Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899400 | RHN52877.1 | 91.379 | 58 | 5 | 0 | 1 | 58 | 1 | 58 | 8.32e-27 | 104 |
| Msa0899400 | RHN52877.1 | 96.825 | 63 | 2 | 0 | 64 | 126 | 1 | 63 | 2.19e-34 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899400 | A0A396HPT2 | 91.379 | 58 | 5 | 0 | 1 | 58 | 1 | 58 | 3.97e-27 | 104 |
| Msa0899400 | A0A396HPT2 | 96.825 | 63 | 2 | 0 | 64 | 126 | 1 | 63 | 1.05e-34 | 124 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071480 | Msa0899400 | 0.807489 | 4.929825e-50 | -8.615850e-47 |
| Msa0748660 | Msa0899400 | 0.813851 | 2.076145e-51 | -8.615850e-47 |
| Msa0437070 | Msa0899400 | 0.813061 | 3.096356e-51 | -8.615850e-47 |
| Msa0463490 | Msa0899400 | 0.831362 | 1.743148e-55 | -8.615850e-47 |
| Msa0472710 | Msa0899400 | 0.805869 | 1.084004e-49 | -8.615850e-47 |
| Msa0259440 | Msa0899400 | 0.813224 | 2.851878e-51 | -8.615850e-47 |
| Msa0259580 | Msa0899400 | 0.814633 | 1.394931e-51 | -8.615850e-47 |
| Msa0358110 | Msa0899400 | 0.808153 | 3.561353e-50 | -8.615850e-47 |
| Msa0899400 | Msa0927440 | 0.887564 | 1.276982e-72 | -8.615850e-47 |
| Msa0899400 | Msa0999160 | 0.835153 | 1.980028e-56 | -8.615850e-47 |
| Msa0899400 | Msa1123720 | 0.803700 | 3.076167e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899400 | MtrunA17_Chr6g0485321 | 96.825 | 63 | 2 | 0 | 64 | 126 | 1 | 63 | 2.02e-38 | 124 |
| Msa0899400 | MtrunA17_Chr6g0485321 | 91.379 | 58 | 5 | 0 | 1 | 58 | 1 | 58 | 7.65e-31 | 104 |
| Msa0899400 | MtrunA17_Chr6g0485341 | 92.063 | 63 | 5 | 0 | 64 | 126 | 1 | 63 | 5.32e-36 | 117 |
| Msa0899400 | MtrunA17_Chr6g0485341 | 91.379 | 58 | 5 | 0 | 1 | 58 | 1 | 58 | 1.87e-32 | 108 |
| Msa0899400 | MtrunA17_Chr6g0485351 | 75.000 | 64 | 16 | 0 | 63 | 126 | 1 | 64 | 3.07e-29 | 100 |
| Msa0899400 | MtrunA17_Chr6g0485351 | 72.414 | 58 | 16 | 0 | 1 | 58 | 2 | 59 | 8.96e-24 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899400 | AT3G61640.1 | 46.875 | 64 | 31 | 2 | 64 | 126 | 1 | 62 | 2.01e-11 | 56.2 |
| Msa0899400 | AT2G46330.1 | 50.909 | 55 | 25 | 1 | 72 | 126 | 10 | 62 | 2.41e-11 | 55.8 |
| Msa0899400 | AT5G53250.1 | 44.444 | 72 | 30 | 2 | 55 | 126 | 2 | 63 | 4.70e-11 | 54.7 |
Find 19 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCATGGCAATTTCTCATA+TGG | 0.265189 | 6_1:-94435019 | Msa0899400:CDS |
| TACTAGTGATGCTCAGATTC+TGG | 0.273706 | 6_1:-94432074 | Msa0899400:CDS |
| TTCTCTTATGTTGGTGGCGC+TGG | 0.343746 | 6_1:-94432035 | Msa0899400:CDS |
| TTCATGGCAATTTCTCATAT+GGG | 0.419811 | 6_1:-94435018 | Msa0899400:CDS |
| TGCTTATTCTCTTATGTTGG+TGG | 0.427507 | 6_1:-94432041 | Msa0899400:CDS |
| AGACTCTGAGCATCACTTGT+AGG | 0.433902 | 6_1:+94434958 | None:intergenic |
| GTTCTTGGCAATTTCTCACA+TGG | 0.459379 | 6_1:-94432137 | Msa0899400:CDS |
| AAGAACAAAATAGTAAGAAG+TGG | 0.472674 | 6_1:+94432154 | None:intergenic |
| AATTGCTTATTCTCTTATGT+TGG | 0.478265 | 6_1:-94432044 | Msa0899400:CDS |
| ATGAACAAAATAGTGAGAAG+TGG | 0.487628 | 6_1:+94435036 | None:intergenic |
| AGAATCTGAGCATCACTAGT+AGG | 0.516211 | 6_1:+94432076 | None:intergenic |
| TTCTTGGCAATTTCTCACAT+GGG | 0.525548 | 6_1:-94432136 | Msa0899400:CDS |
| TCACTAGTAGGAGTAGGTGC+TGG | 0.561134 | 6_1:+94432088 | None:intergenic |
| TGAACAAAATAGTGAGAAGT+GGG | 0.570433 | 6_1:+94435037 | None:intergenic |
| TCACTTGTAGGAGTAGGTGC+TGG | 0.575206 | 6_1:+94434970 | None:intergenic |
| AGAACAAAATAGTAAGAAGT+GGG | 0.592067 | 6_1:+94432155 | None:intergenic |
| GATGCTCAGATTCTGGATCA+AGG | 0.592593 | 6_1:-94432067 | Msa0899400:CDS |
| TGAGCATCACTTGTAGGAGT+AGG | 0.595784 | 6_1:+94434964 | None:intergenic |
| TGAGCATCACTAGTAGGAGT+AGG | 0.610713 | 6_1:+94432082 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTATATGTAATTATTAT+TGG | - | chr6_1:94432252-94432271 | Msa0899400:intron | 10.0% |
| !!! | GTAAAGTTTTTTTTTTTTTT+TGG | + | chr6_1:94432367-94432386 | None:intergenic | 10.0% |
| !! | TAAAAAAAAAAACATGAAAT+TGG | + | chr6_1:94433498-94433517 | None:intergenic | 10.0% |
| !! | TTACATATACAAAAATATTC+TGG | + | chr6_1:94432245-94432264 | None:intergenic | 15.0% |
| !! | AAGAAGAAAAAAATTGTAAT+AGG | - | chr6_1:94432478-94432497 | Msa0899400:intron | 15.0% |
| !! | TATTGATGAAAAAATCTTTA+AGG | - | chr6_1:94433254-94433273 | Msa0899400:intron | 15.0% |
| !!! | TCATGTTTTTTTTTTTATAG+TGG | - | chr6_1:94433501-94433520 | Msa0899400:intron | 15.0% |
| !!! | GTAAATTGTTTCTTATAATA+AGG | + | chr6_1:94434290-94434309 | None:intergenic | 15.0% |
| !! | GAAAAATATATCTTGAATTT+AGG | - | chr6_1:94434341-94434360 | Msa0899400:intron | 15.0% |
| !!! | TTTTTCTCTTCTAAAAATTT+AGG | + | chr6_1:94434485-94434504 | None:intergenic | 15.0% |
| !!! | AATTGCTTATTTTCTTATGT+TGG | - | chr6_1:94432149-94432168 | Msa0899400:CDS | 20.0% |
| !!! | TATTATTTTTTCTTCAGATG+TGG | + | chr6_1:94432526-94432545 | None:intergenic | 20.0% |
| !! | CTGAAGAAAAAATAATAGTA+AGG | - | chr6_1:94432529-94432548 | Msa0899400:intron | 20.0% |
| !! | AGAAAAAATAATAGTAAGGT+CGG | - | chr6_1:94432533-94432552 | Msa0899400:intron | 20.0% |
| !! | ATTAAAAAATGAACTCCTTT+AGG | - | chr6_1:94432584-94432603 | Msa0899400:intron | 20.0% |
| !!! | AATGATTGGCATTTTTTTTT+AGG | - | chr6_1:94432866-94432885 | Msa0899400:intron | 20.0% |
| !! | TGATTACAATCAAGTTTAAT+AGG | + | chr6_1:94433443-94433462 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTTTTATAGTGGT+CGG | - | chr6_1:94433505-94433524 | Msa0899400:intron | 20.0% |
| !!! | TTTTTTTTTTTATAGTGGTC+GGG | - | chr6_1:94433506-94433525 | Msa0899400:intron | 20.0% |
| !!! | AACATACTTTTGTGAAAATT+TGG | + | chr6_1:94433935-94433954 | None:intergenic | 20.0% |
| !!! | AAATTTTCACAAAAGTATGT+TGG | - | chr6_1:94433934-94433953 | Msa0899400:intron | 20.0% |
| !!! | GTTTAATTTCTAGAATTATG+TGG | - | chr6_1:94434072-94434091 | Msa0899400:intron | 20.0% |
| !! | TGCAAAATTAATATTTCCTT+CGG | - | chr6_1:94434263-94434282 | Msa0899400:intron | 20.0% |
| !! | AAATATATCTTGAATTTAGG+AGG | - | chr6_1:94434344-94434363 | Msa0899400:intron | 20.0% |
| !! | TCTAGAAAATTATTGCATAT+AGG | + | chr6_1:94434546-94434565 | None:intergenic | 20.0% |
| !!! | ATTGTCTTCATTATTTTCTT+GGG | + | chr6_1:94434885-94434904 | None:intergenic | 20.0% |
| !! | TGTTATTTGTCCTATGATTA+TGG | - | chr6_1:94432685-94432704 | Msa0899400:intron | 25.0% |
| ! | GTTATTTGTCCTATGATTAT+GGG | - | chr6_1:94432686-94432705 | Msa0899400:intron | 25.0% |
| ! | GAGATAATTGCTTTAATAAC+TGG | + | chr6_1:94432985-94433004 | None:intergenic | 25.0% |
| !! | GAAAAAATCTTTAAGGAACA+AGG | - | chr6_1:94433261-94433280 | Msa0899400:intron | 25.0% |
| ! | ACATAAATGCAAATACAACT+TGG | - | chr6_1:94433328-94433347 | Msa0899400:intron | 25.0% |
| ! | TAAACTTGATTGTAATCAAG+TGG | - | chr6_1:94433445-94433464 | Msa0899400:intron | 25.0% |
| !!! | TTTTTTTTTTATAGTGGTCG+GGG | - | chr6_1:94433507-94433526 | Msa0899400:intron | 25.0% |
| ! | GACAATACATAAAATATGCA+AGG | + | chr6_1:94433546-94433565 | None:intergenic | 25.0% |
| !!! | CGACACTTATTTTAAAGTTT+TGG | + | chr6_1:94433633-94433652 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGAATTGTAGAA+TGG | - | chr6_1:94433997-94434016 | Msa0899400:intron | 25.0% |
| !!! | TTGGTAATGAATTGTAGAAT+GGG | - | chr6_1:94433998-94434017 | Msa0899400:intron | 25.0% |
| !!! | TAATTTCTAGAATTATGTGG+TGG | - | chr6_1:94434075-94434094 | Msa0899400:intron | 25.0% |
| ! | ATAGGAGTAATTTCTGTTTA+AGG | + | chr6_1:94434528-94434547 | None:intergenic | 25.0% |
| ! | TATTTATAGGTAGAGAAAGA+AGG | + | chr6_1:94434735-94434754 | None:intergenic | 25.0% |
| ! | AAGGGAAAAGTTGTATTTAT+AGG | + | chr6_1:94434748-94434767 | None:intergenic | 25.0% |
| ! | ATTTGAATAACTCAACTATG+AGG | + | chr6_1:94434836-94434855 | None:intergenic | 25.0% |
| !! | CATTGTCTTCATTATTTTCT+TGG | + | chr6_1:94434886-94434905 | None:intergenic | 25.0% |
| ! | AGAACAAAATAGTAAGAAGT+GGG | + | chr6_1:94434923-94434942 | None:intergenic | 25.0% |
| ! | AAGAACAAAATAGTAAGAAG+TGG | + | chr6_1:94434924-94434943 | None:intergenic | 25.0% |
| !! | ACTTCTTACTATTTTGTTCT+TGG | - | chr6_1:94434923-94434942 | Msa0899400:CDS | 25.0% |
| ! | AATTGCTTATTCTCTTATGT+TGG | - | chr6_1:94435031-94435050 | Msa0899400:CDS | 25.0% |
| TGAACAAAATAGTGAGAAGT+GGG | + | chr6_1:94432041-94432060 | None:intergenic | 30.0% | |
| ATGAACAAAATAGTGAGAAG+TGG | + | chr6_1:94432042-94432061 | None:intergenic | 30.0% | |
| ! | ACTTCTCACTATTTTGTTCA+TGG | - | chr6_1:94432041-94432060 | Msa0899400:CDS | 30.0% |
| TTCATGGCAATTTCTCATAT+GGG | - | chr6_1:94432057-94432076 | Msa0899400:CDS | 30.0% | |
| !! | TGCTTATTTTCTTATGTTGG+TGG | - | chr6_1:94432152-94432171 | Msa0899400:CDS | 30.0% |
| !! | ATAGGTTATTTTGTTCTGAG+TGG | - | chr6_1:94432496-94432515 | Msa0899400:intron | 30.0% |
| !!! | ATTTTTTCTTCAGATGTGGT+AGG | + | chr6_1:94432522-94432541 | None:intergenic | 30.0% |
| CATCATGTTTAATAGTGATG+TGG | - | chr6_1:94432782-94432801 | Msa0899400:intron | 30.0% | |
| AGAAGTCGTATGAAAATGAT+TGG | - | chr6_1:94432852-94432871 | Msa0899400:intron | 30.0% | |
| !!! | TTTTTTTAGGTGTGTTGAGT+TGG | - | chr6_1:94432879-94432898 | Msa0899400:intron | 30.0% |
| ACGAAAATAATGAGTTCTTG+AGG | + | chr6_1:94433007-94433026 | None:intergenic | 30.0% | |
| ! | TTATTTTCGTCATGACTTTG+TGG | - | chr6_1:94433017-94433036 | Msa0899400:intron | 30.0% |
| TTTAAGGAACAAGGTTGTTA+AGG | - | chr6_1:94433270-94433289 | Msa0899400:intron | 30.0% | |
| ! | AATAAGAGGCTTGGTAATTT+GGG | - | chr6_1:94433404-94433423 | Msa0899400:intron | 30.0% |
| TACATAAAATATGCAAGGTC+CGG | + | chr6_1:94433541-94433560 | None:intergenic | 30.0% | |
| !! | GCTTGTTCATTTTTAAGCTA+AGG | - | chr6_1:94433672-94433691 | Msa0899400:intron | 30.0% |
| AAATCACCTTGAAAAGAATG+AGG | + | chr6_1:94433901-94433920 | None:intergenic | 30.0% | |
| AAGTTAATGTTGTTGAGTCT+TGG | - | chr6_1:94433960-94433979 | Msa0899400:intron | 30.0% | |
| TAATGAATTGTAGAATGGGT+AGG | - | chr6_1:94434002-94434021 | Msa0899400:intron | 30.0% | |
| !!! | AGGATCCTTTTTTTGTATCT+TGG | - | chr6_1:94434022-94434041 | Msa0899400:intron | 30.0% |
| GAAGACCAAGATACAAAAAA+AGG | + | chr6_1:94434030-94434049 | None:intergenic | 30.0% | |
| TCTAGAAATTAAACCTTCGT+GGG | + | chr6_1:94434066-94434085 | None:intergenic | 30.0% | |
| ! | TTCTAGAAATTAAACCTTCG+TGG | + | chr6_1:94434067-94434086 | None:intergenic | 30.0% |
| TGTATGAAAAGTAGACTGAT+TGG | - | chr6_1:94434100-94434119 | Msa0899400:intron | 30.0% | |
| GTATGAAAAGTAGACTGATT+GGG | - | chr6_1:94434101-94434120 | Msa0899400:intron | 30.0% | |
| TTTCTTATAATAAGGACCGA+AGG | + | chr6_1:94434282-94434301 | None:intergenic | 30.0% | |
| ! | TATGTTTCTGACTTTAGATC+AGG | - | chr6_1:94434445-94434464 | Msa0899400:intron | 30.0% |
| GAAAGAAGGAAAGTAAAATG+TGG | + | chr6_1:94434721-94434740 | None:intergenic | 30.0% | |
| ! | TTGATTTGAGCTTGAATGAA+GGG | + | chr6_1:94434766-94434785 | None:intergenic | 30.0% |
| !! | TTTGATTTGAGCTTGAATGA+AGG | + | chr6_1:94434767-94434786 | None:intergenic | 30.0% |
| AAAAAGAAGCTAGAAGATGA+TGG | + | chr6_1:94434862-94434881 | None:intergenic | 30.0% | |
| GTTCATGGCAATTTCTCATA+TGG | - | chr6_1:94432056-94432075 | Msa0899400:CDS | 35.0% | |
| !! | GAACTTTTGAAAGCACAAGA+AGG | + | chr6_1:94432315-94432334 | None:intergenic | 35.0% |
| !! | CATTCTAGAGTTATGTGATG+TGG | + | chr6_1:94432559-94432578 | None:intergenic | 35.0% |
| ! | CACATCACATAACTCTAGAA+TGG | - | chr6_1:94432557-94432576 | Msa0899400:intron | 35.0% |
| AAATGAACTCCTTTAGGTCT+TGG | - | chr6_1:94432590-94432609 | Msa0899400:intron | 35.0% | |
| TTGTCCTATGATTATGGGAA+CGG | - | chr6_1:94432691-94432710 | Msa0899400:intron | 35.0% | |
| GGTCAATTATATCGTTTAGC+AGG | + | chr6_1:94432724-94432743 | None:intergenic | 35.0% | |
| TGCATTTGGAAGAGAATGAA+TGG | - | chr6_1:94433040-94433059 | Msa0899400:intron | 35.0% | |
| AATAAAGAGCGAAGAGAACT+AGG | - | chr6_1:94433150-94433169 | Msa0899400:intron | 35.0% | |
| TGCAAATACAACTTGGTACA+AGG | - | chr6_1:94433335-94433354 | Msa0899400:intron | 35.0% | |
| GCAAATACAACTTGGTACAA+GGG | - | chr6_1:94433336-94433355 | Msa0899400:intron | 35.0% | |
| ! | CAATAAGAGGCTTGGTAATT+TGG | - | chr6_1:94433403-94433422 | Msa0899400:intron | 35.0% |
| ACATAAAATATGCAAGGTCC+GGG | + | chr6_1:94433540-94433559 | None:intergenic | 35.0% | |
| TGTGCATTTACAATTTGCGA+AGG | - | chr6_1:94433820-94433839 | Msa0899400:intron | 35.0% | |
| !!! | TGCGAAGGACACTTTTTTAT+TGG | - | chr6_1:94433835-94433854 | Msa0899400:intron | 35.0% |
| !!! | GCGAAGGACACTTTTTTATT+GGG | - | chr6_1:94433836-94433855 | Msa0899400:intron | 35.0% |
| ! | TTGTATCTTGGTCTTCCTAT+TGG | - | chr6_1:94434034-94434053 | Msa0899400:intron | 35.0% |
| !! | TGGTGTTTGGTTTGATGTTA+TGG | - | chr6_1:94434153-94434172 | Msa0899400:intron | 35.0% |
| TGATGTTATGGTAGAGTCTA+TGG | - | chr6_1:94434165-94434184 | Msa0899400:intron | 35.0% | |
| ! | AACAAAGAGCTATTTCGACA+CGG | + | chr6_1:94434678-94434697 | None:intergenic | 35.0% |
| TTCTTGGCAATTTCTCACAT+GGG | - | chr6_1:94434939-94434958 | Msa0899400:CDS | 35.0% | |
| TGCTTATTCTCTTATGTTGG+TGG | - | chr6_1:94435034-94435053 | Msa0899400:CDS | 35.0% | |
| !! | CTTGGATTGGTGATGAAGAA+CGG | - | chr6_1:94432657-94432676 | Msa0899400:intron | 40.0% |
| !! | TTGGATTGGTGATGAAGAAC+GGG | - | chr6_1:94432658-94432677 | Msa0899400:intron | 40.0% |
| TTGACCAAAATACACATGCG+TGG | - | chr6_1:94432738-94432757 | Msa0899400:intron | 40.0% | |
| ! | TCTTCCACGCATGTGTATTT+TGG | + | chr6_1:94432745-94432764 | None:intergenic | 40.0% |
| TGATGTGGAAGACAAACTCA+AGG | - | chr6_1:94432797-94432816 | Msa0899400:intron | 40.0% | |
| TCATGTAACGATCACTACAC+TGG | + | chr6_1:94432826-94432845 | None:intergenic | 40.0% | |
| GAATCAATGTGAGAAGTAGC+AGG | - | chr6_1:94432901-94432920 | Msa0899400:intron | 40.0% | |
| AGGTCTTTCGCATATTATCC+AGG | - | chr6_1:94432921-94432940 | Msa0899400:intron | 40.0% | |
| GCATATTATCCAGGAGAACT+TGG | - | chr6_1:94432930-94432949 | Msa0899400:intron | 40.0% | |
| GAGAACTTGGAAACTAAGGA+TGG | - | chr6_1:94432943-94432962 | Msa0899400:intron | 40.0% | |
| TCATGACTTTGTGGTGCATT+TGG | - | chr6_1:94433026-94433045 | Msa0899400:intron | 40.0% | |
| TCAACGCATCCCAATTCAAA+TGG | - | chr6_1:94433090-94433109 | Msa0899400:intron | 40.0% | |
| CATCTCACGCCATTTGAATT+GGG | + | chr6_1:94433102-94433121 | None:intergenic | 40.0% | |
| ACATCTCACGCCATTTGAAT+TGG | + | chr6_1:94433103-94433122 | None:intergenic | 40.0% | |
| CTCTTCGCTCTTTATTGTCA+AGG | + | chr6_1:94433146-94433165 | None:intergenic | 40.0% | |
| ACGATAACAAGTAAAGACCG+AGG | - | chr6_1:94433189-94433208 | Msa0899400:intron | 40.0% | |
| GTGTGTAGATGTGTCTTAGA+GGG | - | chr6_1:94433292-94433311 | Msa0899400:intron | 40.0% | |
| TGTGTAGATGTGTCTTAGAG+GGG | - | chr6_1:94433293-94433312 | Msa0899400:intron | 40.0% | |
| GGGTTAAAGGAAGCAATAAG+AGG | - | chr6_1:94433390-94433409 | Msa0899400:intron | 40.0% | |
| AAAGGAAGCAATAAGAGGCT+TGG | - | chr6_1:94433395-94433414 | Msa0899400:intron | 40.0% | |
| CATAAAATATGCAAGGTCCG+GGG | + | chr6_1:94433539-94433558 | None:intergenic | 40.0% | |
| ! | AGCAGTCCTCATTCTTTTCA+AGG | - | chr6_1:94433892-94433911 | Msa0899400:intron | 40.0% |
| TGTTGAGTCTTGGATGTTAG+AGG | - | chr6_1:94433970-94433989 | Msa0899400:intron | 40.0% | |
| GTTGAGTCTTGGATGTTAGA+GGG | - | chr6_1:94433971-94433990 | Msa0899400:intron | 40.0% | |
| TTGGATGTTAGAGGGATCTT+TGG | - | chr6_1:94433979-94433998 | Msa0899400:intron | 40.0% | |
| ! | TATCTTGGTCTTCCTATTGG+TGG | - | chr6_1:94434037-94434056 | Msa0899400:intron | 40.0% |
| TGAAAAGTAGACTGATTGGG+TGG | - | chr6_1:94434104-94434123 | Msa0899400:intron | 40.0% | |
| ! | ATTCCGCTAATGTCGTTTGA+AGG | - | chr6_1:94434379-94434398 | Msa0899400:intron | 40.0% |
| TCTCCTTCAAACGACATTAG+CGG | + | chr6_1:94434385-94434404 | None:intergenic | 40.0% | |
| GTGGCGTCTAAGAAATTTCA+AGG | + | chr6_1:94434702-94434721 | None:intergenic | 40.0% | |
| GTTCTTGGCAATTTCTCACA+TGG | - | chr6_1:94434938-94434957 | Msa0899400:CDS | 40.0% | |
| AGAATCTGAGCATCACTAGT+AGG | + | chr6_1:94435002-94435021 | None:intergenic | 40.0% | |
| TACTAGTGATGCTCAGATTC+TGG | - | chr6_1:94435001-94435020 | Msa0899400:CDS | 40.0% | |
| TGAGCATCACTTGTAGGAGT+AGG | + | chr6_1:94432114-94432133 | None:intergenic | 45.0% | |
| AGACTCTGAGCATCACTTGT+AGG | + | chr6_1:94432120-94432139 | None:intergenic | 45.0% | |
| !!! | TTTTCTTATGTTGGTGGCGC+TGG | - | chr6_1:94432158-94432177 | Msa0899400:CDS | 45.0% |
| GAACTCCTTTAGGTCTTGGA+TGG | - | chr6_1:94432594-94432613 | Msa0899400:intron | 45.0% | |
| AAACGCCATCCAAGACCTAA+AGG | + | chr6_1:94432602-94432621 | None:intergenic | 45.0% | |
| TTAGGTCTTGGATGGCGTTT+AGG | - | chr6_1:94432602-94432621 | Msa0899400:intron | 45.0% | |
| TAGGTCTTGGATGGCGTTTA+GGG | - | chr6_1:94432603-94432622 | Msa0899400:intron | 45.0% | |
| CGTTCTTCATCACCAATCCA+AGG | + | chr6_1:94432659-94432678 | None:intergenic | 45.0% | |
| TCCTATGATTATGGGAACGG+AGG | - | chr6_1:94432694-94432713 | Msa0899400:intron | 45.0% | |
| TCCTCCGTTCCCATAATCAT+AGG | + | chr6_1:94432698-94432717 | None:intergenic | 45.0% | |
| CCTTAGTTTCCAAGTTCTCC+TGG | + | chr6_1:94432942-94432961 | None:intergenic | 45.0% | |
| CCAGGAGAACTTGGAAACTA+AGG | - | chr6_1:94432939-94432958 | Msa0899400:intron | 45.0% | |
| TATCCCTTTGCCGAACTTCT+TGG | + | chr6_1:94433222-94433241 | None:intergenic | 45.0% | |
| AAGAAGTTCGGCAAAGGGAT+AGG | - | chr6_1:94433221-94433240 | Msa0899400:intron | 45.0% | |
| GGTGTGTAGATGTGTCTTAG+AGG | - | chr6_1:94433291-94433310 | Msa0899400:intron | 45.0% | |
| ACCTCATGAGACTGAAGCAA+TGG | - | chr6_1:94433368-94433387 | Msa0899400:intron | 45.0% | |
| CCTCATGAGACTGAAGCAAT+GGG | - | chr6_1:94433369-94433388 | Msa0899400:intron | 45.0% | |
| CTCATGAGACTGAAGCAATG+GGG | - | chr6_1:94433370-94433389 | Msa0899400:intron | 45.0% | |
| GACTGAAGCAATGGGGTTAA+AGG | - | chr6_1:94433377-94433396 | Msa0899400:intron | 45.0% | |
| ACTGATTGGGTGGACATCTT+TGG | - | chr6_1:94434114-94434133 | Msa0899400:intron | 45.0% | |
| !! | TTGGTGTTGTGGCACATCTT+TGG | - | chr6_1:94434133-94434152 | Msa0899400:intron | 45.0% |
| !! | TGTGGCACATCTTTGGTGTT+TGG | - | chr6_1:94434140-94434159 | Msa0899400:intron | 45.0% |
| TAGAGTCTATGGCAGATCTC+TGG | - | chr6_1:94434176-94434195 | Msa0899400:intron | 45.0% | |
| TATGGCAGATCTCTGGTGTT+TGG | - | chr6_1:94434183-94434202 | Msa0899400:intron | 45.0% | |
| ATCTCTGGTGTTTGGTCCAA+CGG | - | chr6_1:94434191-94434210 | Msa0899400:intron | 45.0% | |
| ATCAATAGAACCCACACCGT+TGG | + | chr6_1:94434210-94434229 | None:intergenic | 45.0% | |
| ! | AAGAGCTATTTCGACACGGT+TGG | + | chr6_1:94434674-94434693 | None:intergenic | 45.0% |
| TGAGCATCACTAGTAGGAGT+AGG | + | chr6_1:94434996-94435015 | None:intergenic | 45.0% | |
| GATGCTCAGATTCTGGATCA+AGG | - | chr6_1:94435008-94435027 | Msa0899400:CDS | 45.0% | |
| TCACTTGTAGGAGTAGGTGC+TGG | + | chr6_1:94432108-94432127 | None:intergenic | 50.0% | |
| TCCAAACGCGTGAGATTGCT+AGG | - | chr6_1:94432394-94432413 | Msa0899400:intron | 50.0% | |
| ACCTAGCAATCTCACGCGTT+TGG | + | chr6_1:94432398-94432417 | None:intergenic | 50.0% | |
| AGGTCTTGGATGGCGTTTAG+GGG | - | chr6_1:94432604-94432623 | Msa0899400:intron | 50.0% | |
| TTGGATGGCGTTTAGGGGAT+AGG | - | chr6_1:94432609-94432628 | Msa0899400:intron | 50.0% | |
| TAGGGGATAGGTCGAAGACA+AGG | - | chr6_1:94432621-94432640 | Msa0899400:intron | 50.0% | |
| AGGGGATAGGTCGAAGACAA+GGG | - | chr6_1:94432622-94432641 | Msa0899400:intron | 50.0% | |
| CAAGTAAAGACCGAGGCAGA+TGG | - | chr6_1:94433196-94433215 | Msa0899400:intron | 50.0% | |
| AACTTCTTGGCCATCTGCCT+CGG | + | chr6_1:94433209-94433228 | None:intergenic | 50.0% | |
| AGGCAGATGGCCAAGAAGTT+CGG | - | chr6_1:94433209-94433228 | Msa0899400:intron | 50.0% | |
| ATGGCCAAGAAGTTCGGCAA+AGG | - | chr6_1:94433215-94433234 | Msa0899400:intron | 50.0% | |
| TGGCCAAGAAGTTCGGCAAA+GGG | - | chr6_1:94433216-94433235 | Msa0899400:intron | 50.0% | |
| GCTTCAGTCTCATGAGGTTG+TGG | + | chr6_1:94433366-94433385 | None:intergenic | 50.0% | |
| CCCATTGCTTCAGTCTCATG+AGG | + | chr6_1:94433372-94433391 | None:intergenic | 50.0% | |
| TGAGCTTAGCTCAGCTGGTT+GGG | + | chr6_1:94433568-94433587 | None:intergenic | 50.0% | |
| ATTCGTGAGCTTAGCTCAGC+TGG | + | chr6_1:94433573-94433592 | None:intergenic | 50.0% | |
| !! | GGTGGACATCTTTGGTGTTG+TGG | - | chr6_1:94434122-94434141 | Msa0899400:intron | 50.0% |
| !! | TTGGTGCGACTCGTTGACTT+GGG | + | chr6_1:94434655-94434674 | None:intergenic | 50.0% |
| TCACTAGTAGGAGTAGGTGC+TGG | + | chr6_1:94434990-94435009 | None:intergenic | 50.0% | |
| !! | TTCTCTTATGTTGGTGGCGC+TGG | - | chr6_1:94435040-94435059 | Msa0899400:CDS | 50.0% |
| ATAGGTCGAAGACAAGGGCG+TGG | - | chr6_1:94432627-94432646 | Msa0899400:intron | 55.0% | |
| GCGTGGCATGATCCTTGGAT+TGG | - | chr6_1:94432644-94432663 | Msa0899400:intron | 55.0% | |
| GTGAGCTTAGCTCAGCTGGT+TGG | + | chr6_1:94433569-94433588 | None:intergenic | 55.0% | |
| CTTCGTGGGTCTCCACCAAT+AGG | + | chr6_1:94434052-94434071 | None:intergenic | 55.0% | |
| CTATTGGTGGAGACCCACGA+AGG | - | chr6_1:94434050-94434069 | Msa0899400:intron | 55.0% | |
| TGGTGTTTGGTCCAACGGTG+TGG | - | chr6_1:94434196-94434215 | Msa0899400:intron | 55.0% | |
| GGTGTTTGGTCCAACGGTGT+GGG | - | chr6_1:94434197-94434216 | Msa0899400:intron | 55.0% | |
| ! | GTTGGTGCGACTCGTTGACT+TGG | + | chr6_1:94434656-94434675 | None:intergenic | 55.0% |
| ! | CAAGGGCGTGGCATGATCCT+TGG | - | chr6_1:94432639-94432658 | Msa0899400:intron | 60.0% |
| AGTGGTCGGGGTTTGAACCC+CGG | - | chr6_1:94433519-94433538 | Msa0899400:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 94432012 | 94435085 | 94432012 | ID=Msa0899400;Name=Msa0899400 |
| chr6_1 | mRNA | 94432012 | 94435085 | 94432012 | ID=Msa0899400-mRNA-1;Parent=Msa0899400;Name=Msa0899400-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|1|0|0|2|0|126 |
| chr6_1 | exon | 94434918 | 94435085 | 94434918 | ID=Msa0899400-mRNA-1:exon:16135;Parent=Msa0899400-mRNA-1 |
| chr6_1 | exon | 94432012 | 94432224 | 94432012 | ID=Msa0899400-mRNA-1:exon:16134;Parent=Msa0899400-mRNA-1 |
| chr6_1 | CDS | 94434918 | 94435085 | 94434918 | ID=Msa0899400-mRNA-1:cds;Parent=Msa0899400-mRNA-1 |
| chr6_1 | CDS | 94432012 | 94432224 | 94432012 | ID=Msa0899400-mRNA-1:cds;Parent=Msa0899400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
