AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1344890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1344890 MtrunA17_Chr8g0347251 91.379 348 24 3 1 342 1 348 0.0 622
Msa1344890 MtrunA17_Chr7g0275531 43.989 366 136 14 1 339 1 324 8.32e-78 241
Msa1344890 MtrunA17_Chr3g0126391 36.705 346 180 13 12 336 7 334 1.79e-52 176
Msa1344890 MtrunA17_Chr8g0387981 34.595 370 187 11 1 336 1 349 9.15e-52 175
Msa1344890 MtrunA17_Chr7g0244971 35.294 187 97 6 12 193 15 182 2.81e-23 97.8
Msa1344890 MtrunA17_Chr7g0244981 34.426 183 104 4 12 193 14 181 7.79e-23 96.3
Msa1344890 MtrunA17_Chr3g0128671 55.224 67 30 0 127 193 120 186 4.37e-20 89.4
Msa1344890 MtrunA17_Chr8g0350621 31.844 179 104 4 15 193 10 170 1.57e-19 87.0
Msa1344890 MtrunA17_Chr7g0270051 40.972 144 66 6 89 227 3 132 9.77e-19 84.7
Msa1344890 MtrunA17_Chr5g0428351 47.222 72 38 0 127 198 176 247 1.18e-17 82.4
Msa1344890 MtrunA17_Chr8g0334541 44.444 90 43 1 108 197 84 166 1.50e-17 81.6
Msa1344890 MtrunA17_Chr2g0315361 43.158 95 45 2 103 196 124 210 2.00e-17 81.6
Msa1344890 MtrunA17_Chr2g0315381 34.783 138 78 3 108 241 125 254 5.92e-17 80.5
Msa1344890 MtrunA17_Chr7g0224801 56.667 60 23 1 133 192 92 148 1.02e-16 77.0
Msa1344890 MtrunA17_Chr2g0315371 27.041 196 118 5 15 196 19 203 1.73e-16 79.0
Msa1344890 MtrunA17_Chr4g0071521 41.935 93 51 2 104 196 216 305 6.30e-16 77.4
Msa1344890 MtrunA17_Chr8g0387501 43.836 73 39 1 127 199 122 192 1.02e-15 76.3
Msa1344890 MtrunA17_Chr1g0147881 42.697 89 48 2 106 194 235 320 1.24e-15 77.0
Msa1344890 MtrunA17_Chr2g0293481 32.857 140 75 4 103 233 239 368 3.72e-15 76.3
Msa1344890 MtrunA17_Chr7g0270191 29.508 183 98 6 109 288 119 273 1.05e-14 73.6
Msa1344890 MtrunA17_Chr4g0042831 51.724 58 25 1 134 191 145 199 1.72e-14 73.9
Msa1344890 MtrunA17_Chr4g0042831 45.763 59 29 1 133 191 277 332 2.58e-11 64.3
Msa1344890 MtrunA17_Chr5g0401821 44.186 86 45 2 106 191 172 254 2.12e-14 72.4
Msa1344890 MtrunA17_Chr8g0379461 30.348 201 109 10 109 293 45 230 2.19e-14 72.0
Msa1344890 MtrunA17_Chr8g0386241 47.458 59 28 1 133 191 102 157 2.90e-14 70.1
Msa1344890 MtrunA17_Chr2g0284321 31.624 117 73 2 108 224 9 118 4.57e-14 70.5
Msa1344890 MtrunA17_Chr7g0248691 28.358 201 122 5 94 283 114 303 5.36e-14 72.0
Msa1344890 MtrunA17_Chr7g0249311 35.537 121 60 4 76 191 125 232 5.54e-14 73.2
Msa1344890 MtrunA17_Chr7g0218081 41.304 92 42 5 133 222 227 308 5.89e-14 72.8
Msa1344890 MtrunA17_Chr7g0218081 44.068 59 30 1 133 191 409 464 3.69e-11 64.3
Msa1344890 MtrunA17_Chr8g0348311 38.000 100 60 1 93 192 114 211 8.29e-14 71.6
Msa1344890 MtrunA17_Chr5g0431811 47.619 63 33 0 134 196 672 734 1.16e-13 72.4
Msa1344890 MtrunA17_Chr1g0202461 40.476 84 43 2 108 191 240 316 1.66e-13 70.9
Msa1344890 MtrunA17_Chr5g0443131 49.153 59 27 1 133 191 156 211 1.80e-13 70.1
Msa1344890 MtrunA17_Chr4g0053281 43.678 87 45 3 106 191 238 321 1.94e-13 70.5
Msa1344890 MtrunA17_Chr3g0079691 53.448 58 23 2 134 191 280 333 1.98e-13 71.2
Msa1344890 MtrunA17_Chr1g0194481 39.130 92 48 2 101 192 130 213 2.50e-13 70.1
Msa1344890 MtrunA17_Chr5g0418781 50.847 59 26 1 133 191 123 178 3.84e-13 68.9
Msa1344890 MtrunA17_Chr4g0051881 49.153 59 27 1 133 191 177 232 5.75e-13 68.9
Msa1344890 MtrunA17_Chr7g0238921 31.646 158 83 5 52 191 28 178 6.12e-13 68.6
Msa1344890 MtrunA17_Chr5g0445311 48.571 70 30 3 124 191 188 253 6.57e-13 69.7
Msa1344890 MtrunA17_Chr8g0383351 42.466 73 39 1 133 205 159 228 1.13e-12 67.0
Msa1344890 MtrunA17_Chr3g0101131 49.231 65 29 2 127 191 236 296 1.16e-12 68.9
Msa1344890 MtrunA17_Chr3g0101131 38.462 91 46 3 108 191 382 469 3.92e-11 64.3
Msa1344890 MtrunA17_Chr7g0270831 49.275 69 28 2 133 201 215 276 1.42e-12 68.2
Msa1344890 MtrunA17_Chr5g0418191 42.045 88 42 3 133 220 150 228 1.69e-12 68.2
Msa1344890 MtrunA17_Chr5g0418191 44.068 59 30 1 133 191 319 374 2.01e-11 64.7
Msa1344890 MtrunA17_Chr2g0288871 35.036 137 72 5 75 201 236 365 2.13e-12 68.2
Msa1344890 MtrunA17_Chr7g0248721 40.964 83 40 3 109 191 121 194 2.25e-12 65.9
Msa1344890 MtrunA17_Chr3g0129361 42.466 73 39 1 133 205 143 212 2.48e-12 65.5
Msa1344890 MtrunA17_Chr2g0322391 52.542 59 26 1 133 191 348 404 2.55e-12 67.8
Msa1344890 MtrunA17_Chr7g0263531 50.877 57 24 2 135 191 190 242 3.14e-12 67.4
Msa1344890 MtrunA17_Chr2g0319961 36.082 97 52 3 98 191 46 135 4.46e-12 65.5
Msa1344890 MtrunA17_Chr4g0075201 51.667 60 27 1 133 192 266 323 5.77e-12 66.6
Msa1344890 MtrunA17_Chr7g0228941 44.595 74 38 2 118 191 37 107 6.02e-12 62.4
Msa1344890 MtrunA17_Chr4g0068541 45.763 59 29 1 133 191 207 262 6.15e-12 66.2
Msa1344890 MtrunA17_Chr8g0335811 45.588 68 31 2 133 197 153 217 9.32e-12 63.9
Msa1344890 MtrunA17_Chr5g0447701 46.154 65 32 1 127 191 245 306 9.41e-12 65.5
Msa1344890 MtrunA17_Chr4g0004911 36.364 110 51 4 105 207 152 249 9.59e-12 65.9
Msa1344890 MtrunA17_Chr7g0243891 47.222 72 32 3 134 203 216 283 1.21e-11 65.9
Msa1344890 MtrunA17_Chr3g0136961 47.458 59 29 1 133 191 137 193 1.29e-11 64.7
Msa1344890 MtrunA17_Chr1g0184691 47.368 57 28 1 135 191 294 348 1.36e-11 65.1
Msa1344890 MtrunA17_Chr3g0139021 48.387 62 30 1 135 196 315 374 1.51e-11 65.1
Msa1344890 MtrunA17_Chr1g0150281 50.847 59 27 1 133 191 139 195 1.97e-11 63.9
Msa1344890 MtrunA17_Chr3g0106491 45.000 60 30 1 133 192 364 420 2.04e-11 65.1
Msa1344890 MtrunA17_Chr3g0106491 34.146 123 65 4 134 256 198 304 7.66e-11 63.2
Msa1344890 MtrunA17_Chr7g0249301 35.000 100 57 3 125 220 53 148 2.49e-11 64.3
Msa1344890 MtrunA17_Chr5g0432161 48.276 58 26 2 134 191 244 297 4.90e-11 63.9
Msa1344890 MtrunA17_Chr1g0150801 36.709 79 44 2 117 192 82 157 6.17e-11 60.5
Msa1344890 MtrunA17_Chr2g0333851 35.955 89 52 2 122 207 154 240 6.63e-11 62.8
Msa1344890 MtrunA17_Chr4g0051181 46.479 71 31 2 131 201 240 303 8.21e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1344890 AT4G23810.1 37.719 228 108 5 2 201 4 225 3.02e-42 149
Msa1344890 AT2G46400.1 35.636 275 135 8 8 270 4 248 2.51e-39 141
Msa1344890 AT4G11070.1 39.331 239 110 6 3 220 2 226 9.83e-39 140
Msa1344890 AT5G24110.1 37.778 180 96 4 91 267 72 238 1.90e-38 139
Msa1344890 AT4G11070.2 38.288 222 104 6 3 220 2 194 9.82e-38 136
Msa1344890 AT3G56400.1 31.034 203 119 3 6 204 5 190 4.42e-24 100
Msa1344890 AT2G40750.1 49.020 102 46 2 109 205 122 222 1.39e-23 100
Msa1344890 AT2G40740.1 53.968 63 29 0 134 196 173 235 7.44e-20 88.6
Msa1344890 AT2G40740.3 53.968 63 29 0 134 196 182 244 8.72e-20 88.6
Msa1344890 AT5G45260.1 34.682 173 93 4 48 216 1129 1285 6.75e-19 88.6
Msa1344890 AT2G23320.1 35.897 117 64 3 75 191 190 295 1.79e-15 76.6
Msa1344890 AT4G24240.1 38.017 121 62 5 71 191 229 336 3.54e-15 75.9
Msa1344890 AT2G30590.1 40.404 99 52 3 106 204 286 377 5.89e-15 75.5
Msa1344890 AT4G31550.1 40.594 101 57 2 96 196 209 306 1.07e-14 74.3
Msa1344890 AT2G24570.1 41.121 107 57 3 106 209 216 319 1.29e-14 73.9
Msa1344890 AT5G52830.1 43.529 85 41 2 108 192 144 221 1.42e-14 74.3
Msa1344890 AT4G23550.1 33.051 118 72 2 100 217 106 216 1.63e-14 73.6
Msa1344890 AT1G66550.1 32.335 167 97 4 47 210 33 186 2.76e-14 72.4
Msa1344890 AT4G31550.2 44.318 88 46 2 109 196 221 305 3.00e-14 73.2
Msa1344890 AT2G03340.1 46.667 75 31 3 129 203 245 310 3.38e-14 73.9
Msa1344890 AT4G01250.1 44.048 84 39 2 108 191 108 183 3.71e-14 72.4
Msa1344890 AT5G28650.1 44.186 86 45 2 106 191 235 317 5.57e-14 72.4
Msa1344890 AT1G69310.4 36.893 103 56 3 94 196 112 205 7.03e-14 71.6
Msa1344890 AT1G69310.2 36.893 103 56 3 94 196 112 205 7.03e-14 71.6
Msa1344890 AT1G69310.1 36.893 103 56 3 94 196 112 205 7.03e-14 71.6
Msa1344890 AT1G66550.2 43.590 78 42 1 135 210 104 181 9.01e-14 70.5
Msa1344890 AT3G58710.2 42.157 102 51 4 95 191 27 125 1.14e-13 70.9
Msa1344890 AT5G49520.1 48.333 60 28 1 133 192 220 276 1.25e-13 71.6
Msa1344890 AT1G66600.1 39.726 73 44 0 121 193 90 162 1.45e-13 70.1
Msa1344890 AT1G29280.1 35.897 117 58 4 78 191 27 129 1.50e-13 70.1
Msa1344890 AT2G34830.2 33.577 137 80 3 64 191 145 279 1.76e-13 71.6
Msa1344890 AT3G58710.1 40.196 102 54 3 95 191 27 126 1.85e-13 70.1
Msa1344890 AT2G34830.1 33.577 137 80 3 64 191 136 270 2.08e-13 71.2
Msa1344890 AT1G30650.1 40.449 89 48 2 103 191 189 272 2.21e-13 71.2
Msa1344890 AT2G37260.3 40.244 82 46 1 110 191 245 323 2.42e-13 70.5
Msa1344890 AT2G37260.3 40.659 91 46 4 114 204 69 151 6.04e-12 66.2
Msa1344890 AT2G37260.2 40.244 82 46 1 110 191 243 321 2.65e-13 70.5
Msa1344890 AT2G37260.2 40.659 91 46 4 114 204 67 149 6.62e-12 66.2
Msa1344890 AT2G37260.1 40.244 82 46 1 110 191 325 403 2.85e-13 70.9
Msa1344890 AT2G37260.1 40.659 91 46 4 114 204 149 231 5.22e-12 67.0
Msa1344890 AT1G13960.1 46.575 73 30 3 133 205 228 291 2.90e-13 70.9
Msa1344890 AT1G13960.1 44.068 59 30 1 133 191 408 463 2.45e-11 65.1
Msa1344890 AT4G18170.1 42.045 88 47 2 105 191 142 226 3.05e-13 70.1
Msa1344890 AT4G01720.1 39.823 113 58 4 91 201 195 299 3.40e-13 70.9
Msa1344890 AT1G29860.1 40.909 88 43 3 119 205 120 199 3.61e-13 69.3
Msa1344890 AT5G13080.1 50.000 60 27 1 133 192 66 122 3.94e-13 66.6
Msa1344890 AT3G04670.1 43.023 86 46 2 106 191 235 317 3.97e-13 69.7
Msa1344890 AT1G13960.2 46.575 73 30 3 133 205 75 138 4.68e-13 69.7
Msa1344890 AT1G13960.2 44.068 59 30 1 133 191 255 310 3.88e-11 63.9
Msa1344890 AT3G01970.1 50.000 60 27 1 133 192 64 120 5.11e-13 66.2
Msa1344890 AT1G66560.1 38.158 76 47 0 118 193 87 162 5.67e-13 68.2
Msa1344890 AT2G04880.2 47.458 59 28 1 133 191 282 337 6.47e-13 69.7
Msa1344890 AT2G04880.1 47.458 59 28 1 133 191 306 361 8.73e-13 69.3
Msa1344890 AT2G47260.1 40.476 84 47 1 133 216 173 253 1.55e-12 68.2
Msa1344890 AT4G26640.7 38.889 90 39 3 133 222 340 413 1.96e-12 68.6
Msa1344890 AT4G26640.7 49.153 59 26 2 133 191 170 224 1.26e-11 65.9
Msa1344890 AT3G01080.3 50.847 59 25 2 133 191 204 258 2.01e-12 67.8
Msa1344890 AT4G26640.2 38.889 90 39 3 133 222 380 453 2.14e-12 68.6
Msa1344890 AT4G26640.2 49.153 59 26 2 133 191 210 264 1.39e-11 65.9
Msa1344890 AT4G26440.1 42.045 88 41 4 133 220 177 254 2.20e-12 68.6
Msa1344890 AT4G26440.1 48.333 60 28 1 133 192 371 427 1.99e-11 65.5
Msa1344890 AT4G26640.1 38.889 90 39 3 133 222 308 381 2.47e-12 68.2
Msa1344890 AT4G26640.1 49.153 59 26 2 133 191 138 192 1.71e-11 65.5
Msa1344890 AT2G46130.1 47.458 59 28 1 133 191 29 84 2.66e-12 63.2
Msa1344890 AT4G26640.5 38.889 90 39 3 133 222 204 277 2.88e-12 67.4
Msa1344890 AT4G26640.5 49.153 59 26 2 133 191 34 88 1.84e-11 65.1
Msa1344890 AT4G26640.6 38.889 90 39 3 133 222 204 277 2.88e-12 67.4
Msa1344890 AT4G26640.6 49.153 59 26 2 133 191 34 88 1.84e-11 65.1
Msa1344890 AT4G26640.4 38.889 90 39 3 133 222 204 277 2.88e-12 67.4
Msa1344890 AT4G26640.4 49.153 59 26 2 133 191 34 88 1.84e-11 65.1
Msa1344890 AT4G26640.3 38.889 90 39 3 133 222 204 277 2.88e-12 67.4
Msa1344890 AT4G26640.3 49.153 59 26 2 133 191 34 88 1.84e-11 65.1
Msa1344890 AT2G25000.2 38.298 94 50 2 132 225 101 186 3.11e-12 65.9
Msa1344890 AT2G25000.4 38.298 94 50 2 132 225 101 186 3.11e-12 65.9
Msa1344890 AT2G25000.3 38.298 94 50 2 132 225 123 208 3.28e-12 66.2
Msa1344890 AT5G46350.1 37.363 91 47 3 133 221 182 264 3.63e-12 67.0
Msa1344890 AT2G25000.1 38.298 94 50 2 132 225 144 229 4.51e-12 65.9
Msa1344890 AT3G01080.2 50.847 59 25 2 133 191 204 258 4.59e-12 67.4
Msa1344890 AT4G04450.2 49.275 69 28 2 133 201 197 258 4.70e-12 67.0
Msa1344890 AT5G56270.1 48.438 64 29 2 128 191 267 326 4.79e-12 67.4
Msa1344890 AT3G01080.1 50.847 59 25 2 133 191 166 220 5.29e-12 67.0
Msa1344890 AT4G39410.1 38.202 89 52 1 109 197 198 283 5.44e-12 66.2
Msa1344890 AT1G62300.1 49.275 69 28 2 133 201 311 372 5.91e-12 67.0
Msa1344890 AT2G30250.1 52.632 57 24 1 135 191 329 382 6.54e-12 66.6
Msa1344890 AT4G04450.1 49.275 69 28 2 133 201 291 352 7.79e-12 66.6
Msa1344890 AT2G44745.1 47.458 59 28 1 133 191 144 199 1.00e-11 64.3
Msa1344890 AT4G22070.4 42.553 94 44 3 108 201 274 357 1.17e-11 66.2
Msa1344890 AT4G22070.3 42.553 94 44 3 108 201 274 357 1.17e-11 66.2
Msa1344890 AT4G22070.2 42.553 94 44 3 108 201 274 357 1.17e-11 66.2
Msa1344890 AT4G22070.1 42.553 94 44 3 108 201 274 357 1.17e-11 66.2
Msa1344890 AT1G80590.1 29.333 150 84 3 135 283 86 214 2.62e-11 63.2
Msa1344890 AT5G41570.1 36.145 83 45 2 109 191 78 152 4.87e-11 61.6
Msa1344890 AT5G01900.1 45.763 59 32 0 135 193 111 169 5.42e-11 62.8
Msa1344890 AT5G15130.2 49.180 61 29 1 132 192 183 241 5.93e-11 63.9
Msa1344890 AT1G80840.1 38.298 94 48 3 122 212 131 217 6.11e-11 63.2
Msa1344890 AT4G12020.10 49.153 59 26 2 133 191 467 521 6.23e-11 64.3
Msa1344890 AT4G12020.2 49.153 59 26 2 133 191 467 521 6.41e-11 64.3
Msa1344890 AT2G38470.1 51.724 58 24 2 134 191 184 237 6.42e-11 63.9
Msa1344890 AT4G12020.4 49.153 59 26 2 133 191 467 521 6.47e-11 64.3
Msa1344890 AT4G12020.1 49.153 59 26 2 133 191 467 521 6.49e-11 64.3
Msa1344890 AT4G12020.9 49.153 59 26 2 133 191 467 521 6.49e-11 64.3
Msa1344890 AT4G12020.3 49.153 59 26 2 133 191 467 521 6.58e-11 64.3
Msa1344890 AT4G12020.7 49.153 59 26 2 133 191 467 521 6.60e-11 64.3
Msa1344890 AT5G15130.1 49.180 61 29 1 132 192 225 283 6.71e-11 63.9
Msa1344890 AT4G12020.6 49.153 59 26 2 133 191 467 521 6.71e-11 64.3
Msa1344890 AT4G12020.8 49.153 59 26 2 133 191 467 521 6.71e-11 64.3
Msa1344890 AT1G68150.1 47.887 71 30 2 131 201 232 295 6.98e-11 63.2
Msa1344890 AT4G12020.5 49.153 59 26 2 133 191 400 454 7.04e-11 64.3
Msa1344890 AT1G64000.1 45.763 59 29 1 133 191 113 168 7.63e-11 61.2
Msa1344890 AT3G62340.1 46.667 60 29 1 133 192 117 173 8.32e-11 62.4

Find 71 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGAATTGGCAATAGAATT+TGG 0.147921 tig0006912:+49976 None:intergenic
GTAGATCAGGATTAGTAAAA+TGG 0.232043 tig0006912:-49825 Msa1344890:three_prime_UTR
CTGCTTGTCACTATTGGATA+TGG 0.238656 tig0006912:-50043 Msa1344890:CDS
TGAGTCTTGGACCTCACTTT+TGG 0.250506 tig0006912:+52169 None:intergenic
ATGAGTGAGGAGGAGATATA+AGG 0.253287 tig0006912:+52646 None:intergenic
ATCAAAATCCATTGGGGAAT+TGG 0.278398 tig0006912:+49963 None:intergenic
AAAGGGATATTTGGTAAAAT+AGG 0.282474 tig0006912:+52498 None:intergenic
GCATGTGTGTCTTCCTTTGT+AGG 0.282849 tig0006912:+50347 None:intergenic
CATGATTGAAAATGATTTCA+TGG 0.299823 tig0006912:-50106 Msa1344890:CDS
TAGCACAAGAAAGGGATATT+TGG 0.338760 tig0006912:+52489 None:intergenic
GAGCAAGTGAAGGTTTATTC+TGG 0.340277 tig0006912:-51949 Msa1344890:CDS
ATGGGAGTTTCTTGTTAGAT+TGG 0.341676 tig0006912:+50322 None:intergenic
ACTTCCTTCCCACGTTAGTT+AGG 0.345213 tig0006912:-49739 Msa1344890:three_prime_UTR
AACATTAAGTGTGAAGAAAT+TGG 0.349506 tig0006912:-52437 Msa1344890:CDS
TGAGTGAGGAGGAGATATAA+GGG 0.350623 tig0006912:+52647 None:intergenic
AGTGAGACTGAGATAATTTC+AGG 0.355518 tig0006912:-50000 Msa1344890:CDS
GGGAATTGGCAATAGAATTT+GGG 0.359861 tig0006912:+49977 None:intergenic
TATGGACAAAAGGATATTCT+TGG 0.372931 tig0006912:-51880 Msa1344890:CDS
GGTTATAGCTGGAGAAAGTA+TGG 0.376671 tig0006912:-51898 Msa1344890:CDS
ATGAATTCTCATTGTTCAAA+TGG 0.381161 tig0006912:-52197 Msa1344890:CDS
TGTGCTTGAACTTTGAGTCT+TGG 0.395293 tig0006912:+52156 None:intergenic
ATGATGATGGAGAGAAAATT+TGG 0.413042 tig0006912:+52363 None:intergenic
TATAGAGATCAAAATCCATT+GGG 0.432731 tig0006912:+49956 None:intergenic
TGGGAGTTTCTTGTTAGATT+GGG 0.445225 tig0006912:+50323 None:intergenic
CTGGAGAAAGTATGGACAAA+AGG 0.452781 tig0006912:-51890 Msa1344890:CDS
AAATGATTTCATGGAAAATG+AGG 0.458182 tig0006912:-50097 Msa1344890:CDS
CATGGTTATTGCAGTCTCAA+TGG 0.475768 tig0006912:+52265 None:intergenic
TCCCTCATTACCCTTTGCCA+TGG 0.480628 tig0006912:+52247 None:intergenic
TGTGAAGAAATTGGTCTCAT+TGG 0.485916 tig0006912:-52428 Msa1344890:CDS
AACCATGGCAAAGGGTAATG+AGG 0.498135 tig0006912:-52249 Msa1344890:CDS
TAATTATGATAGCACAAGAA+AGG 0.499097 tig0006912:+52480 None:intergenic
GAAATTATCTCAGTCTCACT+TGG 0.500825 tig0006912:+50003 None:intergenic
ACAAACATGTGTCCAAGAAA+AGG 0.507877 tig0006912:-52136 Msa1344890:intron
AAAGCTAATGAAATGCCAAA+TGG 0.511471 tig0006912:+52554 None:intergenic
CTGTTGAGGATGGTTATAGC+TGG 0.522098 tig0006912:-51909 Msa1344890:CDS
AATTATGATAGCACAAGAAA+GGG 0.523403 tig0006912:+52481 None:intergenic
TTCAGACCCTATTGATGGAG+AGG 0.523902 tig0006912:+50158 None:intergenic
TTCTTGGAGCTAAGTTTCCA+AGG 0.535081 tig0006912:-51864 Msa1344890:intron
TTCTATTGCCAATTCCCCAA+TGG 0.537538 tig0006912:-49971 Msa1344890:CDS
GATGATGTTGATGATGATGA+TGG 0.541386 tig0006912:+52350 None:intergenic
CTCTCCTAACTAACGTGGGA+AGG 0.552757 tig0006912:+49735 None:intergenic
TTATAGAGATCAAAATCCAT+TGG 0.559577 tig0006912:+49955 None:intergenic
GACTGCAATAACCATGGCAA+AGG 0.559897 tig0006912:-52258 Msa1344890:CDS
TTCACTTGCTCTGTCCACTT+AGG 0.560248 tig0006912:+51961 None:intergenic
TCTTTGTTCTGTTGTAACGT+AGG 0.571267 tig0006912:-49633 Msa1344890:three_prime_UTR
GATATGGACAGCACTGGACT+AGG 0.571491 tig0006912:-50027 Msa1344890:CDS
TATTCTGGAACAGCAGCTGA+AGG 0.574098 tig0006912:-51934 Msa1344890:CDS
ACTGCAATAACCATGGCAAA+GGG 0.574855 tig0006912:-52257 Msa1344890:CDS
ACCATGGCAAAGGGTAATGA+GGG 0.583479 tig0006912:-52248 Msa1344890:CDS
ACTAGCACATGAAGAACAAG+TGG 0.596225 tig0006912:+52530 None:intergenic
GAGTGAGGAGGAGATATAAG+GGG 0.596537 tig0006912:+52648 None:intergenic
TTGCTCTGTCCACTTAGGCA+CGG 0.602998 tig0006912:+51966 None:intergenic
TTAGTAAAATGGCAAAGAGG+AGG 0.606211 tig0006912:-49814 Msa1344890:three_prime_UTR
GCTGAAGGATCTGTTGAGGA+TGG 0.616817 tig0006912:-51919 Msa1344890:CDS
CTATTGGATATGGACAGCAC+TGG 0.619978 tig0006912:-50033 Msa1344890:CDS
AGCAGCTGAAGGATCTGTTG+AGG 0.621900 tig0006912:-51923 Msa1344890:CDS
TGTTGAGGAAGTGATGAGTG+AGG 0.632535 tig0006912:+52633 None:intergenic
AAAAGCTCTCCTAACTAACG+TGG 0.634073 tig0006912:+49730 None:intergenic
AAATTTGAGTGGGATTGTTG+AGG 0.634323 tig0006912:+52618 None:intergenic
AAATTATCTCAGTCTCACTT+GGG 0.640870 tig0006912:+50004 None:intergenic
AAATGGAAGTCCCAAAAGTG+AGG 0.645726 tig0006912:-52180 Msa1344890:CDS
ATATGTGAGATAACCTACAA+AGG 0.649008 tig0006912:-50360 Msa1344890:CDS
TAATGACATAAATTTCGACA+TGG 0.657601 tig0006912:-49935 Msa1344890:CDS
GGATTAGTAAAATGGCAAAG+AGG 0.662048 tig0006912:-49817 Msa1344890:three_prime_UTR
CATTGAGACTGCAATAACCA+TGG 0.662559 tig0006912:-52264 Msa1344890:CDS
TAAGTGGACAGAGCAAGTGA+AGG 0.673359 tig0006912:-51959 Msa1344890:CDS
TGAGGAAGTGATGAGTGAGG+AGG 0.682822 tig0006912:+52636 None:intergenic
AAAGCTCTCCTAACTAACGT+GGG 0.695138 tig0006912:+49731 None:intergenic
CTCATTGGTGAACTAATGCA+AGG 0.698867 tig0006912:-52413 Msa1344890:CDS
ATAGAGATCAAAATCCATTG+GGG 0.717113 tig0006912:+49957 None:intergenic
TGCACACATAGACATGCACA+AGG 0.724252 tig0006912:-50429 Msa1344890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGGTTTTTATTTATTATAT+AGG - tig0006912:50783-50802 Msa1344890:intron 10.0%
!!! AATGATATTAAAATTTTTTG+TGG + tig0006912:51722-51741 None:intergenic 10.0%
!!! TTTTTTTTTGAAATTTGAGT+GGG + tig0006912:49690-49709 None:intergenic 15.0%
!!! TTTTTTTTTTGAAATTTGAG+TGG + tig0006912:49691-49710 None:intergenic 15.0%
!!! TCATAATTTTCATTATTCTT+TGG - tig0006912:50286-50305 Msa1344890:CDS 15.0%
!!! AAGTTTTATTTGTTCTATTT+AGG - tig0006912:50764-50783 Msa1344890:intron 15.0%
!!! ATATAGGAATTTTTTTTGAT+TGG - tig0006912:50799-50818 Msa1344890:intron 15.0%
!! AAAAATACTATATCAGATAA+TGG - tig0006912:50905-50924 Msa1344890:intron 15.0%
!! AAAATACTATATCAGATAAT+GGG - tig0006912:50906-50925 Msa1344890:intron 15.0%
!! AAAAATAAAAAATTGTCCTT+TGG + tig0006912:50970-50989 None:intergenic 15.0%
!!! ATTTTTTTTTAAGAATCCAA+AGG - tig0006912:50984-51003 Msa1344890:intron 15.0%
!! AAATTAGAAAGATTTAATTC+TGG - tig0006912:51010-51029 Msa1344890:intron 15.0%
!! TATTTAATGCTAACTTAAAT+TGG + tig0006912:51150-51169 None:intergenic 15.0%
!! ATTGTGTGAATTTATATTAA+TGG + tig0006912:51263-51282 None:intergenic 15.0%
!! AATATAAATTCACACAATTA+TGG - tig0006912:51265-51284 Msa1344890:intron 15.0%
!!! TTCAAGGTTCATTTTTTTAT+AGG - tig0006912:50236-50255 Msa1344890:CDS 20.0%
!!! ATAGGAATTTTTTTTTTCCA+AGG - tig0006912:50254-50273 Msa1344890:CDS 20.0%
!!! GTAATTTTGTCAAATTTACT+AGG + tig0006912:50524-50543 None:intergenic 20.0%
!!! AAGAGTTTTGTTATTCATTA+TGG - tig0006912:50547-50566 Msa1344890:intron 20.0%
!!! AATTTAATTACTTTTGCTTG+AGG - tig0006912:50640-50659 Msa1344890:intron 20.0%
!!! TTTAGACATTATTGGTTAAT+TGG + tig0006912:50867-50886 None:intergenic 20.0%
!! CATTGGAAAAATTTAACAAT+TGG - tig0006912:51090-51109 Msa1344890:intron 20.0%
!! AATCTGACAATTTAAACTAA+TGG + tig0006912:51293-51312 None:intergenic 20.0%
!! ATAGAAACTTTAGATTTCAA+TGG - tig0006912:51455-51474 Msa1344890:intron 20.0%
!!! AAAGAGAATTTTTTTTCTTG+AGG + tig0006912:52079-52098 None:intergenic 20.0%
!!! AGTTTCATTGTTCTTATTTT+TGG + tig0006912:52539-52558 None:intergenic 20.0%
!!! TATTGTATTTCACTATTTTG+AGG - tig0006912:52637-52656 Msa1344890:five_prime_UTR 20.0%
!!! ATTTCTTTTAGTTCTCCATT+TGG - tig0006912:49726-49745 Msa1344890:three_prime_UTR 25.0%
! AAAGGGATATTTGGTAAAAT+AGG + tig0006912:49800-49819 None:intergenic 25.0%
! AATTATGATAGCACAAGAAA+GGG + tig0006912:49817-49836 None:intergenic 25.0%
! TAATTATGATAGCACAAGAA+AGG + tig0006912:49818-49837 None:intergenic 25.0%
! AACATTAAGTGTGAAGAAAT+TGG - tig0006912:49858-49877 Msa1344890:three_prime_UTR 25.0%
! ATGAATTCTCATTGTTCAAA+TGG - tig0006912:50098-50117 Msa1344890:CDS 25.0%
!! TTATTGTTTCCTTTTGAACT+TGG - tig0006912:50204-50223 Msa1344890:CDS 25.0%
!!! CATTATTCTTTGGAATTTTG+CGG - tig0006912:50296-50315 Msa1344890:CDS 25.0%
! GTAAAAAATGATTGTTACCT+TGG + tig0006912:50451-50470 None:intergenic 25.0%
! AGGAATTTAAAGATGCATTA+TGG + tig0006912:50504-50523 None:intergenic 25.0%
! TATATATTAATCTCCTGAGT+CGG + tig0006912:50579-50598 None:intergenic 25.0%
!! AAAAAAGTTATTTGCTGCAT+GGG + tig0006912:50678-50697 None:intergenic 25.0%
!! AAAAAAAGTTATTTGCTGCA+TGG + tig0006912:50679-50698 None:intergenic 25.0%
! ACCAATAATGTCTAAAAAAG+AGG - tig0006912:50871-50890 Msa1344890:intron 25.0%
! CCAATAATGTCTAAAAAAGA+GGG - tig0006912:50872-50891 Msa1344890:intron 25.0%
!! ATCTTTCTAATTTTGTCCTT+TGG + tig0006912:51003-51022 None:intergenic 25.0%
! TAGAAAGATTTAATTCTGGT+AGG - tig0006912:51014-51033 Msa1344890:intron 25.0%
! TACTACTATTCACACAATTA+TGG - tig0006912:51235-51254 Msa1344890:intron 25.0%
!!! TCTTCTTTTTTAAGGAAATC+AGG + tig0006912:51400-51419 None:intergenic 25.0%
!!! GCATATCATCTTCTTTTTTA+AGG + tig0006912:51408-51427 None:intergenic 25.0%
! GTGAATCACAAATTTAATTC+AGG + tig0006912:51430-51449 None:intergenic 25.0%
! ATTATGGAACATATGAAGTA+GGG + tig0006912:51545-51564 None:intergenic 25.0%
! AATTATGGAACATATGAAGT+AGG + tig0006912:51546-51565 None:intergenic 25.0%
!!! GATGGATTATCTTCAAATTA+TGG + tig0006912:51561-51580 None:intergenic 25.0%
! TAATTTGAAGATAATCCATC+TGG - tig0006912:51561-51580 Msa1344890:intron 25.0%
! CAAAATAACCTTAGATTCTA+TGG + tig0006912:51764-51783 None:intergenic 25.0%
!!! ATCTCAACTTTGTTTTTGAT+GGG + tig0006912:51994-52013 None:intergenic 25.0%
!!! AATCTCAACTTTGTTTTTGA+TGG + tig0006912:51995-52014 None:intergenic 25.0%
! TCAAAAACAAAGTTGAGATT+TGG - tig0006912:51995-52014 Msa1344890:intron 25.0%
!! AAAATTCTCTTTTGACAACA+AGG - tig0006912:52087-52106 Msa1344890:intron 25.0%
!! CATGAAATCATTTTCAATCA+TGG + tig0006912:52191-52210 None:intergenic 25.0%
! CATGATTGAAAATGATTTCA+TGG - tig0006912:52189-52208 Msa1344890:CDS 25.0%
! AAATGATTTCATGGAAAATG+AGG - tig0006912:52198-52217 Msa1344890:CDS 25.0%
! TATAGAGATCAAAATCCATT+GGG + tig0006912:52342-52361 None:intergenic 25.0%
! TTATAGAGATCAAAATCCAT+TGG + tig0006912:52343-52362 None:intergenic 25.0%
! TAATGACATAAATTTCGACA+TGG - tig0006912:52360-52379 Msa1344890:CDS 25.0%
AAAGCTAATGAAATGCCAAA+TGG + tig0006912:49744-49763 None:intergenic 30.0%
!! ATGATGATGGAGAGAAAATT+TGG + tig0006912:49935-49954 None:intergenic 30.0%
! TAATCCAGTATACCTTTTCT+TGG + tig0006912:50174-50193 None:intergenic 30.0%
TATGGACAAAAGGATATTCT+TGG - tig0006912:50415-50434 Msa1344890:CDS 30.0%
! AAAAAGTTATTTGCTGCATG+GGG + tig0006912:50677-50696 None:intergenic 30.0%
AAGTTATAAAGTTTGTCGCT+TGG - tig0006912:50726-50745 Msa1344890:intron 30.0%
!!! TTTTTTTTGATTGGTGCAAG+TGG - tig0006912:50808-50827 Msa1344890:intron 30.0%
!!! CAATGATATTTTAGTGAGTG+GGG + tig0006912:50843-50862 None:intergenic 30.0%
!!! CCAATGATATTTTAGTGAGT+GGG + tig0006912:50844-50863 None:intergenic 30.0%
!!! CCCTCTTTTTTAGACATTAT+TGG + tig0006912:50875-50894 None:intergenic 30.0%
ATAATGTCTAAAAAAGAGGG+AGG - tig0006912:50875-50894 Msa1344890:intron 30.0%
TAATGTCTAAAAAAGAGGGA+GGG - tig0006912:50876-50895 Msa1344890:intron 30.0%
!! ACTATATCAGATAATGGGAA+AGG - tig0006912:50911-50930 Msa1344890:intron 30.0%
AGACGATAAAAGTTATCCAA+AGG - tig0006912:50951-50970 Msa1344890:intron 30.0%
! GTACTTATGTGTTATTACTG+AGG - tig0006912:51038-51057 Msa1344890:intron 30.0%
TACTAAAAGAGAAAGGACAT+TGG - tig0006912:51073-51092 Msa1344890:intron 30.0%
AACTTAAATTGGTGCATGAA+TGG + tig0006912:51139-51158 None:intergenic 30.0%
GTTGTCTATAACAGTGAATT+TGG + tig0006912:51194-51213 None:intergenic 30.0%
CTAACCTAAAGTCAAAATGT+AGG - tig0006912:51348-51367 Msa1344890:intron 30.0%
!!! ATGACCTACATTTTGACTTT+AGG + tig0006912:51355-51374 None:intergenic 30.0%
TCAATGGAGATTTCAAATAG+AGG - tig0006912:51471-51490 Msa1344890:intron 30.0%
TTGTTTGTGGTCGAATAATT+AGG - tig0006912:51586-51605 Msa1344890:intron 30.0%
ATATGTGAGATAACCTACAA+AGG - tig0006912:51935-51954 Msa1344890:CDS 30.0%
!!! TTGGGGTTGAATATTTTGAT+TGG + tig0006912:52038-52057 None:intergenic 30.0%
! TGGTTGTATTTTCTCTTCTT+GGG + tig0006912:52056-52075 None:intergenic 30.0%
!!! GAGAATTTTTTTTCTTGAGG+TGG + tig0006912:52076-52095 None:intergenic 30.0%
! AATTTTTCCTCTCCATCAAT+AGG - tig0006912:52130-52149 Msa1344890:intron 30.0%
! ATTTTTCCTCTCCATCAATA+GGG - tig0006912:52131-52150 Msa1344890:intron 30.0%
AAATTATCTCAGTCTCACTT+GGG + tig0006912:52294-52313 None:intergenic 30.0%
ATAGAGATCAAAATCCATTG+GGG + tig0006912:52341-52360 None:intergenic 30.0%
! GTAGATCAGGATTAGTAAAA+TGG - tig0006912:52470-52489 Msa1344890:five_prime_UTR 30.0%
AAATTTGAGTGGGATTGTTG+AGG + tig0006912:49680-49699 None:intergenic 35.0%
TAGCACAAGAAAGGGATATT+TGG + tig0006912:49809-49828 None:intergenic 35.0%
! TGTGAAGAAATTGGTCTCAT+TGG - tig0006912:49867-49886 Msa1344890:three_prime_UTR 35.0%
!! GATGATGTTGATGATGATGA+TGG + tig0006912:49948-49967 None:intergenic 35.0%
ACAAACATGTGTCCAAGAAA+AGG - tig0006912:50159-50178 Msa1344890:CDS 35.0%
! TTGTTTCCTTTTGAACTTGG+TGG - tig0006912:50207-50226 Msa1344890:CDS 35.0%
AATTCACCACCAAGTTCAAA+AGG + tig0006912:50216-50235 None:intergenic 35.0%
!!! AACTTGGTGGTGAATTTTCA+AGG - tig0006912:50220-50239 Msa1344890:CDS 35.0%
AATTATGAGATCGTGAACCT+TGG + tig0006912:50274-50293 None:intergenic 35.0%
ATTATGGTATTATCCGACTC+AGG - tig0006912:50563-50582 Msa1344890:intron 35.0%
CCCACTCACTAAAATATCAT+TGG - tig0006912:50841-50860 Msa1344890:intron 35.0%
!!! GCCAATGATATTTTAGTGAG+TGG + tig0006912:50845-50864 None:intergenic 35.0%
! TTCTCTTTTAGTACAGTGCA+CGG + tig0006912:51066-51085 None:intergenic 35.0%
TGCACTGTACTAAAAGAGAA+AGG - tig0006912:51066-51085 Msa1344890:intron 35.0%
! AATCCATCTGGATTTGTTTG+TGG - tig0006912:51573-51592 Msa1344890:intron 35.0%
CTTAGATTCTATGGTCATGT+AGG + tig0006912:51755-51774 None:intergenic 35.0%
CTACATGACCATAGAATCTA+AGG - tig0006912:51753-51772 Msa1344890:intron 35.0%
! AATTGTGATTTGCAATGCAG+AGG - tig0006912:51833-51852 Msa1344890:intron 35.0%
TGGGAGTTTCTTGTTAGATT+GGG + tig0006912:51975-51994 None:intergenic 35.0%
ATGGGAGTTTCTTGTTAGAT+TGG + tig0006912:51976-51995 None:intergenic 35.0%
! GGTTGTATTTTCTCTTCTTG+GGG + tig0006912:52055-52074 None:intergenic 35.0%
! GTGGTTGTATTTTCTCTTCT+TGG + tig0006912:52057-52076 None:intergenic 35.0%
! ATTCTCTTTTGACAACAAGG+AGG - tig0006912:52090-52109 Msa1344890:intron 35.0%
! TCATTTTCAGACCCTATTGA+TGG + tig0006912:52145-52164 None:intergenic 35.0%
! CATTTTCTGCTTGTCACTAT+TGG - tig0006912:52246-52265 Msa1344890:CDS 35.0%
GAAATTATCTCAGTCTCACT+TGG + tig0006912:52295-52314 None:intergenic 35.0%
AGTGAGACTGAGATAATTTC+AGG - tig0006912:52295-52314 Msa1344890:CDS 35.0%
GGGAATTGGCAATAGAATTT+GGG + tig0006912:52321-52340 None:intergenic 35.0%
ATCAAAATCCATTGGGGAAT+TGG + tig0006912:52335-52354 None:intergenic 35.0%
! GCACTTAGAAATTTTGTGCA+TGG - tig0006912:52430-52449 Msa1344890:CDS 35.0%
!! ACTTGTGAGTTTTGTAGATC+AGG - tig0006912:52457-52476 Msa1344890:exon 35.0%
! GGATTAGTAAAATGGCAAAG+AGG - tig0006912:52478-52497 Msa1344890:five_prime_UTR 35.0%
TTAGTAAAATGGCAAAGAGG+AGG - tig0006912:52481-52500 Msa1344890:five_prime_UTR 35.0%
TCTTTGTTCTGTTGTAACGT+AGG - tig0006912:52662-52681 Msa1344890:five_prime_UTR 35.0%
TGAGTGAGGAGGAGATATAA+GGG + tig0006912:49651-49670 None:intergenic 40.0%
ATGAGTGAGGAGGAGATATA+AGG + tig0006912:49652-49671 None:intergenic 40.0%
ACTAGCACATGAAGAACAAG+TGG + tig0006912:49768-49787 None:intergenic 40.0%
CTCATTGGTGAACTAATGCA+AGG - tig0006912:49882-49901 Msa1344890:exon 40.0%
CATGGTTATTGCAGTCTCAA+TGG + tig0006912:50033-50052 None:intergenic 40.0%
CATTGAGACTGCAATAACCA+TGG - tig0006912:50031-50050 Msa1344890:CDS 40.0%
ACTGCAATAACCATGGCAAA+GGG - tig0006912:50038-50057 Msa1344890:CDS 40.0%
AAATGGAAGTCCCAAAAGTG+AGG - tig0006912:50115-50134 Msa1344890:CDS 40.0%
TGTGCTTGAACTTTGAGTCT+TGG + tig0006912:50142-50161 None:intergenic 40.0%
! GTGTCCAAGAAAAGGTATAC+TGG - tig0006912:50167-50186 Msa1344890:CDS 40.0%
GAGCAAGTGAAGGTTTATTC+TGG - tig0006912:50346-50365 Msa1344890:CDS 40.0%
GGTTATAGCTGGAGAAAGTA+TGG - tig0006912:50397-50416 Msa1344890:CDS 40.0%
! CTGGAGAAAGTATGGACAAA+AGG - tig0006912:50405-50424 Msa1344890:CDS 40.0%
TTCTTGGAGCTAAGTTTCCA+AGG - tig0006912:50431-50450 Msa1344890:CDS 40.0%
AGACTCACACACTATAAGTG+TGG - tig0006912:51611-51630 Msa1344890:intron 40.0%
TTCATGGACACAGAAATGCA+GGG + tig0006912:51669-51688 None:intergenic 40.0%
TTTCATGGACACAGAAATGC+AGG + tig0006912:51670-51689 None:intergenic 40.0%
!! CACTTCAGTTGGTAGTTTCA+TGG + tig0006912:51685-51704 None:intergenic 40.0%
AAACTACCAACTGAAGTGCA+GGG - tig0006912:51687-51706 Msa1344890:intron 40.0%
CTGCTTGTCACTATTGGATA+TGG - tig0006912:52252-52271 Msa1344890:CDS 40.0%
GGGGAATTGGCAATAGAATT+TGG + tig0006912:52322-52341 None:intergenic 40.0%
TTCTATTGCCAATTCCCCAA+TGG - tig0006912:52324-52343 Msa1344890:CDS 40.0%
AAAGCTCTCCTAACTAACGT+GGG + tig0006912:52567-52586 None:intergenic 40.0%
AAAAGCTCTCCTAACTAACG+TGG + tig0006912:52568-52587 None:intergenic 40.0%
! CGTTAGTTAGGAGAGCTTTT+CGG - tig0006912:52568-52587 Msa1344890:five_prime_UTR 40.0%
! GTTAGTTAGGAGAGCTTTTC+GGG - tig0006912:52569-52588 Msa1344890:five_prime_UTR 40.0%
! TTAGTTAGGAGAGCTTTTCG+GGG - tig0006912:52570-52589 Msa1344890:five_prime_UTR 40.0%
GAGTGAGGAGGAGATATAAG+GGG + tig0006912:49650-49669 None:intergenic 45.0%
TGTTGAGGAAGTGATGAGTG+AGG + tig0006912:49665-49684 None:intergenic 45.0%
GACTGCAATAACCATGGCAA+AGG - tig0006912:50037-50056 Msa1344890:CDS 45.0%
AACCATGGCAAAGGGTAATG+AGG - tig0006912:50046-50065 Msa1344890:CDS 45.0%
ACCATGGCAAAGGGTAATGA+GGG - tig0006912:50047-50066 Msa1344890:CDS 45.0%
!! GAGTCTTGGACCTCACTTTT+GGG + tig0006912:50128-50147 None:intergenic 45.0%
! TGAGTCTTGGACCTCACTTT+TGG + tig0006912:50129-50148 None:intergenic 45.0%
TTCACTTGCTCTGTCCACTT+AGG + tig0006912:50337-50356 None:intergenic 45.0%
TAAGTGGACAGAGCAAGTGA+AGG - tig0006912:50336-50355 Msa1344890:CDS 45.0%
!! TATTCTGGAACAGCAGCTGA+AGG - tig0006912:50361-50380 Msa1344890:CDS 45.0%
CTGTTGAGGATGGTTATAGC+TGG - tig0006912:50386-50405 Msa1344890:CDS 45.0%
TTGATTGGTGCAAGTGGCTT+TGG - tig0006912:50814-50833 Msa1344890:intron 45.0%
TGATTGGTGCAAGTGGCTTT+GGG - tig0006912:50815-50834 Msa1344890:intron 45.0%
CGACCACAAACAAATCCAGA+TGG + tig0006912:51579-51598 None:intergenic 45.0%
GTGTGGAGAAGTGAGAAATC+CGG - tig0006912:51628-51647 Msa1344890:intron 45.0%
TGTGGAGAAGTGAGAAATCC+GGG - tig0006912:51629-51648 Msa1344890:intron 45.0%
TCATGGACACAGAAATGCAG+GGG + tig0006912:51668-51687 None:intergenic 45.0%
GAAACTACCAACTGAAGTGC+AGG - tig0006912:51686-51705 Msa1344890:intron 45.0%
TGCACACATAGACATGCACA+AGG - tig0006912:51866-51885 Msa1344890:CDS 45.0%
GCATGTGTGTCTTCCTTTGT+AGG + tig0006912:51951-51970 None:intergenic 45.0%
TTCAGACCCTATTGATGGAG+AGG + tig0006912:52140-52159 None:intergenic 45.0%
CTATTGGATATGGACAGCAC+TGG - tig0006912:52262-52281 Msa1344890:CDS 45.0%
ACTTCCTTCCCACGTTAGTT+AGG - tig0006912:52556-52575 Msa1344890:five_prime_UTR 45.0%
TGAGGAAGTGATGAGTGAGG+AGG + tig0006912:49662-49681 None:intergenic 50.0%
TCCCTCATTACCCTTTGCCA+TGG + tig0006912:50051-50070 None:intergenic 50.0%
GCAGAAAAACCGTGCCTAAG+TGG - tig0006912:50320-50339 Msa1344890:CDS 50.0%
TTGCTCTGTCCACTTAGGCA+CGG + tig0006912:50332-50351 None:intergenic 50.0%
AGCAGCTGAAGGATCTGTTG+AGG - tig0006912:50372-50391 Msa1344890:CDS 50.0%
GCTGAAGGATCTGTTGAGGA+TGG - tig0006912:50376-50395 Msa1344890:CDS 50.0%
GTGGAGAAGTGAGAAATCCG+GGG - tig0006912:51630-51649 Msa1344890:intron 50.0%
TGATAGCCCTGCACTTCAGT+TGG + tig0006912:51696-51715 None:intergenic 50.0%
! GATATGGACAGCACTGGACT+AGG - tig0006912:52268-52287 Msa1344890:CDS 50.0%
CTCTCCTAACTAACGTGGGA+AGG + tig0006912:52563-52582 None:intergenic 50.0%
!! GAGAGCTTTTCGGGGTAGTT+AGG - tig0006912:52578-52597 Msa1344890:five_prime_UTR 50.0%
AGGGGTCGGAATTCAAACCC+CGG + tig0006912:51650-51669 None:intergenic 55.0%
GGACACAGAAATGCAGGGGT+CGG + tig0006912:51664-51683 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0006912 gene 49630 52687 49630 ID=Msa1344890;Name=Msa1344890
tig0006912 mRNA 49630 52687 49630 ID=Msa1344890-mRNA-1;Parent=Msa1344890;Name=Msa1344890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=219|1|1|1|1|1|3|267|342
tig0006912 exon 49630 50464 49630 ID=Msa1344890-mRNA-1:exon:4746;Parent=Msa1344890-mRNA-1
tig0006912 exon 51865 51993 51865 ID=Msa1344890-mRNA-1:exon:4745;Parent=Msa1344890-mRNA-1
tig0006912 exon 52137 52687 52137 ID=Msa1344890-mRNA-1:exon:4744;Parent=Msa1344890-mRNA-1
tig0006912 five_prime_UTR 52469 52687 52469 ID=Msa1344890-mRNA-1:five_prime_utr;Parent=Msa1344890-mRNA-1
tig0006912 CDS 52137 52468 52137 ID=Msa1344890-mRNA-1:cds;Parent=Msa1344890-mRNA-1
tig0006912 CDS 51865 51993 51865 ID=Msa1344890-mRNA-1:cds;Parent=Msa1344890-mRNA-1
tig0006912 CDS 49897 50464 49897 ID=Msa1344890-mRNA-1:cds;Parent=Msa1344890-mRNA-1
tig0006912 three_prime_UTR 49630 49896 49630 ID=Msa1344890-mRNA-1:three_prime_utr;Parent=Msa1344890-mRNA-1
Gene Sequence

>Msa1344890

ATGAAAGAGAACATTAAGTGTGAAGAAATTGGTCTCATTGGTGAACTAATGCAAGGTGAAGAGCTAGCAAAGAAGCTTTATGACCAAATTTTCTCTCCATCATCATCATCAACATCATCATCATCATCAACATCAACATCAACTTCATCACATGAAGTCTTAATTGACAAATTAATTTTGTCCATTGAGACTGCAATAACCATGGCAAAGGGTAATGAGGGAAAAATTAAGACAAACAATGTCAACATGATGAATTCTCATTGTTCAAATGGAAGTCCCAAAAGTGAGGTCCAAGACTCAAAGTTCAAGCACAAACATGTGTCCAAGAAAAGAAAAACCGTGCCTAAGTGGACAGAGCAAGTGAAGGTTTATTCTGGAACAGCAGCTGAAGGATCTGTTGAGGATGGTTATAGCTGGAGAAAGTATGGACAAAAGGATATTCTTGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACACATAGACATGCACAAGGTTGTCTAGCTACTAAGCAAGTGCAAAAATCAGATGAAGATGAAATGATATGTGAGATAACCTACAAAGGAAGACACACATGCACCCAATCTAACAAGAAACTCCCATCAAAAACAAAGTTGAGATTTGGACAAAATAAATCACAATCCAATCAAAATATTCAACCCCAAGAAGAGAAAATACAACCACCTCAAGAAAAAAAATTCTCTTTTGACAACAAGGAGGATATATTTCAATCATTCAATTTTTCCTCTCCATCAATAGGGTCTGAAAATGAAGATAACAACATATTTTTAGAGACCATGATTGAAAATGATTTCATGGAAAATGAGGATAACAATATATTCTCAGAATCGAACATTTTCTGCTTGTCACTATTGGATATGGACAGCACTGGACTAGGCCCAAGTGAGACTGAGATAATTTCAGGCCCAAATTCTATTGCCAATTCCCCAATGGATTTTGATCTCTATAATGACATAAATTTCGACATGGATGATTTCTCTATCAACACACAAGAACTTTGCTATTGA
Protein sequence

>Msa1344890

MKENIKCEEIGLIGELMQGEELAKKLYDQIFSPSSSSTSSSSSTSTSTSSHEVLIDKLILSIETAITMAKGNEGKIKTNNVNMMNSHCSNGSPKSEVQDSKFKHKHVSKKRKTVPKWTEQVKVYSGTAAEGSVEDGYSWRKYGQKDILGAKFPRGYYRCTHRHAQGCLATKQVQKSDEDEMICEITYKGRHTCTQSNKKLPSKTKLRFGQNKSQSNQNIQPQEEKIQPPQEKKFSFDNKEDIFQSFNFSSPSIGSENEDNNIFLETMIENDFMENEDNNIFSESNIFCLSLLDMDSTGLGPSETEIISGPNSIANSPMDFDLYNDINFDMDDFSINTQELCY*