACCCAAGCTTAAGCAAAACTATTGGTCCATCCAACGCCACTCCACTTATAACAGCAGCGACGAGAGGGCACGTCGAAGTGGTGAATGAACTTCTGTCAAAGGATGGCAGCTTGTTGGAAATTGCAAGATCCAATGGAAAAAATGCTTTGCATTTAGCTGCTCGTCCGGGCCATACAGAAATCGTGAAAGCCTTGCTCAGCAAAGACCCTCAATTGGCTCGGAGGACTGACAAGAAAGGGCAAACTGCATTGCATATGGCTGTAAAAGGGCAGAGCTGTGACGTGGTGAAATTGCTTCTTGATGCAGATGCTGCTATTGTTATGCTTCCTGACAAATTTGGCAACACAGCATTGCATGTGGCAACCAGGAAAAAGCGAGTAGAGATAGTGAATGAGTTGTTACTCCTGCCAGACACAAACGTAAATGCATTAACACGAGACCACAAAACAGCCCTTGACATTGCTGAAAATCTTCCTCTCTCTGAAGAGTCATCAGATATAAAGGACATCCTCTCTCGATATGGGGCACTTAGAGCTAACGAGCTCAACCAACCAAGGGACGAACTGAGGAAAACGGTTACACAAATTAAGAAAGATGTTCACACACAGCTGGAACAAACCAAGAGAACCAACAAAAATGTCCACAATATATCCAAAGAGCTGAGGAAACTCCACAGGGAAGGAATTAACAATGCCACAAACTCGGTGACAGTGGTGGCTGTGTTGTTTGCTACAGTTGCTTTTGCTGCTATATTCACCGTACCTGGTGGGGATAACGATGATGGATCAGGAGTGGTAGCGAGTTATTCTGCTTTTAAAATTTTCTTCATATTCAATGCTATTGCGCTTTTTACATCTTTGGCTGTTGTGGTTGTTCAAATTACCCTTGTTAGAGGTGAAACTAAAGCAGAGAAAAGGGTAGTTGAGGTGATTAACAAGCTCATGTGGTTGGCTTCTGTCTGTACCTCGGTGGCATTTATTGCCTCTTCGTACATAGTCGTCGGTCGGAGGAACGAGTGGGCTGCAATTCTGGTTACAGTTGTTGGAGGAGTGATAATATCCGGAGTTATTGGCACTATGACTTACTATGTAGTGAGGTCTAAGAGAACAAGATCCATGAGGAAGAAAGAGAAGCAGCTAGCCAGGAGAAGTGGATCCAACTCATGGCATCATTCAGAGTTCTCCAATTCCGAGGTTGATCGAATTTATGCGCTCTAA
Protein sequence

>Msa0880960

MTSNFNLPGGAQTQRDSEKGTMMTPTQNPLSEISPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDIDSQIMGTLSGDDDVDLNAEIAEVRALVVNEENELGETALFTAAEKGHLDVVKELLKHSTLQTVSKKNRSGFDPLHIAASQGHHAIVQVLLDYDPSLSKTIGPSNATPLITAATRGHVEVVNELLSKDGSLLEIARSNGKNALHLAARPGHTEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLDADAAIVMLPDKFGNTALHVATRKKRVEIVNELLLLPDTNVNALTRDHKTALDIAENLPLSEESSDIKDILSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNDDGSGVVASYSAFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRNEWAAILVTVVGGVIISGVIGTMTYYVVRSKRTRSMRKKEKQLARRSGSNSWHHSEFSNSEVDRIYAL*