AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1177330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177330 MtrunA17_Chr8g0347251 93.031 287 19 1 1 287 1 286 0.0 510
Msa1177330 MtrunA17_Chr7g0275531 45.918 294 111 9 1 276 1 264 1.84e-69 219
Msa1177330 MtrunA17_Chr3g0126391 42.500 240 107 8 12 235 7 231 1.20e-49 168
Msa1177330 MtrunA17_Chr8g0387981 35.254 295 151 7 1 274 1 276 2.57e-46 160
Msa1177330 MtrunA17_Chr7g0244971 33.158 190 100 5 12 196 15 182 2.31e-22 94.7
Msa1177330 MtrunA17_Chr7g0244981 33.871 186 104 4 12 196 14 181 3.43e-22 94.0
Msa1177330 MtrunA17_Chr3g0128671 55.224 67 30 0 130 196 120 186 6.53e-20 88.2
Msa1177330 MtrunA17_Chr8g0350621 31.319 182 104 4 15 196 10 170 6.30e-19 84.7
Msa1177330 MtrunA17_Chr7g0270051 40.972 144 66 6 92 230 3 132 1.51e-18 83.6
Msa1177330 MtrunA17_Chr5g0428351 47.222 72 38 0 130 201 176 247 9.04e-18 82.4
Msa1177330 MtrunA17_Chr8g0334541 44.444 90 43 1 111 200 84 166 2.74e-17 80.5
Msa1177330 MtrunA17_Chr2g0315361 43.158 95 45 2 106 199 124 210 4.65e-17 80.1
Msa1177330 MtrunA17_Chr2g0315381 34.783 138 78 3 111 244 125 254 7.16e-17 79.7
Msa1177330 MtrunA17_Chr7g0224801 56.667 60 23 1 136 195 92 148 1.75e-16 75.9
Msa1177330 MtrunA17_Chr2g0315371 26.633 199 118 5 15 199 19 203 7.04e-16 76.6
Msa1177330 MtrunA17_Chr4g0071521 41.935 93 51 2 107 199 216 305 9.45e-16 76.6
Msa1177330 MtrunA17_Chr1g0147881 43.023 86 46 2 109 194 235 317 1.90e-15 75.9
Msa1177330 MtrunA17_Chr8g0387501 43.836 73 39 1 130 202 122 192 2.30e-15 74.7
Msa1177330 MtrunA17_Chr2g0293481 32.941 170 92 7 79 236 209 368 1.36e-14 73.9
Msa1177330 MtrunA17_Chr4g0042831 51.724 58 25 1 137 194 145 199 1.83e-14 73.6
Msa1177330 MtrunA17_Chr4g0042831 45.763 59 29 1 136 194 277 332 4.87e-11 63.2
Msa1177330 MtrunA17_Chr7g0248691 28.079 203 124 5 97 288 114 305 2.15e-14 72.8
Msa1177330 MtrunA17_Chr7g0270191 33.803 142 72 5 112 250 119 241 2.77e-14 72.0
Msa1177330 MtrunA17_Chr5g0401821 44.186 86 45 2 109 194 172 254 3.07e-14 71.6
Msa1177330 MtrunA17_Chr8g0379461 30.198 202 113 11 112 302 45 229 3.61e-14 70.9
Msa1177330 MtrunA17_Chr8g0386241 47.458 59 28 1 136 194 102 157 3.75e-14 69.7
Msa1177330 MtrunA17_Chr7g0218081 40.426 94 44 5 136 227 227 310 6.81e-14 72.0
Msa1177330 MtrunA17_Chr7g0218081 44.068 59 30 1 136 194 409 464 6.06e-11 63.2
Msa1177330 MtrunA17_Chr2g0284321 31.624 117 73 2 111 227 9 118 6.97e-14 69.7
Msa1177330 MtrunA17_Chr7g0249311 35.537 121 60 4 79 194 125 232 7.01e-14 72.4
Msa1177330 MtrunA17_Chr5g0431811 47.619 63 33 0 137 199 672 734 1.60e-13 71.2
Msa1177330 MtrunA17_Chr8g0348311 38.000 100 60 1 96 195 114 211 1.84e-13 70.1
Msa1177330 MtrunA17_Chr3g0079691 37.008 127 70 5 74 194 211 333 2.13e-13 70.9
Msa1177330 MtrunA17_Chr1g0202461 40.476 84 43 2 111 194 240 316 2.34e-13 70.1
Msa1177330 MtrunA17_Chr7g0238921 31.646 158 83 5 55 194 28 178 2.53e-13 69.3
Msa1177330 MtrunA17_Chr4g0053281 43.678 87 45 3 109 194 238 321 2.60e-13 69.7
Msa1177330 MtrunA17_Chr5g0443131 49.153 59 27 1 136 194 156 211 3.88e-13 68.9
Msa1177330 MtrunA17_Chr1g0194481 39.130 92 48 2 104 195 130 213 4.61e-13 68.9
Msa1177330 MtrunA17_Chr5g0418781 50.847 59 26 1 136 194 123 178 6.90e-13 67.8
Msa1177330 MtrunA17_Chr5g0445311 48.571 70 30 3 127 194 188 253 1.12e-12 68.6
Msa1177330 MtrunA17_Chr3g0101131 49.231 65 29 2 130 194 236 296 1.22e-12 68.6
Msa1177330 MtrunA17_Chr3g0101131 38.462 91 46 3 111 194 382 469 7.94e-11 62.8
Msa1177330 MtrunA17_Chr4g0051881 49.153 59 27 1 136 194 177 232 1.30e-12 67.4
Msa1177330 MtrunA17_Chr7g0270831 38.095 105 57 3 100 204 180 276 1.65e-12 67.8
Msa1177330 MtrunA17_Chr5g0418191 42.045 88 42 3 136 223 150 228 1.74e-12 67.8
Msa1177330 MtrunA17_Chr5g0418191 44.068 59 30 1 136 194 319 374 3.25e-11 63.9
Msa1177330 MtrunA17_Chr8g0383351 42.466 73 39 1 136 208 159 228 1.97e-12 65.9
Msa1177330 MtrunA17_Chr2g0288871 35.036 137 72 5 78 204 236 365 2.31e-12 67.4
Msa1177330 MtrunA17_Chr7g0248721 40.964 83 40 3 112 194 121 194 3.02e-12 65.1
Msa1177330 MtrunA17_Chr2g0322391 52.542 59 26 1 136 194 348 404 3.06e-12 67.0
Msa1177330 MtrunA17_Chr3g0129361 42.466 73 39 1 136 208 143 212 3.85e-12 64.7
Msa1177330 MtrunA17_Chr7g0263531 50.877 57 24 2 138 194 190 242 4.87e-12 66.2
Msa1177330 MtrunA17_Chr4g0075201 51.667 60 27 1 136 195 266 323 6.34e-12 66.2
Msa1177330 MtrunA17_Chr7g0228941 44.595 74 38 2 121 194 37 107 6.58e-12 62.0
Msa1177330 MtrunA17_Chr8g0335811 45.588 68 31 2 136 200 153 217 8.55e-12 63.9
Msa1177330 MtrunA17_Chr2g0319961 49.123 57 27 1 138 194 81 135 1.01e-11 64.3
Msa1177330 MtrunA17_Chr4g0068541 45.763 59 29 1 136 194 207 262 1.01e-11 65.5
Msa1177330 MtrunA17_Chr4g0004911 36.364 110 51 4 108 210 152 249 1.12e-11 65.5
Msa1177330 MtrunA17_Chr5g0447701 46.154 65 32 1 130 194 245 306 1.45e-11 64.7
Msa1177330 MtrunA17_Chr7g0243891 47.222 72 32 3 137 206 216 283 1.52e-11 65.1
Msa1177330 MtrunA17_Chr1g0184691 47.368 57 28 1 138 194 294 348 1.54e-11 64.3
Msa1177330 MtrunA17_Chr3g0136961 47.458 59 29 1 136 194 137 193 2.08e-11 63.5
Msa1177330 MtrunA17_Chr3g0099641 43.836 73 34 2 136 208 250 315 2.09e-11 64.3
Msa1177330 MtrunA17_Chr3g0139021 48.387 62 30 1 138 199 315 374 2.58e-11 63.9
Msa1177330 MtrunA17_Chr7g0249301 35.000 100 57 3 128 223 53 148 2.72e-11 63.9
Msa1177330 MtrunA17_Chr3g0106491 45.000 60 30 1 136 195 364 420 2.96e-11 63.9
Msa1177330 MtrunA17_Chr3g0106491 34.146 123 65 4 137 259 198 304 5.40e-11 63.2
Msa1177330 MtrunA17_Chr1g0150281 50.847 59 27 1 136 194 139 195 3.19e-11 63.2
Msa1177330 MtrunA17_Chr1g0150801 41.667 60 32 1 136 195 101 157 7.30e-11 60.1
Msa1177330 MtrunA17_Chr5g0432161 48.276 58 26 2 137 194 244 297 7.31e-11 62.8
Msa1177330 MtrunA17_Chr4g0051181 46.479 71 31 2 134 204 240 303 7.62e-11 62.8
Msa1177330 MtrunA17_Chr2g0333851 35.955 89 52 2 125 210 154 240 9.23e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177330 AT4G23810.1 37.662 231 107 6 2 204 4 225 2.79e-40 144
Msa1177330 AT5G24110.1 37.297 185 100 4 94 275 72 243 2.15e-39 140
Msa1177330 AT2G46400.1 35.971 278 133 8 8 273 4 248 4.96e-39 139
Msa1177330 AT4G11070.1 38.843 242 110 6 3 223 2 226 6.66e-38 137
Msa1177330 AT4G11070.2 51.493 134 58 3 94 223 64 194 5.73e-37 134
Msa1177330 AT3G56400.1 30.583 206 119 3 6 207 5 190 2.38e-23 97.8
Msa1177330 AT2G40750.1 49.020 102 46 2 112 208 122 222 3.30e-23 98.6
Msa1177330 AT2G40740.1 53.968 63 29 0 137 199 173 235 8.75e-20 88.2
Msa1177330 AT2G40740.3 53.968 63 29 0 137 199 182 244 1.02e-19 87.8
Msa1177330 AT5G45260.1 34.682 173 93 4 51 219 1129 1285 1.11e-18 87.4
Msa1177330 AT4G24240.1 34.731 167 86 7 31 194 190 336 1.11e-15 77.0
Msa1177330 AT2G23320.1 35.897 117 64 3 78 194 190 295 1.79e-15 76.3
Msa1177330 AT2G30590.1 40.404 99 52 3 109 207 286 377 8.62e-15 74.7
Msa1177330 AT4G31550.1 40.594 101 57 2 99 199 209 306 1.74e-14 73.6
Msa1177330 AT2G24570.1 41.121 107 57 3 109 212 216 319 2.20e-14 73.2
Msa1177330 AT5G52830.1 43.529 85 41 2 111 195 144 221 2.64e-14 73.2
Msa1177330 AT4G23550.1 33.051 118 72 2 103 220 106 216 3.30e-14 72.4
Msa1177330 AT2G03340.1 46.667 75 31 3 132 206 245 310 4.18e-14 73.2
Msa1177330 AT1G66550.1 32.335 167 97 4 50 213 33 186 4.56e-14 71.2
Msa1177330 AT4G31550.2 44.318 88 46 2 112 199 221 305 5.87e-14 72.0
Msa1177330 AT5G28650.1 44.186 86 45 2 109 194 235 317 1.08e-13 71.2
Msa1177330 AT4G01250.1 48.438 64 31 1 131 194 122 183 1.29e-13 70.5
Msa1177330 AT1G66550.2 43.590 78 42 1 138 213 104 181 1.31e-13 69.7
Msa1177330 AT1G69310.4 36.893 103 56 3 97 199 112 205 1.35e-13 70.5
Msa1177330 AT1G69310.2 36.893 103 56 3 97 199 112 205 1.35e-13 70.5
Msa1177330 AT1G69310.1 36.893 103 56 3 97 199 112 205 1.35e-13 70.5
Msa1177330 AT5G49520.1 48.333 60 28 1 136 195 220 276 1.68e-13 70.9
Msa1177330 AT2G37260.3 36.634 101 60 2 94 194 227 323 1.88e-13 70.5
Msa1177330 AT2G37260.3 40.659 91 46 4 117 207 69 151 9.10e-12 65.5
Msa1177330 AT1G66600.1 39.726 73 44 0 124 196 90 162 1.94e-13 69.3
Msa1177330 AT2G37260.2 36.634 101 60 2 94 194 225 321 1.98e-13 70.5
Msa1177330 AT2G37260.2 40.659 91 46 4 117 207 67 149 9.71e-12 65.5
Msa1177330 AT3G58710.2 42.157 102 51 4 98 194 27 125 2.05e-13 69.7
Msa1177330 AT2G37260.1 36.275 102 61 2 93 194 306 403 2.23e-13 70.9
Msa1177330 AT2G37260.1 40.659 91 46 4 117 207 149 231 8.21e-12 65.9
Msa1177330 AT1G29280.1 50.877 57 26 1 138 194 75 129 2.68e-13 69.3
Msa1177330 AT2G34830.2 33.577 137 80 3 67 194 145 279 2.70e-13 70.5
Msa1177330 AT2G34830.1 33.577 137 80 3 67 194 136 270 2.92e-13 70.5
Msa1177330 AT3G58710.1 40.196 102 54 3 98 194 27 126 3.01e-13 69.3
Msa1177330 AT4G01720.1 39.823 113 58 4 94 204 195 299 3.82e-13 70.1
Msa1177330 AT1G13960.1 46.575 73 30 3 136 208 228 291 3.86e-13 70.1
Msa1177330 AT1G13960.1 44.068 59 30 1 136 194 408 463 4.20e-11 63.9
Msa1177330 AT5G13080.1 50.000 60 27 1 136 195 66 122 3.92e-13 66.2
Msa1177330 AT1G13960.2 46.575 73 30 3 136 208 75 138 5.32e-13 69.3
Msa1177330 AT1G13960.2 44.068 59 30 1 136 194 255 310 6.16e-11 63.2
Msa1177330 AT1G30650.1 40.449 89 48 2 106 194 189 272 5.97e-13 69.3
Msa1177330 AT3G04670.1 43.023 86 46 2 109 194 235 317 6.10e-13 68.9
Msa1177330 AT4G18170.1 42.045 88 47 2 108 194 142 226 8.28e-13 68.6
Msa1177330 AT1G29860.1 41.379 87 42 3 123 208 121 199 8.34e-13 68.2
Msa1177330 AT3G01970.1 50.000 60 27 1 136 195 64 120 1.05e-12 65.1
Msa1177330 AT1G66560.1 38.158 76 47 0 121 196 87 162 1.08e-12 67.4
Msa1177330 AT2G04880.2 47.458 59 28 1 136 194 282 337 1.33e-12 68.6
Msa1177330 AT2G04880.1 47.458 59 28 1 136 194 306 361 1.86e-12 68.2
Msa1177330 AT2G47260.1 40.476 84 47 1 136 219 173 253 2.63e-12 67.0
Msa1177330 AT3G01080.3 50.847 59 25 2 136 194 204 258 2.80e-12 67.0
Msa1177330 AT4G26440.1 42.045 88 41 4 136 223 177 254 3.29e-12 67.4
Msa1177330 AT4G26440.1 48.333 60 28 1 136 195 371 427 2.31e-11 65.1
Msa1177330 AT2G46130.1 47.458 59 28 1 136 194 29 84 3.43e-12 62.8
Msa1177330 AT4G26640.7 38.889 90 39 3 136 225 340 413 3.57e-12 67.4
Msa1177330 AT4G26640.7 49.153 59 26 2 136 194 170 224 1.51e-11 65.5
Msa1177330 AT4G26640.2 38.889 90 39 3 136 225 380 453 3.91e-12 67.4
Msa1177330 AT4G26640.2 49.153 59 26 2 136 194 210 264 1.63e-11 65.5
Msa1177330 AT4G26640.1 38.889 90 39 3 136 225 308 381 4.22e-12 67.0
Msa1177330 AT4G26640.1 49.153 59 26 2 136 194 138 192 1.95e-11 65.1
Msa1177330 AT2G25000.2 38.298 94 50 2 135 228 101 186 4.35e-12 65.1
Msa1177330 AT2G25000.4 38.298 94 50 2 135 228 101 186 4.35e-12 65.1
Msa1177330 AT2G25000.3 38.298 94 50 2 135 228 123 208 4.59e-12 65.5
Msa1177330 AT3G01080.2 50.847 59 25 2 136 194 204 258 5.01e-12 66.6
Msa1177330 AT4G26640.5 38.889 90 39 3 136 225 204 277 5.03e-12 66.6
Msa1177330 AT4G26640.5 49.153 59 26 2 136 194 34 88 2.15e-11 64.7
Msa1177330 AT4G26640.6 38.889 90 39 3 136 225 204 277 5.03e-12 66.6
Msa1177330 AT4G26640.6 49.153 59 26 2 136 194 34 88 2.15e-11 64.7
Msa1177330 AT4G26640.4 38.889 90 39 3 136 225 204 277 5.03e-12 66.6
Msa1177330 AT4G26640.4 49.153 59 26 2 136 194 34 88 2.15e-11 64.7
Msa1177330 AT4G26640.3 38.889 90 39 3 136 225 204 277 5.03e-12 66.6
Msa1177330 AT4G26640.3 49.153 59 26 2 136 194 34 88 2.15e-11 64.7
Msa1177330 AT4G04450.2 49.275 69 28 2 136 204 197 258 5.07e-12 66.6
Msa1177330 AT2G25000.1 38.298 94 50 2 135 228 144 229 5.84e-12 65.5
Msa1177330 AT5G46350.1 37.363 91 47 3 136 224 182 264 6.34e-12 65.9
Msa1177330 AT3G01080.1 50.847 59 25 2 136 194 166 220 6.39e-12 66.2
Msa1177330 AT1G62300.1 49.275 69 28 2 136 204 311 372 7.23e-12 66.2
Msa1177330 AT4G04450.1 49.275 69 28 2 136 204 291 352 8.60e-12 66.2
Msa1177330 AT5G56270.1 48.438 64 29 2 131 194 267 326 9.20e-12 66.2
Msa1177330 AT2G30250.1 52.632 57 24 1 138 194 329 382 1.00e-11 65.5
Msa1177330 AT4G39410.1 38.202 89 52 1 112 200 198 283 1.02e-11 65.1
Msa1177330 AT4G22070.4 44.048 84 42 2 111 194 274 352 1.22e-11 65.9
Msa1177330 AT4G22070.3 44.048 84 42 2 111 194 274 352 1.22e-11 65.9
Msa1177330 AT4G22070.2 44.048 84 42 2 111 194 274 352 1.22e-11 65.9
Msa1177330 AT4G22070.1 44.048 84 42 2 111 194 274 352 1.22e-11 65.9
Msa1177330 AT1G80590.1 28.387 155 89 3 138 291 86 219 1.25e-11 63.9
Msa1177330 AT2G44745.1 47.458 59 28 1 136 194 144 199 1.48e-11 63.5
Msa1177330 AT5G15130.2 49.180 61 29 1 135 195 183 241 5.56e-11 63.5
Msa1177330 AT5G15130.1 49.180 61 29 1 135 195 225 283 6.04e-11 63.5
Msa1177330 AT5G41570.1 36.145 83 45 2 112 194 78 152 6.27e-11 60.8
Msa1177330 AT1G68150.1 50.820 61 28 1 134 194 232 290 6.56e-11 63.2
Msa1177330 AT1G80840.1 38.298 94 48 3 125 215 131 217 6.89e-11 62.4
Msa1177330 AT4G12020.3 49.153 59 26 2 136 194 467 521 8.79e-11 63.5
Msa1177330 AT5G01900.1 45.763 59 32 0 138 196 111 169 8.90e-11 62.0
Msa1177330 AT4G12020.10 49.153 59 26 2 136 194 467 521 9.03e-11 63.5
Msa1177330 AT4G12020.6 49.153 59 26 2 136 194 467 521 9.38e-11 63.5
Msa1177330 AT4G12020.8 49.153 59 26 2 136 194 467 521 9.38e-11 63.5
Msa1177330 AT4G12020.4 49.153 59 26 2 136 194 467 521 9.46e-11 63.5
Msa1177330 AT2G38470.1 51.724 58 24 2 137 194 184 237 9.56e-11 62.8
Msa1177330 AT4G12020.2 49.153 59 26 2 136 194 467 521 9.72e-11 63.5
Msa1177330 AT4G12020.7 49.153 59 26 2 136 194 467 521 9.83e-11 63.5

Find 72 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGAATTGGCAATAGAATT+TGG 0.147921 8_1:-9708388 None:intergenic
GTAGATCAGGATTAGTAAAA+TGG 0.232043 8_1:+9708539 Msa1177330:three_prime_UTR
CTGCTTGTCACTATTGGATA+TGG 0.238656 8_1:+9708321 Msa1177330:CDS
TGAGTCTTGGACCTCACTTT+TGG 0.250506 8_1:-9706179 None:intergenic
ATGAGTGAGGAGGAGATATA+AGG 0.253287 8_1:-9705699 None:intergenic
ATCAAAATCCATTGGGGAAT+TGG 0.278398 8_1:-9708401 None:intergenic
AAAGGGATATTTGGTAAAAT+AGG 0.282474 8_1:-9705841 None:intergenic
GCATGTGTGTCTTCCTTTGT+AGG 0.282849 8_1:-9707986 None:intergenic
CATGATTGAAAATAATTTCA+TGG 0.317861 8_1:+9708227 Msa1177330:CDS
TAGCACAAGAAAGGGATATT+TGG 0.338760 8_1:-9705850 None:intergenic
GAGCAAGTGAAGGTTTATTC+TGG 0.340277 8_1:+9706397 Msa1177330:CDS
ATGGGAGTTTCTTGTTAGAT+TGG 0.341676 8_1:-9708011 None:intergenic
ACTTCCTTCCCACGTTAGTT+AGG 0.345213 8_1:+9708625 Msa1177330:three_prime_UTR
AACATTAAGTGTGAAGAAAT+TGG 0.349506 8_1:+9705902 Msa1177330:CDS
TGAGTGAGGAGGAGATATAA+GGG 0.350623 8_1:-9705698 None:intergenic
AGTGAGACTGAGATAATTTC+AGG 0.355518 8_1:+9708364 Msa1177330:exon
GGGAATTGGCAATAGAATTT+GGG 0.359861 8_1:-9708387 None:intergenic
TATGGACAAAAGGATATTCT+TGG 0.372931 8_1:+9706466 Msa1177330:CDS
GGTTATAGCTGGAGAAAGTA+TGG 0.376671 8_1:+9706448 Msa1177330:CDS
ATGAATTCTCATTGTTCAAA+TGG 0.381161 8_1:+9706151 Msa1177330:CDS
TGTGCTTGAACTTTGAGTCT+TGG 0.395293 8_1:-9706192 None:intergenic
AAAAGAAAACATATGATAGA+TGG 0.395888 8_1:-9708757 None:intergenic
TATAGAGATCAAAATCCATT+GGG 0.432731 8_1:-9708408 None:intergenic
TGGGAGTTTCTTGTTAGATT+GGG 0.445225 8_1:-9708010 None:intergenic
CTGGAGAAAGTATGGACAAA+AGG 0.452781 8_1:+9706456 Msa1177330:CDS
AAATAATTTCATGGAAAATG+AGG 0.454119 8_1:+9708236 Msa1177330:CDS
TCCCTCATTACCCTTTGCCA+TGG 0.480628 8_1:-9706101 None:intergenic
TGTGAAGAAATTGGTCTCAT+TGG 0.485916 8_1:+9705911 Msa1177330:CDS
AACCATGGCAAAGGGTAATG+AGG 0.498135 8_1:+9706099 Msa1177330:CDS
CATGGTTATTGCTGTCTCAA+TGG 0.498462 8_1:-9706083 None:intergenic
TAATTATGATAGCACAAGAA+AGG 0.499097 8_1:-9705859 None:intergenic
GAAATTATCTCAGTCTCACT+TGG 0.500825 8_1:-9708361 None:intergenic
ACAAACATGTGTCCAAGAAA+AGG 0.507877 8_1:+9706212 Msa1177330:CDS
GATGATGATGATGGTGATGA+TGG 0.508438 8_1:-9705989 None:intergenic
AAAGCTAATGAAATGCCAAA+TGG 0.511471 8_1:-9705785 None:intergenic
CTGTTGAGGATGGTTATAGC+TGG 0.522098 8_1:+9706437 Msa1177330:CDS
AATTATGATAGCACAAGAAA+GGG 0.523403 8_1:-9705858 None:intergenic
TTCAGACCCTATTGATGGAG+AGG 0.523902 8_1:-9708175 None:intergenic
TTCTTGGAGCTAAGTTTCCA+AGG 0.535081 8_1:+9706482 Msa1177330:CDS
TTCTATTGCCAATTCCCCAA+TGG 0.537538 8_1:+9708393 Msa1177330:three_prime_UTR
CTCTCCTAACTAACGTGGGA+AGG 0.552757 8_1:-9708629 None:intergenic
TTATAGAGATCAAAATCCAT+TGG 0.559577 8_1:-9708409 None:intergenic
TTCACTTGCTCTGTCCACTT+AGG 0.560248 8_1:-9706385 None:intergenic
TCTTTGTTCTGTTGTAACGT+AGG 0.571267 8_1:+9708731 Msa1177330:three_prime_UTR
GATATGGACAGCACTGGACT+AGG 0.571491 8_1:+9708337 Msa1177330:CDS
GTCAATTAAGACTTCATGTG+AGG 0.572810 8_1:-9706047 None:intergenic
GACAGCAATAACCATGGCAA+AGG 0.573478 8_1:+9706090 Msa1177330:CDS
ACAGCAATAACCATGGCAAA+GGG 0.573968 8_1:+9706091 Msa1177330:CDS
TATTCTGGAACAGCAGCTGA+AGG 0.574098 8_1:+9706412 Msa1177330:CDS
ACCATGGCAAAGGGTAATGA+GGG 0.583479 8_1:+9706100 Msa1177330:CDS
GAGTGAGGAGGAGATATAAG+GGG 0.596537 8_1:-9705697 None:intergenic
TTGCTCTGTCCACTTAGGCA+CGG 0.602998 8_1:-9706380 None:intergenic
GATGATGTTGATGATGATGA+TGG 0.603916 8_1:-9705998 None:intergenic
TTAGTAAAATGGCAAAGAGG+AGG 0.606211 8_1:+9708550 Msa1177330:three_prime_UTR
GCTGAAGGATCTGTTGAGGA+TGG 0.616817 8_1:+9706427 Msa1177330:CDS
CTATTGGATATGGACAGCAC+TGG 0.619978 8_1:+9708331 Msa1177330:CDS
AGCAGCTGAAGGATCTGTTG+AGG 0.621900 8_1:+9706423 Msa1177330:CDS
TGTTGAGGAAGTGATGAGTG+AGG 0.632535 8_1:-9705712 None:intergenic
AAAAGCTCTCCTAACTAACG+TGG 0.634073 8_1:-9708634 None:intergenic
AAATTTGAGTGGGATTGTTG+AGG 0.634323 8_1:-9705727 None:intergenic
AAATTATCTCAGTCTCACTT+GGG 0.640870 8_1:-9708360 None:intergenic
AAATGGAAGTCCCAAAAGTG+AGG 0.645726 8_1:+9706168 Msa1177330:CDS
ATATGTGAGATAACCTACAA+AGG 0.649008 8_1:+9707973 Msa1177330:CDS
TAATGACATAAATTTCGACA+TGG 0.657601 8_1:+9708429 Msa1177330:three_prime_UTR
GGATTAGTAAAATGGCAAAG+AGG 0.662048 8_1:+9708547 Msa1177330:three_prime_UTR
TAAGTGGACAGAGCAAGTGA+AGG 0.673359 8_1:+9706387 Msa1177330:CDS
TGAGGAAGTGATGAGTGAGG+AGG 0.682822 8_1:-9705709 None:intergenic
AAAGCTCTCCTAACTAACGT+GGG 0.695138 8_1:-9708633 None:intergenic
CTCATTGGTGAACTAATGCA+AGG 0.698867 8_1:+9705926 Msa1177330:CDS
CATTGAGACAGCAATAACCA+TGG 0.699108 8_1:+9706084 Msa1177330:CDS
ATAGAGATCAAAATCCATTG+GGG 0.717113 8_1:-9708407 None:intergenic
TGCACACATAGACATGCACA+AGG 0.724252 8_1:+9707904 Msa1177330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGGTTTTTATTTATTATAT+AGG + chr8_1:9706834-9706853 Msa1177330:intron 10.0%
!!! AATGATATTAAAATTTTTTG+TGG - chr8_1:9707760-9707779 None:intergenic 10.0%
!!! TTTTTTTTTGAAATTTGAGT+GGG - chr8_1:9705740-9705759 None:intergenic 15.0%
!!! TTTTTTTTTTGAAATTTGAG+TGG - chr8_1:9705741-9705760 None:intergenic 15.0%
!!! TCATAATTTTCATTATTCTT+TGG + chr8_1:9706337-9706356 Msa1177330:intron 15.0%
!!! AAGTTTTATTTGTTCTATTT+AGG + chr8_1:9706815-9706834 Msa1177330:intron 15.0%
!! AAAAATCCTATATCAAATAA+TGG + chr8_1:9706958-9706977 Msa1177330:intron 15.0%
!! AAAATCCTATATCAAATAAT+GGG + chr8_1:9706959-9706978 Msa1177330:intron 15.0%
!!! ATTAGAAAGATTTTTAATTC+TGG + chr8_1:9707032-9707051 Msa1177330:intron 15.0%
!! TATTTAATGCTAACTTAAAT+TGG - chr8_1:9707176-9707195 None:intergenic 15.0%
!! ATTGTCTGAATTTATATTAA+TGG - chr8_1:9707285-9707304 None:intergenic 15.0%
!!! TGAGAATATATTTTTTTTGA+GGG - chr8_1:9708287-9708306 None:intergenic 15.0%
!!! TTCAAGGTTCATTTTTTTAT+AGG + chr8_1:9706289-9706308 Msa1177330:intron 20.0%
!!! TTATAGGAATTTTTTTTCCA+AGG + chr8_1:9706305-9706324 Msa1177330:intron 20.0%
!!! GTAATTTTGTCAAATTTACT+AGG - chr8_1:9706575-9706594 None:intergenic 20.0%
!!! AAGAGTTTTGTTATTCATTA+TGG + chr8_1:9706598-9706617 Msa1177330:intron 20.0%
!!! AATTTAATTACTTTTGCTTG+AGG + chr8_1:9706691-9706710 Msa1177330:intron 20.0%
!!! ATATAGGAATTGTTTTTGAT+TGG + chr8_1:9706850-9706869 Msa1177330:intron 20.0%
!!! TTTAGTCATTATTGGTTAAT+TGG - chr8_1:9706918-9706937 None:intergenic 20.0%
!! AATATAAATTCAGACAATCA+TGG + chr8_1:9707287-9707306 Msa1177330:intron 20.0%
!! AATCTGACAATTTAAACTAA+TGG - chr8_1:9707315-9707334 None:intergenic 20.0%
!! ATAGAAACTTTAGATTTCAA+TGG + chr8_1:9707477-9707496 Msa1177330:intron 20.0%
!!! AAAGAGAATTTTTTTTCTTG+AGG - chr8_1:9708117-9708136 None:intergenic 20.0%
!!! CATGAAATTATTTTCAATCA+TGG - chr8_1:9708229-9708248 None:intergenic 20.0%
!! CATGATTGAAAATAATTTCA+TGG + chr8_1:9708227-9708246 Msa1177330:CDS 20.0%
!! AAATAATTTCATGGAAAATG+AGG + chr8_1:9708236-9708255 Msa1177330:CDS 20.0%
!!! CTGAGAATATATTTTTTTTG+AGG - chr8_1:9708288-9708307 None:intergenic 20.0%
!!! AGTTTCATTGTTCTTATTTT+TGG - chr8_1:9708608-9708627 None:intergenic 20.0%
!!! TATTGTATTTCACTATTTTG+AGG + chr8_1:9708706-9708725 Msa1177330:three_prime_UTR 20.0%
!! AAAAGAAAACATATGATAGA+TGG - chr8_1:9708760-9708779 None:intergenic 20.0%
!!! ATTTCTTTTAGTTCTCCATT+TGG + chr8_1:9705770-9705789 Msa1177330:five_prime_UTR 25.0%
! AAAGGGATATTTGGTAAAAT+AGG - chr8_1:9705844-9705863 None:intergenic 25.0%
! AATTATGATAGCACAAGAAA+GGG - chr8_1:9705861-9705880 None:intergenic 25.0%
! TAATTATGATAGCACAAGAA+AGG - chr8_1:9705862-9705881 None:intergenic 25.0%
! AACATTAAGTGTGAAGAAAT+TGG + chr8_1:9705902-9705921 Msa1177330:CDS 25.0%
! ATGAATTCTCATTGTTCAAA+TGG + chr8_1:9706151-9706170 Msa1177330:CDS 25.0%
!! TAATCCAATATACCTTTTCT+TGG - chr8_1:9706227-9706246 None:intergenic 25.0%
!! TTATTGTTTCCTTTTGAACT+TGG + chr8_1:9706257-9706276 Msa1177330:intron 25.0%
!!! CATTATTCTTTGGAATTTTG+TGG + chr8_1:9706347-9706366 Msa1177330:intron 25.0%
! GTAAAAAATGATTGTTACCT+TGG - chr8_1:9706502-9706521 None:intergenic 25.0%
! AGGAATTTAAAGATGCATTA+TGG - chr8_1:9706555-9706574 None:intergenic 25.0%
! TATATATTAATCTCCTGAGT+CGG - chr8_1:9706630-9706649 None:intergenic 25.0%
!! AAAAAAGTTATTTGCTGCAT+GGG - chr8_1:9706729-9706748 None:intergenic 25.0%
!! AAAAAAAGTTATTTGCTGCA+TGG - chr8_1:9706730-9706749 None:intergenic 25.0%
! ACCAATAATGACTAAAAAAG+AGG + chr8_1:9706922-9706941 Msa1177330:intron 25.0%
! CCAATAATGACTAAAAAAGA+GGG + chr8_1:9706923-9706942 Msa1177330:intron 25.0%
!! ATCTTTCTAATTTTGTCCTT+TGG - chr8_1:9707023-9707042 None:intergenic 25.0%
!!! GAAAGATTTTTAATTCTGGT+AGG + chr8_1:9707036-9707055 Msa1177330:intron 25.0%
! TAGTACTATTCACACAATTA+TGG + chr8_1:9707257-9707276 Msa1177330:intron 25.0%
!!! TCTTCTTTTTTAAGGAAATC+AGG - chr8_1:9707422-9707441 None:intergenic 25.0%
!!! GCATATCATCTTCTTTTTTA+AGG - chr8_1:9707430-9707449 None:intergenic 25.0%
! GTGAATCACAAATTTAATTC+AGG - chr8_1:9707452-9707471 None:intergenic 25.0%
! ATTATGGAACATATCAAGTA+GGG - chr8_1:9707583-9707602 None:intergenic 25.0%
! AATTATGGAACATATCAAGT+AGG - chr8_1:9707584-9707603 None:intergenic 25.0%
!!! GATGGATTATCTTCAAATTA+TGG - chr8_1:9707599-9707618 None:intergenic 25.0%
! TAATTTGAAGATAATCCATC+TGG + chr8_1:9707599-9707618 Msa1177330:intron 25.0%
! CAAAATAACCTTAGATTCTA+TGG - chr8_1:9707802-9707821 None:intergenic 25.0%
!!! ATCTCAACTTTGTTTTTGAT+GGG - chr8_1:9708032-9708051 None:intergenic 25.0%
!!! AATCTCAACTTTGTTTTTGA+TGG - chr8_1:9708033-9708052 None:intergenic 25.0%
! TCAAAAACAAAGTTGAGATT+TGG + chr8_1:9708033-9708052 Msa1177330:CDS 25.0%
!! AAAATTCTCTTTTGACAACA+AGG + chr8_1:9708125-9708144 Msa1177330:CDS 25.0%
! TATAGAGATCAAAATCCATT+GGG - chr8_1:9708411-9708430 None:intergenic 25.0%
! TTATAGAGATCAAAATCCAT+TGG - chr8_1:9708412-9708431 None:intergenic 25.0%
! TAATGACATAAATTTCGACA+TGG + chr8_1:9708429-9708448 Msa1177330:three_prime_UTR 25.0%
AAAGCTAATGAAATGCCAAA+TGG - chr8_1:9705788-9705807 None:intergenic 30.0%
TATGGACAAAAGGATATTCT+TGG + chr8_1:9706466-9706485 Msa1177330:CDS 30.0%
! AAAAAGTTATTTGCTGCATG+GGG - chr8_1:9706728-9706747 None:intergenic 30.0%
AAGTTATAAAGTTTGTCGCT+TGG + chr8_1:9706777-9706796 Msa1177330:intron 30.0%
!!! CAATGATATTTTAGTGAGTG+GGG - chr8_1:9706894-9706913 None:intergenic 30.0%
!!! CCAATGATATTTTAGTGAGT+GGG - chr8_1:9706895-9706914 None:intergenic 30.0%
!!! CCCTCTTTTTTAGTCATTAT+TGG - chr8_1:9706926-9706945 None:intergenic 30.0%
ATAATGACTAAAAAAGAGGG+AGG + chr8_1:9706926-9706945 Msa1177330:intron 30.0%
TAATGACTAAAAAAGAGGGA+GGG + chr8_1:9706927-9706946 Msa1177330:intron 30.0%
CCTTTCCCATTATTTGATAT+AGG - chr8_1:9706967-9706986 None:intergenic 30.0%
! CCTATATCAAATAATGGGAA+AGG + chr8_1:9706964-9706983 Msa1177330:intron 30.0%
AGACTATGAAAGTTATCCAA+AGG + chr8_1:9707004-9707023 Msa1177330:intron 30.0%
TACTAAAAGAGAAAGGACAT+TGG + chr8_1:9707097-9707116 Msa1177330:intron 30.0%
AACTTAAATTGGTGCATGAA+TGG - chr8_1:9707165-9707184 None:intergenic 30.0%
GTTGTCTATAACAGTGAATT+TGG - chr8_1:9707213-9707232 None:intergenic 30.0%
CTAACCTAAAGTCAAAATGT+AGG + chr8_1:9707370-9707389 Msa1177330:intron 30.0%
!!! ATGACCTACATTTTGACTTT+AGG - chr8_1:9707377-9707396 None:intergenic 30.0%
TCAATGGAGATTTCAAATAG+AGG + chr8_1:9707493-9707512 Msa1177330:intron 30.0%
TTGTTTGTGGTCGAATAATT+AGG + chr8_1:9707624-9707643 Msa1177330:intron 30.0%
ATATGTGAGATAACCTACAA+AGG + chr8_1:9707973-9707992 Msa1177330:CDS 30.0%
!!! TTGGGGTTGAATATTTTGAT+TGG - chr8_1:9708076-9708095 None:intergenic 30.0%
! TGGTTGTATTTTCTCTTCTT+GGG - chr8_1:9708094-9708113 None:intergenic 30.0%
!!! GAGAATTTTTTTTCTTGAGG+TGG - chr8_1:9708114-9708133 None:intergenic 30.0%
! AATTTTTCCTCTCCATCAAT+AGG + chr8_1:9708168-9708187 Msa1177330:CDS 30.0%
! ATTTTTCCTCTCCATCAATA+GGG + chr8_1:9708169-9708188 Msa1177330:CDS 30.0%
AAATTATCTCAGTCTCACTT+GGG - chr8_1:9708363-9708382 None:intergenic 30.0%
ATAGAGATCAAAATCCATTG+GGG - chr8_1:9708410-9708429 None:intergenic 30.0%
! GTAGATCAGGATTAGTAAAA+TGG + chr8_1:9708539-9708558 Msa1177330:three_prime_UTR 30.0%
AAATTTGAGTGGGATTGTTG+AGG - chr8_1:9705730-9705749 None:intergenic 35.0%
ACTAGCACATGAAGAAAAAG+TGG - chr8_1:9705812-9705831 None:intergenic 35.0%
TAGCACAAGAAAGGGATATT+TGG - chr8_1:9705853-9705872 None:intergenic 35.0%
! TGTGAAGAAATTGGTCTCAT+TGG + chr8_1:9705911-9705930 Msa1177330:CDS 35.0%
!! GTGATGATGGAGAGAAAAAT+TGG - chr8_1:9705979-9705998 None:intergenic 35.0%
!! GATGATGTTGATGATGATGA+TGG - chr8_1:9706001-9706020 None:intergenic 35.0%
GTCAATTAAGACTTCATGTG+AGG - chr8_1:9706050-9706069 None:intergenic 35.0%
ACAAACATGTGTCCAAGAAA+AGG + chr8_1:9706212-9706231 Msa1177330:CDS 35.0%
! GTGTCCAAGAAAAGGTATAT+TGG + chr8_1:9706220-9706239 Msa1177330:intron 35.0%
! TTGTTTCCTTTTGAACTTGG+TGG + chr8_1:9706260-9706279 Msa1177330:intron 35.0%
AATTCACCACCAAGTTCAAA+AGG - chr8_1:9706269-9706288 None:intergenic 35.0%
!!! AACTTGGTGGTGAATTTTCA+AGG + chr8_1:9706273-9706292 Msa1177330:intron 35.0%
AATTATGAGATCGTGAACCT+TGG - chr8_1:9706325-9706344 None:intergenic 35.0%
ATTATGGTATTATCCGACTC+AGG + chr8_1:9706614-9706633 Msa1177330:intron 35.0%
!!! TTGTTTTTGATTGGTGCAAG+TGG + chr8_1:9706859-9706878 Msa1177330:intron 35.0%
CCCACTCACTAAAATATCAT+TGG + chr8_1:9706892-9706911 Msa1177330:intron 35.0%
!!! GCCAATGATATTTTAGTGAG+TGG - chr8_1:9706896-9706915 None:intergenic 35.0%
! TTCTCTTTTAGTACAGTGCA+CGG - chr8_1:9707090-9707109 None:intergenic 35.0%
TGCACTGTACTAAAAGAGAA+AGG + chr8_1:9707090-9707109 Msa1177330:intron 35.0%
! AATCCATCTGGATTTGTTTG+TGG + chr8_1:9707611-9707630 Msa1177330:intron 35.0%
CTTAGATTCTATGGTCATGT+AGG - chr8_1:9707793-9707812 None:intergenic 35.0%
CTACATGACCATAGAATCTA+AGG + chr8_1:9707791-9707810 Msa1177330:intron 35.0%
! AATTGTGATTTGCAATGCAG+AGG + chr8_1:9707871-9707890 Msa1177330:intron 35.0%
! ATCTGATTTTTGCACTTGCT+TGG - chr8_1:9707941-9707960 None:intergenic 35.0%
TGGGAGTTTCTTGTTAGATT+GGG - chr8_1:9708013-9708032 None:intergenic 35.0%
ATGGGAGTTTCTTGTTAGAT+TGG - chr8_1:9708014-9708033 None:intergenic 35.0%
! GGTTGTATTTTCTCTTCTTG+GGG - chr8_1:9708093-9708112 None:intergenic 35.0%
! GTGGTTGTATTTTCTCTTCT+TGG - chr8_1:9708095-9708114 None:intergenic 35.0%
! ATTCTCTTTTGACAACAAGG+AGG + chr8_1:9708128-9708147 Msa1177330:CDS 35.0%
! TCATTTTCAGACCCTATTGA+TGG - chr8_1:9708183-9708202 None:intergenic 35.0%
! CATTTTCTGCTTGTCACTAT+TGG + chr8_1:9708315-9708334 Msa1177330:CDS 35.0%
GAAATTATCTCAGTCTCACT+TGG - chr8_1:9708364-9708383 None:intergenic 35.0%
AGTGAGACTGAGATAATTTC+AGG + chr8_1:9708364-9708383 Msa1177330:exon 35.0%
GGGAATTGGCAATAGAATTT+GGG - chr8_1:9708390-9708409 None:intergenic 35.0%
ATCAAAATCCATTGGGGAAT+TGG - chr8_1:9708404-9708423 None:intergenic 35.0%
! GCACTTAGAAATTTTGTGCA+TGG + chr8_1:9708499-9708518 Msa1177330:three_prime_UTR 35.0%
!! ACTTGTGAGTTTTGTAGATC+AGG + chr8_1:9708526-9708545 Msa1177330:three_prime_UTR 35.0%
! GGATTAGTAAAATGGCAAAG+AGG + chr8_1:9708547-9708566 Msa1177330:three_prime_UTR 35.0%
TTAGTAAAATGGCAAAGAGG+AGG + chr8_1:9708550-9708569 Msa1177330:three_prime_UTR 35.0%
TCTTTGTTCTGTTGTAACGT+AGG + chr8_1:9708731-9708750 Msa1177330:three_prime_UTR 35.0%
! GTTTTCTTTTGTTCAAGCAG+AGG + chr8_1:9708770-9708789 Msa1177330:three_prime_UTR 35.0%
TGAGTGAGGAGGAGATATAA+GGG - chr8_1:9705701-9705720 None:intergenic 40.0%
ATGAGTGAGGAGGAGATATA+AGG - chr8_1:9705702-9705721 None:intergenic 40.0%
CTCATTGGTGAACTAATGCA+AGG + chr8_1:9705926-9705945 Msa1177330:CDS 40.0%
!! GATGATGATGATGGTGATGA+TGG - chr8_1:9705992-9706011 None:intergenic 40.0%
CATGGTTATTGCTGTCTCAA+TGG - chr8_1:9706086-9706105 None:intergenic 40.0%
CATTGAGACAGCAATAACCA+TGG + chr8_1:9706084-9706103 Msa1177330:CDS 40.0%
ACAGCAATAACCATGGCAAA+GGG + chr8_1:9706091-9706110 Msa1177330:CDS 40.0%
AAATGGAAGTCCCAAAAGTG+AGG + chr8_1:9706168-9706187 Msa1177330:CDS 40.0%
TGTGCTTGAACTTTGAGTCT+TGG - chr8_1:9706195-9706214 None:intergenic 40.0%
GAGCAAGTGAAGGTTTATTC+TGG + chr8_1:9706397-9706416 Msa1177330:CDS 40.0%
GGTTATAGCTGGAGAAAGTA+TGG + chr8_1:9706448-9706467 Msa1177330:CDS 40.0%
! CTGGAGAAAGTATGGACAAA+AGG + chr8_1:9706456-9706475 Msa1177330:CDS 40.0%
TTCTTGGAGCTAAGTTTCCA+AGG + chr8_1:9706482-9706501 Msa1177330:CDS 40.0%
AGACTCACACACTATAAGTG+TGG + chr8_1:9707649-9707668 Msa1177330:intron 40.0%
TTCATGGACACAGAAATGCA+GGG - chr8_1:9707707-9707726 None:intergenic 40.0%
TTTCATGGACACAGAAATGC+AGG - chr8_1:9707708-9707727 None:intergenic 40.0%
!! CACTTCAGTTGGTAGTTTCA+TGG - chr8_1:9707723-9707742 None:intergenic 40.0%
AAACTACCAACTGAAGTGCA+GGG + chr8_1:9707725-9707744 Msa1177330:intron 40.0%
CTGCTTGTCACTATTGGATA+TGG + chr8_1:9708321-9708340 Msa1177330:CDS 40.0%
GGGGAATTGGCAATAGAATT+TGG - chr8_1:9708391-9708410 None:intergenic 40.0%
TTCTATTGCCAATTCCCCAA+TGG + chr8_1:9708393-9708412 Msa1177330:three_prime_UTR 40.0%
AAAGCTCTCCTAACTAACGT+GGG - chr8_1:9708636-9708655 None:intergenic 40.0%
AAAAGCTCTCCTAACTAACG+TGG - chr8_1:9708637-9708656 None:intergenic 40.0%
! CGTTAGTTAGGAGAGCTTTT+CGG + chr8_1:9708637-9708656 Msa1177330:three_prime_UTR 40.0%
! GTTAGTTAGGAGAGCTTTTC+GGG + chr8_1:9708638-9708657 Msa1177330:three_prime_UTR 40.0%
! TTAGTTAGGAGAGCTTTTCG+GGG + chr8_1:9708639-9708658 Msa1177330:three_prime_UTR 40.0%
GAGTGAGGAGGAGATATAAG+GGG - chr8_1:9705700-9705719 None:intergenic 45.0%
TGTTGAGGAAGTGATGAGTG+AGG - chr8_1:9705715-9705734 None:intergenic 45.0%
GACAGCAATAACCATGGCAA+AGG + chr8_1:9706090-9706109 Msa1177330:CDS 45.0%
AACCATGGCAAAGGGTAATG+AGG + chr8_1:9706099-9706118 Msa1177330:CDS 45.0%
ACCATGGCAAAGGGTAATGA+GGG + chr8_1:9706100-9706119 Msa1177330:CDS 45.0%
!! GAGTCTTGGACCTCACTTTT+GGG - chr8_1:9706181-9706200 None:intergenic 45.0%
! TGAGTCTTGGACCTCACTTT+TGG - chr8_1:9706182-9706201 None:intergenic 45.0%
TTCACTTGCTCTGTCCACTT+AGG - chr8_1:9706388-9706407 None:intergenic 45.0%
TAAGTGGACAGAGCAAGTGA+AGG + chr8_1:9706387-9706406 Msa1177330:CDS 45.0%
!! TATTCTGGAACAGCAGCTGA+AGG + chr8_1:9706412-9706431 Msa1177330:CDS 45.0%
CTGTTGAGGATGGTTATAGC+TGG + chr8_1:9706437-9706456 Msa1177330:CDS 45.0%
TTGATTGGTGCAAGTGGCTT+TGG + chr8_1:9706865-9706884 Msa1177330:intron 45.0%
TGATTGGTGCAAGTGGCTTT+GGG + chr8_1:9706866-9706885 Msa1177330:intron 45.0%
CGACCACAAACAAATCCAGA+TGG - chr8_1:9707617-9707636 None:intergenic 45.0%
GTGTGGAGAAGTGAGAAATC+CGG + chr8_1:9707666-9707685 Msa1177330:intron 45.0%
TGTGGAGAAGTGAGAAATCC+GGG + chr8_1:9707667-9707686 Msa1177330:intron 45.0%
TCATGGACACAGAAATGCAG+GGG - chr8_1:9707706-9707725 None:intergenic 45.0%
GAAACTACCAACTGAAGTGC+AGG + chr8_1:9707724-9707743 Msa1177330:intron 45.0%
TGCACACATAGACATGCACA+AGG + chr8_1:9707904-9707923 Msa1177330:CDS 45.0%
GCATGTGTGTCTTCCTTTGT+AGG - chr8_1:9707989-9708008 None:intergenic 45.0%
TTCAGACCCTATTGATGGAG+AGG - chr8_1:9708178-9708197 None:intergenic 45.0%
CTATTGGATATGGACAGCAC+TGG + chr8_1:9708331-9708350 Msa1177330:CDS 45.0%
ACTTCCTTCCCACGTTAGTT+AGG + chr8_1:9708625-9708644 Msa1177330:three_prime_UTR 45.0%
TGAGGAAGTGATGAGTGAGG+AGG - chr8_1:9705712-9705731 None:intergenic 50.0%
TCCCTCATTACCCTTTGCCA+TGG - chr8_1:9706104-9706123 None:intergenic 50.0%
GCAGAAAAACCGTGCCTAAG+TGG + chr8_1:9706371-9706390 Msa1177330:intron 50.0%
TTGCTCTGTCCACTTAGGCA+CGG - chr8_1:9706383-9706402 None:intergenic 50.0%
AGCAGCTGAAGGATCTGTTG+AGG + chr8_1:9706423-9706442 Msa1177330:CDS 50.0%
GCTGAAGGATCTGTTGAGGA+TGG + chr8_1:9706427-9706446 Msa1177330:CDS 50.0%
GTGGAGAAGTGAGAAATCCG+GGG + chr8_1:9707668-9707687 Msa1177330:intron 50.0%
TGATAGCCCTGCACTTCAGT+TGG - chr8_1:9707734-9707753 None:intergenic 50.0%
! GATATGGACAGCACTGGACT+AGG + chr8_1:9708337-9708356 Msa1177330:CDS 50.0%
CTCTCCTAACTAACGTGGGA+AGG - chr8_1:9708632-9708651 None:intergenic 50.0%
!! GAGAGCTTTTCGGGGTAGTT+AGG + chr8_1:9708647-9708666 Msa1177330:three_prime_UTR 50.0%
AGGGGTCGGAATTCAAACCC+CGG - chr8_1:9707688-9707707 None:intergenic 55.0%
GGACACAGAAATGCAGGGGT+CGG - chr8_1:9707702-9707721 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 9705668 9708820 9705668 ID=Msa1177330;Name=Msa1177330
chr8_1 mRNA 9705668 9708820 9705668 ID=Msa1177330-mRNA-1;Parent=Msa1177330;Name=Msa1177330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=225|1|1|1|0.5|0.66|3|452|315
chr8_1 exon 9705668 9706233 9705668 ID=Msa1177330-mRNA-1:exon:3356;Parent=Msa1177330-mRNA-1
chr8_1 exon 9706375 9706503 9706375 ID=Msa1177330-mRNA-1:exon:3357;Parent=Msa1177330-mRNA-1
chr8_1 exon 9707891 9708820 9707891 ID=Msa1177330-mRNA-1:exon:3358;Parent=Msa1177330-mRNA-1
chr8_1 five_prime_UTR 9705668 9705892 9705668 ID=Msa1177330-mRNA-1:five_prime_utr;Parent=Msa1177330-mRNA-1
chr8_1 CDS 9705893 9706233 9705893 ID=Msa1177330-mRNA-1:cds;Parent=Msa1177330-mRNA-1
chr8_1 CDS 9706375 9706503 9706375 ID=Msa1177330-mRNA-1:cds;Parent=Msa1177330-mRNA-1
chr8_1 CDS 9707891 9708368 9707891 ID=Msa1177330-mRNA-1:cds;Parent=Msa1177330-mRNA-1
chr8_1 three_prime_UTR 9708369 9708820 9708369 ID=Msa1177330-mRNA-1:three_prime_utr;Parent=Msa1177330-mRNA-1
Gene Sequence

>Msa1177330

ATGAAAGAGAACATTAAGTGTGAAGAAATTGGTCTCATTGGTGAACTAATGCAAGGTGAAGAGCTAGCAAAGAAGCTTTATGACCAATTTTTCTCTCCATCATCACCATCATCATCATCAACATCATCATCATCATCAACATCAACATCAACTTCCTCACATGAAGTCTTAATTGACAAATTAATTTTGTCCATTGAGACAGCAATAACCATGGCAAAGGGTAATGAGGGAAAAATTAAGACAAACAATGTCAACATGATGAATTCTCATTGTTCAAATGGAAGTCCCAAAAGTGAGGTCCAAGACTCAAAGTTCAAGCACAAACATGTGTCCAAGAAAAGAAAAACCGTGCCTAAGTGGACAGAGCAAGTGAAGGTTTATTCTGGAACAGCAGCTGAAGGATCTGTTGAGGATGGTTATAGCTGGAGAAAGTATGGACAAAAGGATATTCTTGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACACATAGACATGCACAAGGTTGTCTAGCTACCAAGCAAGTGCAAAAATCAGATGAAGATGAAATGATATGTGAGATAACCTACAAAGGAAGACACACATGCACCCAATCTAACAAGAAACTCCCATCAAAAACAAAGTTGAGATTTGGACAAAATAAATCACAATCCAATCAAAATATTCAACCCCAAGAAGAGAAAATACAACCACCTCAAGAAAAAAAATTCTCTTTTGACAACAAGGAGGATATATTTCAATCATTCAATTTTTCCTCTCCATCAATAGGGTCTGAAAATGAAGATAACAACATATTTTTAGAGACCATGATTGAAAATAATTTCATGGAAAATGAGGATAACAATATATTCTCAGAATCATTCCCTCAAAAAAAATATATTCTCAGAATCAAACATTTTCTGCTTGTCACTATTGGATATGGACAGCACTGGACTAGGCCCAAGTGA
Protein sequence

>Msa1177330

MKENIKCEEIGLIGELMQGEELAKKLYDQFFSPSSPSSSSTSSSSSTSTSTSSHEVLIDKLILSIETAITMAKGNEGKIKTNNVNMMNSHCSNGSPKSEVQDSKFKHKHVSKKRKTVPKWTEQVKVYSGTAAEGSVEDGYSWRKYGQKDILGAKFPRGYYRCTHRHAQGCLATKQVQKSDEDEMICEITYKGRHTCTQSNKKLPSKTKLRFGQNKSQSNQNIQPQEEKIQPPQEKKFSFDNKEDIFQSFNFSSPSIGSENEDNNIFLETMIENNFMENEDNNIFSESFPQKKYILRIKHFLLVTIGYGQHWTRPK*