Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887960 | XP_039690934.1 | 93.548 | 124 | 8 | 0 | 1 | 124 | 1 | 124 | 7.86e-70 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887960 | sp|O03982|HIP39_ARATH | 66.197 | 71 | 23 | 1 | 1 | 70 | 1 | 71 | 3.32e-24 | 94.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887960 | I3SS97 | 93.548 | 124 | 8 | 0 | 1 | 124 | 1 | 124 | 3.75e-70 | 215 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0085290 | Msa0887960 | 0.805782 | 1.130364e-49 | -8.615850e-47 |
| Msa0100090 | Msa0887960 | 0.801759 | 7.736585e-49 | -8.615850e-47 |
| Msa0623080 | Msa0887960 | 0.804026 | 2.631807e-49 | -8.615850e-47 |
| Msa0825870 | Msa0887960 | 0.802863 | 4.584413e-49 | -8.615850e-47 |
| Msa0836850 | Msa0887960 | 0.809216 | 2.111627e-50 | -8.615850e-47 |
| Msa0197660 | Msa0887960 | 0.813163 | 2.942002e-51 | -8.615850e-47 |
| Msa0239800 | Msa0887960 | 0.803199 | 3.906452e-49 | -8.615850e-47 |
| Msa0269810 | Msa0887960 | 0.863441 | 2.483308e-64 | -8.615850e-47 |
| Msa0317510 | Msa0887960 | 0.809153 | 2.178362e-50 | -8.615850e-47 |
| Msa0599150 | Msa0887960 | 0.811266 | 7.630088e-51 | -8.615850e-47 |
| Msa0865330 | Msa0887960 | 0.822144 | 2.771590e-53 | -8.615850e-47 |
| Msa0887950 | Msa0887960 | 0.946761 | 2.489034e-105 | -8.615850e-47 |
| Msa0887960 | Msa0914260 | 0.839939 | 1.173407e-57 | -8.615850e-47 |
| Msa0887960 | Msa0914290 | 0.872181 | 3.873055e-67 | -8.615850e-47 |
| Msa0887960 | Msa0926890 | 0.821782 | 3.362632e-53 | -8.615850e-47 |
| Msa0887960 | Msa0952340 | 0.809490 | 1.843978e-50 | -8.615850e-47 |
| Msa0887960 | Msa0952360 | 0.867366 | 1.442586e-65 | -8.615850e-47 |
| Msa0887960 | Msa0964130 | 0.852759 | 3.738112e-61 | -8.615850e-47 |
| Msa0887960 | Msa0973600 | 0.834155 | 3.529120e-56 | -8.615850e-47 |
| Msa0887960 | Msa1000250 | 0.804465 | 2.132466e-49 | -8.615850e-47 |
| Msa0887960 | Msa1127770 | 0.802988 | 4.320225e-49 | -8.615850e-47 |
| Msa0887960 | Msa1177330 | 0.840002 | 1.129991e-57 | -8.615850e-47 |
| Msa0887960 | Msa1236730 | 0.854027 | 1.618027e-61 | -8.615850e-47 |
| Msa0887960 | Msa1246700 | 0.827854 | 1.242828e-54 | -8.615850e-47 |
| Msa0887960 | Msa1280150 | 0.800014 | 1.757932e-48 | -8.615850e-47 |
| Msa0887960 | Msa1317130 | 0.853090 | 3.006184e-61 | -8.615850e-47 |
| Msa0887960 | Msa1344890 | 0.844695 | 6.447098e-59 | -8.615850e-47 |
| Msa0887960 | Msa1365270 | 0.835835 | 1.331417e-56 | -8.615850e-47 |
| Msa0887960 | Msa1376450 | 0.811527 | 6.697114e-51 | -8.615850e-47 |
| Msa0887960 | Msa1391550 | 0.805261 | 1.454122e-49 | -8.615850e-47 |
| Msa0887960 | Msa1424750 | 0.801607 | 8.315100e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887960 | MtrunA17_Chr6g0469571 | 93.548 | 124 | 8 | 0 | 1 | 124 | 1 | 124 | 7.23e-74 | 215 |
| Msa0887960 | MtrunA17_Chr6g0469551 | 91.935 | 124 | 10 | 0 | 1 | 124 | 1 | 124 | 2.82e-73 | 214 |
| Msa0887960 | MtrunA17_Chr6g0469591 | 91.935 | 124 | 10 | 0 | 1 | 124 | 1 | 124 | 2.14e-72 | 211 |
| Msa0887960 | MtrunA17_Chr6g0469681 | 58.915 | 129 | 46 | 3 | 1 | 124 | 1 | 127 | 2.60e-38 | 125 |
| Msa0887960 | MtrunA17_Chr7g0233231 | 55.556 | 108 | 46 | 1 | 1 | 108 | 1 | 106 | 6.94e-38 | 124 |
| Msa0887960 | MtrunA17_Chr7g0233251 | 57.944 | 107 | 43 | 1 | 1 | 107 | 1 | 105 | 5.26e-37 | 122 |
| Msa0887960 | MtrunA17_Chr7g0233211 | 55.140 | 107 | 46 | 1 | 1 | 107 | 1 | 105 | 9.27e-37 | 121 |
| Msa0887960 | MtrunA17_Chr7g0233191 | 56.075 | 107 | 45 | 1 | 1 | 107 | 1 | 105 | 2.02e-36 | 120 |
| Msa0887960 | MtrunA17_Chr7g0233201 | 56.075 | 107 | 45 | 1 | 1 | 107 | 1 | 105 | 4.06e-36 | 119 |
| Msa0887960 | MtrunA17_Chr1g0202541 | 54.815 | 135 | 49 | 2 | 1 | 123 | 1 | 135 | 6.49e-36 | 120 |
| Msa0887960 | MtrunA17_Chr6g0469651 | 55.224 | 134 | 49 | 2 | 1 | 124 | 1 | 133 | 1.39e-35 | 119 |
| Msa0887960 | MtrunA17_Chr6g0469541 | 57.944 | 107 | 43 | 2 | 1 | 107 | 1 | 105 | 1.40e-35 | 118 |
| Msa0887960 | MtrunA17_Chr1g0202561 | 51.799 | 139 | 50 | 3 | 1 | 123 | 1 | 138 | 4.38e-35 | 117 |
| Msa0887960 | MtrunA17_Chr1g0202581 | 54.074 | 135 | 46 | 3 | 1 | 123 | 1 | 131 | 8.38e-35 | 117 |
| Msa0887960 | MtrunA17_Chr7g0233181 | 53.774 | 106 | 47 | 1 | 1 | 106 | 1 | 104 | 1.19e-34 | 115 |
| Msa0887960 | MtrunA17_Chr6g0469671 | 75.714 | 70 | 17 | 0 | 1 | 70 | 1 | 70 | 1.83e-33 | 112 |
| Msa0887960 | MtrunA17_Chr8g0387471 | 48.855 | 131 | 56 | 3 | 1 | 124 | 1 | 127 | 5.40e-33 | 112 |
| Msa0887960 | MtrunA17_Chr1g0202501 | 47.015 | 134 | 57 | 2 | 1 | 124 | 1 | 130 | 1.50e-31 | 108 |
| Msa0887960 | MtrunA17_Chr1g0204291 | 51.111 | 135 | 50 | 4 | 1 | 123 | 1 | 131 | 1.73e-31 | 108 |
| Msa0887960 | MtrunA17_Chr7g0248671 | 61.765 | 68 | 26 | 0 | 1 | 68 | 1 | 68 | 3.18e-24 | 91.3 |
| Msa0887960 | MtrunA17_Chr8g0348361 | 66.176 | 68 | 23 | 0 | 1 | 68 | 1 | 68 | 4.82e-15 | 67.0 |
| Msa0887960 | MtrunA17_Chr3g0120541 | 43.210 | 81 | 42 | 4 | 3 | 79 | 5 | 85 | 7.85e-14 | 63.2 |
| Msa0887960 | MtrunA17_Chr5g0404641 | 31.373 | 153 | 73 | 4 | 3 | 123 | 4 | 156 | 3.92e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0887960 | AT1G01490.1 | 66.197 | 71 | 23 | 1 | 1 | 70 | 1 | 71 | 3.38e-25 | 94.4 |
| Msa0887960 | AT1G01490.2 | 66.197 | 71 | 23 | 1 | 1 | 70 | 1 | 71 | 3.38e-25 | 94.4 |
| Msa0887960 | AT1G01490.4 | 65.714 | 70 | 23 | 1 | 2 | 70 | 29 | 98 | 1.17e-24 | 93.6 |
| Msa0887960 | AT5G52740.1 | 57.143 | 70 | 28 | 1 | 1 | 70 | 1 | 68 | 5.48e-19 | 76.6 |
| Msa0887960 | AT5G52760.1 | 43.269 | 104 | 49 | 4 | 5 | 105 | 7 | 103 | 7.37e-16 | 68.9 |
| Msa0887960 | AT5G52750.1 | 45.455 | 66 | 36 | 0 | 2 | 67 | 4 | 69 | 4.57e-13 | 62.0 |
| Msa0887960 | AT5G23760.1 | 50.725 | 69 | 33 | 1 | 3 | 70 | 4 | 72 | 9.58e-11 | 55.1 |
Find 33 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGACTGTCTCAGGCCTTTC+TGG | 0.185291 | 6_1:+51520729 | Msa0887960:CDS |
| AGGCTTCAAGTAATTGAATT+TGG | 0.232989 | 6_1:-51521756 | None:intergenic |
| GACAAGAAATTAACCATAAC+TGG | 0.292446 | 6_1:+51521610 | Msa0887960:CDS |
| ATTTGGTTCTTCTTCACATC+AGG | 0.370347 | 6_1:-51521739 | None:intergenic |
| TTATCTAAAAGTTTCGTTGA+AGG | 0.386122 | 6_1:+51521995 | Msa0887960:three_prime_UTR |
| TAAAAGAAGAGCTAGGGTAT+TGG | 0.399065 | 6_1:-51520505 | None:intergenic |
| AACAGCTTTATTGAAAATGA+TGG | 0.405079 | 6_1:+51520563 | Msa0887960:exon |
| ATATTCCTGTGTTTCAAGAA+TGG | 0.407778 | 6_1:+51521819 | Msa0887960:CDS |
| TAAAATTTAAAAGAAGAGCT+AGG | 0.408169 | 6_1:-51520512 | None:intergenic |
| TGGATCTGTGTCTCCAGTTA+TGG | 0.434180 | 6_1:-51521623 | None:intergenic |
| GTTGTTGCATATGATAATAA+TGG | 0.434976 | 6_1:-51521783 | None:intergenic |
| TTGTTGCATATGATAATAAT+GGG | 0.437799 | 6_1:-51521782 | None:intergenic |
| AGTTTACTTACTACATGTAC+TGG | 0.438622 | 6_1:-51521643 | None:intergenic |
| GTAACAGAAACTAGTATTGA+AGG | 0.449634 | 6_1:+51520668 | Msa0887960:intron |
| TAGTAAGTAAACTAAGGAAA+TGG | 0.475788 | 6_1:+51521653 | Msa0887960:CDS |
| ATGCTGAAATAGTTTCTGTT+GGG | 0.476513 | 6_1:+51521680 | Msa0887960:CDS |
| TTTCAATAAAGCTGTTTGAA+AGG | 0.492882 | 6_1:-51520556 | None:intergenic |
| AAAATTTAAAAGAAGAGCTA+GGG | 0.497403 | 6_1:-51520511 | None:intergenic |
| AAAGCTATGAAGACTGTCTC+AGG | 0.497682 | 6_1:+51520720 | Msa0887960:CDS |
| CATGCTGAAATAGTTTCTGT+TGG | 0.500770 | 6_1:+51521679 | Msa0887960:CDS |
| CAGCATATGATACATCCAAC+AGG | 0.515213 | 6_1:-51521850 | None:intergenic |
| TACATGTAGTAAGTAAACTA+AGG | 0.515410 | 6_1:+51521647 | Msa0887960:CDS |
| AACATGTTGGAATAAAGAAA+AGG | 0.518784 | 6_1:+51521926 | Msa0887960:three_prime_UTR |
| TTGTTCCATTCTTGAAACAC+AGG | 0.547137 | 6_1:-51521824 | None:intergenic |
| CAAAGTTGACATTACCAGAA+AGG | 0.565266 | 6_1:-51520743 | None:intergenic |
| CAGGAATATTGAATATATTG+TGG | 0.566124 | 6_1:-51521805 | None:intergenic |
| TGTTCAATTGTGCAAACAGA+GGG | 0.585753 | 6_1:+51521963 | Msa0887960:three_prime_UTR |
| CATATGATAATAATGGGGAT+AGG | 0.585962 | 6_1:-51521776 | None:intergenic |
| ATCATGAGCTTGTAACATGT+TGG | 0.601712 | 6_1:+51521913 | Msa0887960:three_prime_UTR |
| AGAATGGAACAAGATCCTGT+TGG | 0.628668 | 6_1:+51521835 | Msa0887960:CDS |
| ACAGAAACTAGTATTGAAGG+TGG | 0.653422 | 6_1:+51520671 | Msa0887960:intron |
| GTGTTCAATTGTGCAAACAG+AGG | 0.663444 | 6_1:+51521962 | Msa0887960:three_prime_UTR |
| TGTTGCATATGATAATAATG+GGG | 0.697616 | 6_1:-51521781 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGAAATAATTAAGTAT+TGG | + | chr6_1:51521071-51521090 | Msa0887960:intron | 10.0% |
| !!! | TTTTTGAAATAATTAAGTAT+TGG | + | chr6_1:51521071-51521090 | Msa0887960:intron | 10.0% |
| !!! | AAAAAATTGATAGTAAAAGA+GGG | - | chr6_1:51520612-51520631 | None:intergenic | 15.0% |
| !! | TTTGAACGAATAATATATTA+AGG | + | chr6_1:51521205-51521224 | Msa0887960:intron | 15.0% |
| !! | CCTTGATATATTTAATATAT+GGG | - | chr6_1:51521406-51521425 | None:intergenic | 15.0% |
| !! | TAATAATATGTTTGTATACA+CGG | + | chr6_1:51521439-51521458 | Msa0887960:intron | 15.0% |
| !!! | TTATTTTGCTAAAATTGTAT+TGG | + | chr6_1:51521544-51521563 | Msa0887960:intron | 15.0% |
| !!! | AAAAAATTGATAGTAAAAGA+GGG | - | chr6_1:51520612-51520631 | None:intergenic | 15.0% |
| !! | TTTGAACGAATAATATATTA+AGG | + | chr6_1:51521205-51521224 | Msa0887960:intron | 15.0% |
| !! | CCTTGATATATTTAATATAT+GGG | - | chr6_1:51521406-51521425 | None:intergenic | 15.0% |
| !! | TAATAATATGTTTGTATACA+CGG | + | chr6_1:51521439-51521458 | Msa0887960:intron | 15.0% |
| !!! | TTATTTTGCTAAAATTGTAT+TGG | + | chr6_1:51521544-51521563 | Msa0887960:intron | 15.0% |
| !! | AAAATTTAAAAGAAGAGCTA+GGG | - | chr6_1:51520514-51520533 | None:intergenic | 20.0% |
| !! | TAAAATTTAAAAGAAGAGCT+AGG | - | chr6_1:51520515-51520534 | None:intergenic | 20.0% |
| !!! | GAAAAAATTGATAGTAAAAG+AGG | - | chr6_1:51520613-51520632 | None:intergenic | 20.0% |
| !!! | ATGATATTCAAATTCTTTTG+AGG | - | chr6_1:51520960-51520979 | None:intergenic | 20.0% |
| !! | CGGAAACATTTAATATATTA+AGG | + | chr6_1:51521176-51521195 | Msa0887960:intron | 20.0% |
| !! | TAGTTAAACATACCATAAAA+GGG | + | chr6_1:51521250-51521269 | Msa0887960:intron | 20.0% |
| !!! | TCAAAAATAGTTTCCTTTTA+CGG | - | chr6_1:51521284-51521303 | None:intergenic | 20.0% |
| !! | CCCATATATTAAATATATCA+AGG | + | chr6_1:51521403-51521422 | Msa0887960:intron | 20.0% |
| !! | GCCTTGATATATTTAATATA+TGG | - | chr6_1:51521407-51521426 | None:intergenic | 20.0% |
| !!! | TGTATTGGTATATTATTTAC+AGG | + | chr6_1:51521559-51521578 | Msa0887960:intron | 20.0% |
| !!! | GTATTGGTATATTATTTACA+GGG | + | chr6_1:51521560-51521579 | Msa0887960:intron | 20.0% |
| !! | TATTGGTATATTATTTACAG+GGG | + | chr6_1:51521561-51521580 | Msa0887960:intron | 20.0% |
| !! | TTGTTGCATATGATAATAAT+GGG | - | chr6_1:51521785-51521804 | None:intergenic | 20.0% |
| !! | AAAATTTAAAAGAAGAGCTA+GGG | - | chr6_1:51520514-51520533 | None:intergenic | 20.0% |
| !! | TAAAATTTAAAAGAAGAGCT+AGG | - | chr6_1:51520515-51520534 | None:intergenic | 20.0% |
| !!! | GAAAAAATTGATAGTAAAAG+AGG | - | chr6_1:51520613-51520632 | None:intergenic | 20.0% |
| !!! | ATGATATTCAAATTCTTTTG+AGG | - | chr6_1:51520960-51520979 | None:intergenic | 20.0% |
| !! | CGGAAACATTTAATATATTA+AGG | + | chr6_1:51521176-51521195 | Msa0887960:intron | 20.0% |
| !! | TAGTTAAACATACCATAAAA+GGG | + | chr6_1:51521250-51521269 | Msa0887960:intron | 20.0% |
| !!! | TCAAAAATAGTTTCCTTTTA+CGG | - | chr6_1:51521284-51521303 | None:intergenic | 20.0% |
| !! | CCCATATATTAAATATATCA+AGG | + | chr6_1:51521403-51521422 | Msa0887960:intron | 20.0% |
| !! | GCCTTGATATATTTAATATA+TGG | - | chr6_1:51521407-51521426 | None:intergenic | 20.0% |
| !!! | TGTATTGGTATATTATTTAC+AGG | + | chr6_1:51521559-51521578 | Msa0887960:intron | 20.0% |
| !!! | GTATTGGTATATTATTTACA+GGG | + | chr6_1:51521560-51521579 | Msa0887960:intron | 20.0% |
| !! | TATTGGTATATTATTTACAG+GGG | + | chr6_1:51521561-51521580 | Msa0887960:intron | 20.0% |
| !! | TTGTTGCATATGATAATAAT+GGG | - | chr6_1:51521785-51521804 | None:intergenic | 20.0% |
| ! | TTTCAATAAAGCTGTTTGAA+AGG | - | chr6_1:51520559-51520578 | None:intergenic | 25.0% |
| !!! | AACAGCTTTATTGAAAATGA+TGG | + | chr6_1:51520563-51520582 | Msa0887960:exon | 25.0% |
| !! | CTTTGTCTAGTTTCAATATT+TGG | + | chr6_1:51520761-51520780 | Msa0887960:intron | 25.0% |
| ! | CTAGTTAAACATACCATAAA+AGG | + | chr6_1:51521249-51521268 | Msa0887960:intron | 25.0% |
| ! | TACATGTAGTAAGTAAACTA+AGG | + | chr6_1:51521647-51521666 | Msa0887960:CDS | 25.0% |
| ! | TAGTAAGTAAACTAAGGAAA+TGG | + | chr6_1:51521653-51521672 | Msa0887960:CDS | 25.0% |
| ! | TGTTGCATATGATAATAATG+GGG | - | chr6_1:51521784-51521803 | None:intergenic | 25.0% |
| ! | GTTGTTGCATATGATAATAA+TGG | - | chr6_1:51521786-51521805 | None:intergenic | 25.0% |
| ! | CAGGAATATTGAATATATTG+TGG | - | chr6_1:51521808-51521827 | None:intergenic | 25.0% |
| ! | AACATGTTGGAATAAAGAAA+AGG | + | chr6_1:51521926-51521945 | Msa0887960:three_prime_UTR | 25.0% |
| ! | TTATCTAAAAGTTTCGTTGA+AGG | + | chr6_1:51521995-51522014 | Msa0887960:three_prime_UTR | 25.0% |
| ! | TTTCAATAAAGCTGTTTGAA+AGG | - | chr6_1:51520559-51520578 | None:intergenic | 25.0% |
| !!! | AACAGCTTTATTGAAAATGA+TGG | + | chr6_1:51520563-51520582 | Msa0887960:exon | 25.0% |
| !! | CTTTGTCTAGTTTCAATATT+TGG | + | chr6_1:51520761-51520780 | Msa0887960:intron | 25.0% |
| ! | CTAGTTAAACATACCATAAA+AGG | + | chr6_1:51521249-51521268 | Msa0887960:intron | 25.0% |
| ! | TACATGTAGTAAGTAAACTA+AGG | + | chr6_1:51521647-51521666 | Msa0887960:CDS | 25.0% |
| ! | TAGTAAGTAAACTAAGGAAA+TGG | + | chr6_1:51521653-51521672 | Msa0887960:CDS | 25.0% |
| ! | TGTTGCATATGATAATAATG+GGG | - | chr6_1:51521784-51521803 | None:intergenic | 25.0% |
| ! | GTTGTTGCATATGATAATAA+TGG | - | chr6_1:51521786-51521805 | None:intergenic | 25.0% |
| ! | CAGGAATATTGAATATATTG+TGG | - | chr6_1:51521808-51521827 | None:intergenic | 25.0% |
| ! | AACATGTTGGAATAAAGAAA+AGG | + | chr6_1:51521926-51521945 | Msa0887960:three_prime_UTR | 25.0% |
| ! | TTATCTAAAAGTTTCGTTGA+AGG | + | chr6_1:51521995-51522014 | Msa0887960:three_prime_UTR | 25.0% |
| ! | GTAACAGAAACTAGTATTGA+AGG | + | chr6_1:51520668-51520687 | Msa0887960:intron | 30.0% |
| !! | ATCGTTTTTCACTGTTTATG+AGG | + | chr6_1:51520913-51520932 | Msa0887960:intron | 30.0% |
| !!! | CAAATTCTTTTGAGGTTACT+AGG | - | chr6_1:51520952-51520971 | None:intergenic | 30.0% |
| ! | ACGGTAATAATTCCCTTTTA+TGG | - | chr6_1:51521265-51521284 | None:intergenic | 30.0% |
| AAGGGAATTATTACCGTAAA+AGG | + | chr6_1:51521268-51521287 | Msa0887960:intron | 30.0% | |
| AATATATGGGAAATGCTAAC+CGG | - | chr6_1:51521393-51521412 | None:intergenic | 30.0% | |
| GACAAGAAATTAACCATAAC+TGG | + | chr6_1:51521610-51521629 | Msa0887960:CDS | 30.0% | |
| AGTTTACTTACTACATGTAC+TGG | - | chr6_1:51521646-51521665 | None:intergenic | 30.0% | |
| ATGCTGAAATAGTTTCTGTT+GGG | + | chr6_1:51521680-51521699 | Msa0887960:CDS | 30.0% | |
| ! | TTCTTCTTTTCATCTTTTGC+AGG | - | chr6_1:51521706-51521725 | None:intergenic | 30.0% |
| AGGCTTCAAGTAATTGAATT+TGG | - | chr6_1:51521759-51521778 | None:intergenic | 30.0% | |
| ! | CATATGATAATAATGGGGAT+AGG | - | chr6_1:51521779-51521798 | None:intergenic | 30.0% |
| ATATTCCTGTGTTTCAAGAA+TGG | + | chr6_1:51521819-51521838 | Msa0887960:CDS | 30.0% | |
| ! | GTAACAGAAACTAGTATTGA+AGG | + | chr6_1:51520668-51520687 | Msa0887960:intron | 30.0% |
| !! | ATCGTTTTTCACTGTTTATG+AGG | + | chr6_1:51520913-51520932 | Msa0887960:intron | 30.0% |
| !!! | CAAATTCTTTTGAGGTTACT+AGG | - | chr6_1:51520952-51520971 | None:intergenic | 30.0% |
| ! | ACGGTAATAATTCCCTTTTA+TGG | - | chr6_1:51521265-51521284 | None:intergenic | 30.0% |
| AAGGGAATTATTACCGTAAA+AGG | + | chr6_1:51521268-51521287 | Msa0887960:intron | 30.0% | |
| AATATATGGGAAATGCTAAC+CGG | - | chr6_1:51521393-51521412 | None:intergenic | 30.0% | |
| GACAAGAAATTAACCATAAC+TGG | + | chr6_1:51521610-51521629 | Msa0887960:CDS | 30.0% | |
| AGTTTACTTACTACATGTAC+TGG | - | chr6_1:51521646-51521665 | None:intergenic | 30.0% | |
| ATGCTGAAATAGTTTCTGTT+GGG | + | chr6_1:51521680-51521699 | Msa0887960:CDS | 30.0% | |
| ! | TTCTTCTTTTCATCTTTTGC+AGG | - | chr6_1:51521706-51521725 | None:intergenic | 30.0% |
| AGGCTTCAAGTAATTGAATT+TGG | - | chr6_1:51521759-51521778 | None:intergenic | 30.0% | |
| ! | CATATGATAATAATGGGGAT+AGG | - | chr6_1:51521779-51521798 | None:intergenic | 30.0% |
| ATATTCCTGTGTTTCAAGAA+TGG | + | chr6_1:51521819-51521838 | Msa0887960:CDS | 30.0% | |
| TAAAAGAAGAGCTAGGGTAT+TGG | - | chr6_1:51520508-51520527 | None:intergenic | 35.0% | |
| ! | ACAGAAACTAGTATTGAAGG+TGG | + | chr6_1:51520671-51520690 | Msa0887960:intron | 35.0% |
| ! | AGTCTTCATAGCTTTTTGCT+TGG | - | chr6_1:51520715-51520734 | None:intergenic | 35.0% |
| CAAAGTTGACATTACCAGAA+AGG | - | chr6_1:51520746-51520765 | None:intergenic | 35.0% | |
| ! | GTTTTTCACTGTTTATGAGG+TGG | + | chr6_1:51520916-51520935 | Msa0887960:intron | 35.0% |
| ACTCAAGTGGTAAAAGATTG+CGG | + | chr6_1:51521156-51521175 | Msa0887960:intron | 35.0% | |
| CATGCTGAAATAGTTTCTGT+TGG | + | chr6_1:51521679-51521698 | Msa0887960:CDS | 35.0% | |
| !! | ATTTGGTTCTTCTTCACATC+AGG | - | chr6_1:51521742-51521761 | None:intergenic | 35.0% |
| TTGTTCCATTCTTGAAACAC+AGG | - | chr6_1:51521827-51521846 | None:intergenic | 35.0% | |
| ATCATGAGCTTGTAACATGT+TGG | + | chr6_1:51521913-51521932 | Msa0887960:three_prime_UTR | 35.0% | |
| TGTTCAATTGTGCAAACAGA+GGG | + | chr6_1:51521963-51521982 | Msa0887960:three_prime_UTR | 35.0% | |
| TAAAAGAAGAGCTAGGGTAT+TGG | - | chr6_1:51520508-51520527 | None:intergenic | 35.0% | |
| ! | ACAGAAACTAGTATTGAAGG+TGG | + | chr6_1:51520671-51520690 | Msa0887960:intron | 35.0% |
| ! | AGTCTTCATAGCTTTTTGCT+TGG | - | chr6_1:51520715-51520734 | None:intergenic | 35.0% |
| CAAAGTTGACATTACCAGAA+AGG | - | chr6_1:51520746-51520765 | None:intergenic | 35.0% | |
| ! | GTTTTTCACTGTTTATGAGG+TGG | + | chr6_1:51520916-51520935 | Msa0887960:intron | 35.0% |
| ACTCAAGTGGTAAAAGATTG+CGG | + | chr6_1:51521156-51521175 | Msa0887960:intron | 35.0% | |
| CATGCTGAAATAGTTTCTGT+TGG | + | chr6_1:51521679-51521698 | Msa0887960:CDS | 35.0% | |
| !! | ATTTGGTTCTTCTTCACATC+AGG | - | chr6_1:51521742-51521761 | None:intergenic | 35.0% |
| TTGTTCCATTCTTGAAACAC+AGG | - | chr6_1:51521827-51521846 | None:intergenic | 35.0% | |
| ATCATGAGCTTGTAACATGT+TGG | + | chr6_1:51521913-51521932 | Msa0887960:three_prime_UTR | 35.0% | |
| TGTTCAATTGTGCAAACAGA+GGG | + | chr6_1:51521963-51521982 | Msa0887960:three_prime_UTR | 35.0% | |
| AAAGCTATGAAGACTGTCTC+AGG | + | chr6_1:51520720-51520739 | Msa0887960:CDS | 40.0% | |
| CGACATAAGTGTAACTCAAG+TGG | + | chr6_1:51521143-51521162 | Msa0887960:intron | 40.0% | |
| TTAAGGTCTAATTGTGCCCT+CGG | + | chr6_1:51521222-51521241 | Msa0887960:intron | 40.0% | |
| AGAATGGAACAAGATCCTGT+TGG | + | chr6_1:51521835-51521854 | Msa0887960:CDS | 40.0% | |
| CAGCATATGATACATCCAAC+AGG | - | chr6_1:51521853-51521872 | None:intergenic | 40.0% | |
| GTGTTCAATTGTGCAAACAG+AGG | + | chr6_1:51521962-51521981 | Msa0887960:three_prime_UTR | 40.0% | |
| AAAGCTATGAAGACTGTCTC+AGG | + | chr6_1:51520720-51520739 | Msa0887960:CDS | 40.0% | |
| CGACATAAGTGTAACTCAAG+TGG | + | chr6_1:51521143-51521162 | Msa0887960:intron | 40.0% | |
| TTAAGGTCTAATTGTGCCCT+CGG | + | chr6_1:51521222-51521241 | Msa0887960:intron | 40.0% | |
| AGAATGGAACAAGATCCTGT+TGG | + | chr6_1:51521835-51521854 | Msa0887960:CDS | 40.0% | |
| CAGCATATGATACATCCAAC+AGG | - | chr6_1:51521853-51521872 | None:intergenic | 40.0% | |
| GTGTTCAATTGTGCAAACAG+AGG | + | chr6_1:51521962-51521981 | Msa0887960:three_prime_UTR | 40.0% | |
| TAAGGTCTAATTGTGCCCTC+GGG | + | chr6_1:51521223-51521242 | Msa0887960:intron | 45.0% | |
| ATGTTTAACTAGTGCCCCGA+GGG | - | chr6_1:51521241-51521260 | None:intergenic | 45.0% | |
| TATGTTTAACTAGTGCCCCG+AGG | - | chr6_1:51521242-51521261 | None:intergenic | 45.0% | |
| TATATCCTTAACCAGTGCCC+CGG | + | chr6_1:51521363-51521382 | Msa0887960:intron | 45.0% | |
| TGGATCTGTGTCTCCAGTTA+TGG | - | chr6_1:51521626-51521645 | None:intergenic | 45.0% | |
| TAAGGTCTAATTGTGCCCTC+GGG | + | chr6_1:51521223-51521242 | Msa0887960:intron | 45.0% | |
| ATGTTTAACTAGTGCCCCGA+GGG | - | chr6_1:51521241-51521260 | None:intergenic | 45.0% | |
| TATGTTTAACTAGTGCCCCG+AGG | - | chr6_1:51521242-51521261 | None:intergenic | 45.0% | |
| TATATCCTTAACCAGTGCCC+CGG | + | chr6_1:51521363-51521382 | Msa0887960:intron | 45.0% | |
| TGGATCTGTGTCTCCAGTTA+TGG | - | chr6_1:51521626-51521645 | None:intergenic | 45.0% | |
| !!! | TATTTATTTTAATTGAAAAA+TGG | - | chr6_1:51521009-51521028 | None:intergenic | 5.0% |
| !!! | TATTTATTTTAATTGAAAAA+TGG | - | chr6_1:51521009-51521028 | None:intergenic | 5.0% |
| AAGACTGTCTCAGGCCTTTC+TGG | + | chr6_1:51520729-51520748 | Msa0887960:CDS | 50.0% | |
| AAGGTCTAATTGTGCCCTCG+GGG | + | chr6_1:51521224-51521243 | Msa0887960:intron | 50.0% | |
| ATATCCTTAACCAGTGCCCC+GGG | + | chr6_1:51521364-51521383 | Msa0887960:intron | 50.0% | |
| AAGACTGTCTCAGGCCTTTC+TGG | + | chr6_1:51520729-51520748 | Msa0887960:CDS | 50.0% | |
| AAGGTCTAATTGTGCCCTCG+GGG | + | chr6_1:51521224-51521243 | Msa0887960:intron | 50.0% | |
| ATATCCTTAACCAGTGCCCC+GGG | + | chr6_1:51521364-51521383 | Msa0887960:intron | 50.0% | |
| AAATGCTAACCGGTGTCCCG+GGG | - | chr6_1:51521383-51521402 | None:intergenic | 55.0% | |
| GAAATGCTAACCGGTGTCCC+GGG | - | chr6_1:51521384-51521403 | None:intergenic | 55.0% | |
| GGAAATGCTAACCGGTGTCC+CGG | - | chr6_1:51521385-51521404 | None:intergenic | 55.0% | |
| AAATGCTAACCGGTGTCCCG+GGG | - | chr6_1:51521383-51521402 | None:intergenic | 55.0% | |
| GAAATGCTAACCGGTGTCCC+GGG | - | chr6_1:51521384-51521403 | None:intergenic | 55.0% | |
| GGAAATGCTAACCGGTGTCC+CGG | - | chr6_1:51521385-51521404 | None:intergenic | 55.0% | |
| !! | GTGTCCCGGGGCACTGGTTA+AGG | - | chr6_1:51521371-51521390 | None:intergenic | 65.0% |
| TAACCAGTGCCCCGGGACAC+CGG | + | chr6_1:51521371-51521390 | Msa0887960:intron | 65.0% | |
| !! | GTGTCCCGGGGCACTGGTTA+AGG | - | chr6_1:51521371-51521390 | None:intergenic | 65.0% |
| TAACCAGTGCCCCGGGACAC+CGG | + | chr6_1:51521371-51521390 | Msa0887960:intron | 65.0% | |
| TAACCGGTGTCCCGGGGCAC+TGG | - | chr6_1:51521377-51521396 | None:intergenic | 70.0% | |
| TAACCGGTGTCCCGGGGCAC+TGG | - | chr6_1:51521377-51521396 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 51520449 | 51522018 | 51520449 | ID=Msa0887960;Name=Msa0887960 |
| chr6_1 | mRNA | 51520449 | 51522018 | 51520449 | ID=Msa0887960-mRNA-1;Parent=Msa0887960;Name=Msa0887960-mRNA-1;_AED=0.12;_eAED=0.12;_QI=130|1|1|1|1|1|3|145|124 |
| chr6_1 | exon | 51520449 | 51520584 | 51520449 | ID=Msa0887960-mRNA-1:exon:10434;Parent=Msa0887960-mRNA-1 |
| chr6_1 | exon | 51520675 | 51520750 | 51520675 | ID=Msa0887960-mRNA-1:exon:10435;Parent=Msa0887960-mRNA-1 |
| chr6_1 | exon | 51521581 | 51522018 | 51521581 | ID=Msa0887960-mRNA-1:exon:10436;Parent=Msa0887960-mRNA-1 |
| chr6_1 | five_prime_UTR | 51520449 | 51520578 | 51520449 | ID=Msa0887960-mRNA-1:five_prime_utr;Parent=Msa0887960-mRNA-1 |
| chr6_1 | CDS | 51520579 | 51520584 | 51520579 | ID=Msa0887960-mRNA-1:cds;Parent=Msa0887960-mRNA-1 |
| chr6_1 | CDS | 51520675 | 51520750 | 51520675 | ID=Msa0887960-mRNA-1:cds;Parent=Msa0887960-mRNA-1 |
| chr6_1 | CDS | 51521581 | 51521873 | 51521581 | ID=Msa0887960-mRNA-1:cds;Parent=Msa0887960-mRNA-1 |
| chr6_1 | three_prime_UTR | 51521874 | 51522018 | 51521874 | ID=Msa0887960-mRNA-1:three_prime_utr;Parent=Msa0887960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
