AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0887950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0887950 MtrunA17_Chr6g0469571 93.548 124 8 0 1 124 1 124 7.23e-74 215
Msa0887950 MtrunA17_Chr6g0469551 91.935 124 10 0 1 124 1 124 2.82e-73 214
Msa0887950 MtrunA17_Chr6g0469591 91.935 124 10 0 1 124 1 124 2.14e-72 211
Msa0887950 MtrunA17_Chr6g0469681 58.915 129 46 3 1 124 1 127 2.60e-38 125
Msa0887950 MtrunA17_Chr7g0233231 55.556 108 46 1 1 108 1 106 6.94e-38 124
Msa0887950 MtrunA17_Chr7g0233251 57.944 107 43 1 1 107 1 105 5.26e-37 122
Msa0887950 MtrunA17_Chr7g0233211 55.140 107 46 1 1 107 1 105 9.27e-37 121
Msa0887950 MtrunA17_Chr7g0233191 56.075 107 45 1 1 107 1 105 2.02e-36 120
Msa0887950 MtrunA17_Chr7g0233201 56.075 107 45 1 1 107 1 105 4.06e-36 119
Msa0887950 MtrunA17_Chr1g0202541 54.815 135 49 2 1 123 1 135 6.49e-36 120
Msa0887950 MtrunA17_Chr6g0469651 55.224 134 49 2 1 124 1 133 1.39e-35 119
Msa0887950 MtrunA17_Chr6g0469541 57.944 107 43 2 1 107 1 105 1.40e-35 118
Msa0887950 MtrunA17_Chr1g0202561 51.799 139 50 3 1 123 1 138 4.38e-35 117
Msa0887950 MtrunA17_Chr1g0202581 54.074 135 46 3 1 123 1 131 8.38e-35 117
Msa0887950 MtrunA17_Chr7g0233181 53.774 106 47 1 1 106 1 104 1.19e-34 115
Msa0887950 MtrunA17_Chr6g0469671 75.714 70 17 0 1 70 1 70 1.83e-33 112
Msa0887950 MtrunA17_Chr8g0387471 48.855 131 56 3 1 124 1 127 5.40e-33 112
Msa0887950 MtrunA17_Chr1g0202501 47.015 134 57 2 1 124 1 130 1.50e-31 108
Msa0887950 MtrunA17_Chr1g0204291 51.111 135 50 4 1 123 1 131 1.73e-31 108
Msa0887950 MtrunA17_Chr7g0248671 61.765 68 26 0 1 68 1 68 3.18e-24 91.3
Msa0887950 MtrunA17_Chr8g0348361 66.176 68 23 0 1 68 1 68 4.82e-15 67.0
Msa0887950 MtrunA17_Chr3g0120541 43.210 81 42 4 3 79 5 85 7.85e-14 63.2
Msa0887950 MtrunA17_Chr5g0404641 31.373 153 73 4 3 123 4 156 3.92e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0887950 AT1G01490.1 66.197 71 23 1 1 70 1 71 3.38e-25 94.4
Msa0887950 AT1G01490.2 66.197 71 23 1 1 70 1 71 3.38e-25 94.4
Msa0887950 AT1G01490.4 65.714 70 23 1 2 70 29 98 1.17e-24 93.6
Msa0887950 AT5G52740.1 57.143 70 28 1 1 70 1 68 5.48e-19 76.6
Msa0887950 AT5G52760.1 43.269 104 49 4 5 105 7 103 7.37e-16 68.9
Msa0887950 AT5G52750.1 45.455 66 36 0 2 67 4 69 4.57e-13 62.0
Msa0887950 AT5G23760.1 50.725 69 33 1 3 70 4 72 9.58e-11 55.1

Find 33 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAACAATTCTGATTTAT+TGG 0.145112 6_1:+51499001 Msa0887950:five_prime_UTR
AAGACTGTCTCAGGCCTTTC+TGG 0.185291 6_1:+51499196 Msa0887950:CDS
AGGCTTCAAGTAATTGAATT+TGG 0.232989 6_1:-51500222 None:intergenic
GACAAGAAATTAACCATAAC+TGG 0.292446 6_1:+51500076 Msa0887950:CDS
ATTTGGTTCTTCTTCACATC+AGG 0.370347 6_1:-51500205 None:intergenic
TTATCTAAAAGTTTCGTTGA+AGG 0.386122 6_1:+51500461 Msa0887950:three_prime_UTR
TAAAAGAAGAGCTAGGGTAT+TGG 0.399065 6_1:-51498972 None:intergenic
ATATTCCTGTGTTTCAAGAA+TGG 0.407778 6_1:+51500285 Msa0887950:CDS
TAAAATTTAAAAGAAGAGCT+AGG 0.408169 6_1:-51498979 None:intergenic
TGGATCTGTGTCTCCAGTTA+TGG 0.434180 6_1:-51500089 None:intergenic
GTTGTTGCATATGATAATAA+TGG 0.434976 6_1:-51500249 None:intergenic
TTGTTGCATATGATAATAAT+GGG 0.437799 6_1:-51500248 None:intergenic
AGTTTACTTACTACATGTAC+TGG 0.438622 6_1:-51500109 None:intergenic
AAAAGCTTTATTGAAAATGA+TGG 0.441720 6_1:+51499030 Msa0887950:exon
GTAACAGAAACTAGTATTGA+AGG 0.449634 6_1:+51499135 Msa0887950:intron
TAGTAAGTAAACTAAGGAAA+TGG 0.475788 6_1:+51500119 Msa0887950:CDS
ATGCTGAAATAGTTTCTGTT+GGG 0.476513 6_1:+51500146 Msa0887950:CDS
AAAATTTAAAAGAAGAGCTA+GGG 0.497403 6_1:-51498978 None:intergenic
AAAGCTATGAAGACTGTCTC+AGG 0.497682 6_1:+51499187 Msa0887950:CDS
CATGCTGAAATAGTTTCTGT+TGG 0.500770 6_1:+51500145 Msa0887950:CDS
CAGCATATGATACATCCAAC+AGG 0.515213 6_1:-51500316 None:intergenic
TACATGTAGTAAGTAAACTA+AGG 0.515410 6_1:+51500113 Msa0887950:CDS
AACATGTTGGAATAAAGAAA+AGG 0.518784 6_1:+51500392 Msa0887950:three_prime_UTR
TTGTTCCATTCTTGAAACAC+AGG 0.547137 6_1:-51500290 None:intergenic
CAGGAATATTGAATATATTG+TGG 0.566124 6_1:-51500271 None:intergenic
TGTTCAATTGTGCAAACAGA+GGG 0.585753 6_1:+51500429 Msa0887950:three_prime_UTR
CATATGATAATAATGGGGAT+AGG 0.585962 6_1:-51500242 None:intergenic
ACAAGTTGACATTACCAGAA+AGG 0.591138 6_1:-51499210 None:intergenic
ATCATGAGCTTGTAACATGT+TGG 0.601712 6_1:+51500379 Msa0887950:three_prime_UTR
AGAATGGAACAAGATCCTGT+TGG 0.628668 6_1:+51500301 Msa0887950:CDS
ACAGAAACTAGTATTGAAGG+TGG 0.653422 6_1:+51499138 Msa0887950:intron
GTGTTCAATTGTGCAAACAG+AGG 0.663444 6_1:+51500428 Msa0887950:three_prime_UTR
TGTTGCATATGATAATAATG+GGG 0.697616 6_1:-51500247 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGAAATAATTAAGTAT+TGG + chr6_1:51499537-51499556 Msa0887950:intron 10.0%
!!! TTTTTGAAATAATTAAGTAT+TGG + chr6_1:51499537-51499556 Msa0887950:intron 10.0%
!!! AAAAAATTGATAGTAAAAGA+GGG - chr6_1:51499079-51499098 None:intergenic 15.0%
!! TTTGAACGAATAATATATTA+AGG + chr6_1:51499671-51499690 Msa0887950:intron 15.0%
!! CCTTGATATATTTAATATAT+GGG - chr6_1:51499872-51499891 None:intergenic 15.0%
!! TAATAATATGTTTGTATACA+CGG + chr6_1:51499905-51499924 Msa0887950:intron 15.0%
!!! TTATTTTGCTAAAATTGTAT+TGG + chr6_1:51500010-51500029 Msa0887950:intron 15.0%
!!! AAAAAATTGATAGTAAAAGA+GGG - chr6_1:51499079-51499098 None:intergenic 15.0%
!! TTTGAACGAATAATATATTA+AGG + chr6_1:51499671-51499690 Msa0887950:intron 15.0%
!! CCTTGATATATTTAATATAT+GGG - chr6_1:51499872-51499891 None:intergenic 15.0%
!! TAATAATATGTTTGTATACA+CGG + chr6_1:51499905-51499924 Msa0887950:intron 15.0%
!!! TTATTTTGCTAAAATTGTAT+TGG + chr6_1:51500010-51500029 Msa0887950:intron 15.0%
!! AAAATTTAAAAGAAGAGCTA+GGG - chr6_1:51498981-51499000 None:intergenic 20.0%
!! TAAAATTTAAAAGAAGAGCT+AGG - chr6_1:51498982-51499001 None:intergenic 20.0%
!! AAACAACAATTCTGATTTAT+TGG + chr6_1:51499001-51499020 Msa0887950:five_prime_UTR 20.0%
!!! AAAAGCTTTATTGAAAATGA+TGG + chr6_1:51499030-51499049 Msa0887950:exon 20.0%
!!! GAAAAAATTGATAGTAAAAG+AGG - chr6_1:51499080-51499099 None:intergenic 20.0%
!!! ATGATATTCAAATTCTTTTG+AGG - chr6_1:51499426-51499445 None:intergenic 20.0%
!! CGGAAACATTTAATATATTA+AGG + chr6_1:51499642-51499661 Msa0887950:intron 20.0%
!! TAGTTAAACATACCATAAAA+GGG + chr6_1:51499716-51499735 Msa0887950:intron 20.0%
!!! TCAAAAATAGTTTCCTTTTA+CGG - chr6_1:51499750-51499769 None:intergenic 20.0%
!! CCCATATATTAAATATATCA+AGG + chr6_1:51499869-51499888 Msa0887950:intron 20.0%
!! GCCTTGATATATTTAATATA+TGG - chr6_1:51499873-51499892 None:intergenic 20.0%
!!! TGTATTGGTATATTATTTAC+AGG + chr6_1:51500025-51500044 Msa0887950:intron 20.0%
!!! GTATTGGTATATTATTTACA+GGG + chr6_1:51500026-51500045 Msa0887950:intron 20.0%
!! TATTGGTATATTATTTACAG+GGG + chr6_1:51500027-51500046 Msa0887950:intron 20.0%
!! TTGTTGCATATGATAATAAT+GGG - chr6_1:51500251-51500270 None:intergenic 20.0%
!! AAAATTTAAAAGAAGAGCTA+GGG - chr6_1:51498981-51499000 None:intergenic 20.0%
!! TAAAATTTAAAAGAAGAGCT+AGG - chr6_1:51498982-51499001 None:intergenic 20.0%
!! AAACAACAATTCTGATTTAT+TGG + chr6_1:51499001-51499020 Msa0887950:five_prime_UTR 20.0%
!!! AAAAGCTTTATTGAAAATGA+TGG + chr6_1:51499030-51499049 Msa0887950:exon 20.0%
!!! GAAAAAATTGATAGTAAAAG+AGG - chr6_1:51499080-51499099 None:intergenic 20.0%
!!! ATGATATTCAAATTCTTTTG+AGG - chr6_1:51499426-51499445 None:intergenic 20.0%
!! CGGAAACATTTAATATATTA+AGG + chr6_1:51499642-51499661 Msa0887950:intron 20.0%
!! TAGTTAAACATACCATAAAA+GGG + chr6_1:51499716-51499735 Msa0887950:intron 20.0%
!!! TCAAAAATAGTTTCCTTTTA+CGG - chr6_1:51499750-51499769 None:intergenic 20.0%
!! CCCATATATTAAATATATCA+AGG + chr6_1:51499869-51499888 Msa0887950:intron 20.0%
!! GCCTTGATATATTTAATATA+TGG - chr6_1:51499873-51499892 None:intergenic 20.0%
!!! TGTATTGGTATATTATTTAC+AGG + chr6_1:51500025-51500044 Msa0887950:intron 20.0%
!!! GTATTGGTATATTATTTACA+GGG + chr6_1:51500026-51500045 Msa0887950:intron 20.0%
!! TATTGGTATATTATTTACAG+GGG + chr6_1:51500027-51500046 Msa0887950:intron 20.0%
!! TTGTTGCATATGATAATAAT+GGG - chr6_1:51500251-51500270 None:intergenic 20.0%
!! ACTTGTCTAGTTTCAATATT+TGG + chr6_1:51499227-51499246 Msa0887950:intron 25.0%
! CTAGTTAAACATACCATAAA+AGG + chr6_1:51499715-51499734 Msa0887950:intron 25.0%
! TACATGTAGTAAGTAAACTA+AGG + chr6_1:51500113-51500132 Msa0887950:CDS 25.0%
! TAGTAAGTAAACTAAGGAAA+TGG + chr6_1:51500119-51500138 Msa0887950:CDS 25.0%
! TGTTGCATATGATAATAATG+GGG - chr6_1:51500250-51500269 None:intergenic 25.0%
! GTTGTTGCATATGATAATAA+TGG - chr6_1:51500252-51500271 None:intergenic 25.0%
! CAGGAATATTGAATATATTG+TGG - chr6_1:51500274-51500293 None:intergenic 25.0%
! AACATGTTGGAATAAAGAAA+AGG + chr6_1:51500392-51500411 Msa0887950:three_prime_UTR 25.0%
! TTATCTAAAAGTTTCGTTGA+AGG + chr6_1:51500461-51500480 Msa0887950:three_prime_UTR 25.0%
!! ACTTGTCTAGTTTCAATATT+TGG + chr6_1:51499227-51499246 Msa0887950:intron 25.0%
! CTAGTTAAACATACCATAAA+AGG + chr6_1:51499715-51499734 Msa0887950:intron 25.0%
! TACATGTAGTAAGTAAACTA+AGG + chr6_1:51500113-51500132 Msa0887950:CDS 25.0%
! TAGTAAGTAAACTAAGGAAA+TGG + chr6_1:51500119-51500138 Msa0887950:CDS 25.0%
! TGTTGCATATGATAATAATG+GGG - chr6_1:51500250-51500269 None:intergenic 25.0%
! GTTGTTGCATATGATAATAA+TGG - chr6_1:51500252-51500271 None:intergenic 25.0%
! CAGGAATATTGAATATATTG+TGG - chr6_1:51500274-51500293 None:intergenic 25.0%
! AACATGTTGGAATAAAGAAA+AGG + chr6_1:51500392-51500411 Msa0887950:three_prime_UTR 25.0%
! TTATCTAAAAGTTTCGTTGA+AGG + chr6_1:51500461-51500480 Msa0887950:three_prime_UTR 25.0%
! GTAACAGAAACTAGTATTGA+AGG + chr6_1:51499135-51499154 Msa0887950:intron 30.0%
!! ATCGTTTTTCACTGTTTATG+AGG + chr6_1:51499379-51499398 Msa0887950:intron 30.0%
!!! CAAATTCTTTTGAGGTTACT+AGG - chr6_1:51499418-51499437 None:intergenic 30.0%
! ACGGTAATAATTCCCTTTTA+TGG - chr6_1:51499731-51499750 None:intergenic 30.0%
AAGGGAATTATTACCGTAAA+AGG + chr6_1:51499734-51499753 Msa0887950:intron 30.0%
AATATATGGGAAATGCTAAC+CGG - chr6_1:51499859-51499878 None:intergenic 30.0%
GACAAGAAATTAACCATAAC+TGG + chr6_1:51500076-51500095 Msa0887950:CDS 30.0%
AGTTTACTTACTACATGTAC+TGG - chr6_1:51500112-51500131 None:intergenic 30.0%
ATGCTGAAATAGTTTCTGTT+GGG + chr6_1:51500146-51500165 Msa0887950:CDS 30.0%
! TTCTTCTTTTCATCTTTTGC+AGG - chr6_1:51500172-51500191 None:intergenic 30.0%
AGGCTTCAAGTAATTGAATT+TGG - chr6_1:51500225-51500244 None:intergenic 30.0%
! CATATGATAATAATGGGGAT+AGG - chr6_1:51500245-51500264 None:intergenic 30.0%
ATATTCCTGTGTTTCAAGAA+TGG + chr6_1:51500285-51500304 Msa0887950:CDS 30.0%
! GTAACAGAAACTAGTATTGA+AGG + chr6_1:51499135-51499154 Msa0887950:intron 30.0%
!! ATCGTTTTTCACTGTTTATG+AGG + chr6_1:51499379-51499398 Msa0887950:intron 30.0%
!!! CAAATTCTTTTGAGGTTACT+AGG - chr6_1:51499418-51499437 None:intergenic 30.0%
! ACGGTAATAATTCCCTTTTA+TGG - chr6_1:51499731-51499750 None:intergenic 30.0%
AAGGGAATTATTACCGTAAA+AGG + chr6_1:51499734-51499753 Msa0887950:intron 30.0%
AATATATGGGAAATGCTAAC+CGG - chr6_1:51499859-51499878 None:intergenic 30.0%
GACAAGAAATTAACCATAAC+TGG + chr6_1:51500076-51500095 Msa0887950:CDS 30.0%
AGTTTACTTACTACATGTAC+TGG - chr6_1:51500112-51500131 None:intergenic 30.0%
ATGCTGAAATAGTTTCTGTT+GGG + chr6_1:51500146-51500165 Msa0887950:CDS 30.0%
! TTCTTCTTTTCATCTTTTGC+AGG - chr6_1:51500172-51500191 None:intergenic 30.0%
AGGCTTCAAGTAATTGAATT+TGG - chr6_1:51500225-51500244 None:intergenic 30.0%
! CATATGATAATAATGGGGAT+AGG - chr6_1:51500245-51500264 None:intergenic 30.0%
ATATTCCTGTGTTTCAAGAA+TGG + chr6_1:51500285-51500304 Msa0887950:CDS 30.0%
TAAAAGAAGAGCTAGGGTAT+TGG - chr6_1:51498975-51498994 None:intergenic 35.0%
AGTAAAAGAGGGAATTCACA+AGG - chr6_1:51499068-51499087 None:intergenic 35.0%
! ACAGAAACTAGTATTGAAGG+TGG + chr6_1:51499138-51499157 Msa0887950:intron 35.0%
! AGTCTTCATAGCTTTTTGCT+TGG - chr6_1:51499182-51499201 None:intergenic 35.0%
! ACAAGTTGACATTACCAGAA+AGG - chr6_1:51499213-51499232 None:intergenic 35.0%
! GTTTTTCACTGTTTATGAGG+TGG + chr6_1:51499382-51499401 Msa0887950:intron 35.0%
ACTCAAGTGGTAAAAGATTG+CGG + chr6_1:51499622-51499641 Msa0887950:intron 35.0%
CATGCTGAAATAGTTTCTGT+TGG + chr6_1:51500145-51500164 Msa0887950:CDS 35.0%
!! ATTTGGTTCTTCTTCACATC+AGG - chr6_1:51500208-51500227 None:intergenic 35.0%
TTGTTCCATTCTTGAAACAC+AGG - chr6_1:51500293-51500312 None:intergenic 35.0%
ATCATGAGCTTGTAACATGT+TGG + chr6_1:51500379-51500398 Msa0887950:three_prime_UTR 35.0%
TGTTCAATTGTGCAAACAGA+GGG + chr6_1:51500429-51500448 Msa0887950:three_prime_UTR 35.0%
TAAAAGAAGAGCTAGGGTAT+TGG - chr6_1:51498975-51498994 None:intergenic 35.0%
AGTAAAAGAGGGAATTCACA+AGG - chr6_1:51499068-51499087 None:intergenic 35.0%
! ACAGAAACTAGTATTGAAGG+TGG + chr6_1:51499138-51499157 Msa0887950:intron 35.0%
! AGTCTTCATAGCTTTTTGCT+TGG - chr6_1:51499182-51499201 None:intergenic 35.0%
! ACAAGTTGACATTACCAGAA+AGG - chr6_1:51499213-51499232 None:intergenic 35.0%
! GTTTTTCACTGTTTATGAGG+TGG + chr6_1:51499382-51499401 Msa0887950:intron 35.0%
ACTCAAGTGGTAAAAGATTG+CGG + chr6_1:51499622-51499641 Msa0887950:intron 35.0%
CATGCTGAAATAGTTTCTGT+TGG + chr6_1:51500145-51500164 Msa0887950:CDS 35.0%
!! ATTTGGTTCTTCTTCACATC+AGG - chr6_1:51500208-51500227 None:intergenic 35.0%
TTGTTCCATTCTTGAAACAC+AGG - chr6_1:51500293-51500312 None:intergenic 35.0%
ATCATGAGCTTGTAACATGT+TGG + chr6_1:51500379-51500398 Msa0887950:three_prime_UTR 35.0%
TGTTCAATTGTGCAAACAGA+GGG + chr6_1:51500429-51500448 Msa0887950:three_prime_UTR 35.0%
AAAGCTATGAAGACTGTCTC+AGG + chr6_1:51499187-51499206 Msa0887950:CDS 40.0%
CGACATAAGTGTAACTCAAG+TGG + chr6_1:51499609-51499628 Msa0887950:intron 40.0%
TTAAGGTCTAATTGTGCCCT+CGG + chr6_1:51499688-51499707 Msa0887950:intron 40.0%
AGAATGGAACAAGATCCTGT+TGG + chr6_1:51500301-51500320 Msa0887950:CDS 40.0%
CAGCATATGATACATCCAAC+AGG - chr6_1:51500319-51500338 None:intergenic 40.0%
GTGTTCAATTGTGCAAACAG+AGG + chr6_1:51500428-51500447 Msa0887950:three_prime_UTR 40.0%
AAAGCTATGAAGACTGTCTC+AGG + chr6_1:51499187-51499206 Msa0887950:CDS 40.0%
CGACATAAGTGTAACTCAAG+TGG + chr6_1:51499609-51499628 Msa0887950:intron 40.0%
TTAAGGTCTAATTGTGCCCT+CGG + chr6_1:51499688-51499707 Msa0887950:intron 40.0%
AGAATGGAACAAGATCCTGT+TGG + chr6_1:51500301-51500320 Msa0887950:CDS 40.0%
CAGCATATGATACATCCAAC+AGG - chr6_1:51500319-51500338 None:intergenic 40.0%
GTGTTCAATTGTGCAAACAG+AGG + chr6_1:51500428-51500447 Msa0887950:three_prime_UTR 40.0%
TAAGGTCTAATTGTGCCCTC+GGG + chr6_1:51499689-51499708 Msa0887950:intron 45.0%
ATGTTTAACTAGTGCCCCGA+GGG - chr6_1:51499707-51499726 None:intergenic 45.0%
TATGTTTAACTAGTGCCCCG+AGG - chr6_1:51499708-51499727 None:intergenic 45.0%
TATATCCTTAACCAGTGCCC+CGG + chr6_1:51499829-51499848 Msa0887950:intron 45.0%
TGGATCTGTGTCTCCAGTTA+TGG - chr6_1:51500092-51500111 None:intergenic 45.0%
TAAGGTCTAATTGTGCCCTC+GGG + chr6_1:51499689-51499708 Msa0887950:intron 45.0%
ATGTTTAACTAGTGCCCCGA+GGG - chr6_1:51499707-51499726 None:intergenic 45.0%
TATGTTTAACTAGTGCCCCG+AGG - chr6_1:51499708-51499727 None:intergenic 45.0%
TATATCCTTAACCAGTGCCC+CGG + chr6_1:51499829-51499848 Msa0887950:intron 45.0%
TGGATCTGTGTCTCCAGTTA+TGG - chr6_1:51500092-51500111 None:intergenic 45.0%
!!! TATTTATTTTAATTGAAAAA+TGG - chr6_1:51499475-51499494 None:intergenic 5.0%
!!! TATTTATTTTAATTGAAAAA+TGG - chr6_1:51499475-51499494 None:intergenic 5.0%
AAGACTGTCTCAGGCCTTTC+TGG + chr6_1:51499196-51499215 Msa0887950:CDS 50.0%
AAGGTCTAATTGTGCCCTCG+GGG + chr6_1:51499690-51499709 Msa0887950:intron 50.0%
ATATCCTTAACCAGTGCCCC+GGG + chr6_1:51499830-51499849 Msa0887950:intron 50.0%
AAGACTGTCTCAGGCCTTTC+TGG + chr6_1:51499196-51499215 Msa0887950:CDS 50.0%
AAGGTCTAATTGTGCCCTCG+GGG + chr6_1:51499690-51499709 Msa0887950:intron 50.0%
ATATCCTTAACCAGTGCCCC+GGG + chr6_1:51499830-51499849 Msa0887950:intron 50.0%
AAATGCTAACCGGTGTCCCG+GGG - chr6_1:51499849-51499868 None:intergenic 55.0%
GAAATGCTAACCGGTGTCCC+GGG - chr6_1:51499850-51499869 None:intergenic 55.0%
GGAAATGCTAACCGGTGTCC+CGG - chr6_1:51499851-51499870 None:intergenic 55.0%
AAATGCTAACCGGTGTCCCG+GGG - chr6_1:51499849-51499868 None:intergenic 55.0%
GAAATGCTAACCGGTGTCCC+GGG - chr6_1:51499850-51499869 None:intergenic 55.0%
GGAAATGCTAACCGGTGTCC+CGG - chr6_1:51499851-51499870 None:intergenic 55.0%
!! GTGTCCCGGGGCACTGGTTA+AGG - chr6_1:51499837-51499856 None:intergenic 65.0%
TAACCAGTGCCCCGGGACAC+CGG + chr6_1:51499837-51499856 Msa0887950:intron 65.0%
!! GTGTCCCGGGGCACTGGTTA+AGG - chr6_1:51499837-51499856 None:intergenic 65.0%
TAACCAGTGCCCCGGGACAC+CGG + chr6_1:51499837-51499856 Msa0887950:intron 65.0%
TAACCGGTGTCCCGGGGCAC+TGG - chr6_1:51499843-51499862 None:intergenic 70.0%
TAACCGGTGTCCCGGGGCAC+TGG - chr6_1:51499843-51499862 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 51498916 51500484 51498916 ID=Msa0887950;Name=Msa0887950
chr6_1 mRNA 51498916 51500484 51498916 ID=Msa0887950-mRNA-1;Parent=Msa0887950;Name=Msa0887950-mRNA-1;_AED=0.12;_eAED=0.12;_QI=130|1|1|1|1|1|3|145|124
chr6_1 exon 51498916 51499051 51498916 ID=Msa0887950-mRNA-1:exon:10431;Parent=Msa0887950-mRNA-1
chr6_1 exon 51499142 51499217 51499142 ID=Msa0887950-mRNA-1:exon:10432;Parent=Msa0887950-mRNA-1
chr6_1 exon 51500047 51500484 51500047 ID=Msa0887950-mRNA-1:exon:10433;Parent=Msa0887950-mRNA-1
chr6_1 five_prime_UTR 51498916 51499045 51498916 ID=Msa0887950-mRNA-1:five_prime_utr;Parent=Msa0887950-mRNA-1
chr6_1 CDS 51499046 51499051 51499046 ID=Msa0887950-mRNA-1:cds;Parent=Msa0887950-mRNA-1
chr6_1 CDS 51499142 51499217 51499142 ID=Msa0887950-mRNA-1:cds;Parent=Msa0887950-mRNA-1
chr6_1 CDS 51500047 51500339 51500047 ID=Msa0887950-mRNA-1:cds;Parent=Msa0887950-mRNA-1
chr6_1 three_prime_UTR 51500340 51500484 51500340 ID=Msa0887950-mRNA-1:three_prime_utr;Parent=Msa0887950-mRNA-1
Gene Sequence

>Msa0887950

ATGATGAAACTAGTATTGAAGGTGGATTTACATGATGACAGAACCAAGCAAAAAGCTATGAAGACTGTCTCAGGCCTTTCTGGGGTAGAGTCAGTTTCTGTAGACATGAAAGACAAGAAATTAACCATAACTGGAGACACAGATCCAGTACATGTAGTAAGTAAACTAAGGAAATGGTGTCATGCTGAAATAGTTTCTGTTGGGCCTGCAAAAGATGAAAAGAAGAAAGAAGAATCTAAGCCTGATGTGAAGAAGAACCAAATTCAATTACTTGAAGCCTATCCCCATTATTATCATATGCAACAACCACAATATATTCAATATTCCTGTGTTTCAAGAATGGAACAAGATCCTGTTGGATGTATCATATGCTGA
Protein sequence

>Msa0887950

MMKLVLKVDLHDDRTKQKAMKTVSGLSGVESVSVDMKDKKLTITGDTDPVHVVSKLRKWCHAEIVSVGPAKDEKKKEESKPDVKKNQIQLLEAYPHYYHMQQPQYIQYSCVSRMEQDPVGCIIC*