AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046150

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046150 MtrunA17_Chr1g0212971 99.157 593 5 0 1 593 1 593 0.0 1201
Msa0046150 MtrunA17_Chr7g0263471 73.042 549 141 4 46 593 40 582 0.0 791
Msa0046150 MtrunA17_Chr2g0327711 46.209 554 253 9 61 593 15 544 2.55e-147 436
Msa0046150 MtrunA17_Chr4g0030551 47.126 522 237 8 58 563 16 514 2.40e-145 431
Msa0046150 MtrunA17_Chr7g0276681 45.421 546 255 7 61 593 31 546 7.71e-137 409
Msa0046150 MtrunA17_Chr1g0161231 45.436 482 246 7 127 593 52 531 5.60e-128 386
Msa0046150 MtrunA17_Chr7g0263421 42.620 542 273 7 66 593 3 520 2.95e-125 379
Msa0046150 MtrunA17_Chr8g0391711 43.659 481 256 4 127 593 59 538 6.24e-125 378
Msa0046150 MtrunA17_Chr2g0331191 22.951 610 356 14 4 567 69 610 8.96e-27 115
Msa0046150 MtrunA17_Chr2g0331191 25.403 248 184 1 96 343 1 247 1.05e-20 96.3
Msa0046150 MtrunA17_Chr3g0136651 22.707 458 298 12 138 577 8 427 3.84e-25 108
Msa0046150 MtrunA17_Chr2g0331201 28.896 308 202 5 74 367 37 341 1.77e-21 99.0
Msa0046150 MtrunA17_Chr2g0331201 26.949 449 250 15 130 522 137 563 1.68e-20 95.9
Msa0046150 MtrunA17_Chr2g0331201 26.471 238 173 2 107 343 11 247 4.28e-19 91.3
Msa0046150 MtrunA17_Chr8g0361991 25.469 373 214 10 76 445 10 321 1.60e-19 91.7
Msa0046150 MtrunA17_Chr2g0328031 31.707 205 121 4 134 322 14 215 1.99e-19 91.3
Msa0046150 MtrunA17_Chr8g0370361 26.756 299 178 6 169 452 46 318 5.30e-19 90.1
Msa0046150 MtrunA17_Chr8g0367671 23.786 412 245 12 169 543 47 426 1.21e-18 89.0
Msa0046150 MtrunA17_Chr1g0178581 24.565 460 262 15 138 556 15 430 3.83e-18 87.4
Msa0046150 MtrunA17_Chr7g0233331 24.611 321 206 6 138 445 12 309 2.26e-16 81.6
Msa0046150 MtrunA17_Chr5g0439361 25.908 413 253 13 169 562 23 401 3.14e-16 81.3
Msa0046150 MtrunA17_Chr5g0439351 27.128 376 238 11 169 533 338 688 3.67e-16 82.0
Msa0046150 MtrunA17_Chr5g0439161 24.319 477 310 14 128 562 207 674 6.51e-16 81.3
Msa0046150 MtrunA17_Chr8g0369921 23.653 427 245 13 169 556 45 429 7.85e-16 80.1
Msa0046150 MtrunA17_Chr4g0031491 30.288 208 124 7 132 322 13 216 9.13e-16 80.1
Msa0046150 MtrunA17_Chr8g0368621 24.315 292 180 6 169 445 42 307 2.74e-15 77.4
Msa0046150 MtrunA17_Chr3g0100301 24.552 391 245 14 189 542 15 392 2.94e-15 78.2
Msa0046150 MtrunA17_Chr7g0262731 27.917 240 158 6 135 361 9 246 3.95e-15 78.6
Msa0046150 MtrunA17_Chr7g0221531 23.099 355 208 9 169 488 44 368 1.99e-14 75.5
Msa0046150 MtrunA17_Chr8g0354071 23.684 342 198 10 177 480 2 318 2.79e-14 75.1
Msa0046150 MtrunA17_Chr8g0364031 25.000 336 200 10 138 453 13 316 5.79e-14 74.3
Msa0046150 MtrunA17_Chr5g0418551 33.708 178 111 5 132 306 20 193 1.02e-13 71.2
Msa0046150 MtrunA17_Chr7g0263431 71.429 49 13 1 274 321 1 49 1.26e-13 65.5
Msa0046150 MtrunA17_Chr3g0093531 23.684 342 198 10 177 480 2 318 1.90e-13 72.4
Msa0046150 MtrunA17_Chr3g0083331 24.917 301 178 9 169 445 45 321 2.71e-13 72.4
Msa0046150 MtrunA17_Chr8g0353311 21.809 376 234 9 169 509 49 399 4.61e-13 71.6
Msa0046150 MtrunA17_Chr8g0376971 26.183 317 194 9 72 352 77 389 6.24e-13 71.6
Msa0046150 MtrunA17_Chr1g0211241 29.952 207 137 5 120 322 120 322 1.10e-12 70.9
Msa0046150 MtrunA17_Chr3g0122941 28.342 187 125 3 131 309 105 290 1.56e-12 70.5
Msa0046150 MtrunA17_Chr3g0122941 27.208 283 173 9 100 355 108 384 2.92e-12 69.7
Msa0046150 MtrunA17_Chr6g0461061 27.935 247 158 7 90 323 125 364 1.63e-11 67.0
Msa0046150 MtrunA17_Chr5g0410201 25.284 352 185 11 213 544 7 300 1.71e-11 65.9
Msa0046150 MtrunA17_Chr4g0064931 30.319 188 127 4 135 322 40 223 2.05e-11 67.0
Msa0046150 MtrunA17_Chr7g0262761 27.922 154 100 3 169 312 47 199 2.36e-11 63.5
Msa0046150 MtrunA17_Chr4g0073161 30.392 204 98 6 128 294 9 205 3.05e-11 66.2
Msa0046150 MtrunA17_Chr1g0196261 28.947 228 134 8 114 317 198 421 5.70e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046150 AT3G12360.1 80.684 585 104 4 14 593 10 590 0.0 954
Msa0046150 AT3G12360.2 80.895 581 102 4 18 593 2 578 0.0 950
Msa0046150 AT3G09550.1 71.502 586 148 3 24 593 25 607 0.0 833
Msa0046150 AT3G09550.3 71.502 586 148 3 24 593 25 607 0.0 833
Msa0046150 AT3G09550.2 71.502 586 148 3 24 593 32 614 0.0 832
Msa0046150 AT2G31820.1 43.534 549 271 7 60 593 138 662 8.01e-138 416
Msa0046150 AT1G05640.1 44.404 554 270 7 56 593 96 627 7.62e-136 410
Msa0046150 AT5G60070.1 46.595 558 244 13 61 593 20 548 3.40e-135 405
Msa0046150 AT2G01680.1 43.110 508 273 8 99 593 28 532 2.25e-129 390
Msa0046150 AT1G07710.2 44.565 552 264 5 61 593 15 543 2.44e-129 390
Msa0046150 AT1G07710.1 44.565 552 264 5 61 593 15 543 2.44e-129 390
Msa0046150 AT5G02620.4 43.774 514 248 7 61 556 5 495 4.25e-124 376
Msa0046150 AT5G02620.1 43.774 514 248 7 61 556 5 495 4.25e-124 376
Msa0046150 AT5G02620.3 43.774 514 248 7 61 556 5 495 4.25e-124 376
Msa0046150 AT5G02620.5 41.899 537 248 8 61 556 5 518 1.15e-118 363
Msa0046150 AT5G02620.2 41.899 537 248 8 61 556 5 518 1.15e-118 363
Msa0046150 AT1G10340.1 25.202 496 309 12 111 552 51 538 2.25e-34 138
Msa0046150 AT5G54710.1 27.308 520 284 17 68 552 97 557 1.49e-33 135
Msa0046150 AT5G54710.2 27.308 520 284 17 68 552 142 602 2.33e-33 135
Msa0046150 AT1G10340.2 24.593 492 313 11 111 552 51 534 2.38e-33 135
Msa0046150 AT1G34050.1 26.145 524 294 15 108 554 28 535 6.31e-33 134
Msa0046150 AT2G24600.3 26.892 502 290 18 72 538 70 529 3.55e-32 131
Msa0046150 AT2G24600.4 26.892 502 290 18 72 538 70 529 3.55e-32 131
Msa0046150 AT4G03500.2 26.047 549 280 17 58 522 54 560 2.29e-30 126
Msa0046150 AT4G03500.3 26.047 549 280 17 58 522 54 560 2.29e-30 126
Msa0046150 AT4G03500.1 26.047 549 280 17 58 522 77 583 2.43e-30 126
Msa0046150 AT1G03670.1 25.581 516 328 9 74 562 107 593 2.56e-26 114
Msa0046150 AT4G03490.3 27.674 430 267 12 133 551 180 576 5.97e-25 110
Msa0046150 AT4G03490.5 27.830 424 262 12 133 545 170 560 7.94e-25 109
Msa0046150 AT4G03490.4 27.830 424 262 12 133 545 180 570 8.14e-25 109
Msa0046150 AT4G03460.2 26.406 409 256 8 128 522 158 535 8.35e-24 106
Msa0046150 AT4G03460.1 26.406 409 256 8 128 522 190 567 9.03e-24 106
Msa0046150 AT4G03490.2 24.915 586 332 18 65 574 9 562 1.03e-23 106
Msa0046150 AT5G50140.1 22.913 515 297 16 126 563 22 513 1.05e-23 105
Msa0046150 AT4G03490.1 25.277 542 318 15 65 551 19 528 2.42e-23 105
Msa0046150 AT5G54700.2 28.435 313 159 9 223 523 20 279 1.39e-22 99.8
Msa0046150 AT4G10720.1 24.096 415 258 12 169 559 40 421 3.32e-22 100
Msa0046150 AT5G54700.1 27.809 356 182 12 202 523 2 316 6.75e-22 99.8
Msa0046150 AT4G10720.2 25.076 327 210 6 169 477 40 349 1.96e-21 97.4
Msa0046150 AT4G14390.2 24.722 449 281 11 128 556 226 637 2.16e-20 95.9
Msa0046150 AT4G14390.4 24.722 449 281 11 128 556 245 656 2.63e-20 95.5
Msa0046150 AT4G14390.1 24.889 450 280 12 128 556 245 657 2.98e-20 95.5
Msa0046150 AT4G03480.1 26.076 395 232 9 118 482 295 659 1.57e-19 93.2
Msa0046150 AT4G03480.2 26.076 395 232 9 118 482 292 656 1.65e-19 93.2
Msa0046150 AT4G05040.3 28.736 348 199 9 118 447 211 527 9.01e-19 90.5
Msa0046150 AT4G05040.2 28.736 348 199 9 118 447 211 527 9.01e-19 90.5
Msa0046150 AT4G05040.5 28.736 348 199 9 118 447 211 527 9.01e-19 90.5
Msa0046150 AT4G05040.4 28.736 348 199 9 118 447 211 527 9.01e-19 90.5
Msa0046150 AT4G05040.1 28.736 348 199 9 118 447 211 527 9.01e-19 90.5
Msa0046150 AT4G05040.6 28.736 348 199 9 118 447 211 527 9.01e-19 90.5
Msa0046150 AT4G05040.7 28.736 348 199 9 118 447 211 527 9.01e-19 90.5
Msa0046150 AT5G15500.2 23.427 461 288 15 130 559 1 427 2.70e-18 88.2
Msa0046150 AT2G24600.2 26.420 405 232 14 72 450 70 434 1.75e-17 86.3
Msa0046150 AT2G24600.1 26.420 405 232 14 72 450 70 434 1.75e-17 86.3
Msa0046150 AT4G03450.2 24.505 555 306 17 58 528 45 570 1.81e-17 86.7
Msa0046150 AT5G51160.1 25.000 352 198 8 157 478 38 353 2.38e-17 85.5
Msa0046150 AT4G03450.1 24.505 555 306 17 58 528 45 570 5.28e-17 85.1
Msa0046150 AT4G03470.1 26.044 503 294 18 77 542 157 618 1.34e-16 84.0
Msa0046150 AT3G04140.1 27.622 286 160 8 100 342 105 386 2.92e-16 82.8
Msa0046150 AT1G14500.1 22.769 325 215 5 169 475 40 346 3.84e-15 78.6
Msa0046150 AT2G03430.1 34.659 176 106 5 135 306 16 186 8.50e-15 74.7
Msa0046150 AT4G14390.3 26.748 329 195 8 128 443 226 521 4.92e-13 72.4
Msa0046150 AT5G54620.1 29.570 186 119 2 169 342 40 225 8.08e-13 71.2
Msa0046150 AT5G54610.1 27.717 184 123 2 169 342 40 223 8.13e-13 71.2
Msa0046150 AT3G18670.1 23.111 450 296 12 123 530 113 554 1.09e-12 71.2
Msa0046150 AT2G28840.1 27.273 209 129 7 132 322 12 215 2.01e-12 70.1
Msa0046150 AT4G03440.1 23.126 467 308 12 104 550 258 693 3.95e-12 69.7
Msa0046150 AT4G03440.2 23.126 467 308 12 104 550 251 686 4.36e-12 69.7
Msa0046150 AT4G03440.3 23.126 467 308 12 104 550 251 686 4.36e-12 69.7
Msa0046150 AT4G14400.2 23.242 512 310 20 75 538 71 547 4.01e-11 66.2
Msa0046150 AT4G14400.3 23.242 512 310 20 75 538 71 547 4.01e-11 66.2
Msa0046150 AT3G18670.2 23.684 304 183 7 236 530 346 609 4.70e-11 66.2
Msa0046150 AT4G14400.1 23.242 512 310 20 75 538 137 613 5.68e-11 65.9

Find 168 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTGCATATGGCTGTAAA+AGG 0.222840 1_1:+78179077 Msa0046150:CDS
TTATCCTTTCCAACGTAATT+TGG 0.223179 1_1:-78180722 None:intergenic
TGATATTGATTCTCAGATAA+TGG 0.227356 1_1:+78177825 Msa0046150:CDS
TAAGCTGCTGTTGTTGTTAT+AGG 0.245673 1_1:+78181015 Msa0046150:three_prime_UTR
AATCATCATAATAATAATTT+AGG 0.249295 1_1:-78177357 None:intergenic
GTGGAGTTTCCTCAGCTCTT+TGG 0.250605 1_1:-78180147 None:intergenic
GTTATGCTTCCTGACAAATT+TGG 0.259995 1_1:+78179149 Msa0046150:CDS
GAAAGGAAAGAGGGAGGAAA+TGG 0.261658 1_1:-78177239 None:intergenic
GAACGAGTGGGCTGCAATTC+TGG 0.267500 1_1:+78180505 Msa0046150:CDS
ACCTCCAATTTCAACCTTCC+AGG 0.283929 1_1:+78177444 Msa0046150:CDS
ACTCAAAGAGATTCAGAAAA+AGG 0.285730 1_1:+78177580 Msa0046150:CDS
AAGGACATCCTCTCTCGATA+TGG 0.290107 1_1:+78179996 Msa0046150:CDS
CCAACCTGGAAGGTTGAAAT+TGG 0.303178 1_1:-78177448 None:intergenic
GTTATAGGATCATAACAAAT+TGG 0.307029 1_1:+78181030 Msa0046150:three_prime_UTR
TTCATTTGCAGCCATTGTTC+AGG 0.330505 1_1:+78178794 Msa0046150:intron
CTGCTTCTCTTTCTTCCTCA+TGG 0.331730 1_1:-78180609 None:intergenic
GCAATTCTGGTTACAGTTGT+TGG 0.335512 1_1:+78180518 Msa0046150:CDS
GATATTGATTCTCAGATAAT+GGG 0.350929 1_1:+78177826 Msa0046150:CDS
AATTCGATCAACCTCGGAAT+TGG 0.351942 1_1:-78180678 None:intergenic
AAAGGAAAGAGGGAGGAAAT+GGG 0.356439 1_1:-78177238 None:intergenic
TGAAGAGTCATCAGATATAA+AGG 0.366092 1_1:+78179977 Msa0046150:CDS
TAATAAGTGTTGGCTTTGAT+TGG 0.372963 1_1:-78177298 None:intergenic
TTTGTTTACTGCTGCTGAAA+AGG 0.377535 1_1:+78177945 Msa0046150:CDS
AGATGGCGACGGAGATATTT+CGG 0.380641 1_1:-78177635 None:intergenic
GTTCAAATTACCCTTGTTAG+AGG 0.385400 1_1:+78180368 Msa0046150:CDS
GTGATAATATCCGGAGTTAT+TGG 0.388823 1_1:+78180545 Msa0046150:CDS
GTGAAACTAAAGCAGAGAAA+AGG 0.392404 1_1:+78180390 Msa0046150:CDS
TTTGCATTTAGCTGCTCGTC+CGG 0.403120 1_1:+78178977 Msa0046150:CDS
GTCAAAGGATGGCAGCTTGT+TGG 0.404723 1_1:+78178926 Msa0046150:CDS
GGGTCATCTTGATGTTGTTA+AGG 0.408314 1_1:+78177966 Msa0046150:CDS
AGAAAGAGAAGCAGCTAGCC+AGG 0.411228 1_1:+78180618 Msa0046150:CDS
AGGACATCCTCTCTCGATAT+GGG 0.415929 1_1:+78179997 Msa0046150:CDS
CACCACTGTCACCGAGTTTG+TGG 0.435710 1_1:-78180189 None:intergenic
CTCGTCGCTGCTGTTATAAG+TGG 0.455896 1_1:-78178873 None:intergenic
TCCGTCGTCCGCGACGGCGC+CGG 0.456322 1_1:+78177657 Msa0046150:CDS
ATGGGAAAGTCGTGAGAAAG+AGG 0.462631 1_1:-78177220 None:intergenic
AGGCTTTCACGATTTCTGTA+TGG 0.466846 1_1:-78179001 None:intergenic
TTGCATTTAGCTGCTCGTCC+GGG 0.469773 1_1:+78178978 Msa0046150:CDS
GCTGCTATATTCACCGTACC+TGG 0.472210 1_1:+78180239 Msa0046150:CDS
TCCTCAGTTCGTCCCTTGGT+TGG 0.473921 1_1:-78180043 None:intergenic
GAGTGGAAGGAAAGGAAAGA+GGG 0.474346 1_1:-78177248 None:intergenic
CATTTACGTTTGTGTCTGGC+AGG 0.475438 1_1:-78179899 None:intergenic
TTGTTTACTGCTGCTGAAAA+GGG 0.479987 1_1:+78177946 Msa0046150:CDS
GCTCAGCAAAGACCCTCAAT+TGG 0.481998 1_1:+78179025 Msa0046150:CDS
CTTTAGTTTCACCTCTAACA+AGG 0.482809 1_1:-78180379 None:intergenic
CCAAGCTTAAGCAAAACTAT+TGG 0.486154 1_1:+78178834 Msa0046150:CDS
GAAAAGATGAGTGGAAGGAA+AGG 0.490183 1_1:-78177256 None:intergenic
TGAGTTGGATCCACTTCTCC+TGG 0.491866 1_1:-78180636 None:intergenic
GGGGATAACGATGATGGATC+AGG 0.492044 1_1:+78180263 Msa0046150:CDS
CAGTCCTCCGAGCCAATTGA+GGG 0.492228 1_1:-78179037 None:intergenic
TAATAATAATTTAGGAAGGA+AGG 0.493048 1_1:-78177349 None:intergenic
TCCTTTCAAACTCAGGAAAA+CGG 0.494021 1_1:+78177686 Msa0046150:CDS
TGAGTGGAAGGAAAGGAAAG+AGG 0.495388 1_1:-78177249 None:intergenic
TGAAACTAAAGCAGAGAAAA+GGG 0.501105 1_1:+78180391 Msa0046150:CDS
AGGGCAAACTGCATTGCATA+TGG 0.501695 1_1:+78179067 Msa0046150:CDS
TCAGCTCTTTGGATATATTG+TGG 0.502735 1_1:-78180136 None:intergenic
GGTCATGATAGAAGAGTAGA+GGG 0.503098 1_1:-78177424 None:intergenic
ATCGTTATCCCCACCAGGTA+CGG 0.503271 1_1:-78180252 None:intergenic
TTGAGGGTCTTTGCTGAGCA+AGG 0.503619 1_1:-78179021 None:intergenic
AATGCATTTACGTTTGTGTC+TGG 0.503703 1_1:-78179903 None:intergenic
TTGGAAATTGCAAGATCCAA+TGG 0.508338 1_1:+78178945 Msa0046150:CDS
AAGTACGTGAAGCAAGTAAC+GGG 0.508570 1_1:+78177730 Msa0046150:CDS
GCTCGGAGGACTGACAAGAA+AGG 0.509842 1_1:+78179047 Msa0046150:CDS
AAAGAGAAAAGATGAGTGGA+AGG 0.510130 1_1:-78177261 None:intergenic
GACGGAGATATTTCGGAAAG+TGG 0.514348 1_1:-78177628 None:intergenic
CTCGGAGGACTGACAAGAAA+GGG 0.519611 1_1:+78179048 Msa0046150:CDS
TTCACGATTTCTGTATGGCC+CGG 0.525638 1_1:-78178996 None:intergenic
TATGCATTTGTATAAATCAC+AGG 0.525663 1_1:+78181112 Msa0046150:three_prime_UTR
GTTGGAGGAGTGATAATATC+CGG 0.527167 1_1:+78180536 Msa0046150:CDS
GCCGGCGCCGTCGCGGACGA+CGG 0.529146 1_1:-78177658 None:intergenic
CATTGCATATGGCTGTAAAA+GGG 0.531587 1_1:+78179078 Msa0046150:CDS
AAGACCAAATTACGTTGGAA+AGG 0.532286 1_1:+78180718 Msa0046150:three_prime_UTR
GAAAGATGTTCACACACAGC+TGG 0.535788 1_1:+78180085 Msa0046150:CDS
CCTGGTGGGGATAACGATGA+TGG 0.535860 1_1:+78180257 Msa0046150:CDS
GCCATCTCCGTCGTCCGCGA+CGG 0.536247 1_1:+78177651 Msa0046150:CDS
GCTGTGTTGCCAAATTTGTC+AGG 0.537540 1_1:-78179158 None:intergenic
GGAAAACGGATCGATCAAGC+AGG 0.537963 1_1:+78177700 Msa0046150:CDS
CTATATTCACCGTACCTGGT+GGG 0.538227 1_1:+78180243 Msa0046150:CDS
CAGCATTGCATGTGGCAACC+AGG 0.541967 1_1:+78179177 Msa0046150:CDS
AAGCAGCTAGCCAGGAGAAG+TGG 0.542236 1_1:+78180626 Msa0046150:CDS
TCAGTCCTCCGAGCCAATTG+AGG 0.545108 1_1:-78179038 None:intergenic
TCGGAAAGTGGGTTCTGTGT+TGG 0.547229 1_1:-78177616 None:intergenic
GACTAGAGCCGGCGCCGTCG+CGG 0.548417 1_1:-78177665 None:intergenic
GAAAGTCGTGAGAAAGAGGG+AGG 0.548432 1_1:-78177216 None:intergenic
TTGCATATTGCTGCTAGTCA+AGG 0.549825 1_1:+78178051 Msa0046150:CDS
CAGATAATGGGTACTTTGAG+TGG 0.549949 1_1:+78177838 Msa0046150:CDS
TGGAAGGAAAGGAAAGAGGG+AGG 0.550810 1_1:-78177245 None:intergenic
AAGTCGTGAGAAAGAGGGAG+GGG 0.550978 1_1:-78177214 None:intergenic
TGGGAAAGTCGTGAGAAAGA+GGG 0.551251 1_1:-78177219 None:intergenic
CTCTGAATGATGCCATGAGT+TGG 0.551504 1_1:-78180651 None:intergenic
AAGAGCTGAGGAAACTCCAC+AGG 0.552962 1_1:+78180150 Msa0046150:CDS
ATCTATGTAAACTCTTGAAG+TGG 0.553547 1_1:-78180779 None:intergenic
ATCTATGTAAACTCTTGAAG+TGG 0.553547 1_1:-78180949 None:intergenic
ATTCTGGTTACAGTTGTTGG+AGG 0.554005 1_1:+78180521 Msa0046150:CDS
GATTAACAAGCTCATGTGGT+TGG 0.554304 1_1:+78180424 Msa0046150:CDS
AAGGGACGAACTGAGGAAAA+CGG 0.554349 1_1:+78180049 Msa0046150:CDS
AGGTCATGATAGAAGAGTAG+AGG 0.556929 1_1:-78177425 None:intergenic
AAAGTCGTGAGAAAGAGGGA+GGG 0.557510 1_1:-78177215 None:intergenic
ACCTGGAAGGTTGAAATTGG+AGG 0.558297 1_1:-78177445 None:intergenic
GCCGTCGCGGACGACGGAGA+TGG 0.559929 1_1:-78177652 None:intergenic
CCATCATCGTTATCCCCACC+AGG 0.564948 1_1:-78180257 None:intergenic
TTTAGTTTCACCTCTAACAA+GGG 0.565107 1_1:-78180378 None:intergenic
GTTTGAAGACCAAATTACGT+TGG 0.566835 1_1:+78180713 Msa0046150:three_prime_UTR
GAGTTTGAAAGGACTAGAGC+CGG 0.567456 1_1:-78177676 None:intergenic
GCAAAGACCCTCAATTGGCT+CGG 0.569896 1_1:+78179030 Msa0046150:CDS
GCTCTAGTCCTTTCAAACTC+AGG 0.572097 1_1:+78177679 Msa0046150:CDS
CATTGTTAATTCCTTCCCTG+TGG 0.572226 1_1:-78180166 None:intergenic
AGCAGAGAAAAGGGTAGTTG+AGG 0.573019 1_1:+78180400 Msa0046150:CDS
TCGTCGGTCGGAGGAACGAG+TGG 0.574175 1_1:+78180492 Msa0046150:CDS
CGCTGCTGTTATAAGTGGAG+TGG 0.575162 1_1:-78178868 None:intergenic
GCTGCTAGTCAAGGACATCA+TGG 0.575482 1_1:+78178060 Msa0046150:CDS
ATAAGTGGAGTGGCGTTGGA+TGG 0.578501 1_1:-78178858 None:intergenic
GGAAGGAAGGATGAAAGTGA+AGG 0.582860 1_1:-78177336 None:intergenic
GCAGCTCAAAGAGGTGATGT+TGG 0.583391 1_1:+78177781 Msa0046150:CDS
GTGAATGAAGAGAATGAACT+TGG 0.587406 1_1:+78177913 Msa0046150:CDS
TCTGAGAATCAATATCAAGA+AGG 0.587872 1_1:-78177819 None:intergenic
ACGGAGATATTTCGGAAAGT+GGG 0.587917 1_1:-78177627 None:intergenic
TGTTATAAGTGGAGTGGCGT+TGG 0.592828 1_1:-78178862 None:intergenic
TTCAGAGTTCTCCAATTCCG+AGG 0.592884 1_1:+78180667 Msa0046150:CDS
GCATGAGTCATAATAAGTGT+TGG 0.594195 1_1:-78177308 None:intergenic
ATCATAATAATAATTTAGGA+AGG 0.594731 1_1:-78177353 None:intergenic
GCTATATTCACCGTACCTGG+TGG 0.598478 1_1:+78180242 Msa0046150:CDS
ATCTAGTAAAACCTGAACAA+TGG 0.600510 1_1:-78178805 None:intergenic
GCCTCTTCGTACATAGTCGT+CGG 0.600824 1_1:+78180476 Msa0046150:CDS
CGCATAAATTCGATCAACCT+CGG 0.601587 1_1:-78180684 None:intergenic
TGATAAAGAGAAAAGATGAG+TGG 0.602428 1_1:-78177265 None:intergenic
CGTACATAGTCGTCGGTCGG+AGG 0.602499 1_1:+78180483 Msa0046150:CDS
GTTGGCTTCTGTCTGTACCT+CGG 0.602568 1_1:+78180442 Msa0046150:CDS
CTGAGGAAACTCCACAGGGA+AGG 0.603249 1_1:+78180155 Msa0046150:CDS
TATATTCACCGTACCTGGTG+GGG 0.603908 1_1:+78180244 Msa0046150:CDS
GAAGTACGTGAAGCAAGTAA+CGG 0.604371 1_1:+78177729 Msa0046150:CDS
GGAGAAGTGGATCCAACTCA+TGG 0.605497 1_1:+78180639 Msa0046150:CDS
AGAAGAAGAACCAACCTGGA+AGG 0.609441 1_1:-78177458 None:intergenic
GACGAGAGGGCACGTCGAAG+TGG 0.609993 1_1:+78178890 Msa0046150:CDS
GGTGAATGAACTTCTGTCAA+AGG 0.612992 1_1:+78178911 Msa0046150:CDS
TTATAACAGCAGCGACGAGA+GGG 0.613377 1_1:+78178877 Msa0046150:CDS
AATGAACTTCTGTCAAAGGA+TGG 0.613527 1_1:+78178915 Msa0046150:CDS
TCTGATGACTCTTCAGAGAG+AGG 0.615975 1_1:-78179969 None:intergenic
AATTAACAATGCCACAAACT+CGG 0.616650 1_1:+78180178 Msa0046150:CDS
CGTCGGTCGGAGGAACGAGT+GGG 0.619749 1_1:+78180493 Msa0046150:CDS
ACCAACCAAGGGACGAACTG+AGG 0.620407 1_1:+78180042 Msa0046150:CDS
CTAACGAGCTCAACCAACCA+AGG 0.621035 1_1:+78180030 Msa0046150:CDS
CTTCATCTAGCAGCTCAAAG+AGG 0.623399 1_1:+78177772 Msa0046150:CDS
CTTCGTACATAGTCGTCGGT+CGG 0.624785 1_1:+78180480 Msa0046150:CDS
CTTATAACAGCAGCGACGAG+AGG 0.631608 1_1:+78178876 Msa0046150:CDS
TGCCACAAACTCGGTGACAG+TGG 0.632510 1_1:+78180187 Msa0046150:CDS
AGTCATAGTGCCAATAACTC+CGG 0.636725 1_1:-78180555 None:intergenic
TGGCAACACAGCATTGCATG+TGG 0.637663 1_1:+78179169 Msa0046150:CDS
GGACATCCTCTCTCGATATG+GGG 0.638757 1_1:+78179998 Msa0046150:CDS
TGACTAGCAGCAATATGCAA+AGG 0.639675 1_1:-78178048 None:intergenic
ACAATATATCCAAAGAGCTG+AGG 0.644642 1_1:+78180138 Msa0046150:CDS
AAGACCCTCAATTGGCTCGG+AGG 0.651684 1_1:+78179033 Msa0046150:CDS
GCGGACGACGGAGATGGCGA+CGG 0.652416 1_1:-78177646 None:intergenic
GGCTTCTGTCTGTACCTCGG+TGG 0.655940 1_1:+78180445 Msa0046150:CDS
GAAAACGGATCGATCAAGCA+GGG 0.663000 1_1:+78177701 Msa0046150:CDS
TAACGATGATGGATCAGGAG+TGG 0.663853 1_1:+78180268 Msa0046150:CDS
TAAGTGCCCCATATCGAGAG+AGG 0.665007 1_1:-78180004 None:intergenic
AGGTGATTAACAAGCTCATG+TGG 0.671742 1_1:+78180420 Msa0046150:CDS
ACCGACGACTATGTACGAAG+AGG 0.681066 1_1:-78180477 None:intergenic
CACAAACTCGGTGACAGTGG+TGG 0.691648 1_1:+78180190 Msa0046150:CDS
TAACGAGCTCAACCAACCAA+GGG 0.693605 1_1:+78180031 Msa0046150:CDS
CTATGACTTACTATGTAGTG+AGG 0.708286 1_1:+78180570 Msa0046150:CDS
CTAAGAGAACAAGATCCATG+AGG 0.720939 1_1:+78180594 Msa0046150:CDS
AGAGCTGAGGAAACTCCACA+GGG 0.730372 1_1:+78180151 Msa0046150:CDS
AAAAGGGCAGAGCTGTGACG+TGG 0.742175 1_1:+78179094 Msa0046150:CDS
GTCATGATAGAAGAGTAGAG+GGG 0.743790 1_1:-78177423 None:intergenic
AGAGGCAATAAATGCCACCG+AGG 0.784742 1_1:-78180459 None:intergenic
GATTTGTGAGAAGAATAACA+CGG 0.801731 1_1:+78181139 Msa0046150:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCATCATAATAATAATTT+AGG - chr1_1:78177360-78177379 None:intergenic 10.0%
!!! GTTTTGTATTTTTTTTTTTT+TGG + chr1_1:78178391-78178410 Msa0046150:intron 10.0%
!! ATCATAATAATAATTTAGGA+AGG - chr1_1:78177356-78177375 None:intergenic 15.0%
!!! TATTTTGCTTTTTGTAAAAA+TGG + chr1_1:78178172-78178191 Msa0046150:intron 15.0%
!!! ATTTTGCTTTTTGTAAAAAT+GGG + chr1_1:78178173-78178192 Msa0046150:intron 15.0%
!!! TTTTTTTAAGAAGCTATTAA+TGG + chr1_1:78178563-78178582 Msa0046150:intron 15.0%
!! AAAAATTAAAAGAAAACAAG+AGG - chr1_1:78179762-78179781 None:intergenic 15.0%
!!! AATATTAGATTTTTCATTCA+AGG - chr1_1:78179835-78179854 None:intergenic 15.0%
!! TAATAATAATTTAGGAAGGA+AGG - chr1_1:78177352-78177371 None:intergenic 20.0%
!!! TATTTTGAATGAATTGACTT+TGG + chr1_1:78178207-78178226 Msa0046150:intron 20.0%
!!! TTTTTTTTGGAACATATTCT+TGG + chr1_1:78178404-78178423 Msa0046150:intron 20.0%
!! AATTTAATCAGATATACTTC+TGG - chr1_1:78178452-78178471 None:intergenic 20.0%
!! TCATAATTGAGTTTCTTTAT+TGG - chr1_1:78178529-78178548 None:intergenic 20.0%
!! TAATACTACTACTACAAATA+TGG - chr1_1:78179336-78179355 None:intergenic 20.0%
!! GCAACTACTTAAATAAATAA+AGG - chr1_1:78179564-78179583 None:intergenic 20.0%
!!! TGTTATTTTGCTTTGAAAAT+TGG + chr1_1:78179638-78179657 Msa0046150:intron 20.0%
! TTACAGTGAAGTAAAAAGAT+GGG - chr1_1:78177493-78177512 None:intergenic 25.0%
! TTTACAGTGAAGTAAAAAGA+TGG - chr1_1:78177494-78177513 None:intergenic 25.0%
!!! TGATATTGATTCTCAGATAA+TGG + chr1_1:78177825-78177844 Msa0046150:CDS 25.0%
!!! GATATTGATTCTCAGATAAT+GGG + chr1_1:78177826-78177845 Msa0046150:CDS 25.0%
! AACATCAAAACAAAGGAAAA+AGG - chr1_1:78178133-78178152 None:intergenic 25.0%
!!! TTTTTCCTTTGTTTTGATGT+TGG + chr1_1:78178132-78178151 Msa0046150:intron 25.0%
!!! TTTTCCTTTGTTTTGATGTT+GGG + chr1_1:78178133-78178152 Msa0046150:intron 25.0%
! AAGGTAAAACGATTTATGTT+TGG + chr1_1:78178244-78178263 Msa0046150:intron 25.0%
! AGGTAAAACGATTTATGTTT+GGG + chr1_1:78178245-78178264 Msa0046150:intron 25.0%
! TTGAGTATTTATCTTGCTTA+AGG + chr1_1:78178500-78178519 Msa0046150:intron 25.0%
! CTCAATTATGATGCTATTAA+TGG + chr1_1:78178538-78178557 Msa0046150:intron 25.0%
! ATTAACTTACTCGAACAAAT+CGG + chr1_1:78179286-78179305 Msa0046150:intron 25.0%
! TTTAAGTAGTTGCAAGTATA+AGG + chr1_1:78179571-78179590 Msa0046150:intron 25.0%
! AAACATGTTATATGAGACAA+GGG + chr1_1:78179704-78179723 Msa0046150:intron 25.0%
!! TCAATTTTGTCTAGAAGTTT+TGG + chr1_1:78179735-78179754 Msa0046150:intron 25.0%
!! CAATTTTGTCTAGAAGTTTT+GGG + chr1_1:78179736-78179755 Msa0046150:intron 25.0%
!!! ATTGTTGTTTCTCAATTTCT+TGG + chr1_1:78179852-78179871 Msa0046150:intron 25.0%
!! TATATTGTGGACATTTTTGT+TGG - chr1_1:78180126-78180145 None:intergenic 25.0%
! GTTATAGGATCATAACAAAT+TGG + chr1_1:78181030-78181049 Msa0046150:three_prime_UTR 25.0%
! TATGCATTTGTATAAATCAC+AGG + chr1_1:78181112-78181131 Msa0046150:three_prime_UTR 25.0%
TGATAAAGAGAAAAGATGAG+TGG - chr1_1:78177268-78177287 None:intergenic 30.0%
!! TAATAAGTGTTGGCTTTGAT+TGG - chr1_1:78177301-78177320 None:intergenic 30.0%
TACAGTGAAGTAAAAAGATG+GGG - chr1_1:78177492-78177511 None:intergenic 30.0%
ACTCAAAGAGATTCAGAAAA+AGG + chr1_1:78177580-78177599 Msa0046150:CDS 30.0%
TCTGAGAATCAATATCAAGA+AGG - chr1_1:78177822-78177841 None:intergenic 30.0%
! GTTTCTAAAAAGAATCGATC+TGG + chr1_1:78178018-78178037 Msa0046150:CDS 30.0%
AAATCCCAACATCAAAACAA+AGG - chr1_1:78178140-78178159 None:intergenic 30.0%
!!! TTGTTTTGATGTTGGGATTT+TGG + chr1_1:78178140-78178159 Msa0046150:intron 30.0%
!! TTTGGCTAAAATTGAGTTGA+AGG + chr1_1:78178225-78178244 Msa0046150:intron 30.0%
ACATAGCATTAACTCTACTA+CGG - chr1_1:78178634-78178653 None:intergenic 30.0%
AATAAGACAACGTTGATGTT+TGG - chr1_1:78178668-78178687 None:intergenic 30.0%
! AACATCAACGTTGTCTTATT+TGG + chr1_1:78178668-78178687 Msa0046150:intron 30.0%
AGATTACTACAAAGAACAGA+AGG - chr1_1:78178764-78178783 None:intergenic 30.0%
ATCTAGTAAAACCTGAACAA+TGG - chr1_1:78178808-78178827 None:intergenic 30.0%
!! CAATAGTTTTGCTTAAGCTT+GGG - chr1_1:78178836-78178855 None:intergenic 30.0%
!!! ATGCAAAGCATTTTTTCCAT+TGG - chr1_1:78178964-78178983 None:intergenic 30.0%
TCATCACTATATGTACTGTA+TGG - chr1_1:78179256-78179275 None:intergenic 30.0%
TTAACTTACTCGAACAAATC+GGG + chr1_1:78179287-78179306 Msa0046150:intron 30.0%
AAGTCTCCAATATTGAAAAC+AGG + chr1_1:78179373-78179392 Msa0046150:intron 30.0%
! TAGCTACCTGTTTTCAATAT+TGG - chr1_1:78179382-78179401 None:intergenic 30.0%
GTGCACACTACTTAAAAAAA+TGG - chr1_1:78179674-78179693 None:intergenic 30.0%
GAAACATGTTATATGAGACA+AGG + chr1_1:78179703-78179722 Msa0046150:intron 30.0%
! AAGATTTTCAGCAATGTCAA+GGG - chr1_1:78179949-78179968 None:intergenic 30.0%
TGAAGAGTCATCAGATATAA+AGG + chr1_1:78179977-78179996 Msa0046150:CDS 30.0%
AATTAACAATGCCACAAACT+CGG + chr1_1:78180178-78180197 Msa0046150:CDS 30.0%
!! TATTGCGCTTTTTACATCTT+TGG + chr1_1:78180334-78180353 Msa0046150:CDS 30.0%
! TTTAGTTTCACCTCTAACAA+GGG - chr1_1:78180381-78180400 None:intergenic 30.0%
TGAAACTAAAGCAGAGAAAA+GGG + chr1_1:78180391-78180410 Msa0046150:CDS 30.0%
TTATCCTTTCCAACGTAATT+TGG - chr1_1:78180725-78180744 None:intergenic 30.0%
ATCTATGTAAACTCTTGAAG+TGG - chr1_1:78180782-78180801 None:intergenic 30.0%
ATCTATGTAAACTCTTGAAG+TGG - chr1_1:78180782-78180801 None:intergenic 30.0%
ATCTATGTAAACTCTTGAAG+TGG - chr1_1:78180782-78180801 None:intergenic 30.0%
GATTTGTGAGAAGAATAACA+CGG + chr1_1:78181139-78181158 Msa0046150:three_prime_UTR 30.0%
AAAGAGAAAAGATGAGTGGA+AGG - chr1_1:78177264-78177283 None:intergenic 35.0%
GCATGAGTCATAATAAGTGT+TGG - chr1_1:78177311-78177330 None:intergenic 35.0%
ACAGTGAAGTAAAAAGATGG+GGG - chr1_1:78177491-78177510 None:intergenic 35.0%
! TACGCTTTTACGTTTATTGC+AGG + chr1_1:78177547-78177566 Msa0046150:intron 35.0%
TCCTTTCAAACTCAGGAAAA+CGG + chr1_1:78177686-78177705 Msa0046150:CDS 35.0%
GTGAATGAAGAGAATGAACT+TGG + chr1_1:78177913-78177932 Msa0046150:CDS 35.0%
TTTGTTTACTGCTGCTGAAA+AGG + chr1_1:78177945-78177964 Msa0046150:CDS 35.0%
TTGTTTACTGCTGCTGAAAA+GGG + chr1_1:78177946-78177965 Msa0046150:CDS 35.0%
GCTTCAAGTAGAATCAGTTA+TGG + chr1_1:78178343-78178362 Msa0046150:intron 35.0%
TCAGTTATGGAGACAAAATC+AGG + chr1_1:78178356-78178375 Msa0046150:intron 35.0%
CTTGAGTAGCTTCAATTTGT+GGG + chr1_1:78178707-78178726 Msa0046150:intron 35.0%
! TAGCTTCAATTTGTGGGTTA+TGG + chr1_1:78178713-78178732 Msa0046150:intron 35.0%
!! CCAATAGTTTTGCTTAAGCT+TGG - chr1_1:78178837-78178856 None:intergenic 35.0%
CCAAGCTTAAGCAAAACTAT+TGG + chr1_1:78178834-78178853 Msa0046150:CDS 35.0%
AATGAACTTCTGTCAAAGGA+TGG + chr1_1:78178915-78178934 Msa0046150:CDS 35.0%
TTGGAAATTGCAAGATCCAA+TGG + chr1_1:78178945-78178964 Msa0046150:CDS 35.0%
CATTGCATATGGCTGTAAAA+GGG + chr1_1:78179078-78179097 Msa0046150:CDS 35.0%
GTTATGCTTCCTGACAAATT+TGG + chr1_1:78179149-78179168 Msa0046150:CDS 35.0%
TGCTACAAAAAATGCAAACG+AGG + chr1_1:78179406-78179425 Msa0046150:intron 35.0%
AAGTAGTTGCAAGTATAAGG+TGG + chr1_1:78179574-78179593 Msa0046150:intron 35.0%
ACATGCTCAAAAGTAACTAG+GGG - chr1_1:78179805-78179824 None:intergenic 35.0%
GACATGCTCAAAAGTAACTA+GGG - chr1_1:78179806-78179825 None:intergenic 35.0%
TGACATGCTCAAAAGTAACT+AGG - chr1_1:78179807-78179826 None:intergenic 35.0%
AATGCATTTACGTTTGTGTC+TGG - chr1_1:78179906-78179925 None:intergenic 35.0%
! GAAGATTTTCAGCAATGTCA+AGG - chr1_1:78179950-78179969 None:intergenic 35.0%
!!! GACATTTTTGTTGGTTCTCT+TGG - chr1_1:78180117-78180136 None:intergenic 35.0%
TCAGCTCTTTGGATATATTG+TGG - chr1_1:78180139-78180158 None:intergenic 35.0%
ACAATATATCCAAAGAGCTG+AGG + chr1_1:78180138-78180157 Msa0046150:CDS 35.0%
! TTTTACATCTTTGGCTGTTG+TGG + chr1_1:78180343-78180362 Msa0046150:CDS 35.0%
GTTCAAATTACCCTTGTTAG+AGG + chr1_1:78180368-78180387 Msa0046150:CDS 35.0%
! CTTTAGTTTCACCTCTAACA+AGG - chr1_1:78180382-78180401 None:intergenic 35.0%
GTGAAACTAAAGCAGAGAAA+AGG + chr1_1:78180390-78180409 Msa0046150:CDS 35.0%
GTGATAATATCCGGAGTTAT+TGG + chr1_1:78180545-78180564 Msa0046150:CDS 35.0%
CTATGACTTACTATGTAGTG+AGG + chr1_1:78180570-78180589 Msa0046150:CDS 35.0%
GTTTGAAGACCAAATTACGT+TGG + chr1_1:78180713-78180732 Msa0046150:three_prime_UTR 35.0%
AAGACCAAATTACGTTGGAA+AGG + chr1_1:78180718-78180737 Msa0046150:three_prime_UTR 35.0%
! TAAGCTGCTGTTGTTGTTAT+AGG + chr1_1:78181015-78181034 Msa0046150:three_prime_UTR 35.0%
AAAGGAAAGAGGGAGGAAAT+GGG - chr1_1:78177241-78177260 None:intergenic 40.0%
GAAAAGATGAGTGGAAGGAA+AGG - chr1_1:78177259-78177278 None:intergenic 40.0%
GTCATGATAGAAGAGTAGAG+GGG - chr1_1:78177426-78177445 None:intergenic 40.0%
GGTCATGATAGAAGAGTAGA+GGG - chr1_1:78177427-78177446 None:intergenic 40.0%
AGGTCATGATAGAAGAGTAG+AGG - chr1_1:78177428-78177447 None:intergenic 40.0%
AGATAGAAGAAGAACCAACC+TGG - chr1_1:78177465-78177484 None:intergenic 40.0%
! GCTTTTACGTTTATTGCAGG+TGG + chr1_1:78177550-78177569 Msa0046150:intron 40.0%
ACGGAGATATTTCGGAAAGT+GGG - chr1_1:78177630-78177649 None:intergenic 40.0%
! TCCGTTTTCCTGAGTTTGAA+AGG - chr1_1:78177690-78177709 None:intergenic 40.0%
GAAGTACGTGAAGCAAGTAA+CGG + chr1_1:78177729-78177748 Msa0046150:CDS 40.0%
AAGTACGTGAAGCAAGTAAC+GGG + chr1_1:78177730-78177749 Msa0046150:CDS 40.0%
!! CAGATAATGGGTACTTTGAG+TGG + chr1_1:78177838-78177857 Msa0046150:CDS 40.0%
GGGTCATCTTGATGTTGTTA+AGG + chr1_1:78177966-78177985 Msa0046150:CDS 40.0%
TGACTAGCAGCAATATGCAA+AGG - chr1_1:78178051-78178070 None:intergenic 40.0%
TTGCATATTGCTGCTAGTCA+AGG + chr1_1:78178051-78178070 Msa0046150:CDS 40.0%
GCTACTCAAGGTCTAACAAT+TGG - chr1_1:78178697-78178716 None:intergenic 40.0%
CCACAAATTGAAGCTACTCA+AGG - chr1_1:78178709-78178728 None:intergenic 40.0%
CCTTGAGTAGCTTCAATTTG+TGG + chr1_1:78178706-78178725 Msa0046150:intron 40.0%
TTCATTTGCAGCCATTGTTC+AGG + chr1_1:78178794-78178813 Msa0046150:intron 40.0%
GGTGAATGAACTTCTGTCAA+AGG + chr1_1:78178911-78178930 Msa0046150:CDS 40.0%
AGGCTTTCACGATTTCTGTA+TGG - chr1_1:78179004-78179023 None:intergenic 40.0%
GCATTGCATATGGCTGTAAA+AGG + chr1_1:78179077-78179096 Msa0046150:CDS 40.0%
CATTGTTAATTCCTTCCCTG+TGG - chr1_1:78180169-78180188 None:intergenic 40.0%
AGGTGATTAACAAGCTCATG+TGG + chr1_1:78180420-78180439 Msa0046150:CDS 40.0%
GATTAACAAGCTCATGTGGT+TGG + chr1_1:78180424-78180443 Msa0046150:CDS 40.0%
! GCAATTCTGGTTACAGTTGT+TGG + chr1_1:78180518-78180537 Msa0046150:CDS 40.0%
! ATTCTGGTTACAGTTGTTGG+AGG + chr1_1:78180521-78180540 Msa0046150:CDS 40.0%
GTTGGAGGAGTGATAATATC+CGG + chr1_1:78180536-78180555 Msa0046150:CDS 40.0%
AGTCATAGTGCCAATAACTC+CGG - chr1_1:78180558-78180577 None:intergenic 40.0%
CTAAGAGAACAAGATCCATG+AGG + chr1_1:78180594-78180613 Msa0046150:CDS 40.0%
AATTCGATCAACCTCGGAAT+TGG - chr1_1:78180681-78180700 None:intergenic 40.0%
CGCATAAATTCGATCAACCT+CGG - chr1_1:78180687-78180706 None:intergenic 40.0%
AAAGTCGTGAGAAAGAGGGA+GGG - chr1_1:78177218-78177237 None:intergenic 45.0%
TGGGAAAGTCGTGAGAAAGA+GGG - chr1_1:78177222-78177241 None:intergenic 45.0%
ATGGGAAAGTCGTGAGAAAG+AGG - chr1_1:78177223-78177242 None:intergenic 45.0%
GAAAGGAAAGAGGGAGGAAA+TGG - chr1_1:78177242-78177261 None:intergenic 45.0%
GAGTGGAAGGAAAGGAAAGA+GGG - chr1_1:78177251-78177270 None:intergenic 45.0%
TGAGTGGAAGGAAAGGAAAG+AGG - chr1_1:78177252-78177271 None:intergenic 45.0%
GGAAGGAAGGATGAAAGTGA+AGG - chr1_1:78177339-78177358 None:intergenic 45.0%
ACCTCCAATTTCAACCTTCC+AGG + chr1_1:78177444-78177463 Msa0046150:CDS 45.0%
ACCTGGAAGGTTGAAATTGG+AGG - chr1_1:78177448-78177467 None:intergenic 45.0%
CCAACCTGGAAGGTTGAAAT+TGG - chr1_1:78177451-78177470 None:intergenic 45.0%
CCAATTTCAACCTTCCAGGT+TGG + chr1_1:78177448-78177467 Msa0046150:intron 45.0%
AGAAGAAGAACCAACCTGGA+AGG - chr1_1:78177461-78177480 None:intergenic 45.0%
GACGGAGATATTTCGGAAAG+TGG - chr1_1:78177631-78177650 None:intergenic 45.0%
AGATGGCGACGGAGATATTT+CGG - chr1_1:78177638-78177657 None:intergenic 45.0%
GAGTTTGAAAGGACTAGAGC+CGG - chr1_1:78177679-78177698 None:intergenic 45.0%
GCTCTAGTCCTTTCAAACTC+AGG + chr1_1:78177679-78177698 Msa0046150:CDS 45.0%
GAAAACGGATCGATCAAGCA+GGG + chr1_1:78177701-78177720 Msa0046150:CDS 45.0%
CTTCATCTAGCAGCTCAAAG+AGG + chr1_1:78177772-78177791 Msa0046150:CDS 45.0%
TGTTATAAGTGGAGTGGCGT+TGG - chr1_1:78178865-78178884 None:intergenic 45.0%
TTATAACAGCAGCGACGAGA+GGG + chr1_1:78178877-78178896 Msa0046150:CDS 45.0%
TTTGCATTTAGCTGCTCGTC+CGG + chr1_1:78178977-78178996 Msa0046150:CDS 45.0%
TTCACGATTTCTGTATGGCC+CGG - chr1_1:78178999-78179018 None:intergenic 45.0%
AGGGCAAACTGCATTGCATA+TGG + chr1_1:78179067-78179086 Msa0046150:CDS 45.0%
GCTGTGTTGCCAAATTTGTC+AGG - chr1_1:78179161-78179180 None:intergenic 45.0%
AACCAGGAAAAAGCGAGTAG+AGG + chr1_1:78179193-78179212 Msa0046150:CDS 45.0%
!!! TACCTCTACTCGCTTTTTCC+TGG - chr1_1:78179198-78179217 None:intergenic 45.0%
CATTTACGTTTGTGTCTGGC+AGG - chr1_1:78179902-78179921 None:intergenic 45.0%
!! CAATGTCAAGGGCTGTTTTG+TGG - chr1_1:78179938-78179957 None:intergenic 45.0%
TCTGATGACTCTTCAGAGAG+AGG - chr1_1:78179972-78179991 None:intergenic 45.0%
AAGGACATCCTCTCTCGATA+TGG + chr1_1:78179996-78180015 Msa0046150:CDS 45.0%
AGGACATCCTCTCTCGATAT+GGG + chr1_1:78179997-78180016 Msa0046150:CDS 45.0%
TAACGAGCTCAACCAACCAA+GGG + chr1_1:78180031-78180050 Msa0046150:CDS 45.0%
AAGGGACGAACTGAGGAAAA+CGG + chr1_1:78180049-78180068 Msa0046150:CDS 45.0%
GAAAGATGTTCACACACAGC+TGG + chr1_1:78180085-78180104 Msa0046150:CDS 45.0%
CTATATTCACCGTACCTGGT+GGG + chr1_1:78180243-78180262 Msa0046150:CDS 45.0%
TATATTCACCGTACCTGGTG+GGG + chr1_1:78180244-78180263 Msa0046150:CDS 45.0%
!! TAACGATGATGGATCAGGAG+TGG + chr1_1:78180268-78180287 Msa0046150:CDS 45.0%
AGCAGAGAAAAGGGTAGTTG+AGG + chr1_1:78180400-78180419 Msa0046150:CDS 45.0%
CTGCTTCTCTTTCTTCCTCA+TGG - chr1_1:78180612-78180631 None:intergenic 45.0%
CTCTGAATGATGCCATGAGT+TGG - chr1_1:78180654-78180673 None:intergenic 45.0%
TTCAGAGTTCTCCAATTCCG+AGG + chr1_1:78180667-78180686 Msa0046150:CDS 45.0%
!! GAGTTTTGTGCACTTCAGCA+TGG + chr1_1:78181083-78181102 Msa0046150:three_prime_UTR 45.0%
AAGTCGTGAGAAAGAGGGAG+GGG - chr1_1:78177217-78177236 None:intergenic 50.0%
GAAAGTCGTGAGAAAGAGGG+AGG - chr1_1:78177219-78177238 None:intergenic 50.0%
TGGAAGGAAAGGAAAGAGGG+AGG - chr1_1:78177248-78177267 None:intergenic 50.0%
! TCGGAAAGTGGGTTCTGTGT+TGG - chr1_1:78177619-78177638 None:intergenic 50.0%
GGAAAACGGATCGATCAAGC+AGG + chr1_1:78177700-78177719 Msa0046150:CDS 50.0%
GCAGCTCAAAGAGGTGATGT+TGG + chr1_1:78177781-78177800 Msa0046150:CDS 50.0%
GCTGCTAGTCAAGGACATCA+TGG + chr1_1:78178060-78178079 Msa0046150:CDS 50.0%
! ATAAGTGGAGTGGCGTTGGA+TGG - chr1_1:78178861-78178880 None:intergenic 50.0%
CGCTGCTGTTATAAGTGGAG+TGG - chr1_1:78178871-78178890 None:intergenic 50.0%
CTCGTCGCTGCTGTTATAAG+TGG - chr1_1:78178876-78178895 None:intergenic 50.0%
CTTATAACAGCAGCGACGAG+AGG + chr1_1:78178876-78178895 Msa0046150:CDS 50.0%
GTCAAAGGATGGCAGCTTGT+TGG + chr1_1:78178926-78178945 Msa0046150:CDS 50.0%
TTGCATTTAGCTGCTCGTCC+GGG + chr1_1:78178978-78178997 Msa0046150:CDS 50.0%
TTGAGGGTCTTTGCTGAGCA+AGG - chr1_1:78179024-78179043 None:intergenic 50.0%
GCTCAGCAAAGACCCTCAAT+TGG + chr1_1:78179025-78179044 Msa0046150:CDS 50.0%
GCAAAGACCCTCAATTGGCT+CGG + chr1_1:78179030-78179049 Msa0046150:CDS 50.0%
CTCGGAGGACTGACAAGAAA+GGG + chr1_1:78179048-78179067 Msa0046150:CDS 50.0%
TGGCAACACAGCATTGCATG+TGG + chr1_1:78179169-78179188 Msa0046150:CDS 50.0%
GGACATCCTCTCTCGATATG+GGG + chr1_1:78179998-78180017 Msa0046150:CDS 50.0%
TAAGTGCCCCATATCGAGAG+AGG - chr1_1:78180007-78180026 None:intergenic 50.0%
CTAACGAGCTCAACCAACCA+AGG + chr1_1:78180030-78180049 Msa0046150:CDS 50.0%
! GTTTTCCTCAGTTCGTCCCT+TGG - chr1_1:78180050-78180069 None:intergenic 50.0%
GTGGAGTTTCCTCAGCTCTT+TGG - chr1_1:78180150-78180169 None:intergenic 50.0%
AAGAGCTGAGGAAACTCCAC+AGG + chr1_1:78180150-78180169 Msa0046150:CDS 50.0%
AGAGCTGAGGAAACTCCACA+GGG + chr1_1:78180151-78180170 Msa0046150:CDS 50.0%
GCTGCTATATTCACCGTACC+TGG + chr1_1:78180239-78180258 Msa0046150:CDS 50.0%
GCTATATTCACCGTACCTGG+TGG + chr1_1:78180242-78180261 Msa0046150:CDS 50.0%
ATCGTTATCCCCACCAGGTA+CGG - chr1_1:78180255-78180274 None:intergenic 50.0%
!! GGGGATAACGATGATGGATC+AGG + chr1_1:78180263-78180282 Msa0046150:CDS 50.0%
! GTTGGCTTCTGTCTGTACCT+CGG + chr1_1:78180442-78180461 Msa0046150:CDS 50.0%
AGAGGCAATAAATGCCACCG+AGG - chr1_1:78180462-78180481 None:intergenic 50.0%
GCCTCTTCGTACATAGTCGT+CGG + chr1_1:78180476-78180495 Msa0046150:CDS 50.0%
ACCGACGACTATGTACGAAG+AGG - chr1_1:78180480-78180499 None:intergenic 50.0%
CTTCGTACATAGTCGTCGGT+CGG + chr1_1:78180480-78180499 Msa0046150:CDS 50.0%
AGAAAGAGAAGCAGCTAGCC+AGG + chr1_1:78180618-78180637 Msa0046150:CDS 50.0%
! TGAGTTGGATCCACTTCTCC+TGG - chr1_1:78180639-78180658 None:intergenic 50.0%
GGAGAAGTGGATCCAACTCA+TGG + chr1_1:78180639-78180658 Msa0046150:CDS 50.0%
!! AAGACCCTCAATTGGCTCGG+AGG + chr1_1:78179033-78179052 Msa0046150:CDS 55.0%
CAGTCCTCCGAGCCAATTGA+GGG - chr1_1:78179040-78179059 None:intergenic 55.0%
TCAGTCCTCCGAGCCAATTG+AGG - chr1_1:78179041-78179060 None:intergenic 55.0%
GCTCGGAGGACTGACAAGAA+AGG + chr1_1:78179047-78179066 Msa0046150:CDS 55.0%
AAAAGGGCAGAGCTGTGACG+TGG + chr1_1:78179094-78179113 Msa0046150:CDS 55.0%
CAGCATTGCATGTGGCAACC+AGG + chr1_1:78179177-78179196 Msa0046150:CDS 55.0%
ACCAACCAAGGGACGAACTG+AGG + chr1_1:78180042-78180061 Msa0046150:CDS 55.0%
TCCTCAGTTCGTCCCTTGGT+TGG - chr1_1:78180046-78180065 None:intergenic 55.0%
CTGAGGAAACTCCACAGGGA+AGG + chr1_1:78180155-78180174 Msa0046150:CDS 55.0%
! TGCCACAAACTCGGTGACAG+TGG + chr1_1:78180187-78180206 Msa0046150:CDS 55.0%
CACCACTGTCACCGAGTTTG+TGG - chr1_1:78180192-78180211 None:intergenic 55.0%
! CACAAACTCGGTGACAGTGG+TGG + chr1_1:78180190-78180209 Msa0046150:CDS 55.0%
CCATCATCGTTATCCCCACC+AGG - chr1_1:78180260-78180279 None:intergenic 55.0%
CCTGGTGGGGATAACGATGA+TGG + chr1_1:78180257-78180276 Msa0046150:CDS 55.0%
!! GAACGAGTGGGCTGCAATTC+TGG + chr1_1:78180505-78180524 Msa0046150:CDS 55.0%
AAGCAGCTAGCCAGGAGAAG+TGG + chr1_1:78180626-78180645 Msa0046150:CDS 55.0%
GGCTTCTGTCTGTACCTCGG+TGG + chr1_1:78180445-78180464 Msa0046150:CDS 60.0%
CGTACATAGTCGTCGGTCGG+AGG + chr1_1:78180483-78180502 Msa0046150:CDS 60.0%
! GACGAGAGGGCACGTCGAAG+TGG + chr1_1:78178890-78178909 Msa0046150:CDS 65.0%
TCGTCGGTCGGAGGAACGAG+TGG + chr1_1:78180492-78180511 Msa0046150:CDS 65.0%
CGTCGGTCGGAGGAACGAGT+GGG + chr1_1:78180493-78180512 Msa0046150:CDS 65.0%
GCGGACGACGGAGATGGCGA+CGG - chr1_1:78177649-78177668 None:intergenic 70.0%
GCCATCTCCGTCGTCCGCGA+CGG + chr1_1:78177651-78177670 Msa0046150:CDS 70.0%
GCCGTCGCGGACGACGGAGA+TGG - chr1_1:78177655-78177674 None:intergenic 75.0%
GACTAGAGCCGGCGCCGTCG+CGG - chr1_1:78177668-78177687 None:intergenic 75.0%
! TCCGTCGTCCGCGACGGCGC+CGG + chr1_1:78177657-78177676 Msa0046150:CDS 80.0%
! GCCGGCGCCGTCGCGGACGA+CGG - chr1_1:78177661-78177680 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 78177207 78181211 78177207 ID=Msa0046150;Name=Msa0046150
chr1_1 mRNA 78177207 78181211 78177207 ID=Msa0046150-mRNA-1;Parent=Msa0046150;Name=Msa0046150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=234|1|1|1|0.75|0.6|5|414|593
chr1_1 exon 78177207 78177465 78177207 ID=Msa0046150-mRNA-1:exon:26803;Parent=Msa0046150-mRNA-1
chr1_1 exon 78177569 78178081 78177569 ID=Msa0046150-mRNA-1:exon:26804;Parent=Msa0046150-mRNA-1
chr1_1 exon 78178805 78179214 78178805 ID=Msa0046150-mRNA-1:exon:26805;Parent=Msa0046150-mRNA-1
chr1_1 exon 78179879 78180848 78179879 ID=Msa0046150-mRNA-1:exon:26806;Parent=Msa0046150-mRNA-1
chr1_1 exon 78180934 78181211 78180934 ID=Msa0046150-mRNA-1:exon:26807;Parent=Msa0046150-mRNA-1
chr1_1 five_prime_UTR 78177207 78177440 78177207 ID=Msa0046150-mRNA-1:five_prime_utr;Parent=Msa0046150-mRNA-1
chr1_1 CDS 78177441 78177465 78177441 ID=Msa0046150-mRNA-1:cds;Parent=Msa0046150-mRNA-1
chr1_1 CDS 78177569 78178081 78177569 ID=Msa0046150-mRNA-1:cds;Parent=Msa0046150-mRNA-1
chr1_1 CDS 78178805 78179214 78178805 ID=Msa0046150-mRNA-1:cds;Parent=Msa0046150-mRNA-1
chr1_1 CDS 78179879 78180712 78179879 ID=Msa0046150-mRNA-1:cds;Parent=Msa0046150-mRNA-1
chr1_1 three_prime_UTR 78180713 78180848 78180713 ID=Msa0046150-mRNA-1:three_prime_utr;Parent=Msa0046150-mRNA-1
chr1_1 three_prime_UTR 78180934 78181211 78180934 ID=Msa0046150-mRNA-1:three_prime_utr;Parent=Msa0046150-mRNA-1
Gene Sequence

>Msa0046150

ATGACCTCCAATTTCAACCTTCCAGGTGGAGCTCAAACTCAAAGAGATTCAGAAAAAGGAACGATGATGACACCAACACAGAACCCACTTTCCGAAATATCTCCGTCGCCATCTCCGTCGTCCGCGACGGCGCCGGCTCTAGTCCTTTCAAACTCAGGAAAACGGATCGATCAAGCAGGGAAGAAGAAGTACGTGAAGCAAGTAACGGGTCGTCACAACGACACAGAGCTTCATCTAGCAGCTCAAAGAGGTGATGTTGGTGCTGTGAGACAGATCCTTCTTGATATTGATTCTCAGATAATGGGTACTTTGAGTGGTGATGATGATGTTGATCTTAACGCTGAGATTGCTGAAGTTCGTGCTCTTGTTGTGAATGAAGAGAATGAACTTGGTGAAACTGCTTTGTTTACTGCTGCTGAAAAGGGTCATCTTGATGTTGTTAAGGAGTTGTTGAAACATTCAACTCTTCAAACTGTTTCTAAAAAGAATCGATCTGGTTTTGATCCTTTGCATATTGCTGCTAGTCAAGGACATCATGCCATTGTTCAGGTTTTACTAGATTATGACCCAAGCTTAAGCAAAACTATTGGTCCATCCAACGCCACTCCACTTATAACAGCAGCGACGAGAGGGCACGTCGAAGTGGTGAATGAACTTCTGTCAAAGGATGGCAGCTTGTTGGAAATTGCAAGATCCAATGGAAAAAATGCTTTGCATTTAGCTGCTCGTCCGGGCCATACAGAAATCGTGAAAGCCTTGCTCAGCAAAGACCCTCAATTGGCTCGGAGGACTGACAAGAAAGGGCAAACTGCATTGCATATGGCTGTAAAAGGGCAGAGCTGTGACGTGGTGAAATTGCTTCTTGATGCAGATGCTGCTATTGTTATGCTTCCTGACAAATTTGGCAACACAGCATTGCATGTGGCAACCAGGAAAAAGCGAGTAGAGATAGTGAATGAGTTGTTACTCCTGCCAGACACAAACGTAAATGCATTAACACGAGACCACAAAACAGCCCTTGACATTGCTGAAAATCTTCCTCTCTCTGAAGAGTCATCAGATATAAAGGACATCCTCTCTCGATATGGGGCACTTAGAGCTAACGAGCTCAACCAACCAAGGGACGAACTGAGGAAAACGGTTACACAAATTAAGAAAGATGTTCACACACAGCTGGAACAAACCAAGAGAACCAACAAAAATGTCCACAATATATCCAAAGAGCTGAGGAAACTCCACAGGGAAGGAATTAACAATGCCACAAACTCGGTGACAGTGGTGGCTGTGTTGTTTGCTACAGTTGCTTTTGCTGCTATATTCACCGTACCTGGTGGGGATAACGATGATGGATCAGGAGTGGTAGCGAGTTATTCTGCTTTTAAAATTTTCTTCATATTCAATGCTATTGCGCTTTTTACATCTTTGGCTGTTGTGGTTGTTCAAATTACCCTTGTTAGAGGTGAAACTAAAGCAGAGAAAAGGGTAGTTGAGGTGATTAACAAGCTCATGTGGTTGGCTTCTGTCTGTACCTCGGTGGCATTTATTGCCTCTTCGTACATAGTCGTCGGTCGGAGGAACGAGTGGGCTGCAATTCTGGTTACAGTTGTTGGAGGAGTGATAATATCCGGAGTTATTGGCACTATGACTTACTATGTAGTGAGGTCTAAGAGAACAAGATCCATGAGGAAGAAAGAGAAGCAGCTAGCCAGGAGAAGTGGATCCAACTCATGGCATCATTCAGAGTTCTCCAATTCCGAGGTTGATCGAATTTATGCGCTCTAA
Protein sequence

>Msa0046150

MTSNFNLPGGAQTQRDSEKGTMMTPTQNPLSEISPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDIDSQIMGTLSGDDDVDLNAEIAEVRALVVNEENELGETALFTAAEKGHLDVVKELLKHSTLQTVSKKNRSGFDPLHIAASQGHHAIVQVLLDYDPSLSKTIGPSNATPLITAATRGHVEVVNELLSKDGSLLEIARSNGKNALHLAARPGHTEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLDADAAIVMLPDKFGNTALHVATRKKRVEIVNELLLLPDTNVNALTRDHKTALDIAENLPLSEESSDIKDILSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNDDGSGVVASYSAFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRNEWAAILVTVVGGVIISGVIGTMTYYVVRSKRTRSMRKKEKQLARRSGSNSWHHSEFSNSEVDRIYAL*