Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995600 | XP_004497487.1 | 72.538 | 528 | 139 | 1 | 1 | 522 | 1 | 528 | 0.0 | 818 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995600 | sp|B9SCB6|TPS2_RICCO | 51.810 | 525 | 245 | 2 | 1 | 520 | 1 | 522 | 0.0 | 581 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995600 | A0A1S2Y0Q7 | 72.538 | 528 | 139 | 1 | 1 | 522 | 1 | 528 | 0.0 | 818 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0995410 | Msa0995600 | 0.858904 | 5.979056e-63 | -8.615850e-47 |
Msa0995430 | Msa0995600 | 0.817645 | 2.961694e-52 | -8.615850e-47 |
Msa0995440 | Msa0995600 | 0.814048 | 1.878210e-51 | -8.615850e-47 |
Msa0995470 | Msa0995600 | 0.824058 | 9.913403e-54 | -8.615850e-47 |
Msa0995480 | Msa0995600 | 0.819162 | 1.342077e-52 | -8.615850e-47 |
Msa0995490 | Msa0995600 | 0.870813 | 1.098909e-66 | -8.615850e-47 |
Msa0995500 | Msa0995600 | 0.817249 | 3.636496e-52 | -8.615850e-47 |
Msa0995570 | Msa0995600 | 0.819774 | 9.732540e-53 | -8.615850e-47 |
Msa0995580 | Msa0995600 | 0.846428 | 2.185161e-59 | -8.615850e-47 |
Msa0995600 | Msa0995610 | 0.860502 | 1.975185e-63 | -8.615850e-47 |
Msa0995600 | Msa0995620 | 0.830664 | 2.586173e-55 | -8.615850e-47 |
Msa0995600 | Msa0995630 | 0.863957 | 1.717176e-64 | -8.615850e-47 |
Msa0894010 | Msa0995600 | 0.816930 | 4.290344e-52 | -8.615850e-47 |
Msa0894020 | Msa0995600 | 0.806956 | 6.395253e-50 | -8.615850e-47 |
Msa0894030 | Msa0995600 | 0.823760 | 1.164748e-53 | -8.615850e-47 |
Msa0894040 | Msa0995600 | 0.835472 | 1.645469e-56 | -8.615850e-47 |
Msa0894070 | Msa0995600 | 0.815405 | 9.402931e-52 | -8.615850e-47 |
Msa0894080 | Msa0995600 | 0.873120 | 1.880237e-67 | -8.615850e-47 |
Msa0894100 | Msa0995600 | 0.862939 | 3.551856e-64 | -8.615850e-47 |
Msa0916290 | Msa0995600 | 0.837127 | 6.244957e-57 | -8.615850e-47 |
Msa0916310 | Msa0995600 | 0.817199 | 3.731548e-52 | -8.615850e-47 |
Msa0920710 | Msa0995600 | 0.811785 | 5.885221e-51 | -8.615850e-47 |
Msa0920720 | Msa0995600 | 0.839827 | 1.255347e-57 | -8.615850e-47 |
Msa0920760 | Msa0995600 | 0.818911 | 1.530625e-52 | -8.615850e-47 |
Msa0920770 | Msa0995600 | 0.846414 | 2.205536e-59 | -8.615850e-47 |
Msa0920810 | Msa0995600 | 0.837378 | 5.383918e-57 | -8.615850e-47 |
Msa0920820 | Msa0995600 | 0.846870 | 1.654657e-59 | -8.615850e-47 |
Msa0920830 | Msa0995600 | 0.804617 | 1.982323e-49 | -8.615850e-47 |
Msa0920920 | Msa0995600 | 0.823349 | 1.453321e-53 | -8.615850e-47 |
Msa0959170 | Msa0995600 | 0.841276 | 5.242433e-58 | -8.615850e-47 |
Msa0959180 | Msa0995600 | 0.840916 | 6.516215e-58 | -8.615850e-47 |
Msa0959190 | Msa0995600 | 0.827103 | 1.882084e-54 | -8.615850e-47 |
Msa0959210 | Msa0995600 | 0.842494 | 2.498372e-58 | -8.615850e-47 |
Msa0959240 | Msa0995600 | 0.815399 | 9.432428e-52 | -8.615850e-47 |
Msa0959250 | Msa0995600 | 0.847235 | 1.314955e-59 | -8.615850e-47 |
Msa0959270 | Msa0995600 | 0.832477 | 9.243156e-56 | -8.615850e-47 |
Msa0959280 | Msa0995600 | 0.834602 | 2.725685e-56 | -8.615850e-47 |
Msa0967190 | Msa0995600 | 0.822536 | 2.247238e-53 | -8.615850e-47 |
Msa0967200 | Msa0995600 | 0.831702 | 1.436812e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995600 | MtrunA17_Chr7g0236991 | 69.070 | 527 | 154 | 2 | 1 | 521 | 1 | 524 | 0.0 | 774 |
Msa0995600 | MtrunA17_Chr7g0237001 | 68.880 | 527 | 155 | 2 | 1 | 521 | 1 | 524 | 0.0 | 772 |
Msa0995600 | MtrunA17_Chr7g0237041 | 68.880 | 527 | 155 | 2 | 1 | 521 | 1 | 524 | 0.0 | 772 |
Msa0995600 | MtrunA17_Chr7g0237081 | 68.880 | 527 | 155 | 2 | 1 | 521 | 1 | 524 | 0.0 | 772 |
Msa0995600 | MtrunA17_Chr7g0237051 | 68.880 | 527 | 155 | 2 | 1 | 521 | 1 | 524 | 0.0 | 772 |
Msa0995600 | MtrunA17_Chr6g0466051 | 69.318 | 528 | 153 | 2 | 1 | 522 | 1 | 525 | 0.0 | 765 |
Msa0995600 | MtrunA17_Chr6g0465911 | 69.129 | 528 | 154 | 2 | 1 | 522 | 1 | 525 | 0.0 | 763 |
Msa0995600 | MtrunA17_Chr5g0425371 | 68.501 | 527 | 157 | 2 | 1 | 521 | 1 | 524 | 0.0 | 756 |
Msa0995600 | MtrunA17_Chr6g0465441 | 66.667 | 528 | 167 | 2 | 1 | 522 | 1 | 525 | 0.0 | 742 |
Msa0995600 | MtrunA17_Chr6g0451711 | 66.098 | 528 | 172 | 1 | 1 | 521 | 1 | 528 | 0.0 | 741 |
Msa0995600 | MtrunA17_Chr3g0105071 | 65.530 | 528 | 175 | 2 | 1 | 521 | 1 | 528 | 0.0 | 726 |
Msa0995600 | MtrunA17_Chr6g0465851 | 70.204 | 490 | 140 | 1 | 39 | 522 | 1 | 490 | 0.0 | 719 |
Msa0995600 | MtrunA17_Chr7g0236961 | 70.940 | 468 | 136 | 0 | 54 | 521 | 2 | 469 | 0.0 | 717 |
Msa0995600 | MtrunA17_Chr4g0024691 | 65.577 | 520 | 173 | 1 | 8 | 521 | 13 | 532 | 0.0 | 717 |
Msa0995600 | MtrunA17_Chr7g0237011 | 70.940 | 468 | 136 | 0 | 54 | 521 | 2 | 469 | 0.0 | 716 |
Msa0995600 | MtrunA17_Chr3g0082691 | 65.571 | 517 | 171 | 2 | 12 | 521 | 8 | 524 | 0.0 | 715 |
Msa0995600 | MtrunA17_Chr5g0431571 | 66.216 | 518 | 168 | 2 | 12 | 522 | 4 | 521 | 0.0 | 708 |
Msa0995600 | MtrunA17_Chr5g0431651 | 64.797 | 517 | 174 | 2 | 13 | 521 | 7 | 523 | 0.0 | 697 |
Msa0995600 | MtrunA17_Chr4g0042111 | 57.471 | 522 | 213 | 2 | 9 | 522 | 14 | 534 | 0.0 | 631 |
Msa0995600 | MtrunA17_Chr7g0236971 | 69.892 | 372 | 112 | 0 | 150 | 521 | 1 | 372 | 0.0 | 564 |
Msa0995600 | MtrunA17_Chr6g0465981 | 70.745 | 376 | 101 | 2 | 1 | 370 | 1 | 373 | 0.0 | 553 |
Msa0995600 | MtrunA17_Chr6g0465871 | 70.745 | 376 | 101 | 2 | 1 | 370 | 1 | 373 | 0.0 | 553 |
Msa0995600 | MtrunA17_Chr6g0466081 | 70.745 | 376 | 101 | 2 | 1 | 370 | 1 | 373 | 0.0 | 553 |
Msa0995600 | MtrunA17_Chr6g0466111 | 72.485 | 338 | 87 | 1 | 39 | 370 | 1 | 338 | 2.72e-180 | 509 |
Msa0995600 | MtrunA17_Chr6g0465931 | 72.189 | 338 | 88 | 1 | 39 | 370 | 1 | 338 | 4.91e-179 | 506 |
Msa0995600 | MtrunA17_Chr7g0236951 | 72.436 | 312 | 86 | 0 | 54 | 365 | 2 | 313 | 8.99e-172 | 487 |
Msa0995600 | MtrunA17_Chr7g0237031 | 72.436 | 312 | 86 | 0 | 54 | 365 | 2 | 313 | 2.43e-171 | 486 |
Msa0995600 | MtrunA17_Chr2g0319041 | 44.681 | 517 | 274 | 7 | 15 | 520 | 12 | 527 | 6.01e-162 | 471 |
Msa0995600 | MtrunA17_Chr8g0336181 | 43.536 | 526 | 285 | 4 | 13 | 527 | 9 | 533 | 1.17e-159 | 466 |
Msa0995600 | MtrunA17_Chr2g0319051 | 44.956 | 456 | 247 | 4 | 65 | 517 | 27 | 481 | 2.61e-150 | 440 |
Msa0995600 | MtrunA17_Chr4g0008621 | 44.500 | 400 | 212 | 5 | 15 | 404 | 19 | 418 | 7.48e-118 | 354 |
Msa0995600 | MtrunA17_Chr5g0445511 | 65.272 | 239 | 83 | 0 | 145 | 383 | 1 | 239 | 1.32e-113 | 336 |
Msa0995600 | MtrunA17_Chr4g0023911 | 35.547 | 512 | 319 | 4 | 13 | 517 | 41 | 548 | 4.95e-108 | 334 |
Msa0995600 | MtrunA17_Chr2g0319071 | 36.989 | 465 | 245 | 8 | 65 | 526 | 46 | 465 | 2.53e-106 | 327 |
Msa0995600 | MtrunA17_Chr6g0466031 | 65.517 | 232 | 80 | 0 | 291 | 522 | 1 | 232 | 9.17e-106 | 317 |
Msa0995600 | MtrunA17_Chr2g0310331 | 37.008 | 508 | 306 | 8 | 17 | 517 | 53 | 553 | 2.09e-100 | 314 |
Msa0995600 | MtrunA17_Chr2g0323151 | 35.776 | 464 | 283 | 4 | 65 | 524 | 4 | 456 | 2.50e-99 | 308 |
Msa0995600 | MtrunA17_Chr2g0323131 | 35.394 | 469 | 287 | 5 | 61 | 524 | 84 | 541 | 1.66e-98 | 309 |
Msa0995600 | MtrunA17_Chr7g0237071 | 70.149 | 201 | 60 | 0 | 54 | 254 | 2 | 202 | 3.91e-98 | 296 |
Msa0995600 | MtrunA17_Chr6g0466021 | 69.118 | 204 | 54 | 2 | 1 | 198 | 1 | 201 | 4.43e-96 | 290 |
Msa0995600 | MtrunA17_Chr7g0237061 | 60.684 | 234 | 69 | 2 | 291 | 524 | 1 | 211 | 9.07e-94 | 285 |
Msa0995600 | MtrunA17_Chr8g0357411 | 34.331 | 501 | 311 | 5 | 7 | 497 | 45 | 537 | 1.49e-91 | 291 |
Msa0995600 | MtrunA17_Chr4g0048921 | 34.409 | 465 | 298 | 4 | 59 | 519 | 81 | 542 | 4.09e-86 | 276 |
Msa0995600 | MtrunA17_Chr4g0048911 | 30.118 | 508 | 337 | 8 | 25 | 521 | 34 | 534 | 1.18e-78 | 257 |
Msa0995600 | MtrunA17_Chr7g0237021 | 70.139 | 144 | 43 | 0 | 379 | 522 | 1 | 144 | 4.70e-71 | 224 |
Msa0995600 | MtrunA17_Chr7g0236941 | 70.139 | 144 | 43 | 0 | 379 | 522 | 1 | 144 | 4.70e-71 | 224 |
Msa0995600 | MtrunA17_Chr2g0280581 | 28.631 | 482 | 321 | 7 | 53 | 519 | 21 | 494 | 8.82e-69 | 229 |
Msa0995600 | MtrunA17_Chr2g0319081 | 39.189 | 296 | 160 | 6 | 227 | 520 | 120 | 397 | 1.57e-68 | 226 |
Msa0995600 | MtrunA17_Chr2g0319081 | 35.252 | 139 | 79 | 5 | 1 | 129 | 3 | 140 | 1.15e-18 | 88.6 |
Msa0995600 | MtrunA17_Chr2g0310401 | 34.656 | 378 | 243 | 3 | 124 | 498 | 5 | 381 | 2.50e-68 | 226 |
Msa0995600 | MtrunA17_Chr3g0109021 | 29.832 | 476 | 322 | 7 | 53 | 519 | 17 | 489 | 5.34e-67 | 225 |
Msa0995600 | MtrunA17_Chr3g0108941 | 29.263 | 475 | 327 | 7 | 53 | 519 | 17 | 490 | 1.30e-66 | 224 |
Msa0995600 | MtrunA17_Chr3g0105691 | 29.598 | 473 | 327 | 5 | 53 | 519 | 50 | 522 | 1.89e-66 | 224 |
Msa0995600 | MtrunA17_Chr3g0109031 | 29.202 | 476 | 325 | 7 | 53 | 519 | 17 | 489 | 1.01e-65 | 221 |
Msa0995600 | MtrunA17_Chr3g0109001 | 29.350 | 477 | 324 | 7 | 53 | 519 | 17 | 490 | 1.13e-65 | 221 |
Msa0995600 | MtrunA17_Chr6g0477111 | 29.247 | 465 | 321 | 7 | 62 | 519 | 1 | 464 | 1.15e-64 | 218 |
Msa0995600 | MtrunA17_Chr3g0108981 | 29.122 | 467 | 320 | 5 | 62 | 519 | 1 | 465 | 5.14e-64 | 216 |
Msa0995600 | MtrunA17_Chr3g0108961 | 29.122 | 467 | 320 | 5 | 62 | 519 | 1 | 465 | 5.14e-64 | 216 |
Msa0995600 | MtrunA17_Chr3g0099031 | 29.536 | 474 | 326 | 7 | 53 | 519 | 17 | 489 | 5.22e-63 | 214 |
Msa0995600 | MtrunA17_Chr3g0108991 | 28.692 | 474 | 330 | 7 | 53 | 519 | 17 | 489 | 6.80e-63 | 214 |
Msa0995600 | MtrunA17_Chr3g0108951 | 28.692 | 474 | 330 | 7 | 53 | 519 | 17 | 489 | 6.80e-63 | 214 |
Msa0995600 | MtrunA17_Chr6g0465941 | 65.278 | 144 | 50 | 0 | 379 | 522 | 1 | 144 | 9.50e-63 | 202 |
Msa0995600 | MtrunA17_Chr6g0466121 | 65.278 | 144 | 50 | 0 | 379 | 522 | 1 | 144 | 9.50e-63 | 202 |
Msa0995600 | MtrunA17_Chr6g0465991 | 65.278 | 144 | 50 | 0 | 379 | 522 | 1 | 144 | 9.50e-63 | 202 |
Msa0995600 | MtrunA17_Chr6g0466091 | 65.278 | 144 | 50 | 0 | 379 | 522 | 1 | 144 | 9.50e-63 | 202 |
Msa0995600 | MtrunA17_Chr6g0465881 | 65.278 | 144 | 50 | 0 | 379 | 522 | 1 | 144 | 1.09e-62 | 202 |
Msa0995600 | MtrunA17_Chr3g0108971 | 28.602 | 465 | 324 | 7 | 62 | 519 | 1 | 464 | 6.29e-62 | 211 |
Msa0995600 | MtrunA17_Chr3g0109011 | 28.480 | 467 | 322 | 7 | 62 | 519 | 1 | 464 | 1.76e-61 | 209 |
Msa0995600 | MtrunA17_Chr5g0445501 | 63.636 | 143 | 52 | 0 | 379 | 521 | 1 | 143 | 5.27e-61 | 198 |
Msa0995600 | MtrunA17_Chr7g0236921 | 64.615 | 130 | 42 | 1 | 397 | 522 | 1 | 130 | 1.62e-55 | 183 |
Msa0995600 | MtrunA17_Chr6g0477121 | 28.928 | 401 | 274 | 6 | 127 | 519 | 10 | 407 | 2.14e-54 | 189 |
Msa0995600 | MtrunA17_Chr7g0236981 | 62.222 | 135 | 42 | 2 | 1 | 129 | 1 | 132 | 2.43e-52 | 174 |
Msa0995600 | MtrunA17_Chr7g0236931 | 62.400 | 125 | 44 | 1 | 397 | 521 | 1 | 122 | 2.76e-52 | 174 |
Msa0995600 | MtrunA17_Chr7g0233861 | 62.963 | 135 | 41 | 1 | 190 | 324 | 33 | 158 | 3.56e-52 | 175 |
Msa0995600 | MtrunA17_Chr7g0217361 | 33.704 | 270 | 178 | 1 | 249 | 517 | 8 | 277 | 1.28e-44 | 159 |
Msa0995600 | MtrunA17_Chr8g0357221 | 35.060 | 251 | 146 | 4 | 10 | 251 | 48 | 290 | 3.21e-39 | 144 |
Msa0995600 | MtrunA17_Chr5g0445521 | 62.245 | 98 | 31 | 1 | 1 | 92 | 1 | 98 | 5.09e-35 | 127 |
Msa0995600 | MtrunA17_Chr3g0101681 | 27.869 | 427 | 265 | 15 | 64 | 458 | 276 | 691 | 1.85e-34 | 138 |
Msa0995600 | MtrunA17_Chr5g0445401 | 68.421 | 95 | 26 | 2 | 160 | 251 | 1 | 94 | 7.22e-34 | 123 |
Msa0995600 | MtrunA17_Chr2g0310121 | 27.248 | 367 | 233 | 10 | 64 | 403 | 275 | 634 | 3.31e-33 | 134 |
Msa0995600 | MtrunA17_Chr8g0357231 | 31.884 | 207 | 140 | 1 | 292 | 497 | 1 | 207 | 6.21e-31 | 120 |
Msa0995600 | MtrunA17_Chr7g0259881 | 27.491 | 291 | 178 | 7 | 62 | 322 | 227 | 514 | 3.96e-23 | 103 |
Msa0995600 | MtrunA17_Chr7g0218001 | 29.927 | 274 | 160 | 6 | 62 | 304 | 344 | 616 | 2.76e-22 | 101 |
Msa0995600 | MtrunA17_Chr3g0082711 | 48.276 | 87 | 28 | 1 | 435 | 521 | 1 | 70 | 9.37e-21 | 87.0 |
Msa0995600 | MtrunA17_Chr7g0217351 | 29.897 | 194 | 130 | 3 | 62 | 252 | 83 | 273 | 3.36e-20 | 91.3 |
Msa0995600 | MtrunA17_Chr2g0281651 | 24.830 | 294 | 210 | 7 | 227 | 516 | 43 | 329 | 6.57e-18 | 85.9 |
Msa0995600 | MtrunA17_Chr7g0218041 | 30.380 | 237 | 140 | 6 | 114 | 326 | 3 | 238 | 1.65e-13 | 72.4 |
Msa0995600 | MtrunA17_Chr2g0310411 | 28.814 | 118 | 78 | 3 | 10 | 125 | 51 | 164 | 2.32e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995600 | AT5G23960.2 | 38.536 | 519 | 307 | 4 | 13 | 522 | 3 | 518 | 2.78e-137 | 408 |
Msa0995600 | AT5G23960.1 | 38.506 | 522 | 305 | 6 | 13 | 522 | 3 | 520 | 2.90e-136 | 405 |
Msa0995600 | AT1G70080.1 | 36.742 | 528 | 318 | 8 | 8 | 521 | 57 | 582 | 1.04e-121 | 370 |
Msa0995600 | AT3G14490.1 | 36.873 | 518 | 310 | 6 | 17 | 522 | 60 | 572 | 3.77e-116 | 356 |
Msa0995600 | AT1G31950.3 | 36.538 | 520 | 301 | 6 | 22 | 522 | 70 | 579 | 7.10e-115 | 353 |
Msa0995600 | AT3G14520.1 | 36.328 | 512 | 310 | 6 | 22 | 521 | 68 | 575 | 4.27e-114 | 350 |
Msa0995600 | AT1G31950.1 | 36.133 | 512 | 313 | 5 | 22 | 522 | 70 | 578 | 6.86e-114 | 350 |
Msa0995600 | AT3G14540.1 | 36.204 | 511 | 312 | 5 | 22 | 521 | 65 | 572 | 5.60e-111 | 342 |
Msa0995600 | AT3G32030.1 | 33.208 | 533 | 337 | 6 | 2 | 524 | 54 | 577 | 5.28e-108 | 335 |
Msa0995600 | AT3G29410.1 | 35.271 | 516 | 320 | 6 | 17 | 522 | 64 | 575 | 7.47e-107 | 332 |
Msa0995600 | AT5G44630.1 | 35.453 | 519 | 318 | 7 | 18 | 522 | 14 | 529 | 4.87e-106 | 328 |
Msa0995600 | AT4G20200.1 | 35.992 | 489 | 293 | 8 | 48 | 521 | 92 | 575 | 2.85e-105 | 328 |
Msa0995600 | AT3G29410.2 | 36.580 | 462 | 289 | 3 | 63 | 522 | 11 | 470 | 2.88e-105 | 324 |
Msa0995600 | AT1G31950.2 | 36.717 | 463 | 264 | 6 | 22 | 465 | 70 | 522 | 2.43e-103 | 320 |
Msa0995600 | AT4G20210.1 | 33.973 | 521 | 321 | 8 | 17 | 521 | 58 | 571 | 6.87e-103 | 322 |
Msa0995600 | AT1G33750.1 | 34.122 | 507 | 322 | 5 | 24 | 522 | 73 | 575 | 7.25e-102 | 319 |
Msa0995600 | AT3G14540.2 | 36.771 | 446 | 269 | 4 | 22 | 457 | 65 | 507 | 1.32e-100 | 313 |
Msa0995600 | AT4G13300.1 | 33.725 | 510 | 322 | 7 | 25 | 522 | 20 | 525 | 2.81e-98 | 308 |
Msa0995600 | AT4G15870.1 | 34.834 | 511 | 301 | 10 | 25 | 520 | 75 | 568 | 1.24e-96 | 305 |
Msa0995600 | AT3G29190.1 | 33.833 | 467 | 295 | 6 | 63 | 521 | 112 | 572 | 2.71e-96 | 304 |
Msa0995600 | AT4G20230.1 | 32.819 | 518 | 325 | 8 | 25 | 526 | 70 | 580 | 8.16e-96 | 303 |
Msa0995600 | AT4G20230.2 | 32.819 | 518 | 325 | 8 | 25 | 526 | 82 | 592 | 1.52e-95 | 303 |
Msa0995600 | AT4G13280.2 | 33.465 | 508 | 322 | 7 | 27 | 522 | 22 | 525 | 8.83e-95 | 299 |
Msa0995600 | AT3G29110.1 | 34.570 | 512 | 316 | 9 | 17 | 512 | 55 | 563 | 5.02e-94 | 298 |
Msa0995600 | AT2G23230.2 | 34.357 | 521 | 323 | 11 | 16 | 521 | 55 | 571 | 2.67e-93 | 297 |
Msa0995600 | AT2G23230.1 | 34.165 | 521 | 319 | 12 | 16 | 521 | 55 | 566 | 7.61e-91 | 290 |
Msa0995600 | AT1G66020.1 | 32.567 | 522 | 337 | 6 | 17 | 526 | 56 | 574 | 4.78e-90 | 288 |
Msa0995600 | AT4G16730.1 | 32.780 | 482 | 304 | 7 | 53 | 520 | 33 | 508 | 2.29e-89 | 285 |
Msa0995600 | AT4G16730.2 | 33.120 | 468 | 293 | 7 | 67 | 520 | 1 | 462 | 2.13e-87 | 278 |
Msa0995600 | AT1G61680.1 | 33.333 | 465 | 298 | 4 | 61 | 519 | 90 | 548 | 7.23e-85 | 274 |
Msa0995600 | AT1G48800.1 | 31.286 | 521 | 336 | 10 | 17 | 521 | 63 | 577 | 9.27e-85 | 274 |
Msa0995600 | AT4G16740.1 | 32.325 | 529 | 330 | 11 | 12 | 524 | 21 | 537 | 3.53e-84 | 272 |
Msa0995600 | AT4G13280.1 | 32.480 | 508 | 297 | 9 | 27 | 522 | 22 | 495 | 6.64e-83 | 267 |
Msa0995600 | AT2G24210.1 | 31.332 | 533 | 340 | 12 | 10 | 524 | 39 | 563 | 1.90e-81 | 265 |
Msa0995600 | AT1G61680.2 | 32.903 | 465 | 293 | 5 | 61 | 519 | 90 | 541 | 3.02e-81 | 264 |
Msa0995600 | AT5G48110.1 | 38.978 | 313 | 187 | 4 | 209 | 520 | 1 | 310 | 1.23e-80 | 255 |
Msa0995600 | AT3G25810.1 | 31.138 | 501 | 321 | 9 | 15 | 497 | 45 | 539 | 1.91e-78 | 258 |
Msa0995600 | AT3G25820.1 | 30.909 | 495 | 328 | 8 | 15 | 497 | 45 | 537 | 1.37e-76 | 253 |
Msa0995600 | AT3G25830.1 | 30.909 | 495 | 328 | 8 | 15 | 497 | 45 | 537 | 1.37e-76 | 253 |
Msa0995600 | AT1G48820.1 | 30.375 | 507 | 300 | 10 | 17 | 513 | 63 | 526 | 1.81e-76 | 251 |
Msa0995600 | AT4G16740.2 | 34.748 | 377 | 223 | 7 | 14 | 375 | 23 | 391 | 2.19e-67 | 223 |
Msa0995600 | AT1G66020.2 | 34.417 | 369 | 227 | 6 | 17 | 373 | 56 | 421 | 2.61e-65 | 218 |
Msa0995600 | AT3G25820.2 | 31.579 | 380 | 247 | 7 | 15 | 383 | 45 | 422 | 2.80e-59 | 203 |
Msa0995600 | AT4G16740.4 | 34.663 | 326 | 191 | 6 | 14 | 324 | 23 | 341 | 4.17e-56 | 192 |
Msa0995600 | AT4G16740.3 | 34.663 | 326 | 191 | 6 | 14 | 324 | 23 | 341 | 4.17e-56 | 192 |
Msa0995600 | AT3G25820.4 | 31.875 | 320 | 207 | 5 | 15 | 324 | 45 | 363 | 1.05e-50 | 179 |
Msa0995600 | AT3G25820.3 | 31.875 | 320 | 207 | 5 | 15 | 324 | 45 | 363 | 1.05e-50 | 179 |
Msa0995600 | AT1G79460.1 | 24.346 | 497 | 327 | 16 | 64 | 525 | 274 | 756 | 8.57e-28 | 118 |
Msa0995600 | AT1G61120.1 | 22.998 | 487 | 343 | 8 | 62 | 525 | 283 | 760 | 3.97e-25 | 110 |
Msa0995600 | AT4G02780.1 | 28.788 | 264 | 152 | 6 | 62 | 294 | 329 | 587 | 2.33e-22 | 101 |
Find 90 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTCTCTTGCTGTGCTATTT+AGG | 0.103456 | 6_4:+72061200 | Msa0995600:CDS |
TCTACTTGCATTGGCAAAAT+TGG | 0.119753 | 6_4:+72062119 | Msa0995600:CDS |
TTCTCTTGCTGTGCTATTTA+GGG | 0.189824 | 6_4:+72061201 | Msa0995600:CDS |
ATGCAAGTAGAATTTCATTA+TGG | 0.248221 | 6_4:-72062107 | None:intergenic |
AGCCTACATCAAAAGGAATT+TGG | 0.257080 | 6_4:+72062159 | Msa0995600:CDS |
TACAAGAGTTATGTTCAAAA+TGG | 0.269625 | 6_4:+72061151 | Msa0995600:CDS |
TCCTTATGCTTCAGAATCTA+TGG | 0.272455 | 6_4:+72060812 | Msa0995600:CDS |
AGACGAAATTAATCAAGTTT+TGG | 0.301364 | 6_4:+72061120 | Msa0995600:CDS |
CAGATTTCCACCCTAGCGTT+TGG | 0.311610 | 6_4:+72060775 | Msa0995600:CDS |
AGATTTCCACCCTAGCGTTT+GGG | 0.325288 | 6_4:+72060776 | Msa0995600:CDS |
TGCAAAACCGATTTCTCATT+AGG | 0.335406 | 6_4:-72060741 | None:intergenic |
TAATTGCTTGGAGGATCTTC+CGG | 0.335446 | 6_4:+72062790 | Msa0995600:CDS |
TGTGCGGCAATATTCATATC+AGG | 0.335782 | 6_4:-72060998 | None:intergenic |
ATGCTGCTGCTATACATTGT+AGG | 0.337003 | 6_4:+72063454 | Msa0995600:CDS |
TGAGGGAATATGATATGAAT+AGG | 0.340079 | 6_4:+72063661 | Msa0995600:CDS |
TTCCTTGCTCGTCCTTGAAT+TGG | 0.345275 | 6_4:-72061831 | None:intergenic |
GAGTAGTAGAATGTTGCTTT+TGG | 0.347068 | 6_4:+72062347 | Msa0995600:CDS |
CTGCTATACATTGTAGGCTT+AGG | 0.348781 | 6_4:+72063460 | Msa0995600:CDS |
AGGACATGTTTCTTCGTACT+TGG | 0.361077 | 6_4:+72063629 | Msa0995600:CDS |
GATTGACGCAATATGTCGTT+TGG | 0.362028 | 6_4:+72061078 | Msa0995600:CDS |
AAACATATTGGAAGAGGCTT+TGG | 0.373001 | 6_4:+72061933 | Msa0995600:CDS |
CATCAATCCTAATGAGAAAT+CGG | 0.381109 | 6_4:+72060734 | Msa0995600:CDS |
TGCAAGTAGAATTTCATTAT+GGG | 0.387262 | 6_4:-72062106 | None:intergenic |
CGTACTTGGAATGTTATATG+AGG | 0.388936 | 6_4:+72063643 | Msa0995600:CDS |
GGATGAATCTTGCTCATAGA+TGG | 0.390050 | 6_4:-72062085 | None:intergenic |
CGACAAAAGACATCTTTGAT+TGG | 0.390521 | 6_4:+72063406 | Msa0995600:CDS |
GTTGCTTTATAAATCACTCT+TGG | 0.404999 | 6_4:+72062823 | Msa0995600:CDS |
TGCATGTACTCCTCTGTTGT+TGG | 0.418606 | 6_4:-72063315 | None:intergenic |
TAAAGCAACTTCATGTAATC+CGG | 0.421098 | 6_4:-72062809 | None:intergenic |
GGTTCATGGTGAAAACATAT+TGG | 0.429119 | 6_4:+72061921 | Msa0995600:CDS |
ATTGACGCAATATGTCGTTT+GGG | 0.435447 | 6_4:+72061079 | Msa0995600:CDS |
GACAAAAGACATCTTTGATT+GGG | 0.442878 | 6_4:+72063407 | Msa0995600:CDS |
AAAAGAAAATTGACAACGCT+TGG | 0.444020 | 6_4:+72063706 | Msa0995600:CDS |
TTCTGGTCACCTTGAGTCCA+TGG | 0.446304 | 6_4:+72061963 | Msa0995600:CDS |
GCTCCAAAGCCTACATCAAA+AGG | 0.450495 | 6_4:+72062152 | Msa0995600:CDS |
TAGGTGGGATATTAATTGCT+TGG | 0.452782 | 6_4:+72062778 | Msa0995600:intron |
TACGACTTCTTACATTGGAA+TGG | 0.454510 | 6_4:+72063374 | Msa0995600:CDS |
TGCTATACATTGTAGGCTTA+GGG | 0.457944 | 6_4:+72063461 | Msa0995600:CDS |
ATAGTTAGCATTCAGCCATC+TGG | 0.458951 | 6_4:-72063289 | None:intergenic |
TAATGAAATTCTACTTGCAT+TGG | 0.460272 | 6_4:+72062110 | Msa0995600:CDS |
ACGACTTCTTACATTGGAAT+GGG | 0.460983 | 6_4:+72063375 | Msa0995600:CDS |
TTGCAAGAGAAGGACTCAAT+CGG | 0.462800 | 6_4:-72061990 | None:intergenic |
ATCATCAATGTATGATAAAA+CGG | 0.468585 | 6_4:-72062434 | None:intergenic |
GAGCAAGAAATGAAGAAAGA+AGG | 0.470516 | 6_4:+72062863 | Msa0995600:CDS |
GATGATACATATGATGCATA+TGG | 0.472052 | 6_4:+72062451 | Msa0995600:CDS |
GAGGGAATATGATATGAATA+GGG | 0.475500 | 6_4:+72063662 | Msa0995600:CDS |
TTCCTTGCTTGAGAATATTG+AGG | 0.494460 | 6_4:-72062391 | None:intergenic |
CTGTGCTATTTAGGGTGTTG+AGG | 0.502767 | 6_4:+72061209 | Msa0995600:CDS |
TTGAGAACACACGTCAGAAT+AGG | 0.502783 | 6_4:-72063774 | None:intergenic |
GTATGAAGCCTCGCATATGA+TGG | 0.509870 | 6_4:+72061900 | Msa0995600:CDS |
TGGTGAAAACATATTGGAAG+AGG | 0.510576 | 6_4:+72061927 | Msa0995600:CDS |
ATACAGGTGGTGGAAGGAGT+TGG | 0.512387 | 6_4:+72062291 | Msa0995600:intron |
AGGACTCAATCGGGTGGCCA+TGG | 0.512884 | 6_4:-72061980 | None:intergenic |
AGATGTGTTCAACCAATTCA+AGG | 0.513117 | 6_4:+72061819 | Msa0995600:intron |
ACCATAGATTCTGAAGCATA+AGG | 0.518574 | 6_4:-72060813 | None:intergenic |
TAACTTCTTGCCACTAGCCT+AGG | 0.521919 | 6_4:-72062057 | None:intergenic |
TAAGAAGTCGTAGCCAACAC+TGG | 0.522936 | 6_4:-72063363 | None:intergenic |
GCCTCGCATATGATGGTTCA+TGG | 0.524574 | 6_4:+72061907 | Msa0995600:CDS |
AGCCTCAATATTCTCAAGCA+AGG | 0.525283 | 6_4:+72062389 | Msa0995600:CDS |
GTGGGATATTAATTGCTTGG+AGG | 0.529634 | 6_4:+72062781 | Msa0995600:CDS |
TGGCCTCACTCATATAAGCT+TGG | 0.531321 | 6_4:-72063269 | None:intergenic |
CATGGACTTTACGTTTCACC+AGG | 0.534178 | 6_4:+72061235 | Msa0995600:CDS |
ATAGGTAACGGAACTTCAGT+TGG | 0.538099 | 6_4:-72063756 | None:intergenic |
AAACAGTTTGAGCAGAAAAG+AGG | 0.539017 | 6_4:+72063609 | Msa0995600:intron |
AACATTGGTCGTAGATGTTG+AGG | 0.541350 | 6_4:+72061864 | Msa0995600:CDS |
TGCAAGAGAAGGACTCAATC+GGG | 0.546913 | 6_4:-72061989 | None:intergenic |
CTTATATGAGTGAGGCCAGA+TGG | 0.549142 | 6_4:+72063274 | Msa0995600:CDS |
TTTAGGGTGTTGAGGCAACA+TGG | 0.552007 | 6_4:+72061217 | Msa0995600:CDS |
ATCGGGTGGCCATGGACTCA+AGG | 0.566605 | 6_4:-72061972 | None:intergenic |
GTACTTGGAATGTTATATGA+GGG | 0.567173 | 6_4:+72063644 | Msa0995600:CDS |
CAGAAACTTGCCTAGGCTAG+TGG | 0.568355 | 6_4:+72062047 | Msa0995600:CDS |
ATCAAGTGGTTACCCAGTGT+TGG | 0.570889 | 6_4:+72063350 | Msa0995600:CDS |
ATAGCACAGCAAGAGAATGA+AGG | 0.572946 | 6_4:-72061195 | None:intergenic |
CTTTATATACAGGTGGTGGA+AGG | 0.574461 | 6_4:+72062285 | Msa0995600:intron |
AGGAAACTTCAATGAAACAT+TGG | 0.586045 | 6_4:+72061849 | Msa0995600:CDS |
TTGGCTACGACTTCTTACAT+TGG | 0.586299 | 6_4:+72063369 | Msa0995600:CDS |
ACTACTCTATCTCGTGCATA+CGG | 0.590301 | 6_4:-72062331 | None:intergenic |
CACATATCAACAATATCAAG+TGG | 0.594145 | 6_4:+72063336 | Msa0995600:CDS |
GATTTCCACCCTAGCGTTTG+GGG | 0.596026 | 6_4:+72060777 | Msa0995600:CDS |
AATCTCCCCAAACGCTAGGG+TGG | 0.601357 | 6_4:-72060782 | None:intergenic |
AAGAAGTCGTAGCCAACACT+GGG | 0.613680 | 6_4:-72063362 | None:intergenic |
AACCAATTCAAGGACGAGCA+AGG | 0.615624 | 6_4:+72061829 | Msa0995600:CDS |
GGATGAAATTGTGTCAAGTG+AGG | 0.624618 | 6_4:+72063482 | Msa0995600:CDS |
ACATTGGTCGTAGATGTTGA+GGG | 0.633793 | 6_4:+72061865 | Msa0995600:CDS |
CTCTACGCAGAAACTTGCCT+AGG | 0.636868 | 6_4:+72062040 | Msa0995600:CDS |
ACCATGAACCATCATATGCG+AGG | 0.638484 | 6_4:-72061908 | None:intergenic |
AATCCAAGCTTATATGAGTG+AGG | 0.644710 | 6_4:+72063266 | Msa0995600:CDS |
ACACACGTCAGAATAGGTAA+CGG | 0.688917 | 6_4:-72063768 | None:intergenic |
AAGAGAAGGACTCAATCGGG+TGG | 0.695745 | 6_4:-72061986 | None:intergenic |
TAACTATATACCAACAACAG+AGG | 0.703519 | 6_4:+72063305 | Msa0995600:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CATTTTTTATGTTTTTAATT+TGG | + | chr6_4:72061291-72061310 | Msa0995600:intron | 10.0% |
!! | GAAAAAAAATTACATAAAAT+AGG | + | chr6_4:72061485-72061504 | Msa0995600:intron | 10.0% |
!! | TAATTAAAAGAGAATAATAT+AGG | - | chr6_4:72061538-72061557 | None:intergenic | 10.0% |
!! | TGATTATATAGTAATATTAA+TGG | + | chr6_4:72061616-72061635 | Msa0995600:intron | 10.0% |
!!! | AAAAAAAGTTCTTATTTAAT+AGG | - | chr6_4:72061656-72061675 | None:intergenic | 10.0% |
!! | TAATATGAATGTCTAAAAAA+TGG | + | chr6_4:72061416-72061435 | Msa0995600:intron | 15.0% |
!!! | ATTGTTGTTTAATATTATTG+TGG | + | chr6_4:72061778-72061797 | Msa0995600:intron | 15.0% |
!! | ATAAAGACAAAAAATAGTAT+AGG | - | chr6_4:72062271-72062290 | None:intergenic | 15.0% |
!!! | TATTTTTTGTCTTTATATAC+AGG | + | chr6_4:72062275-72062294 | Msa0995600:intron | 15.0% |
!!! | TTGCAATCAAAATTATTTTT+AGG | + | chr6_4:72062759-72062778 | Msa0995600:intron | 15.0% |
!!! | AATCAAAATTATTTTTAGGT+GGG | + | chr6_4:72062763-72062782 | Msa0995600:intron | 15.0% |
!! | TTAACATCATTTAATTACAT+AGG | + | chr6_4:72063177-72063196 | Msa0995600:intron | 15.0% |
!!! | TTAATTACATAGGTTTTTTT+TGG | + | chr6_4:72063187-72063206 | Msa0995600:intron | 15.0% |
!!! | AATTCTCTTTTTACTAAAAG+TGG | - | chr6_4:72061446-72061465 | None:intergenic | 20.0% |
!! | AATATTAATGGTATACATGT+AGG | + | chr6_4:72061628-72061647 | Msa0995600:intron | 20.0% |
!! | ATCATCAATGTATGATAAAA+CGG | - | chr6_4:72062437-72062456 | None:intergenic | 20.0% |
!!! | TGAATTAGAACTTTTTACAA+AGG | + | chr6_4:72062483-72062502 | Msa0995600:CDS | 20.0% |
!!! | ATTGTTTTATCTCTAAAGTT+TGG | - | chr6_4:72062560-72062579 | None:intergenic | 20.0% |
!! | TTCTTTAAACAATAGAGTAA+TGG | + | chr6_4:72062730-72062749 | Msa0995600:intron | 20.0% |
!!! | CAATCAAAATTATTTTTAGG+TGG | + | chr6_4:72062762-72062781 | Msa0995600:intron | 20.0% |
!! | TCGTAGAATTAATATTACAA+AGG | - | chr6_4:72063094-72063113 | None:intergenic | 20.0% |
!!! | TATCTTGACATTTTAATTAG+TGG | + | chr6_4:72063120-72063139 | Msa0995600:intron | 20.0% |
!! | CATATGAAATAAATGTTAAC+AGG | - | chr6_4:72063220-72063239 | None:intergenic | 20.0% |
!! | CTGTTAACATTTATTTCATA+TGG | + | chr6_4:72063218-72063237 | Msa0995600:intron | 20.0% |
! | AATTCTTTAAATCAACAGCA+AGG | + | chr6_4:72060840-72060859 | Msa0995600:intron | 25.0% |
!!! | TTTTAGTTGATCAATTTGTG+CGG | - | chr6_4:72061017-72061036 | None:intergenic | 25.0% |
!! | AGACGAAATTAATCAAGTTT+TGG | + | chr6_4:72061120-72061139 | Msa0995600:CDS | 25.0% |
! | TACAAGAGTTATGTTCAAAA+TGG | + | chr6_4:72061151-72061170 | Msa0995600:CDS | 25.0% |
!! | TAAGTTGAGATATATATACC+TGG | - | chr6_4:72061256-72061275 | None:intergenic | 25.0% |
! | TTGAGTAAAACAAATTAGAC+AGG | + | chr6_4:72061322-72061341 | Msa0995600:intron | 25.0% |
!! | GTAATATTTGACTTTGTCAT+GGG | + | chr6_4:72061387-72061406 | Msa0995600:intron | 25.0% |
! | TGCAAGTAGAATTTCATTAT+GGG | - | chr6_4:72062109-72062128 | None:intergenic | 25.0% |
! | ATGCAAGTAGAATTTCATTA+TGG | - | chr6_4:72062110-72062129 | None:intergenic | 25.0% |
! | TAATGAAATTCTACTTGCAT+TGG | + | chr6_4:72062110-72062129 | Msa0995600:CDS | 25.0% |
!! | TTTTTGTCTTTATATACAGG+TGG | + | chr6_4:72062278-72062297 | Msa0995600:intron | 25.0% |
!! | TTTTTACAAAGGCAATTGAA+AGG | + | chr6_4:72062494-72062513 | Msa0995600:CDS | 25.0% |
!!! | ACTCTTACTTCTTTTAAGAA+GGG | - | chr6_4:72062908-72062927 | None:intergenic | 25.0% |
!!! | AACTCTTACTTCTTTTAAGA+AGG | - | chr6_4:72062909-72062928 | None:intergenic | 25.0% |
! | TTCAAAAAACTTATTGTCCA+TGG | + | chr6_4:72063009-72063028 | Msa0995600:intron | 25.0% |
CATCAATCCTAATGAGAAAT+CGG | + | chr6_4:72060734-72060753 | Msa0995600:CDS | 30.0% | |
ATGAAAAGTGATTGAAGAGT+AGG | + | chr6_4:72060874-72060893 | Msa0995600:intron | 30.0% | |
! | TTTTGCTAAATGCAGTTCAT+AGG | + | chr6_4:72060958-72060977 | Msa0995600:intron | 30.0% |
!!! | ATCAAGTTGACTTTTTCCAA+GGG | - | chr6_4:72061061-72061080 | None:intergenic | 30.0% |
!!! | AATCAAGTTGACTTTTTCCA+AGG | - | chr6_4:72061062-72061081 | None:intergenic | 30.0% |
! | CGTAATATTTGACTTTGTCA+TGG | + | chr6_4:72061386-72061405 | Msa0995600:intron | 30.0% |
AGGAAACTTCAATGAAACAT+TGG | + | chr6_4:72061849-72061868 | Msa0995600:CDS | 30.0% | |
!! | TTTACTTTTGTTGCAAGAGA+AGG | - | chr6_4:72062003-72062022 | None:intergenic | 30.0% |
! | TTCCAAATTCCTTTTGATGT+AGG | - | chr6_4:72062164-72062183 | None:intergenic | 30.0% |
!!! | AGTAGTAGAATGTTGCTTTT+GGG | + | chr6_4:72062348-72062367 | Msa0995600:CDS | 30.0% |
GATGATACATATGATGCATA+TGG | + | chr6_4:72062451-72062470 | Msa0995600:CDS | 30.0% | |
AATTTATCCATCTTCGATCT+TGG | + | chr6_4:72062642-72062661 | Msa0995600:intron | 30.0% | |
TAAAGCAACTTCATGTAATC+CGG | - | chr6_4:72062812-72062831 | None:intergenic | 30.0% | |
! | GTTGCTTTATAAATCACTCT+TGG | + | chr6_4:72062823-72062842 | Msa0995600:CDS | 30.0% |
!! | CTCTTACTTCTTTTAAGAAG+GGG | - | chr6_4:72062907-72062926 | None:intergenic | 30.0% |
TGTTAAGATGTATCATCATG+AGG | + | chr6_4:72062930-72062949 | Msa0995600:intron | 30.0% | |
AAACTGAGTTCATATAACCA+TGG | - | chr6_4:72063029-72063048 | None:intergenic | 30.0% | |
TAACTATATACCAACAACAG+AGG | + | chr6_4:72063305-72063324 | Msa0995600:CDS | 30.0% | |
CACATATCAACAATATCAAG+TGG | + | chr6_4:72063336-72063355 | Msa0995600:CDS | 30.0% | |
GACAAAAGACATCTTTGATT+GGG | + | chr6_4:72063407-72063426 | Msa0995600:CDS | 30.0% | |
GTACTTGGAATGTTATATGA+GGG | + | chr6_4:72063644-72063663 | Msa0995600:CDS | 30.0% | |
TGAGGGAATATGATATGAAT+AGG | + | chr6_4:72063661-72063680 | Msa0995600:CDS | 30.0% | |
GAGGGAATATGATATGAATA+GGG | + | chr6_4:72063662-72063681 | Msa0995600:CDS | 30.0% | |
! | TTTCTTTTGGCATTCTTGAA+TGG | - | chr6_4:72063694-72063713 | None:intergenic | 30.0% |
!! | AAGCGTTGTCAATTTTCTTT+TGG | - | chr6_4:72063707-72063726 | None:intergenic | 30.0% |
AAAAGAAAATTGACAACGCT+TGG | + | chr6_4:72063706-72063725 | Msa0995600:CDS | 30.0% | |
! | TGCAAAACCGATTTCTCATT+AGG | - | chr6_4:72060744-72060763 | None:intergenic | 35.0% |
TCCTTATGCTTCAGAATCTA+TGG | + | chr6_4:72060812-72060831 | Msa0995600:CDS | 35.0% | |
!! | ACCATAGATTCTGAAGCATA+AGG | - | chr6_4:72060816-72060835 | None:intergenic | 35.0% |
!! | TTCATAGGTTGATCCATAAC+AGG | + | chr6_4:72060973-72060992 | Msa0995600:intron | 35.0% |
TTCATATCAGGTTCCTGTTA+TGG | - | chr6_4:72060989-72061008 | None:intergenic | 35.0% | |
! | ATTGACGCAATATGTCGTTT+GGG | + | chr6_4:72061079-72061098 | Msa0995600:CDS | 35.0% |
!! | ATTCTCTTGCTGTGCTATTT+AGG | + | chr6_4:72061200-72061219 | Msa0995600:CDS | 35.0% |
!! | TTCTCTTGCTGTGCTATTTA+GGG | + | chr6_4:72061201-72061220 | Msa0995600:CDS | 35.0% |
AGATGTGTTCAACCAATTCA+AGG | + | chr6_4:72061819-72061838 | Msa0995600:intron | 35.0% | |
GGTTCATGGTGAAAACATAT+TGG | + | chr6_4:72061921-72061940 | Msa0995600:CDS | 35.0% | |
TGGTGAAAACATATTGGAAG+AGG | + | chr6_4:72061927-72061946 | Msa0995600:CDS | 35.0% | |
AAACATATTGGAAGAGGCTT+TGG | + | chr6_4:72061933-72061952 | Msa0995600:CDS | 35.0% | |
! | TCTACTTGCATTGGCAAAAT+TGG | + | chr6_4:72062119-72062138 | Msa0995600:CDS | 35.0% |
! | ATTCCTTTTGATGTAGGCTT+TGG | - | chr6_4:72062158-72062177 | None:intergenic | 35.0% |
AGCCTACATCAAAAGGAATT+TGG | + | chr6_4:72062159-72062178 | Msa0995600:CDS | 35.0% | |
TTGTCTTTATATACAGGTGG+TGG | + | chr6_4:72062281-72062300 | Msa0995600:intron | 35.0% | |
!!! | GAGTAGTAGAATGTTGCTTT+TGG | + | chr6_4:72062347-72062366 | Msa0995600:CDS | 35.0% |
TTCCTTGCTTGAGAATATTG+AGG | - | chr6_4:72062394-72062413 | None:intergenic | 35.0% | |
! | CTAGTCATCAAGTTTAGAGT+TGG | + | chr6_4:72062598-72062617 | Msa0995600:intron | 35.0% |
TAGGTGGGATATTAATTGCT+TGG | + | chr6_4:72062778-72062797 | Msa0995600:intron | 35.0% | |
GAGCAAGAAATGAAGAAAGA+AGG | + | chr6_4:72062863-72062882 | Msa0995600:CDS | 35.0% | |
!! | TTCTTTTAAGAAGGGGTCAA+GGG | - | chr6_4:72062900-72062919 | None:intergenic | 35.0% |
AATCCAAGCTTATATGAGTG+AGG | + | chr6_4:72063266-72063285 | Msa0995600:CDS | 35.0% | |
TACGACTTCTTACATTGGAA+TGG | + | chr6_4:72063374-72063393 | Msa0995600:CDS | 35.0% | |
ACGACTTCTTACATTGGAAT+GGG | + | chr6_4:72063375-72063394 | Msa0995600:CDS | 35.0% | |
CGACAAAAGACATCTTTGAT+TGG | + | chr6_4:72063406-72063425 | Msa0995600:CDS | 35.0% | |
! | GCAGCAGCATTAACAATTTT+TGG | - | chr6_4:72063444-72063463 | None:intergenic | 35.0% |
TGCTATACATTGTAGGCTTA+GGG | + | chr6_4:72063461-72063480 | Msa0995600:CDS | 35.0% | |
AAACAGTTTGAGCAGAAAAG+AGG | + | chr6_4:72063609-72063628 | Msa0995600:intron | 35.0% | |
CGTACTTGGAATGTTATATG+AGG | + | chr6_4:72063643-72063662 | Msa0995600:CDS | 35.0% | |
AAAAATCTCCCCAAACGCTA+GGG | - | chr6_4:72060788-72060807 | None:intergenic | 40.0% | |
AAAAAATCTCCCCAAACGCT+AGG | - | chr6_4:72060789-72060808 | None:intergenic | 40.0% | |
TGTGCGGCAATATTCATATC+AGG | - | chr6_4:72061001-72061020 | None:intergenic | 40.0% | |
GATTGACGCAATATGTCGTT+TGG | + | chr6_4:72061078-72061097 | Msa0995600:CDS | 40.0% | |
ATAGCACAGCAAGAGAATGA+AGG | - | chr6_4:72061198-72061217 | None:intergenic | 40.0% | |
AACATTGGTCGTAGATGTTG+AGG | + | chr6_4:72061864-72061883 | Msa0995600:CDS | 40.0% | |
ACATTGGTCGTAGATGTTGA+GGG | + | chr6_4:72061865-72061884 | Msa0995600:CDS | 40.0% | |
TTGCAAGAGAAGGACTCAAT+CGG | - | chr6_4:72061993-72062012 | None:intergenic | 40.0% | |
GGATGAATCTTGCTCATAGA+TGG | - | chr6_4:72062088-72062107 | None:intergenic | 40.0% | |
!! | CTTTATATACAGGTGGTGGA+AGG | + | chr6_4:72062285-72062304 | Msa0995600:intron | 40.0% |
ACTACTCTATCTCGTGCATA+CGG | - | chr6_4:72062334-72062353 | None:intergenic | 40.0% | |
AGCCTCAATATTCTCAAGCA+AGG | + | chr6_4:72062389-72062408 | Msa0995600:CDS | 40.0% | |
TTAGCAACCAAGATCGAAGA+TGG | - | chr6_4:72062652-72062671 | None:intergenic | 40.0% | |
GTGGGATATTAATTGCTTGG+AGG | + | chr6_4:72062781-72062800 | Msa0995600:CDS | 40.0% | |
TAATTGCTTGGAGGATCTTC+CGG | + | chr6_4:72062790-72062809 | Msa0995600:CDS | 40.0% | |
!! | CTTCTTTTAAGAAGGGGTCA+AGG | - | chr6_4:72062901-72062920 | None:intergenic | 40.0% |
ATAGTTAGCATTCAGCCATC+TGG | - | chr6_4:72063292-72063311 | None:intergenic | 40.0% | |
TTGGCTACGACTTCTTACAT+TGG | + | chr6_4:72063369-72063388 | Msa0995600:CDS | 40.0% | |
ATGCTGCTGCTATACATTGT+AGG | + | chr6_4:72063454-72063473 | Msa0995600:CDS | 40.0% | |
CTGCTATACATTGTAGGCTT+AGG | + | chr6_4:72063460-72063479 | Msa0995600:CDS | 40.0% | |
GGATGAAATTGTGTCAAGTG+AGG | + | chr6_4:72063482-72063501 | Msa0995600:CDS | 40.0% | |
AGGACATGTTTCTTCGTACT+TGG | + | chr6_4:72063629-72063648 | Msa0995600:CDS | 40.0% | |
!! | ATAGGTAACGGAACTTCAGT+TGG | - | chr6_4:72063759-72063778 | None:intergenic | 40.0% |
ACACACGTCAGAATAGGTAA+CGG | - | chr6_4:72063771-72063790 | None:intergenic | 40.0% | |
TTGAGAACACACGTCAGAAT+AGG | - | chr6_4:72063777-72063796 | None:intergenic | 40.0% | |
!! | CAATCTCTCGCGTTTTATTG+AGG | + | chr6_4:72063794-72063813 | Msa0995600:CDS | 40.0% |
AGATTTCCACCCTAGCGTTT+GGG | + | chr6_4:72060776-72060795 | Msa0995600:CDS | 45.0% | |
CTCAAAAACAGAGAAGCCCT+TGG | + | chr6_4:72061042-72061061 | Msa0995600:CDS | 45.0% | |
!! | CTGTGCTATTTAGGGTGTTG+AGG | + | chr6_4:72061209-72061228 | Msa0995600:CDS | 45.0% |
!! | TTTAGGGTGTTGAGGCAACA+TGG | + | chr6_4:72061217-72061236 | Msa0995600:CDS | 45.0% |
CATGGACTTTACGTTTCACC+AGG | + | chr6_4:72061235-72061254 | Msa0995600:CDS | 45.0% | |
AACCAATTCAAGGACGAGCA+AGG | + | chr6_4:72061829-72061848 | Msa0995600:CDS | 45.0% | |
TTCCTTGCTCGTCCTTGAAT+TGG | - | chr6_4:72061834-72061853 | None:intergenic | 45.0% | |
GTATGAAGCCTCGCATATGA+TGG | + | chr6_4:72061900-72061919 | Msa0995600:CDS | 45.0% | |
ACCATGAACCATCATATGCG+AGG | - | chr6_4:72061911-72061930 | None:intergenic | 45.0% | |
!!! | GAGGCTTTGGCTTTTACTTC+TGG | + | chr6_4:72061946-72061965 | Msa0995600:CDS | 45.0% |
TGCAAGAGAAGGACTCAATC+GGG | - | chr6_4:72061992-72062011 | None:intergenic | 45.0% | |
! | TAACTTCTTGCCACTAGCCT+AGG | - | chr6_4:72062060-72062079 | None:intergenic | 45.0% |
GCTCCAAAGCCTACATCAAA+AGG | + | chr6_4:72062152-72062171 | Msa0995600:CDS | 45.0% | |
TGGCCTCACTCATATAAGCT+TGG | - | chr6_4:72063272-72063291 | None:intergenic | 45.0% | |
CTTATATGAGTGAGGCCAGA+TGG | + | chr6_4:72063274-72063293 | Msa0995600:CDS | 45.0% | |
TGCATGTACTCCTCTGTTGT+TGG | - | chr6_4:72063318-72063337 | None:intergenic | 45.0% | |
ATCAAGTGGTTACCCAGTGT+TGG | + | chr6_4:72063350-72063369 | Msa0995600:CDS | 45.0% | |
AAGAAGTCGTAGCCAACACT+GGG | - | chr6_4:72063365-72063384 | None:intergenic | 45.0% | |
TAAGAAGTCGTAGCCAACAC+TGG | - | chr6_4:72063366-72063385 | None:intergenic | 45.0% | |
!!! | ATTTTATAATAATAAAAGAT+AGG | + | chr6_4:72061463-72061482 | Msa0995600:intron | 5.0% |
CAGATTTCCACCCTAGCGTT+TGG | + | chr6_4:72060775-72060794 | Msa0995600:CDS | 50.0% | |
GATTTCCACCCTAGCGTTTG+GGG | + | chr6_4:72060777-72060796 | Msa0995600:CDS | 50.0% | |
GCCTCGCATATGATGGTTCA+TGG | + | chr6_4:72061907-72061926 | Msa0995600:CDS | 50.0% | |
TTCTGGTCACCTTGAGTCCA+TGG | + | chr6_4:72061963-72061982 | Msa0995600:CDS | 50.0% | |
AAGAGAAGGACTCAATCGGG+TGG | - | chr6_4:72061989-72062008 | None:intergenic | 50.0% | |
CTCTACGCAGAAACTTGCCT+AGG | + | chr6_4:72062040-72062059 | Msa0995600:CDS | 50.0% | |
CAGAAACTTGCCTAGGCTAG+TGG | + | chr6_4:72062047-72062066 | Msa0995600:CDS | 50.0% | |
!! | ATACAGGTGGTGGAAGGAGT+TGG | + | chr6_4:72062291-72062310 | Msa0995600:intron | 50.0% |
AATCTCCCCAAACGCTAGGG+TGG | - | chr6_4:72060785-72060804 | None:intergenic | 55.0% | |
ATCGGGTGGCCATGGACTCA+AGG | - | chr6_4:72061975-72061994 | None:intergenic | 60.0% | |
AGGACTCAATCGGGTGGCCA+TGG | - | chr6_4:72061983-72062002 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 72060717 | 72063839 | 72060717 | ID=Msa0995600;Name=Msa0995600 |
chr6_4 | mRNA | 72060717 | 72063839 | 72060717 | ID=Msa0995600-mRNA-1;Parent=Msa0995600;Name=Msa0995600-mRNA-1;_AED=0.15;_eAED=0.16;_QI=0|0|0|1|1|1|7|0|527 |
chr6_4 | exon | 72060717 | 72060833 | 72060717 | ID=Msa0995600-mRNA-1:exon:13448;Parent=Msa0995600-mRNA-1 |
chr6_4 | exon | 72060995 | 72061256 | 72060995 | ID=Msa0995600-mRNA-1:exon:13449;Parent=Msa0995600-mRNA-1 |
chr6_4 | exon | 72061821 | 72062193 | 72061821 | ID=Msa0995600-mRNA-1:exon:13450;Parent=Msa0995600-mRNA-1 |
chr6_4 | exon | 72062297 | 72062515 | 72062297 | ID=Msa0995600-mRNA-1:exon:13451;Parent=Msa0995600-mRNA-1 |
chr6_4 | exon | 72062781 | 72062919 | 72062781 | ID=Msa0995600-mRNA-1:exon:13452;Parent=Msa0995600-mRNA-1 |
chr6_4 | exon | 72063255 | 72063503 | 72063255 | ID=Msa0995600-mRNA-1:exon:13453;Parent=Msa0995600-mRNA-1 |
chr6_4 | exon | 72063615 | 72063839 | 72063615 | ID=Msa0995600-mRNA-1:exon:13454;Parent=Msa0995600-mRNA-1 |
chr6_4 | CDS | 72060717 | 72060833 | 72060717 | ID=Msa0995600-mRNA-1:cds;Parent=Msa0995600-mRNA-1 |
chr6_4 | CDS | 72060995 | 72061256 | 72060995 | ID=Msa0995600-mRNA-1:cds;Parent=Msa0995600-mRNA-1 |
chr6_4 | CDS | 72061821 | 72062193 | 72061821 | ID=Msa0995600-mRNA-1:cds;Parent=Msa0995600-mRNA-1 |
chr6_4 | CDS | 72062297 | 72062515 | 72062297 | ID=Msa0995600-mRNA-1:cds;Parent=Msa0995600-mRNA-1 |
chr6_4 | CDS | 72062781 | 72062919 | 72062781 | ID=Msa0995600-mRNA-1:cds;Parent=Msa0995600-mRNA-1 |
chr6_4 | CDS | 72063255 | 72063503 | 72063255 | ID=Msa0995600-mRNA-1:cds;Parent=Msa0995600-mRNA-1 |
chr6_4 | CDS | 72063615 | 72063839 | 72063615 | ID=Msa0995600-mRNA-1:cds;Parent=Msa0995600-mRNA-1 |
Gene Sequence |
Protein sequence |