Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922150 | XP_003591640.1 | 83.376 | 391 | 42 | 3 | 1 | 368 | 142 | 532 | 0.0 | 642 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922150 | sp|Q3ECP0|TFB1A_ARATH | 47.607 | 397 | 172 | 6 | 2 | 368 | 146 | 536 | 5.13e-112 | 342 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0452900 | Msa0922150 | 0.809967 | 1.456102e-50 | -8.615850e-47 |
| Msa0267010 | Msa0922150 | 0.809081 | 2.257289e-50 | -8.615850e-47 |
| Msa0564890 | Msa0922150 | 0.811833 | 5.744138e-51 | -8.615850e-47 |
| Msa0885290 | Msa0922150 | 0.814576 | 1.436360e-51 | -8.615850e-47 |
| Msa0888370 | Msa0922150 | 0.807788 | 4.259159e-50 | -8.615850e-47 |
| Msa0899430 | Msa0922150 | 0.805338 | 1.401078e-49 | -8.615850e-47 |
| Msa0922150 | Msa0995760 | 0.800326 | 1.518718e-48 | -8.615850e-47 |
| Msa0922150 | Msa1025360 | 0.807795 | 4.244864e-50 | -8.615850e-47 |
| Msa0922150 | Msa1025370 | 0.817802 | 2.730022e-52 | -8.615850e-47 |
| Msa0922150 | Msa1028230 | 0.807285 | 5.447134e-50 | -8.615850e-47 |
| Msa0922150 | Msa1044830 | 0.814213 | 1.727188e-51 | -8.615850e-47 |
| Msa0922150 | Msa1044840 | 0.808183 | 3.510209e-50 | -8.615850e-47 |
| Msa0922150 | Msa1109440 | 0.822784 | 1.967818e-53 | -8.615850e-47 |
| Msa0922150 | Msa1192640 | 0.811911 | 5.523774e-51 | -8.615850e-47 |
| Msa0922150 | Msa1285930 | 0.816408 | 5.615980e-52 | -8.615850e-47 |
| Msa0922150 | Msa1287800 | 0.810905 | 9.133793e-51 | -8.615850e-47 |
| Msa0922150 | Msa1287810 | 0.807658 | 4.539591e-50 | -8.615850e-47 |
| Msa0922150 | Msa1397580 | 0.813508 | 2.470200e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922150 | MtrunA17_Chr1g0196731 | 83.376 | 391 | 42 | 3 | 1 | 368 | 142 | 532 | 0.0 | 642 |
| Msa0922150 | MtrunA17_Chr6g0479371 | 83.117 | 385 | 48 | 3 | 1 | 368 | 142 | 526 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0922150 | AT1G55750.1 | 47.607 | 397 | 172 | 6 | 2 | 368 | 146 | 536 | 5.21e-113 | 342 |
| Msa0922150 | AT1G55750.6 | 47.607 | 397 | 172 | 6 | 2 | 368 | 146 | 536 | 5.21e-113 | 342 |
| Msa0922150 | AT3G61420.2 | 46.617 | 399 | 177 | 5 | 2 | 370 | 116 | 508 | 2.76e-110 | 333 |
| Msa0922150 | AT3G61420.1 | 46.617 | 399 | 177 | 5 | 2 | 370 | 141 | 533 | 5.35e-110 | 333 |
| Msa0922150 | AT1G55750.3 | 47.436 | 390 | 169 | 6 | 2 | 361 | 146 | 529 | 1.11e-109 | 332 |
| Msa0922150 | AT1G55750.5 | 47.436 | 390 | 169 | 6 | 2 | 361 | 146 | 529 | 1.11e-109 | 332 |
| Msa0922150 | AT1G55750.4 | 47.486 | 358 | 152 | 6 | 2 | 329 | 146 | 497 | 1.87e-97 | 299 |
| Msa0922150 | AT1G55750.2 | 47.486 | 358 | 152 | 6 | 2 | 329 | 146 | 497 | 1.87e-97 | 299 |
Find 70 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTACTGAATCAGAATTT+TGG | 0.128939 | 6_2:-60291113 | Msa0922150:CDS |
| ACATCAAAACTATGGGATTA+AGG | 0.198132 | 6_2:-60290277 | Msa0922150:CDS |
| TAGAATATATTTGTGATATA+TGG | 0.227576 | 6_2:+60290031 | None:intergenic |
| AGGAATTACTGAGGCACTTT+TGG | 0.245951 | 6_2:-60290112 | Msa0922150:CDS |
| CATATCTAACATCAAAACTA+TGG | 0.272962 | 6_2:-60290285 | Msa0922150:CDS |
| GGAGAAAATAAGATGCAATT+TGG | 0.300153 | 6_2:-60290342 | Msa0922150:CDS |
| TTTATCCGACCGTCACTAAT+AGG | 0.301264 | 6_2:+60291000 | None:intergenic |
| AGCACTTCTACTGCAGTTCT+TGG | 0.304600 | 6_2:+60290560 | None:intergenic |
| AGATGATCGAGGTAGATTTC+TGG | 0.317630 | 6_2:-60290916 | Msa0922150:CDS |
| CATCAAAACTATGGGATTAA+GGG | 0.349658 | 6_2:-60290276 | Msa0922150:CDS |
| TTCTAAACTTGAGGAAATAA+AGG | 0.359694 | 6_2:-60290013 | None:intergenic |
| AGATCATTGGGTTTGTAGTC+AGG | 0.384823 | 6_2:-60290132 | Msa0922150:CDS |
| GGTCCAGATTGAAGATCTTC+AGG | 0.390505 | 6_2:-60290474 | Msa0922150:CDS |
| TACACTCATCTTCCTGATCA+TGG | 0.406262 | 6_2:-60290716 | Msa0922150:CDS |
| GGAGAAAACATGAATCTGAT+AGG | 0.408292 | 6_2:-60290532 | Msa0922150:CDS |
| GCAACCTTATGACTCATTAG+AGG | 0.409792 | 6_2:+60290251 | None:intergenic |
| TTAACTTCCGACTTTCATCT+TGG | 0.414184 | 6_2:+60291067 | None:intergenic |
| AGGAGAAACTACTAGATCAT+TGG | 0.416174 | 6_2:-60290145 | Msa0922150:CDS |
| AGTTTCTCCTCAGTTGTGTT+GGG | 0.420031 | 6_2:+60290158 | None:intergenic |
| TTGATACAAAATGGTCCAAA+TGG | 0.421379 | 6_2:+60290437 | None:intergenic |
| AGCACAAAATCTTGTTAGTA+AGG | 0.422360 | 6_2:-60290072 | Msa0922150:CDS |
| GCACAAGATAATCATCCATT+TGG | 0.423724 | 6_2:-60290452 | Msa0922150:CDS |
| TCGATCATCTTACTCGTTTG+AGG | 0.424045 | 6_2:+60290929 | None:intergenic |
| TAGTTTCTCCTCAGTTGTGT+TGG | 0.430109 | 6_2:+60290157 | None:intergenic |
| GTGCCTGAAGATCTTCAATC+TGG | 0.433518 | 6_2:+60290471 | None:intergenic |
| CGAGGATCCTTGATACAAAA+TGG | 0.435971 | 6_2:+60290428 | None:intergenic |
| CGATCATCTTACTCGTTTGA+GGG | 0.472956 | 6_2:+60290930 | None:intergenic |
| CGGAAGTTAAAACAAAGGAT+TGG | 0.476585 | 6_2:-60291054 | Msa0922150:CDS |
| GGAGAAACTACTAGATCATT+GGG | 0.491184 | 6_2:-60290144 | Msa0922150:CDS |
| ATGTTTCCTTGCAACCATCA+TGG | 0.492103 | 6_2:+60290687 | None:intergenic |
| AAGCATCTCAAGCACAACTA+AGG | 0.492288 | 6_2:-60290201 | Msa0922150:CDS |
| CTGCAGTAGAAGTGCTTGCT+CGG | 0.498736 | 6_2:-60290553 | Msa0922150:CDS |
| TCATGGAAGATCCCATGATC+AGG | 0.499144 | 6_2:+60290704 | None:intergenic |
| AAAAGTGAGGTAGTTCTTGA+AGG | 0.500111 | 6_2:-60290611 | Msa0922150:CDS |
| TCTGCTTCCATGTCTAAAGT+TGG | 0.501426 | 6_2:+60290752 | None:intergenic |
| GGAAGCCTATGGCTCTTTGA+GGG | 0.516237 | 6_2:-60290312 | Msa0922150:CDS |
| TTGGATTCTGAGGAAGCCTA+TGG | 0.518436 | 6_2:-60290323 | Msa0922150:CDS |
| GGATGAGTCCCTAGCCGGTA+AGG | 0.521411 | 6_2:-60290363 | Msa0922150:CDS |
| GAGATATTAGAAAATGAAGC+TGG | 0.522498 | 6_2:-60290797 | Msa0922150:CDS |
| GGATCCTCTAATGAGTCATA+AGG | 0.529922 | 6_2:-60290255 | Msa0922150:CDS |
| ACATGAATCTGATAGGGTTG+TGG | 0.533908 | 6_2:-60290525 | Msa0922150:CDS |
| AAGATGCAATTTGGATTCTG+AGG | 0.534474 | 6_2:-60290333 | Msa0922150:CDS |
| ATATCTAACATCAAAACTAT+GGG | 0.539136 | 6_2:-60290284 | Msa0922150:CDS |
| AGAAAATGAAGCTGGAAAGA+AGG | 0.540978 | 6_2:-60290789 | Msa0922150:CDS |
| AGCTGGAAAGAAGGTTCGAC+GGG | 0.543261 | 6_2:-60290780 | Msa0922150:CDS |
| TTGTGTTGGGTAAAATATCA+AGG | 0.543966 | 6_2:+60290171 | None:intergenic |
| AGGAAGCCTATGGCTCTTTG+AGG | 0.545122 | 6_2:-60290313 | Msa0922150:CDS |
| GAGAAAACATGAATCTGATA+GGG | 0.545122 | 6_2:-60290531 | Msa0922150:CDS |
| ACCTTGGATGAGTCCCTAGC+CGG | 0.550260 | 6_2:-60290368 | Msa0922150:CDS |
| GGACTCCCTCAAAGAGCCAT+AGG | 0.555114 | 6_2:+60290307 | None:intergenic |
| ACCGGCTAGGGACTCATCCA+AGG | 0.555250 | 6_2:+60290367 | None:intergenic |
| ACACTCATCTTCCTGATCAT+GGG | 0.555877 | 6_2:-60290715 | Msa0922150:CDS |
| GATGAGTGTAATCATCTCCT+TGG | 0.564451 | 6_2:+60290729 | None:intergenic |
| ACAAATATATTCTAAACTTG+AGG | 0.565758 | 6_2:-60290022 | Msa0922150:CDS |
| GCGAAACAGAATTTCTAAGA+TGG | 0.572825 | 6_2:-60290495 | Msa0922150:CDS |
| TGCAGCAGCTGCTGAAGATG+AGG | 0.574176 | 6_2:-60290846 | Msa0922150:CDS |
| CTGATAGGGTTGTGGAGGAG+AGG | 0.584685 | 6_2:-60290517 | Msa0922150:CDS |
| GATCTTCCATGATGGTTGCA+AGG | 0.590219 | 6_2:-60290693 | Msa0922150:CDS |
| TGCTCGACCAAGATGAAAGT+CGG | 0.591577 | 6_2:-60291074 | Msa0922150:CDS |
| AAGCTGGAAAGAAGGTTCGA+CGG | 0.617221 | 6_2:-60290781 | Msa0922150:CDS |
| TGAATCTGATAGGGTTGTGG+AGG | 0.618752 | 6_2:-60290522 | Msa0922150:CDS |
| GGTTGATCCAACTTTAGACA+TGG | 0.620145 | 6_2:-60290759 | Msa0922150:CDS |
| GATCATGGGATCTTCCATGA+TGG | 0.628009 | 6_2:-60290701 | Msa0922150:CDS |
| AAAGTCGGAAGTTAAAACAA+AGG | 0.641845 | 6_2:-60291059 | Msa0922150:CDS |
| CAAAACCTATTAGTGACGGT+CGG | 0.648612 | 6_2:-60291005 | Msa0922150:CDS |
| GACACAAAACCTATTAGTGA+CGG | 0.666040 | 6_2:-60291009 | Msa0922150:CDS |
| TTAGACATGGAAGCAGACCA+AGG | 0.701290 | 6_2:-60290746 | Msa0922150:CDS |
| TTTGTAGTCAGGAATTACTG+AGG | 0.714250 | 6_2:-60290121 | Msa0922150:CDS |
| TGAGAATCAAAATAGTCACG+AGG | 0.736285 | 6_2:+60290410 | None:intergenic |
| TCAAACGAGTAAGATGATCG+AGG | 0.736656 | 6_2:-60290927 | Msa0922150:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTTTAGATATAAATA+TGG | - | chr6_2:60290551-60290570 | Msa0922150:CDS | 10.0% |
| !! | AAAAACTTTAGATATAAATA+TGG | - | chr6_2:60290551-60290570 | Msa0922150:CDS | 10.0% |
| !! | TAGAATATATTTGTGATATA+TGG | + | chr6_2:60291111-60291130 | None:intergenic | 15.0% |
| !! | TAGAATATATTTGTGATATA+TGG | + | chr6_2:60291111-60291130 | None:intergenic | 15.0% |
| !!! | AATATCTGATATTTTATCTC+TGG | + | chr6_2:60290187-60290206 | None:intergenic | 20.0% |
| !! | ATATCTAACATCAAAACTAT+GGG | - | chr6_2:60290855-60290874 | Msa0922150:CDS | 20.0% |
| !! | ACAAATATATTCTAAACTTG+AGG | - | chr6_2:60291117-60291136 | Msa0922150:CDS | 20.0% |
| !!! | AATATCTGATATTTTATCTC+TGG | + | chr6_2:60290187-60290206 | None:intergenic | 20.0% |
| !! | ATATCTAACATCAAAACTAT+GGG | - | chr6_2:60290855-60290874 | Msa0922150:CDS | 20.0% |
| !! | ACAAATATATTCTAAACTTG+AGG | - | chr6_2:60291117-60291136 | Msa0922150:CDS | 20.0% |
| !!! | CATAGTTTTGATGTTAGATA+TGG | + | chr6_2:60290856-60290875 | None:intergenic | 25.0% |
| ! | CATATCTAACATCAAAACTA+TGG | - | chr6_2:60290854-60290873 | Msa0922150:CDS | 25.0% |
| !!! | CATAGTTTTGATGTTAGATA+TGG | + | chr6_2:60290856-60290875 | None:intergenic | 25.0% |
| ! | CATATCTAACATCAAAACTA+TGG | - | chr6_2:60290854-60290873 | Msa0922150:CDS | 25.0% |
| ! | AGCTTACTGAATCAGAATTT+TGG | - | chr6_2:60290026-60290045 | Msa0922150:CDS | 30.0% |
| ! | GCTTACTGAATCAGAATTTT+GGG | - | chr6_2:60290027-60290046 | Msa0922150:CDS | 30.0% |
| AAAGTCGGAAGTTAAAACAA+AGG | - | chr6_2:60290080-60290099 | Msa0922150:CDS | 30.0% | |
| ! | CAATAACATTTTCGGTACTA+TGG | + | chr6_2:60290275-60290294 | None:intergenic | 30.0% |
| CTCGTCATCTTTCAAAAAAA+CGG | + | chr6_2:60290325-60290344 | None:intergenic | 30.0% | |
| GAGATATTAGAAAATGAAGC+TGG | - | chr6_2:60290342-60290361 | Msa0922150:CDS | 30.0% | |
| GAGAAAACATGAATCTGATA+GGG | - | chr6_2:60290608-60290627 | Msa0922150:CDS | 30.0% | |
| TTGATACAAAATGGTCCAAA+TGG | + | chr6_2:60290705-60290724 | None:intergenic | 30.0% | |
| ! | ATTTGGACCATTTTGTATCA+AGG | - | chr6_2:60290704-60290723 | Msa0922150:CDS | 30.0% |
| GGAGAAAATAAGATGCAATT+TGG | - | chr6_2:60290797-60290816 | Msa0922150:CDS | 30.0% | |
| ACATCAAAACTATGGGATTA+AGG | - | chr6_2:60290862-60290881 | Msa0922150:CDS | 30.0% | |
| CATCAAAACTATGGGATTAA+GGG | - | chr6_2:60290863-60290882 | Msa0922150:CDS | 30.0% | |
| ! | TGCTTTTAGTGAATTCAGTA+AGG | + | chr6_2:60290923-60290942 | None:intergenic | 30.0% |
| TTGTGTTGGGTAAAATATCA+AGG | + | chr6_2:60290971-60290990 | None:intergenic | 30.0% | |
| AGCACAAAATCTTGTTAGTA+AGG | - | chr6_2:60291067-60291086 | Msa0922150:CDS | 30.0% | |
| ! | AGCTTACTGAATCAGAATTT+TGG | - | chr6_2:60290026-60290045 | Msa0922150:CDS | 30.0% |
| ! | GCTTACTGAATCAGAATTTT+GGG | - | chr6_2:60290027-60290046 | Msa0922150:CDS | 30.0% |
| AAAGTCGGAAGTTAAAACAA+AGG | - | chr6_2:60290080-60290099 | Msa0922150:CDS | 30.0% | |
| ! | CAATAACATTTTCGGTACTA+TGG | + | chr6_2:60290275-60290294 | None:intergenic | 30.0% |
| CTCGTCATCTTTCAAAAAAA+CGG | + | chr6_2:60290325-60290344 | None:intergenic | 30.0% | |
| GAGATATTAGAAAATGAAGC+TGG | - | chr6_2:60290342-60290361 | Msa0922150:CDS | 30.0% | |
| GAGAAAACATGAATCTGATA+GGG | - | chr6_2:60290608-60290627 | Msa0922150:CDS | 30.0% | |
| TTGATACAAAATGGTCCAAA+TGG | + | chr6_2:60290705-60290724 | None:intergenic | 30.0% | |
| ! | ATTTGGACCATTTTGTATCA+AGG | - | chr6_2:60290704-60290723 | Msa0922150:CDS | 30.0% |
| GGAGAAAATAAGATGCAATT+TGG | - | chr6_2:60290797-60290816 | Msa0922150:CDS | 30.0% | |
| ACATCAAAACTATGGGATTA+AGG | - | chr6_2:60290862-60290881 | Msa0922150:CDS | 30.0% | |
| CATCAAAACTATGGGATTAA+GGG | - | chr6_2:60290863-60290882 | Msa0922150:CDS | 30.0% | |
| ! | TGCTTTTAGTGAATTCAGTA+AGG | + | chr6_2:60290923-60290942 | None:intergenic | 30.0% |
| TTGTGTTGGGTAAAATATCA+AGG | + | chr6_2:60290971-60290990 | None:intergenic | 30.0% | |
| AGCACAAAATCTTGTTAGTA+AGG | - | chr6_2:60291067-60291086 | Msa0922150:CDS | 30.0% | |
| TTAACTTCCGACTTTCATCT+TGG | + | chr6_2:60290075-60290094 | None:intergenic | 35.0% | |
| CGGAAGTTAAAACAAAGGAT+TGG | - | chr6_2:60290085-60290104 | Msa0922150:CDS | 35.0% | |
| GACACAAAACCTATTAGTGA+CGG | - | chr6_2:60290130-60290149 | Msa0922150:CDS | 35.0% | |
| ! | AGCTGCTGCAATAACATTTT+CGG | + | chr6_2:60290283-60290302 | None:intergenic | 35.0% |
| AGAAAATGAAGCTGGAAAGA+AGG | - | chr6_2:60290350-60290369 | Msa0922150:CDS | 35.0% | |
| AGATCTCAACAGAAAAAGTG+AGG | - | chr6_2:60290515-60290534 | Msa0922150:CDS | 35.0% | |
| AAAAGTGAGGTAGTTCTTGA+AGG | - | chr6_2:60290528-60290547 | Msa0922150:CDS | 35.0% | |
| GGAGAAAACATGAATCTGAT+AGG | - | chr6_2:60290607-60290626 | Msa0922150:CDS | 35.0% | |
| ! | GCGAAACAGAATTTCTAAGA+TGG | - | chr6_2:60290644-60290663 | Msa0922150:CDS | 35.0% |
| GCACAAGATAATCATCCATT+TGG | - | chr6_2:60290687-60290706 | Msa0922150:CDS | 35.0% | |
| TGAGAATCAAAATAGTCACG+AGG | + | chr6_2:60290732-60290751 | None:intergenic | 35.0% | |
| !!! | GCATCTTATTTTCTCCTTAC+CGG | + | chr6_2:60290793-60290812 | None:intergenic | 35.0% |
| AAGATGCAATTTGGATTCTG+AGG | - | chr6_2:60290806-60290825 | Msa0922150:CDS | 35.0% | |
| !!! | GAGTCATAAGGTTGCTTTTA+AGG | - | chr6_2:60290896-60290915 | Msa0922150:CDS | 35.0% |
| ! | TATTTTACCCAACACAACTG+AGG | - | chr6_2:60290974-60290993 | Msa0922150:CDS | 35.0% |
| AGGAGAAACTACTAGATCAT+TGG | - | chr6_2:60290994-60291013 | Msa0922150:CDS | 35.0% | |
| GGAGAAACTACTAGATCATT+GGG | - | chr6_2:60290995-60291014 | Msa0922150:CDS | 35.0% | |
| TTTGTAGTCAGGAATTACTG+AGG | - | chr6_2:60291018-60291037 | Msa0922150:CDS | 35.0% | |
| TTAACTTCCGACTTTCATCT+TGG | + | chr6_2:60290075-60290094 | None:intergenic | 35.0% | |
| CGGAAGTTAAAACAAAGGAT+TGG | - | chr6_2:60290085-60290104 | Msa0922150:CDS | 35.0% | |
| GACACAAAACCTATTAGTGA+CGG | - | chr6_2:60290130-60290149 | Msa0922150:CDS | 35.0% | |
| ! | AGCTGCTGCAATAACATTTT+CGG | + | chr6_2:60290283-60290302 | None:intergenic | 35.0% |
| AGAAAATGAAGCTGGAAAGA+AGG | - | chr6_2:60290350-60290369 | Msa0922150:CDS | 35.0% | |
| AGATCTCAACAGAAAAAGTG+AGG | - | chr6_2:60290515-60290534 | Msa0922150:CDS | 35.0% | |
| AAAAGTGAGGTAGTTCTTGA+AGG | - | chr6_2:60290528-60290547 | Msa0922150:CDS | 35.0% | |
| GGAGAAAACATGAATCTGAT+AGG | - | chr6_2:60290607-60290626 | Msa0922150:CDS | 35.0% | |
| ! | GCGAAACAGAATTTCTAAGA+TGG | - | chr6_2:60290644-60290663 | Msa0922150:CDS | 35.0% |
| GCACAAGATAATCATCCATT+TGG | - | chr6_2:60290687-60290706 | Msa0922150:CDS | 35.0% | |
| TGAGAATCAAAATAGTCACG+AGG | + | chr6_2:60290732-60290751 | None:intergenic | 35.0% | |
| !!! | GCATCTTATTTTCTCCTTAC+CGG | + | chr6_2:60290793-60290812 | None:intergenic | 35.0% |
| AAGATGCAATTTGGATTCTG+AGG | - | chr6_2:60290806-60290825 | Msa0922150:CDS | 35.0% | |
| !!! | GAGTCATAAGGTTGCTTTTA+AGG | - | chr6_2:60290896-60290915 | Msa0922150:CDS | 35.0% |
| ! | TATTTTACCCAACACAACTG+AGG | - | chr6_2:60290974-60290993 | Msa0922150:CDS | 35.0% |
| AGGAGAAACTACTAGATCAT+TGG | - | chr6_2:60290994-60291013 | Msa0922150:CDS | 35.0% | |
| GGAGAAACTACTAGATCATT+GGG | - | chr6_2:60290995-60291014 | Msa0922150:CDS | 35.0% | |
| TTTGTAGTCAGGAATTACTG+AGG | - | chr6_2:60291018-60291037 | Msa0922150:CDS | 35.0% | |
| CAAAACCTATTAGTGACGGT+CGG | - | chr6_2:60290134-60290153 | Msa0922150:CDS | 40.0% | |
| TTTATCCGACCGTCACTAAT+AGG | + | chr6_2:60290142-60290161 | None:intergenic | 40.0% | |
| CGATCATCTTACTCGTTTGA+GGG | + | chr6_2:60290212-60290231 | None:intergenic | 40.0% | |
| TCGATCATCTTACTCGTTTG+AGG | + | chr6_2:60290213-60290232 | None:intergenic | 40.0% | |
| TCAAACGAGTAAGATGATCG+AGG | - | chr6_2:60290212-60290231 | Msa0922150:CDS | 40.0% | |
| AGATGATCGAGGTAGATTTC+TGG | - | chr6_2:60290223-60290242 | Msa0922150:CDS | 40.0% | |
| GGTTGATCCAACTTTAGACA+TGG | - | chr6_2:60290380-60290399 | Msa0922150:CDS | 40.0% | |
| ! | TCTGCTTCCATGTCTAAAGT+TGG | + | chr6_2:60290390-60290409 | None:intergenic | 40.0% |
| GATGAGTGTAATCATCTCCT+TGG | + | chr6_2:60290413-60290432 | None:intergenic | 40.0% | |
| TACACTCATCTTCCTGATCA+TGG | - | chr6_2:60290423-60290442 | Msa0922150:CDS | 40.0% | |
| ACACTCATCTTCCTGATCAT+GGG | - | chr6_2:60290424-60290443 | Msa0922150:CDS | 40.0% | |
| ATGTTTCCTTGCAACCATCA+TGG | + | chr6_2:60290455-60290474 | None:intergenic | 40.0% | |
| ACATGAATCTGATAGGGTTG+TGG | - | chr6_2:60290614-60290633 | Msa0922150:CDS | 40.0% | |
| CGAGGATCCTTGATACAAAA+TGG | + | chr6_2:60290714-60290733 | None:intergenic | 40.0% | |
| AGCTAACGCAGTAAAAACCT+TGG | - | chr6_2:60290755-60290774 | Msa0922150:CDS | 40.0% | |
| !! | TATTTTCTCCTTACCGGCTA+GGG | + | chr6_2:60290787-60290806 | None:intergenic | 40.0% |
| !! | TTATTTTCTCCTTACCGGCT+AGG | + | chr6_2:60290788-60290807 | None:intergenic | 40.0% |
| GGATCCTCTAATGAGTCATA+AGG | - | chr6_2:60290884-60290903 | Msa0922150:CDS | 40.0% | |
| GCAACCTTATGACTCATTAG+AGG | + | chr6_2:60290891-60290910 | None:intergenic | 40.0% | |
| AAGCATCTCAAGCACAACTA+AGG | - | chr6_2:60290938-60290957 | Msa0922150:intron | 40.0% | |
| AGTTTCTCCTCAGTTGTGTT+GGG | + | chr6_2:60290984-60291003 | None:intergenic | 40.0% | |
| TAGTTTCTCCTCAGTTGTGT+TGG | + | chr6_2:60290985-60291004 | None:intergenic | 40.0% | |
| AGATCATTGGGTTTGTAGTC+AGG | - | chr6_2:60291007-60291026 | Msa0922150:CDS | 40.0% | |
| !! | AGGAATTACTGAGGCACTTT+TGG | - | chr6_2:60291027-60291046 | Msa0922150:CDS | 40.0% |
| CAAAACCTATTAGTGACGGT+CGG | - | chr6_2:60290134-60290153 | Msa0922150:CDS | 40.0% | |
| TTTATCCGACCGTCACTAAT+AGG | + | chr6_2:60290142-60290161 | None:intergenic | 40.0% | |
| CGATCATCTTACTCGTTTGA+GGG | + | chr6_2:60290212-60290231 | None:intergenic | 40.0% | |
| TCGATCATCTTACTCGTTTG+AGG | + | chr6_2:60290213-60290232 | None:intergenic | 40.0% | |
| TCAAACGAGTAAGATGATCG+AGG | - | chr6_2:60290212-60290231 | Msa0922150:CDS | 40.0% | |
| AGATGATCGAGGTAGATTTC+TGG | - | chr6_2:60290223-60290242 | Msa0922150:CDS | 40.0% | |
| GGTTGATCCAACTTTAGACA+TGG | - | chr6_2:60290380-60290399 | Msa0922150:CDS | 40.0% | |
| ! | TCTGCTTCCATGTCTAAAGT+TGG | + | chr6_2:60290390-60290409 | None:intergenic | 40.0% |
| GATGAGTGTAATCATCTCCT+TGG | + | chr6_2:60290413-60290432 | None:intergenic | 40.0% | |
| TACACTCATCTTCCTGATCA+TGG | - | chr6_2:60290423-60290442 | Msa0922150:CDS | 40.0% | |
| ACACTCATCTTCCTGATCAT+GGG | - | chr6_2:60290424-60290443 | Msa0922150:CDS | 40.0% | |
| ATGTTTCCTTGCAACCATCA+TGG | + | chr6_2:60290455-60290474 | None:intergenic | 40.0% | |
| ACATGAATCTGATAGGGTTG+TGG | - | chr6_2:60290614-60290633 | Msa0922150:CDS | 40.0% | |
| CGAGGATCCTTGATACAAAA+TGG | + | chr6_2:60290714-60290733 | None:intergenic | 40.0% | |
| AGCTAACGCAGTAAAAACCT+TGG | - | chr6_2:60290755-60290774 | Msa0922150:CDS | 40.0% | |
| !! | TATTTTCTCCTTACCGGCTA+GGG | + | chr6_2:60290787-60290806 | None:intergenic | 40.0% |
| !! | TTATTTTCTCCTTACCGGCT+AGG | + | chr6_2:60290788-60290807 | None:intergenic | 40.0% |
| GGATCCTCTAATGAGTCATA+AGG | - | chr6_2:60290884-60290903 | Msa0922150:CDS | 40.0% | |
| GCAACCTTATGACTCATTAG+AGG | + | chr6_2:60290891-60290910 | None:intergenic | 40.0% | |
| AAGCATCTCAAGCACAACTA+AGG | - | chr6_2:60290938-60290957 | Msa0922150:intron | 40.0% | |
| AGTTTCTCCTCAGTTGTGTT+GGG | + | chr6_2:60290984-60291003 | None:intergenic | 40.0% | |
| TAGTTTCTCCTCAGTTGTGT+TGG | + | chr6_2:60290985-60291004 | None:intergenic | 40.0% | |
| AGATCATTGGGTTTGTAGTC+AGG | - | chr6_2:60291007-60291026 | Msa0922150:CDS | 40.0% | |
| !! | AGGAATTACTGAGGCACTTT+TGG | - | chr6_2:60291027-60291046 | Msa0922150:CDS | 40.0% |
| TGCTCGACCAAGATGAAAGT+CGG | - | chr6_2:60290065-60290084 | Msa0922150:CDS | 45.0% | |
| AAGCTGGAAAGAAGGTTCGA+CGG | - | chr6_2:60290358-60290377 | Msa0922150:CDS | 45.0% | |
| TTAGACATGGAAGCAGACCA+AGG | - | chr6_2:60290393-60290412 | Msa0922150:CDS | 45.0% | |
| TCATGGAAGATCCCATGATC+AGG | + | chr6_2:60290438-60290457 | None:intergenic | 45.0% | |
| GATCATGGGATCTTCCATGA+TGG | - | chr6_2:60290438-60290457 | Msa0922150:CDS | 45.0% | |
| GATCTTCCATGATGGTTGCA+AGG | - | chr6_2:60290446-60290465 | Msa0922150:CDS | 45.0% | |
| AGCACTTCTACTGCAGTTCT+TGG | + | chr6_2:60290582-60290601 | None:intergenic | 45.0% | |
| TGAATCTGATAGGGTTGTGG+AGG | - | chr6_2:60290617-60290636 | Msa0922150:CDS | 45.0% | |
| GGTCCAGATTGAAGATCTTC+AGG | - | chr6_2:60290665-60290684 | Msa0922150:CDS | 45.0% | |
| GTGCCTGAAGATCTTCAATC+TGG | + | chr6_2:60290671-60290690 | None:intergenic | 45.0% | |
| ! | TTGGATTCTGAGGAAGCCTA+TGG | - | chr6_2:60290816-60290835 | Msa0922150:CDS | 45.0% |
| TGCTCGACCAAGATGAAAGT+CGG | - | chr6_2:60290065-60290084 | Msa0922150:CDS | 45.0% | |
| AAGCTGGAAAGAAGGTTCGA+CGG | - | chr6_2:60290358-60290377 | Msa0922150:CDS | 45.0% | |
| TTAGACATGGAAGCAGACCA+AGG | - | chr6_2:60290393-60290412 | Msa0922150:CDS | 45.0% | |
| TCATGGAAGATCCCATGATC+AGG | + | chr6_2:60290438-60290457 | None:intergenic | 45.0% | |
| GATCATGGGATCTTCCATGA+TGG | - | chr6_2:60290438-60290457 | Msa0922150:CDS | 45.0% | |
| GATCTTCCATGATGGTTGCA+AGG | - | chr6_2:60290446-60290465 | Msa0922150:CDS | 45.0% | |
| AGCACTTCTACTGCAGTTCT+TGG | + | chr6_2:60290582-60290601 | None:intergenic | 45.0% | |
| TGAATCTGATAGGGTTGTGG+AGG | - | chr6_2:60290617-60290636 | Msa0922150:CDS | 45.0% | |
| GGTCCAGATTGAAGATCTTC+AGG | - | chr6_2:60290665-60290684 | Msa0922150:CDS | 45.0% | |
| GTGCCTGAAGATCTTCAATC+TGG | + | chr6_2:60290671-60290690 | None:intergenic | 45.0% | |
| ! | TTGGATTCTGAGGAAGCCTA+TGG | - | chr6_2:60290816-60290835 | Msa0922150:CDS | 45.0% |
| AGCTGGAAAGAAGGTTCGAC+GGG | - | chr6_2:60290359-60290378 | Msa0922150:CDS | 50.0% | |
| !! | CTGCAGTAGAAGTGCTTGCT+CGG | - | chr6_2:60290586-60290605 | Msa0922150:CDS | 50.0% |
| AGGAAGCCTATGGCTCTTTG+AGG | - | chr6_2:60290826-60290845 | Msa0922150:CDS | 50.0% | |
| GGAAGCCTATGGCTCTTTGA+GGG | - | chr6_2:60290827-60290846 | Msa0922150:CDS | 50.0% | |
| AGCTGGAAAGAAGGTTCGAC+GGG | - | chr6_2:60290359-60290378 | Msa0922150:CDS | 50.0% | |
| !! | CTGCAGTAGAAGTGCTTGCT+CGG | - | chr6_2:60290586-60290605 | Msa0922150:CDS | 50.0% |
| AGGAAGCCTATGGCTCTTTG+AGG | - | chr6_2:60290826-60290845 | Msa0922150:CDS | 50.0% | |
| GGAAGCCTATGGCTCTTTGA+GGG | - | chr6_2:60290827-60290846 | Msa0922150:CDS | 50.0% | |
| TGCAGCAGCTGCTGAAGATG+AGG | - | chr6_2:60290293-60290312 | Msa0922150:CDS | 55.0% | |
| CTGATAGGGTTGTGGAGGAG+AGG | - | chr6_2:60290622-60290641 | Msa0922150:CDS | 55.0% | |
| ACCTTGGATGAGTCCCTAGC+CGG | - | chr6_2:60290771-60290790 | Msa0922150:CDS | 55.0% | |
| GGACTCCCTCAAAGAGCCAT+AGG | + | chr6_2:60290835-60290854 | None:intergenic | 55.0% | |
| TGCAGCAGCTGCTGAAGATG+AGG | - | chr6_2:60290293-60290312 | Msa0922150:CDS | 55.0% | |
| CTGATAGGGTTGTGGAGGAG+AGG | - | chr6_2:60290622-60290641 | Msa0922150:CDS | 55.0% | |
| ACCTTGGATGAGTCCCTAGC+CGG | - | chr6_2:60290771-60290790 | Msa0922150:CDS | 55.0% | |
| GGACTCCCTCAAAGAGCCAT+AGG | + | chr6_2:60290835-60290854 | None:intergenic | 55.0% | |
| ACCGGCTAGGGACTCATCCA+AGG | + | chr6_2:60290775-60290794 | None:intergenic | 60.0% | |
| GGATGAGTCCCTAGCCGGTA+AGG | - | chr6_2:60290776-60290795 | Msa0922150:CDS | 60.0% | |
| ACCGGCTAGGGACTCATCCA+AGG | + | chr6_2:60290775-60290794 | None:intergenic | 60.0% | |
| GGATGAGTCCCTAGCCGGTA+AGG | - | chr6_2:60290776-60290795 | Msa0922150:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 60290016 | 60291145 | 60290016 | ID=Msa0922150;Name=Msa0922150 |
| chr6_2 | mRNA | 60290016 | 60291145 | 60290016 | ID=Msa0922150-mRNA-1;Parent=Msa0922150;Name=Msa0922150-mRNA-1;_AED=0.09;_eAED=0.11;_QI=0|0|0|1|0|0.5|2|0|374 |
| chr6_2 | exon | 60290942 | 60291145 | 60290942 | ID=Msa0922150-mRNA-1:exon:9236;Parent=Msa0922150-mRNA-1 |
| chr6_2 | exon | 60290016 | 60290936 | 60290016 | ID=Msa0922150-mRNA-1:exon:9235;Parent=Msa0922150-mRNA-1 |
| chr6_2 | CDS | 60290942 | 60291145 | 60290942 | ID=Msa0922150-mRNA-1:cds;Parent=Msa0922150-mRNA-1 |
| chr6_2 | CDS | 60290016 | 60290936 | 60290016 | ID=Msa0922150-mRNA-1:cds;Parent=Msa0922150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
