Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999160 | RHN52877.1 | 91.379 | 58 | 5 | 0 | 1 | 58 | 1 | 58 | 4.71e-27 | 105 |
| Msa0999160 | RHN52877.1 | 98.413 | 63 | 1 | 0 | 64 | 126 | 1 | 63 | 7.58e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999160 | A0A396HPT2 | 91.379 | 58 | 5 | 0 | 1 | 58 | 1 | 58 | 2.25e-27 | 105 |
| Msa0999160 | A0A396HPT2 | 98.413 | 63 | 1 | 0 | 64 | 126 | 1 | 63 | 3.62e-35 | 125 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004480 | Msa0999160 | 0.820713 | 5.930781e-53 | -8.615850e-47 |
| Msa0119440 | Msa0999160 | 0.814216 | 1.725147e-51 | -8.615850e-47 |
| Msa0748660 | Msa0999160 | 0.804362 | 2.240190e-49 | -8.615850e-47 |
| Msa0133100 | Msa0999160 | 0.813565 | 2.399577e-51 | -8.615850e-47 |
| Msa0162690 | Msa0999160 | 0.830730 | 2.490905e-55 | -8.615850e-47 |
| Msa0412260 | Msa0999160 | 0.821506 | 3.894233e-53 | -8.615850e-47 |
| Msa0418400 | Msa0999160 | 0.809559 | 1.782153e-50 | -8.615850e-47 |
| Msa0437070 | Msa0999160 | 0.831974 | 1.231061e-55 | -8.615850e-47 |
| Msa0456770 | Msa0999160 | 0.823724 | 1.187365e-53 | -8.615850e-47 |
| Msa0999160 | Msa1109670 | 0.812943 | 3.286934e-51 | -8.615850e-47 |
| Msa0999160 | Msa1123720 | 0.818082 | 2.359182e-52 | -8.615850e-47 |
| Msa0999160 | Msa1389760 | 0.828957 | 6.734448e-55 | -8.615850e-47 |
| Msa0259440 | Msa0999160 | 0.800535 | 1.377139e-48 | -8.615850e-47 |
| Msa0259580 | Msa0999160 | 0.801203 | 1.006030e-48 | -8.615850e-47 |
| Msa0860250 | Msa0999160 | 0.819313 | 1.240365e-52 | -8.615850e-47 |
| Msa0899400 | Msa0999160 | 0.835153 | 1.980028e-56 | -8.615850e-47 |
| Msa0968050 | Msa0999160 | 0.806042 | 9.968787e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999160 | MtrunA17_Chr6g0485321 | 98.413 | 63 | 1 | 0 | 64 | 126 | 1 | 63 | 6.97e-39 | 125 |
| Msa0999160 | MtrunA17_Chr6g0485321 | 91.379 | 58 | 5 | 0 | 1 | 58 | 1 | 58 | 4.33e-31 | 105 |
| Msa0999160 | MtrunA17_Chr6g0485341 | 93.651 | 63 | 4 | 0 | 64 | 126 | 1 | 63 | 1.84e-36 | 119 |
| Msa0999160 | MtrunA17_Chr6g0485341 | 91.379 | 58 | 5 | 0 | 1 | 58 | 1 | 58 | 1.08e-32 | 109 |
| Msa0999160 | MtrunA17_Chr6g0485351 | 76.562 | 64 | 15 | 0 | 63 | 126 | 1 | 64 | 1.04e-29 | 102 |
| Msa0999160 | MtrunA17_Chr6g0485351 | 72.414 | 58 | 16 | 0 | 1 | 58 | 2 | 59 | 4.08e-24 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999160 | AT3G61640.1 | 46.875 | 64 | 31 | 2 | 64 | 126 | 1 | 62 | 1.59e-11 | 56.2 |
| Msa0999160 | AT2G46330.1 | 50.909 | 55 | 25 | 1 | 72 | 126 | 10 | 62 | 1.78e-11 | 56.2 |
Find 18 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAAGTGATGCTCAGATTT+TGG | 0.158444 | 6_4:-80917567 | Msa0999160:CDS |
| GTTCATGGCAATTTCTCATA+TGG | 0.265189 | 6_4:-80920406 | Msa0999160:CDS |
| TTCTCTTATGTTGGTGGCGC+TGG | 0.325870 | 6_4:-80917528 | Msa0999160:CDS |
| AAAATCTGAGCATCACTTGT+AGG | 0.405205 | 6_4:+80917569 | None:intergenic |
| TTCATGGCAATTTCTCATAT+GGG | 0.419811 | 6_4:-80920405 | Msa0999160:CDS |
| TGCTTATTCTCTTATGTTGG+TGG | 0.427507 | 6_4:-80917534 | Msa0999160:CDS |
| AGACTCTGAGCATCACTTGT+AGG | 0.433902 | 6_4:+80920345 | None:intergenic |
| GTTCATGGCAATTTCTCACA+TGG | 0.474706 | 6_4:-80917630 | Msa0999160:CDS |
| AATTGCTTATTCTCTTATGT+TGG | 0.478265 | 6_4:-80917537 | Msa0999160:CDS |
| ATGAACAAAATAGTGAGAAG+TGG | 0.487628 | 6_4:+80917647 | None:intergenic |
| ATGAACAAAATAGTGAGAAG+TGG | 0.487628 | 6_4:+80920423 | None:intergenic |
| TGAACAAAATAGTGAGAAGT+GGG | 0.570433 | 6_4:+80917648 | None:intergenic |
| TGAACAAAATAGTGAGAAGT+GGG | 0.570433 | 6_4:+80920424 | None:intergenic |
| TCACTTGTAGGAGTAGGTGC+TGG | 0.575206 | 6_4:+80917581 | None:intergenic |
| TCACTTGTAGGAGTAGGTGC+TGG | 0.575206 | 6_4:+80920357 | None:intergenic |
| TGAGCATCACTTGTAGGAGT+AGG | 0.579336 | 6_4:+80917575 | None:intergenic |
| TTCATGGCAATTTCTCACAT+GGG | 0.580435 | 6_4:-80917629 | Msa0999160:CDS |
| TGAGCATCACTTGTAGGAGT+AGG | 0.595784 | 6_4:+80920351 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACATATACAAAAATATTC+TGG | + | chr6_4:80917738-80917757 | None:intergenic | 15.0% |
| !! | AAGAAGAAAAAAATTGTAAT+AGG | - | chr6_4:80917934-80917953 | Msa0999160:intron | 15.0% |
| !! | CTGAAGAAAAAATAATAATA+AGG | - | chr6_4:80917985-80918004 | Msa0999160:intron | 15.0% |
| !! | AGAAAAAATAATAATAAGGT+CGG | - | chr6_4:80917989-80918008 | Msa0999160:intron | 15.0% |
| !!! | AAATGATTGACATTTTTTTT+AGG | - | chr6_4:80918321-80918340 | Msa0999160:intron | 15.0% |
| !! | TATTGATGAAAAAATCTTTA+AGG | - | chr6_4:80918709-80918728 | Msa0999160:intron | 15.0% |
| !!! | GTAAATTGTTTCTTATAATA+AGG | + | chr6_4:80919672-80919691 | None:intergenic | 15.0% |
| !! | GAAAAATATATCTTGAATTT+AGG | - | chr6_4:80919723-80919742 | Msa0999160:intron | 15.0% |
| !!! | TTTTTCTCTTCTAAAAATTT+AGG | + | chr6_4:80919867-80919886 | None:intergenic | 15.0% |
| !! | TAAGAAAATCTTAAAGTTAA+AGG | + | chr6_4:80920197-80920216 | None:intergenic | 15.0% |
| !!! | AATTGCTTATTTTCTTATGT+TGG | - | chr6_4:80917642-80917661 | Msa0999160:CDS | 20.0% |
| !!! | TATTATTTTTTCTTCAGATG+TGG | + | chr6_4:80917982-80918001 | None:intergenic | 20.0% |
| !! | ATTAAAAAATGAACTCCTTT+AGG | - | chr6_4:80918040-80918059 | Msa0999160:intron | 20.0% |
| !! | TGATTACAATCAAGTTTAAT+AGG | + | chr6_4:80918898-80918917 | None:intergenic | 20.0% |
| !!! | AAATTTTCACAAAAGTATGT+TGG | - | chr6_4:80919311-80919330 | Msa0999160:intron | 20.0% |
| !!! | GTTTAATTTCTAGAAATATG+TGG | - | chr6_4:80919449-80919468 | Msa0999160:intron | 20.0% |
| !! | AAATATATCTTGAATTTAGG+AGG | - | chr6_4:80919726-80919745 | Msa0999160:intron | 20.0% |
| !!! | AAAAATTTAGGATTAGAGAA+TGG | + | chr6_4:80919855-80919874 | None:intergenic | 20.0% |
| !! | TCTAGAAAATTATTGCATAT+AGG | + | chr6_4:80919928-80919947 | None:intergenic | 20.0% |
| !! | ATTTGAATAACTCAAATATG+AGG | + | chr6_4:80920223-80920242 | None:intergenic | 20.0% |
| !!! | ATTGTCTTCATAATTTTCTT+GGG | + | chr6_4:80920272-80920291 | None:intergenic | 20.0% |
| !! | TGTTATTTGTCCTATGATTA+TGG | - | chr6_4:80918141-80918160 | Msa0999160:intron | 25.0% |
| ! | GTTATTTGTCCTATGATTAT+GGG | - | chr6_4:80918142-80918161 | Msa0999160:intron | 25.0% |
| ! | GAGATAATTGCTTTAATAAC+TGG | + | chr6_4:80918440-80918459 | None:intergenic | 25.0% |
| ! | ACGAAAATAATGAGTTATTG+AGG | + | chr6_4:80918462-80918481 | None:intergenic | 25.0% |
| !! | GAAAAAATCTTTAAGGAACA+AGG | - | chr6_4:80918716-80918735 | Msa0999160:intron | 25.0% |
| ! | ACATAAATGCAAATACAACT+TGG | - | chr6_4:80918783-80918802 | Msa0999160:intron | 25.0% |
| ! | TAAACTTGATTGTAATCAAG+TGG | - | chr6_4:80918900-80918919 | Msa0999160:intron | 25.0% |
| !! | AATTGATTCAAACATGGAAT+TGG | + | chr6_4:80918953-80918972 | None:intergenic | 25.0% |
| !! | ATCAAGAATTGATTCAAACA+TGG | + | chr6_4:80918959-80918978 | None:intergenic | 25.0% |
| !!! | CGACACTTATTTTAAAGTTT+TGG | + | chr6_4:80919008-80919027 | None:intergenic | 25.0% |
| !!! | TTTGGTAATGAATTGTAGAA+TGG | - | chr6_4:80919374-80919393 | Msa0999160:intron | 25.0% |
| !!! | TTGGTAATGAATTGTAGAAT+GGG | - | chr6_4:80919375-80919394 | Msa0999160:intron | 25.0% |
| !! | TAATTTCTAGAAATATGTGG+TGG | - | chr6_4:80919452-80919471 | Msa0999160:intron | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | + | chr6_4:80919667-80919686 | None:intergenic | 25.0% |
| ! | ATAGGAGTAATTTCTGTTTA+AGG | + | chr6_4:80919910-80919929 | None:intergenic | 25.0% |
| ! | TATTTATAGGTAGAGAAAGA+AGG | + | chr6_4:80920118-80920137 | None:intergenic | 25.0% |
| !!! | TTTTGATGAGTTTGAGTTAA+GGG | + | chr6_4:80920149-80920168 | None:intergenic | 25.0% |
| !!! | ATTTTGATGAGTTTGAGTTA+AGG | + | chr6_4:80920150-80920169 | None:intergenic | 25.0% |
| !! | CATTGTCTTCATAATTTTCT+TGG | + | chr6_4:80920273-80920292 | None:intergenic | 25.0% |
| ! | AATTGCTTATTCTCTTATGT+TGG | - | chr6_4:80920418-80920437 | Msa0999160:CDS | 25.0% |
| TGAACAAAATAGTGAGAAGT+GGG | + | chr6_4:80917534-80917553 | None:intergenic | 30.0% | |
| ATGAACAAAATAGTGAGAAG+TGG | + | chr6_4:80917535-80917554 | None:intergenic | 30.0% | |
| ! | ACTTCTCACTATTTTGTTCA+TGG | - | chr6_4:80917534-80917553 | Msa0999160:CDS | 30.0% |
| TTCATGGCAATTTCTCATAT+GGG | - | chr6_4:80917550-80917569 | Msa0999160:CDS | 30.0% | |
| !! | TGCTTATTTTCTTATGTTGG+TGG | - | chr6_4:80917645-80917664 | Msa0999160:CDS | 30.0% |
| !! | ATAGGTTATTTTGTTCTGAG+TGG | - | chr6_4:80917952-80917971 | Msa0999160:intron | 30.0% |
| !!! | ATTTTTTCTTCAGATGTGGT+AGG | + | chr6_4:80917978-80917997 | None:intergenic | 30.0% |
| CATCATGTTTAATAGTGATG+TGG | - | chr6_4:80918238-80918257 | Msa0999160:intron | 30.0% | |
| !!! | TTTTTTTAGGTGTGTTGAGT+TGG | - | chr6_4:80918334-80918353 | Msa0999160:intron | 30.0% |
| ! | TTATTTTCGTCATGACTTTG+TGG | - | chr6_4:80918472-80918491 | Msa0999160:intron | 30.0% |
| TTTAAGGAACAAGGTTGTTA+AGG | - | chr6_4:80918725-80918744 | Msa0999160:intron | 30.0% | |
| ! | AATAAGAGGCTTGGTAATTT+GGG | - | chr6_4:80918859-80918878 | Msa0999160:intron | 30.0% |
| GTTTGTGCATTTACAATTTG+CGG | - | chr6_4:80919194-80919213 | Msa0999160:intron | 30.0% | |
| AAATCACCTTGAAAAGAATG+AGG | + | chr6_4:80919278-80919297 | None:intergenic | 30.0% | |
| AAGTTAATGTTGTTGAGTCT+TGG | - | chr6_4:80919337-80919356 | Msa0999160:intron | 30.0% | |
| TAATGAATTGTAGAATGGGT+AGG | - | chr6_4:80919379-80919398 | Msa0999160:intron | 30.0% | |
| GAAGACCAAGATACAAAAAA+GGG | + | chr6_4:80919407-80919426 | None:intergenic | 30.0% | |
| TCTAGAAATTAAACCTTCGT+GGG | + | chr6_4:80919443-80919462 | None:intergenic | 30.0% | |
| ! | TTCTAGAAATTAAACCTTCG+TGG | + | chr6_4:80919444-80919463 | None:intergenic | 30.0% |
| TGTATGAAAAGTAGACTGAT+TGG | - | chr6_4:80919477-80919496 | Msa0999160:intron | 30.0% | |
| GTATGAAAAGTAGACTGATT+GGG | - | chr6_4:80919478-80919497 | Msa0999160:intron | 30.0% | |
| !! | TGGTGTTTAGTTTGATGTTA+TGG | - | chr6_4:80919537-80919556 | Msa0999160:intron | 30.0% |
| TGCAAAATTAATATTCCCTC+CGG | - | chr6_4:80919645-80919664 | Msa0999160:intron | 30.0% | |
| !! | AATTCCGCTAATTTGTTTGA+AGG | - | chr6_4:80919760-80919779 | Msa0999160:intron | 30.0% |
| ATCTCCTTCAAACAAATTAG+CGG | + | chr6_4:80919767-80919786 | None:intergenic | 30.0% | |
| AAAGAAGGAAGAGTAAAATG+TGG | + | chr6_4:80920103-80920122 | None:intergenic | 30.0% | |
| AAGGGAAAAGTGGTATTTAT+AGG | + | chr6_4:80920131-80920150 | None:intergenic | 30.0% | |
| TGAACAAAATAGTGAGAAGT+GGG | + | chr6_4:80917534-80917553 | None:intergenic | 30.0% | |
| ATGAACAAAATAGTGAGAAG+TGG | + | chr6_4:80917535-80917554 | None:intergenic | 30.0% | |
| ! | ACTTCTCACTATTTTGTTCA+TGG | - | chr6_4:80917534-80917553 | Msa0999160:CDS | 30.0% |
| GTTCATGGCAATTTCTCATA+TGG | - | chr6_4:80917549-80917568 | Msa0999160:CDS | 35.0% | |
| !! | CATTCTAGAGTTATGTGATG+TGG | + | chr6_4:80918015-80918034 | None:intergenic | 35.0% |
| ! | CACATCACATAACTCTAGAA+TGG | - | chr6_4:80918013-80918032 | Msa0999160:intron | 35.0% |
| AAATGAACTCCTTTAGGTCT+TGG | - | chr6_4:80918046-80918065 | Msa0999160:intron | 35.0% | |
| TTGTCCTATGATTATGGGAA+CGG | - | chr6_4:80918147-80918166 | Msa0999160:intron | 35.0% | |
| GGTCAATTATATCGTTTACC+AGG | + | chr6_4:80918180-80918199 | None:intergenic | 35.0% | |
| TGCATTTGGAAGAGAATGAA+TGG | - | chr6_4:80918495-80918514 | Msa0999160:intron | 35.0% | |
| AATAAAGAGCGAAGAGAACT+AGG | - | chr6_4:80918605-80918624 | Msa0999160:intron | 35.0% | |
| TGCAAATACAACTTGGTACA+AGG | - | chr6_4:80918790-80918809 | Msa0999160:intron | 35.0% | |
| GCAAATACAACTTGGTACAA+GGG | - | chr6_4:80918791-80918810 | Msa0999160:intron | 35.0% | |
| ! | CAATAAGAGGCTTGGTAATT+TGG | - | chr6_4:80918858-80918877 | Msa0999160:intron | 35.0% |
| GCTTGTTCATTTGTAAGCTA+AGG | - | chr6_4:80919047-80919066 | Msa0999160:intron | 35.0% | |
| !!! | AGGATCCCTTTTTTGTATCT+TGG | - | chr6_4:80919399-80919418 | Msa0999160:intron | 35.0% |
| GGAAGACCAAGATACAAAAA+AGG | + | chr6_4:80919408-80919427 | None:intergenic | 35.0% | |
| ! | TTGTATCTTGGTCTTCCTAT+TGG | - | chr6_4:80919411-80919430 | Msa0999160:intron | 35.0% |
| TGATGTTATGGTAGAGTCTA+TGG | - | chr6_4:80919549-80919568 | Msa0999160:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | chr6_4:80919663-80919682 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | chr6_4:80919664-80919683 | None:intergenic | 35.0% | |
| ! | AACAAAGAGCTATTTCGACA+CGG | + | chr6_4:80920060-80920079 | None:intergenic | 35.0% |
| ! | AGTTTGAGTTAAGGGAAAAG+TGG | + | chr6_4:80920141-80920160 | None:intergenic | 35.0% |
| TTCATGGCAATTTCTCACAT+GGG | - | chr6_4:80920326-80920345 | Msa0999160:CDS | 35.0% | |
| AAAATCTGAGCATCACTTGT+AGG | + | chr6_4:80920389-80920408 | None:intergenic | 35.0% | |
| ! | TACAAGTGATGCTCAGATTT+TGG | - | chr6_4:80920388-80920407 | Msa0999160:CDS | 35.0% |
| TGCTTATTCTCTTATGTTGG+TGG | - | chr6_4:80920421-80920440 | Msa0999160:CDS | 35.0% | |
| ! | GAACGTTTGAAAGCACAAGA+AGG | + | chr6_4:80917807-80917826 | None:intergenic | 40.0% |
| !! | CTTGGATTGGTGATGAAGAA+CGG | - | chr6_4:80918113-80918132 | Msa0999160:intron | 40.0% |
| !! | TTGGATTGGTGATGAAGAAC+GGG | - | chr6_4:80918114-80918133 | Msa0999160:intron | 40.0% |
| TTGACCAAAATACACATGCG+TGG | - | chr6_4:80918194-80918213 | Msa0999160:intron | 40.0% | |
| ! | TCTTCCACGCATGTGTATTT+TGG | + | chr6_4:80918201-80918220 | None:intergenic | 40.0% |
| TGATGTGGAAGACAAACTCA+AGG | - | chr6_4:80918253-80918272 | Msa0999160:intron | 40.0% | |
| TCATGTAACGATCACTACAC+TGG | + | chr6_4:80918282-80918301 | None:intergenic | 40.0% | |
| GAAGCAATGTAAGAAGTAGC+AGG | - | chr6_4:80918356-80918375 | Msa0999160:intron | 40.0% | |
| ! | AGGTCTTTCGCATTTTATCC+AGG | - | chr6_4:80918376-80918395 | Msa0999160:intron | 40.0% |
| ! | GCATTTTATCCAGGAGAACT+TGG | - | chr6_4:80918385-80918404 | Msa0999160:intron | 40.0% |
| GAGAACTTGGAAACTAAGGA+TGG | - | chr6_4:80918398-80918417 | Msa0999160:intron | 40.0% | |
| TCATGACTTTGTGGTGCATT+TGG | - | chr6_4:80918481-80918500 | Msa0999160:intron | 40.0% | |
| TCAACGCATCCCAATTCAAA+TGG | - | chr6_4:80918545-80918564 | Msa0999160:intron | 40.0% | |
| CATCTCACGCCATTTGAATT+GGG | + | chr6_4:80918557-80918576 | None:intergenic | 40.0% | |
| ACATCTCACGCCATTTGAAT+TGG | + | chr6_4:80918558-80918577 | None:intergenic | 40.0% | |
| CTCTTCGCTCTTTATTGTCA+AGG | + | chr6_4:80918601-80918620 | None:intergenic | 40.0% | |
| ACGATAACAAGTAAAGACCG+AGG | - | chr6_4:80918644-80918663 | Msa0999160:intron | 40.0% | |
| GTGTGTAGATGTGTCTTAGA+GGG | - | chr6_4:80918747-80918766 | Msa0999160:intron | 40.0% | |
| TGTGTAGATGTGTCTTAGAG+GGG | - | chr6_4:80918748-80918767 | Msa0999160:intron | 40.0% | |
| GGGTTAAAGGAAGCAATAAG+AGG | - | chr6_4:80918845-80918864 | Msa0999160:intron | 40.0% | |
| AAAGGAAGCAATAAGAGGCT+TGG | - | chr6_4:80918850-80918869 | Msa0999160:intron | 40.0% | |
| TGTGCATTTACAATTTGCGG+AGG | - | chr6_4:80919197-80919216 | Msa0999160:intron | 40.0% | |
| !!! | TGCGGAGGACACTTTTTTAT+TGG | - | chr6_4:80919212-80919231 | Msa0999160:intron | 40.0% |
| !!! | GCGGAGGACACTTTTTTATT+GGG | - | chr6_4:80919213-80919232 | Msa0999160:intron | 40.0% |
| ! | AGCAGTCCTCATTCTTTTCA+AGG | - | chr6_4:80919269-80919288 | Msa0999160:intron | 40.0% |
| CAAGGTGATTTCAGATCTGA+AGG | - | chr6_4:80919287-80919306 | Msa0999160:intron | 40.0% | |
| TGTTGAGTCTTGGATGTTAG+AGG | - | chr6_4:80919347-80919366 | Msa0999160:intron | 40.0% | |
| GTTGAGTCTTGGATGTTAGA+GGG | - | chr6_4:80919348-80919367 | Msa0999160:intron | 40.0% | |
| TTGGATGTTAGAGGGATCTT+TGG | - | chr6_4:80919356-80919375 | Msa0999160:intron | 40.0% | |
| ! | TATCTTGGTCTTCCTATTGG+TGG | - | chr6_4:80919414-80919433 | Msa0999160:intron | 40.0% |
| TGAAAAGTAGACTGATTGGG+TGG | - | chr6_4:80919481-80919500 | Msa0999160:intron | 40.0% | |
| !! | ATCTTTGGTGTTAGGGTTTG+TGG | - | chr6_4:80919506-80919525 | Msa0999160:intron | 40.0% |
| TATGGCAGATCTCTAGTGTT+TGG | - | chr6_4:80919567-80919586 | Msa0999160:intron | 40.0% | |
| ATCTCTAGTGTTTGGTCCAA+CGG | - | chr6_4:80919575-80919594 | Msa0999160:intron | 40.0% | |
| GTGGCGTCTAAGAAATTTCA+AGG | + | chr6_4:80920084-80920103 | None:intergenic | 40.0% | |
| GTTCATGGCAATTTCTCACA+TGG | - | chr6_4:80920325-80920344 | Msa0999160:CDS | 40.0% | |
| ! | GATGCTCAGATTTTGGATCA+AGG | - | chr6_4:80920395-80920414 | Msa0999160:CDS | 40.0% |
| TGAGCATCACTTGTAGGAGT+AGG | + | chr6_4:80917607-80917626 | None:intergenic | 45.0% | |
| AGACTCTGAGCATCACTTGT+AGG | + | chr6_4:80917613-80917632 | None:intergenic | 45.0% | |
| !!! | TTTTCTTATGTTGGTGGCGC+TGG | - | chr6_4:80917651-80917670 | Msa0999160:CDS | 45.0% |
| GAACTCCTTTAGGTCTTGGA+TGG | - | chr6_4:80918050-80918069 | Msa0999160:intron | 45.0% | |
| AAACGCCATCCAAGACCTAA+AGG | + | chr6_4:80918058-80918077 | None:intergenic | 45.0% | |
| TTAGGTCTTGGATGGCGTTT+AGG | - | chr6_4:80918058-80918077 | Msa0999160:intron | 45.0% | |
| TAGGTCTTGGATGGCGTTTA+GGG | - | chr6_4:80918059-80918078 | Msa0999160:intron | 45.0% | |
| CGTTCTTCATCACCAATCCA+AGG | + | chr6_4:80918115-80918134 | None:intergenic | 45.0% | |
| TCCTATGATTATGGGAACGG+AGG | - | chr6_4:80918150-80918169 | Msa0999160:intron | 45.0% | |
| TCCTCCGTTCCCATAATCAT+AGG | + | chr6_4:80918154-80918173 | None:intergenic | 45.0% | |
| CCTTAGTTTCCAAGTTCTCC+TGG | + | chr6_4:80918397-80918416 | None:intergenic | 45.0% | |
| CCAGGAGAACTTGGAAACTA+AGG | - | chr6_4:80918394-80918413 | Msa0999160:intron | 45.0% | |
| TATCCCTTTGCCGAACTTCT+TGG | + | chr6_4:80918677-80918696 | None:intergenic | 45.0% | |
| AAGAAGTTCGGCAAAGGGAT+AGG | - | chr6_4:80918676-80918695 | Msa0999160:intron | 45.0% | |
| GGTGTGTAGATGTGTCTTAG+AGG | - | chr6_4:80918746-80918765 | Msa0999160:intron | 45.0% | |
| ACCTCATGAGACTGAAGCAA+TGG | - | chr6_4:80918823-80918842 | Msa0999160:intron | 45.0% | |
| CCTCATGAGACTGAAGCAAT+GGG | - | chr6_4:80918824-80918843 | Msa0999160:intron | 45.0% | |
| CTCATGAGACTGAAGCAATG+GGG | - | chr6_4:80918825-80918844 | Msa0999160:intron | 45.0% | |
| GACTGAAGCAATGGGGTTAA+AGG | - | chr6_4:80918832-80918851 | Msa0999160:intron | 45.0% | |
| ACTGATTGGGTGGACATCTT+TGG | - | chr6_4:80919491-80919510 | Msa0999160:intron | 45.0% | |
| !! | GGTGGACATCTTTGGTGTTA+GGG | - | chr6_4:80919499-80919518 | Msa0999160:intron | 45.0% |
| TAGGGTTTGTGGCACATCTT+TGG | - | chr6_4:80919517-80919536 | Msa0999160:intron | 45.0% | |
| ATCAATAGAACCCACACCGT+TGG | + | chr6_4:80919594-80919613 | None:intergenic | 45.0% | |
| ! | AAGAGCTATTTCGACACGGT+TGG | + | chr6_4:80920056-80920075 | None:intergenic | 45.0% |
| TGAGCATCACTTGTAGGAGT+AGG | + | chr6_4:80917607-80917626 | None:intergenic | 45.0% | |
| TCACTTGTAGGAGTAGGTGC+TGG | + | chr6_4:80917601-80917620 | None:intergenic | 50.0% | |
| TCCAAACGCGTGAGATTGCT+AGG | - | chr6_4:80917850-80917869 | Msa0999160:intron | 50.0% | |
| ACCTAGCAATCTCACGCGTT+TGG | + | chr6_4:80917854-80917873 | None:intergenic | 50.0% | |
| AGGTCTTGGATGGCGTTTAG+GGG | - | chr6_4:80918060-80918079 | Msa0999160:intron | 50.0% | |
| TTGGATGGCGTTTAGGGGAT+AGG | - | chr6_4:80918065-80918084 | Msa0999160:intron | 50.0% | |
| TAGGGGATAGGTCGAAGACA+AGG | - | chr6_4:80918077-80918096 | Msa0999160:intron | 50.0% | |
| AGGGGATAGGTCGAAGACAA+GGG | - | chr6_4:80918078-80918097 | Msa0999160:intron | 50.0% | |
| CAAGTAAAGACCGAGGCAGA+TGG | - | chr6_4:80918651-80918670 | Msa0999160:intron | 50.0% | |
| AACTTCTTGGCCATCTGCCT+CGG | + | chr6_4:80918664-80918683 | None:intergenic | 50.0% | |
| AGGCAGATGGCCAAGAAGTT+CGG | - | chr6_4:80918664-80918683 | Msa0999160:intron | 50.0% | |
| ATGGCCAAGAAGTTCGGCAA+AGG | - | chr6_4:80918670-80918689 | Msa0999160:intron | 50.0% | |
| TGGCCAAGAAGTTCGGCAAA+GGG | - | chr6_4:80918671-80918690 | Msa0999160:intron | 50.0% | |
| CCCATTGCTTCAGTCTCATG+AGG | + | chr6_4:80918827-80918846 | None:intergenic | 50.0% | |
| !! | GGGTGGACATCTTTGGTGTT+AGG | - | chr6_4:80919498-80919517 | Msa0999160:intron | 50.0% |
| TAGTGTTTGGTCCAACGGTG+TGG | - | chr6_4:80919580-80919599 | Msa0999160:intron | 50.0% | |
| AGTGTTTGGTCCAACGGTGT+GGG | - | chr6_4:80919581-80919600 | Msa0999160:intron | 50.0% | |
| !! | TTGGTGCGACTCGTTGACTT+GGG | + | chr6_4:80920037-80920056 | None:intergenic | 50.0% |
| TCACTTGTAGGAGTAGGTGC+TGG | + | chr6_4:80917601-80917620 | None:intergenic | 50.0% | |
| !! | TTCTCTTATGTTGGTGGCGC+TGG | - | chr6_4:80920427-80920446 | Msa0999160:CDS | 50.0% |
| ATAGGTCGAAGACAAGGGCG+TGG | - | chr6_4:80918083-80918102 | Msa0999160:intron | 55.0% | |
| GCGTGGCATGATCCTTGGAT+TGG | - | chr6_4:80918100-80918119 | Msa0999160:intron | 55.0% | |
| TATGGGAACGGAGGACTTCC+TGG | - | chr6_4:80918159-80918178 | Msa0999160:intron | 55.0% | |
| GCTTCAGTCTCATGAGGTCG+TGG | + | chr6_4:80918821-80918840 | None:intergenic | 55.0% | |
| CTTCGTGGGTCTCCACCAAT+AGG | + | chr6_4:80919429-80919448 | None:intergenic | 55.0% | |
| CTATTGGTGGAGACCCACGA+AGG | - | chr6_4:80919427-80919446 | Msa0999160:intron | 55.0% | |
| ! | GTTGGTGCGACTCGTTGACT+TGG | + | chr6_4:80920038-80920057 | None:intergenic | 55.0% |
| ! | CAAGGGCGTGGCATGATCCT+TGG | - | chr6_4:80918095-80918114 | Msa0999160:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 80917505 | 80920472 | 80917505 | ID=Msa0999160;Name=Msa0999160 |
| chr6_4 | mRNA | 80917505 | 80920472 | 80917505 | ID=Msa0999160-mRNA-1;Parent=Msa0999160;Name=Msa0999160-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|1|0|0.5|2|0|126 |
| chr6_4 | exon | 80920305 | 80920472 | 80920305 | ID=Msa0999160-mRNA-1:exon:15425;Parent=Msa0999160-mRNA-1 |
| chr6_4 | exon | 80917505 | 80917717 | 80917505 | ID=Msa0999160-mRNA-1:exon:15424;Parent=Msa0999160-mRNA-1 |
| chr6_4 | CDS | 80920305 | 80920472 | 80920305 | ID=Msa0999160-mRNA-1:cds;Parent=Msa0999160-mRNA-1 |
| chr6_4 | CDS | 80917505 | 80917717 | 80917505 | ID=Msa0999160-mRNA-1:cds;Parent=Msa0999160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
