Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995760 | XP_013452724.1 | 58.263 | 357 | 35 | 4 | 1 | 243 | 224 | 580 | 1.47e-109 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995760 | sp|Q3ECP0|TFB1A_ARATH | 37.158 | 366 | 107 | 8 | 1 | 243 | 226 | 591 | 7.23e-52 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995760 | A0A072UAR7 | 58.263 | 357 | 35 | 4 | 1 | 243 | 224 | 580 | 7.02e-110 | 337 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0745060 | Msa0995760 | 0.806903 | 6.562831e-50 | -8.615850e-47 |
| Msa0825860 | Msa0995760 | 0.812453 | 4.208418e-51 | -8.615850e-47 |
| Msa0414420 | Msa0995760 | 0.807470 | 4.976237e-50 | -8.615850e-47 |
| Msa0452900 | Msa0995760 | 0.809770 | 1.605261e-50 | -8.615850e-47 |
| Msa0995760 | Msa1025360 | 0.802978 | 4.340636e-49 | -8.615850e-47 |
| Msa0995760 | Msa1025370 | 0.801476 | 8.845218e-49 | -8.615850e-47 |
| Msa0995760 | Msa1044840 | 0.804827 | 1.792270e-49 | -8.615850e-47 |
| Msa0995760 | Msa1192640 | 0.803991 | 2.676689e-49 | -8.615850e-47 |
| Msa0995760 | Msa1269670 | 0.804221 | 2.397398e-49 | -8.615850e-47 |
| Msa0995760 | Msa1283330 | 0.801023 | 1.094770e-48 | -8.615850e-47 |
| Msa0995760 | Msa1285930 | 0.811275 | 7.597020e-51 | -8.615850e-47 |
| Msa0995760 | Msa1433120 | 0.804943 | 1.694359e-49 | -8.615850e-47 |
| Msa0342240 | Msa0995760 | 0.800218 | 1.597812e-48 | -8.615850e-47 |
| Msa0564890 | Msa0995760 | 0.819799 | 9.607587e-53 | -8.615850e-47 |
| Msa0865320 | Msa0995760 | 0.810875 | 9.272796e-51 | -8.615850e-47 |
| Msa0922150 | Msa0995760 | 0.800326 | 1.518718e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995760 | MtrunA17_Chr6g0479371 | 58.263 | 357 | 35 | 4 | 1 | 243 | 224 | 580 | 1.35e-113 | 337 |
| Msa0995760 | MtrunA17_Chr1g0196731 | 56.044 | 364 | 39 | 6 | 1 | 243 | 223 | 586 | 1.73e-104 | 314 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0995760 | AT1G55750.1 | 37.158 | 366 | 107 | 8 | 1 | 243 | 226 | 591 | 7.34e-53 | 180 |
| Msa0995760 | AT1G55750.6 | 37.158 | 366 | 107 | 8 | 1 | 243 | 226 | 591 | 7.34e-53 | 180 |
| Msa0995760 | AT3G61420.2 | 36.313 | 358 | 104 | 8 | 1 | 235 | 196 | 552 | 3.93e-50 | 172 |
| Msa0995760 | AT3G61420.1 | 36.313 | 358 | 104 | 8 | 1 | 235 | 221 | 577 | 5.23e-50 | 172 |
| Msa0995760 | AT1G55750.3 | 39.362 | 282 | 92 | 6 | 1 | 203 | 226 | 507 | 9.32e-42 | 149 |
| Msa0995760 | AT1G55750.5 | 39.362 | 282 | 92 | 6 | 1 | 203 | 226 | 507 | 9.32e-42 | 149 |
| Msa0995760 | AT1G55750.4 | 38.971 | 272 | 87 | 6 | 1 | 193 | 226 | 497 | 3.54e-38 | 139 |
| Msa0995760 | AT1G55750.2 | 38.971 | 272 | 87 | 6 | 1 | 193 | 226 | 497 | 3.54e-38 | 139 |
Find 54 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCCTGAAGATCTTCAATT+TGG | 0.215184 | 6_4:-72601539 | None:intergenic |
| AGATGAGCGAGGTAGGTTTC+TGG | 0.308939 | 6_4:+72601088 | None:intergenic |
| ATTAGGAGAAGAAATGATAA+AGG | 0.376421 | 6_4:+72602114 | Msa0995760:CDS |
| CGATCCAATGCAGCAGGCTC+TGG | 0.384095 | 6_4:+72602062 | Msa0995760:CDS |
| GGTCCAAATTGAAGATCTTC+AGG | 0.390505 | 6_4:+72601536 | Msa0995760:CDS |
| GCATCCAGAGCCTGCTGCAT+TGG | 0.396054 | 6_4:-72602066 | None:intergenic |
| TACACTCATCTTCCTGATCA+TGG | 0.406262 | 6_4:+72601297 | Msa0995760:CDS |
| GCAACCTTATGACTCATTAG+AGG | 0.409792 | 6_4:-72601758 | None:intergenic |
| AGGAGAAACTACTAGATCAT+TGG | 0.416174 | 6_4:+72601864 | Msa0995760:CDS |
| AGTTTCTCCTCAGTTGTGTT+GGG | 0.420031 | 6_4:-72601851 | None:intergenic |
| TAGTTTCTCCTCAGTTGTGT+TGG | 0.430109 | 6_4:-72601852 | None:intergenic |
| TTCTACTAAACATAACCATT+AGG | 0.452078 | 6_4:-72602144 | None:intergenic |
| TACATCACGATGCTGACATT+AGG | 0.467767 | 6_4:+72602097 | Msa0995760:CDS |
| GATAAAGGGTCGAAGCCTAA+TGG | 0.469073 | 6_4:+72602129 | Msa0995760:CDS |
| GCGAAACATAATTTCTAAGA+TGG | 0.485839 | 6_4:+72601515 | Msa0995760:CDS |
| AACAGCAAGATCCTCATCTT+CGG | 0.490175 | 6_4:-72601178 | None:intergenic |
| GGAGAAACTACTAGATCATT+GGG | 0.491184 | 6_4:+72601865 | Msa0995760:CDS |
| AAGCATCTCAAGCACAACTA+AGG | 0.492288 | 6_4:+72601808 | Msa0995760:CDS |
| TGCTATTGCAGCAGCTGCTG+AGG | 0.495654 | 6_4:+72601152 | Msa0995760:CDS |
| TCTGCTTCCATGTCTAAAGT+TGG | 0.501426 | 6_4:-72601261 | None:intergenic |
| TTAGGAGAAGAAATGATAAA+GGG | 0.502619 | 6_4:+72602115 | Msa0995760:CDS |
| ACATGAATCTGATGGGGTTG+TGG | 0.503567 | 6_4:+72601485 | Msa0995760:CDS |
| TTGATAGAGAGTGGTGCAAA+TGG | 0.504706 | 6_4:-72601573 | None:intergenic |
| TCACGGAAGATCCCATGATC+AGG | 0.506175 | 6_4:-72601309 | None:intergenic |
| GAACAGCAGAAGTGCTTGCT+CGG | 0.508608 | 6_4:+72601457 | Msa0995760:intron |
| CGGAGAAAACATGAATCTGA+TGG | 0.515296 | 6_4:+72601477 | Msa0995760:CDS |
| ACAGTCGAACCTATGGCAAC+GGG | 0.524199 | 6_4:+72602026 | Msa0995760:CDS |
| ATTTGCACCACTCTCTATCA+AGG | 0.529261 | 6_4:+72601575 | Msa0995760:CDS |
| GGATCCTCTAATGAGTCATA+AGG | 0.529922 | 6_4:+72601754 | Msa0995760:CDS |
| CACAGTCGAACCTATGGCAA+CGG | 0.534268 | 6_4:+72602025 | Msa0995760:CDS |
| TATCTGCACAGTCGAACCTA+TGG | 0.535141 | 6_4:+72602019 | Msa0995760:CDS |
| TGTTGTCGATCCAATGCAGC+AGG | 0.543199 | 6_4:+72602056 | Msa0995760:CDS |
| TGCTGAGGCTGCCGAAGATG+AGG | 0.543877 | 6_4:+72601167 | Msa0995760:CDS |
| TTGTGTTGGGTAAAATATCA+AGG | 0.543966 | 6_4:-72601838 | None:intergenic |
| AGCTCGAAAGAAGGTTCGAC+GGG | 0.544406 | 6_4:+72601233 | Msa0995760:CDS |
| TTGAGAATCAAAATAGTCAC+AGG | 0.549898 | 6_4:-72601600 | None:intergenic |
| AGAAAATGAAGCTCGAAAGA+AGG | 0.550067 | 6_4:+72601224 | Msa0995760:CDS |
| CTGATGGGGTTGTGGAGAAG+AGG | 0.553231 | 6_4:+72601493 | Msa0995760:CDS |
| CAAGGGAAACCCGTTGCCAT+AGG | 0.553889 | 6_4:-72602035 | None:intergenic |
| ACACTCATCTTCCTGATCAT+GGG | 0.555877 | 6_4:+72601298 | Msa0995760:CDS |
| GGAGAAAACATGAATCTGAT+GGG | 0.557964 | 6_4:+72601478 | Msa0995760:CDS |
| GATGAGTGTAATCATCTCCT+TGG | 0.564451 | 6_4:-72601284 | None:intergenic |
| CCGAGTAAGATGAGCGAGGT+AGG | 0.567819 | 6_4:+72601081 | None:intergenic |
| GATCTTCCGTGATGGTTGCA+AGG | 0.576978 | 6_4:+72601320 | Msa0995760:CDS |
| GCTGCATTGGATCGACAACA+AGG | 0.602837 | 6_4:-72602053 | None:intergenic |
| AAGCTCGAAAGAAGGTTCGA+CGG | 0.610355 | 6_4:+72601232 | Msa0995760:CDS |
| GGTTGATCCAACTTTAGACA+TGG | 0.620145 | 6_4:+72601254 | Msa0995760:CDS |
| ACAGGATCCTTGATAGAGAG+TGG | 0.631451 | 6_4:-72601582 | None:intergenic |
| ATGTTTCCTTGCAACCATCA+CGG | 0.635170 | 6_4:-72601326 | None:intergenic |
| GATCATGGGATCTTCCGTGA+TGG | 0.648222 | 6_4:+72601312 | Msa0995760:CDS |
| CTGCATTGGATCGACAACAA+GGG | 0.666215 | 6_4:-72602052 | None:intergenic |
| GAGAAAACATGAATCTGATG+GGG | 0.672708 | 6_4:+72601479 | Msa0995760:CDS |
| TTAGACATGGAAGCAGACCA+AGG | 0.701290 | 6_4:+72601267 | Msa0995760:CDS |
| TGTACCGAGTAAGATGAGCG+AGG | 0.705242 | 6_4:+72601077 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTTTAGATATAGATA+TGG | + | chr6_4:72601425-72601444 | Msa0995760:intron | 15.0% |
| !! | TAGAATATATTTGTGATATA+TGG | - | chr6_4:72601981-72602000 | None:intergenic | 15.0% |
| !! | AAAAACTTTAGATATAGATA+TGG | + | chr6_4:72601425-72601444 | Msa0995760:intron | 15.0% |
| !! | TAGAATATATTTGTGATATA+TGG | - | chr6_4:72601981-72602000 | None:intergenic | 15.0% |
| !! | ATATCTAACATCTAAACTAT+GGG | + | chr6_4:72601725-72601744 | Msa0995760:intron | 20.0% |
| !! | ACAAATATATTCTAAACTTG+AGG | + | chr6_4:72601987-72602006 | Msa0995760:intron | 20.0% |
| !! | ATATCTAACATCTAAACTAT+GGG | + | chr6_4:72601725-72601744 | Msa0995760:intron | 20.0% |
| !! | ACAAATATATTCTAAACTTG+AGG | + | chr6_4:72601987-72602006 | Msa0995760:intron | 20.0% |
| ! | CATAGTTTAGATGTTAGATA+TGG | - | chr6_4:72601726-72601745 | None:intergenic | 25.0% |
| ! | CATATCTAACATCTAAACTA+TGG | + | chr6_4:72601724-72601743 | Msa0995760:intron | 25.0% |
| ! | TTCTAAACTTGAGGAAATAA+AGG | + | chr6_4:72601996-72602015 | Msa0995760:intron | 25.0% |
| ! | ATTAGGAGAAGAAATGATAA+AGG | + | chr6_4:72602114-72602133 | Msa0995760:CDS | 25.0% |
| ! | TTAGGAGAAGAAATGATAAA+GGG | + | chr6_4:72602115-72602134 | Msa0995760:CDS | 25.0% |
| ! | CATAGTTTAGATGTTAGATA+TGG | - | chr6_4:72601726-72601745 | None:intergenic | 25.0% |
| ! | CATATCTAACATCTAAACTA+TGG | + | chr6_4:72601724-72601743 | Msa0995760:intron | 25.0% |
| ! | TTCTAAACTTGAGGAAATAA+AGG | + | chr6_4:72601996-72602015 | Msa0995760:intron | 25.0% |
| ! | ATTAGGAGAAGAAATGATAA+AGG | + | chr6_4:72602114-72602133 | Msa0995760:CDS | 25.0% |
| ! | TTAGGAGAAGAAATGATAAA+GGG | + | chr6_4:72602115-72602134 | Msa0995760:CDS | 25.0% |
| ! | GCGAAACATAATTTCTAAGA+TGG | + | chr6_4:72601515-72601534 | Msa0995760:CDS | 30.0% |
| TTGAGAATCAAAATAGTCAC+AGG | - | chr6_4:72601603-72601622 | None:intergenic | 30.0% | |
| GGAGAAAATAAGATGCAATT+TGG | + | chr6_4:72601667-72601686 | Msa0995760:intron | 30.0% | |
| ACATCTAAACTATGGGATTA+AGG | + | chr6_4:72601732-72601751 | Msa0995760:intron | 30.0% | |
| CATCTAAACTATGGGATTAA+GGG | + | chr6_4:72601733-72601752 | Msa0995760:intron | 30.0% | |
| ! | TGCTTTTAGTGAATTCAGTA+AGG | - | chr6_4:72601793-72601812 | None:intergenic | 30.0% |
| TTGTGTTGGGTAAAATATCA+AGG | - | chr6_4:72601841-72601860 | None:intergenic | 30.0% | |
| AGCACAAAATCTTGTTAGTA+AGG | + | chr6_4:72601937-72601956 | Msa0995760:intron | 30.0% | |
| ! | GCGAAACATAATTTCTAAGA+TGG | + | chr6_4:72601515-72601534 | Msa0995760:CDS | 30.0% |
| TTGAGAATCAAAATAGTCAC+AGG | - | chr6_4:72601603-72601622 | None:intergenic | 30.0% | |
| GGAGAAAATAAGATGCAATT+TGG | + | chr6_4:72601667-72601686 | Msa0995760:intron | 30.0% | |
| ACATCTAAACTATGGGATTA+AGG | + | chr6_4:72601732-72601751 | Msa0995760:intron | 30.0% | |
| CATCTAAACTATGGGATTAA+GGG | + | chr6_4:72601733-72601752 | Msa0995760:intron | 30.0% | |
| ! | TGCTTTTAGTGAATTCAGTA+AGG | - | chr6_4:72601793-72601812 | None:intergenic | 30.0% |
| TTGTGTTGGGTAAAATATCA+AGG | - | chr6_4:72601841-72601860 | None:intergenic | 30.0% | |
| AGCACAAAATCTTGTTAGTA+AGG | + | chr6_4:72601937-72601956 | Msa0995760:intron | 30.0% | |
| ! | CAATAGCATTTTCGGTACTA+TGG | - | chr6_4:72601140-72601159 | None:intergenic | 35.0% |
| AGAAAATGAAGCTCGAAAGA+AGG | + | chr6_4:72601224-72601243 | Msa0995760:CDS | 35.0% | |
| GGAGAAAACATGAATCTGAT+GGG | + | chr6_4:72601478-72601497 | Msa0995760:CDS | 35.0% | |
| GAGAAAACATGAATCTGATG+GGG | + | chr6_4:72601479-72601498 | Msa0995760:CDS | 35.0% | |
| !!! | GCATCTTATTTTCTCCTTAC+CGG | - | chr6_4:72601663-72601682 | None:intergenic | 35.0% |
| !!! | GAGTCATAAGGTTGCTTTTA+AGG | + | chr6_4:72601766-72601785 | Msa0995760:CDS | 35.0% |
| ! | TATTTTACCCAACACAACTG+AGG | + | chr6_4:72601844-72601863 | Msa0995760:CDS | 35.0% |
| AGGAGAAACTACTAGATCAT+TGG | + | chr6_4:72601864-72601883 | Msa0995760:CDS | 35.0% | |
| GGAGAAACTACTAGATCATT+GGG | + | chr6_4:72601865-72601884 | Msa0995760:CDS | 35.0% | |
| TTTGTAGTCAGGAATTACTG+AGG | + | chr6_4:72601888-72601907 | Msa0995760:intron | 35.0% | |
| ! | CAATAGCATTTTCGGTACTA+TGG | - | chr6_4:72601140-72601159 | None:intergenic | 35.0% |
| AGAAAATGAAGCTCGAAAGA+AGG | + | chr6_4:72601224-72601243 | Msa0995760:CDS | 35.0% | |
| GGAGAAAACATGAATCTGAT+GGG | + | chr6_4:72601478-72601497 | Msa0995760:CDS | 35.0% | |
| GAGAAAACATGAATCTGATG+GGG | + | chr6_4:72601479-72601498 | Msa0995760:CDS | 35.0% | |
| !!! | GCATCTTATTTTCTCCTTAC+CGG | - | chr6_4:72601663-72601682 | None:intergenic | 35.0% |
| !!! | GAGTCATAAGGTTGCTTTTA+AGG | + | chr6_4:72601766-72601785 | Msa0995760:CDS | 35.0% |
| ! | TATTTTACCCAACACAACTG+AGG | + | chr6_4:72601844-72601863 | Msa0995760:CDS | 35.0% |
| AGGAGAAACTACTAGATCAT+TGG | + | chr6_4:72601864-72601883 | Msa0995760:CDS | 35.0% | |
| GGAGAAACTACTAGATCATT+GGG | + | chr6_4:72601865-72601884 | Msa0995760:CDS | 35.0% | |
| TTTGTAGTCAGGAATTACTG+AGG | + | chr6_4:72601888-72601907 | Msa0995760:intron | 35.0% | |
| ! | AGCTGCTGCAATAGCATTTT+CGG | - | chr6_4:72601148-72601167 | None:intergenic | 40.0% |
| AACAGCAAGATCCTCATCTT+CGG | - | chr6_4:72601181-72601200 | None:intergenic | 40.0% | |
| GGTTGATCCAACTTTAGACA+TGG | + | chr6_4:72601254-72601273 | Msa0995760:CDS | 40.0% | |
| ! | TCTGCTTCCATGTCTAAAGT+TGG | - | chr6_4:72601264-72601283 | None:intergenic | 40.0% |
| GATGAGTGTAATCATCTCCT+TGG | - | chr6_4:72601287-72601306 | None:intergenic | 40.0% | |
| TACACTCATCTTCCTGATCA+TGG | + | chr6_4:72601297-72601316 | Msa0995760:CDS | 40.0% | |
| ACACTCATCTTCCTGATCAT+GGG | + | chr6_4:72601298-72601317 | Msa0995760:CDS | 40.0% | |
| ATGTTTCCTTGCAACCATCA+CGG | - | chr6_4:72601329-72601348 | None:intergenic | 40.0% | |
| AGATCTCAACAGACAAAGTG+AGG | + | chr6_4:72601389-72601408 | Msa0995760:intron | 40.0% | |
| CGGAGAAAACATGAATCTGA+TGG | + | chr6_4:72601477-72601496 | Msa0995760:CDS | 40.0% | |
| GGTCCAAATTGAAGATCTTC+AGG | + | chr6_4:72601536-72601555 | Msa0995760:CDS | 40.0% | |
| GTGCCTGAAGATCTTCAATT+TGG | - | chr6_4:72601542-72601561 | None:intergenic | 40.0% | |
| TTGATAGAGAGTGGTGCAAA+TGG | - | chr6_4:72601576-72601595 | None:intergenic | 40.0% | |
| ATTTGCACCACTCTCTATCA+AGG | + | chr6_4:72601575-72601594 | Msa0995760:CDS | 40.0% | |
| AGCTAACGCAGTAAAAACCT+TGG | + | chr6_4:72601625-72601644 | Msa0995760:intron | 40.0% | |
| !! | TATTTTCTCCTTACCGGCTA+GGG | - | chr6_4:72601657-72601676 | None:intergenic | 40.0% |
| !! | TTATTTTCTCCTTACCGGCT+AGG | - | chr6_4:72601658-72601677 | None:intergenic | 40.0% |
| AAGATGCAATTTGGATTCCG+AGG | + | chr6_4:72601676-72601695 | Msa0995760:intron | 40.0% | |
| GGATCCTCTAATGAGTCATA+AGG | + | chr6_4:72601754-72601773 | Msa0995760:CDS | 40.0% | |
| GCAACCTTATGACTCATTAG+AGG | - | chr6_4:72601761-72601780 | None:intergenic | 40.0% | |
| AAGCATCTCAAGCACAACTA+AGG | + | chr6_4:72601808-72601827 | Msa0995760:CDS | 40.0% | |
| AGTTTCTCCTCAGTTGTGTT+GGG | - | chr6_4:72601854-72601873 | None:intergenic | 40.0% | |
| TAGTTTCTCCTCAGTTGTGT+TGG | - | chr6_4:72601855-72601874 | None:intergenic | 40.0% | |
| AGATCATTGGGTTTGTAGTC+AGG | + | chr6_4:72601877-72601896 | Msa0995760:intron | 40.0% | |
| !! | AGGAATTACTGAGGCACTTT+TGG | + | chr6_4:72601897-72601916 | Msa0995760:intron | 40.0% |
| TACATCACGATGCTGACATT+AGG | + | chr6_4:72602097-72602116 | Msa0995760:CDS | 40.0% | |
| ! | AGCTGCTGCAATAGCATTTT+CGG | - | chr6_4:72601148-72601167 | None:intergenic | 40.0% |
| AACAGCAAGATCCTCATCTT+CGG | - | chr6_4:72601181-72601200 | None:intergenic | 40.0% | |
| GGTTGATCCAACTTTAGACA+TGG | + | chr6_4:72601254-72601273 | Msa0995760:CDS | 40.0% | |
| ! | TCTGCTTCCATGTCTAAAGT+TGG | - | chr6_4:72601264-72601283 | None:intergenic | 40.0% |
| GATGAGTGTAATCATCTCCT+TGG | - | chr6_4:72601287-72601306 | None:intergenic | 40.0% | |
| TACACTCATCTTCCTGATCA+TGG | + | chr6_4:72601297-72601316 | Msa0995760:CDS | 40.0% | |
| ACACTCATCTTCCTGATCAT+GGG | + | chr6_4:72601298-72601317 | Msa0995760:CDS | 40.0% | |
| ATGTTTCCTTGCAACCATCA+CGG | - | chr6_4:72601329-72601348 | None:intergenic | 40.0% | |
| AGATCTCAACAGACAAAGTG+AGG | + | chr6_4:72601389-72601408 | Msa0995760:intron | 40.0% | |
| CGGAGAAAACATGAATCTGA+TGG | + | chr6_4:72601477-72601496 | Msa0995760:CDS | 40.0% | |
| GGTCCAAATTGAAGATCTTC+AGG | + | chr6_4:72601536-72601555 | Msa0995760:CDS | 40.0% | |
| GTGCCTGAAGATCTTCAATT+TGG | - | chr6_4:72601542-72601561 | None:intergenic | 40.0% | |
| TTGATAGAGAGTGGTGCAAA+TGG | - | chr6_4:72601576-72601595 | None:intergenic | 40.0% | |
| ATTTGCACCACTCTCTATCA+AGG | + | chr6_4:72601575-72601594 | Msa0995760:CDS | 40.0% | |
| AGCTAACGCAGTAAAAACCT+TGG | + | chr6_4:72601625-72601644 | Msa0995760:intron | 40.0% | |
| !! | TATTTTCTCCTTACCGGCTA+GGG | - | chr6_4:72601657-72601676 | None:intergenic | 40.0% |
| !! | TTATTTTCTCCTTACCGGCT+AGG | - | chr6_4:72601658-72601677 | None:intergenic | 40.0% |
| AAGATGCAATTTGGATTCCG+AGG | + | chr6_4:72601676-72601695 | Msa0995760:intron | 40.0% | |
| GGATCCTCTAATGAGTCATA+AGG | + | chr6_4:72601754-72601773 | Msa0995760:CDS | 40.0% | |
| GCAACCTTATGACTCATTAG+AGG | - | chr6_4:72601761-72601780 | None:intergenic | 40.0% | |
| AAGCATCTCAAGCACAACTA+AGG | + | chr6_4:72601808-72601827 | Msa0995760:CDS | 40.0% | |
| AGTTTCTCCTCAGTTGTGTT+GGG | - | chr6_4:72601854-72601873 | None:intergenic | 40.0% | |
| TAGTTTCTCCTCAGTTGTGT+TGG | - | chr6_4:72601855-72601874 | None:intergenic | 40.0% | |
| AGATCATTGGGTTTGTAGTC+AGG | + | chr6_4:72601877-72601896 | Msa0995760:intron | 40.0% | |
| !! | AGGAATTACTGAGGCACTTT+TGG | + | chr6_4:72601897-72601916 | Msa0995760:intron | 40.0% |
| TACATCACGATGCTGACATT+AGG | + | chr6_4:72602097-72602116 | Msa0995760:CDS | 40.0% | |
| AAGCTCGAAAGAAGGTTCGA+CGG | + | chr6_4:72601232-72601251 | Msa0995760:CDS | 45.0% | |
| TTAGACATGGAAGCAGACCA+AGG | + | chr6_4:72601267-72601286 | Msa0995760:CDS | 45.0% | |
| TCTCAACAGACAAAGTGAGG+TGG | + | chr6_4:72601392-72601411 | Msa0995760:intron | 45.0% | |
| CAAAGTGAGGTGGTTCTTGA+AGG | + | chr6_4:72601402-72601421 | Msa0995760:intron | 45.0% | |
| ACATGAATCTGATGGGGTTG+TGG | + | chr6_4:72601485-72601504 | Msa0995760:CDS | 45.0% | |
| ACAGGATCCTTGATAGAGAG+TGG | - | chr6_4:72601585-72601604 | None:intergenic | 45.0% | |
| TATCTGCACAGTCGAACCTA+TGG | + | chr6_4:72602019-72602038 | Msa0995760:CDS | 45.0% | |
| CTGCATTGGATCGACAACAA+GGG | - | chr6_4:72602055-72602074 | None:intergenic | 45.0% | |
| GATAAAGGGTCGAAGCCTAA+TGG | + | chr6_4:72602129-72602148 | Msa0995760:CDS | 45.0% | |
| AAGCTCGAAAGAAGGTTCGA+CGG | + | chr6_4:72601232-72601251 | Msa0995760:CDS | 45.0% | |
| TTAGACATGGAAGCAGACCA+AGG | + | chr6_4:72601267-72601286 | Msa0995760:CDS | 45.0% | |
| TCTCAACAGACAAAGTGAGG+TGG | + | chr6_4:72601392-72601411 | Msa0995760:intron | 45.0% | |
| CAAAGTGAGGTGGTTCTTGA+AGG | + | chr6_4:72601402-72601421 | Msa0995760:intron | 45.0% | |
| ACATGAATCTGATGGGGTTG+TGG | + | chr6_4:72601485-72601504 | Msa0995760:CDS | 45.0% | |
| ACAGGATCCTTGATAGAGAG+TGG | - | chr6_4:72601585-72601604 | None:intergenic | 45.0% | |
| TATCTGCACAGTCGAACCTA+TGG | + | chr6_4:72602019-72602038 | Msa0995760:CDS | 45.0% | |
| CTGCATTGGATCGACAACAA+GGG | - | chr6_4:72602055-72602074 | None:intergenic | 45.0% | |
| GATAAAGGGTCGAAGCCTAA+TGG | + | chr6_4:72602129-72602148 | Msa0995760:CDS | 45.0% | |
| AGCTCGAAAGAAGGTTCGAC+GGG | + | chr6_4:72601233-72601252 | Msa0995760:CDS | 50.0% | |
| TCACGGAAGATCCCATGATC+AGG | - | chr6_4:72601312-72601331 | None:intergenic | 50.0% | |
| GATCATGGGATCTTCCGTGA+TGG | + | chr6_4:72601312-72601331 | Msa0995760:CDS | 50.0% | |
| GATCTTCCGTGATGGTTGCA+AGG | + | chr6_4:72601320-72601339 | Msa0995760:CDS | 50.0% | |
| !! | GAACAGCAGAAGTGCTTGCT+CGG | + | chr6_4:72601457-72601476 | Msa0995760:intron | 50.0% |
| TTGGATTCCGAGGAAGCCTA+TGG | + | chr6_4:72601686-72601705 | Msa0995760:intron | 50.0% | |
| CAAAGAGCCATAGGCTTCCT+CGG | - | chr6_4:72601696-72601715 | None:intergenic | 50.0% | |
| AGGAAGCCTATGGCTCTTTG+AGG | + | chr6_4:72601696-72601715 | Msa0995760:intron | 50.0% | |
| GGAAGCCTATGGCTCTTTGA+GGG | + | chr6_4:72601697-72601716 | Msa0995760:intron | 50.0% | |
| CACAGTCGAACCTATGGCAA+CGG | + | chr6_4:72602025-72602044 | Msa0995760:CDS | 50.0% | |
| ACAGTCGAACCTATGGCAAC+GGG | + | chr6_4:72602026-72602045 | Msa0995760:CDS | 50.0% | |
| GCTGCATTGGATCGACAACA+AGG | - | chr6_4:72602056-72602075 | None:intergenic | 50.0% | |
| TGTTGTCGATCCAATGCAGC+AGG | + | chr6_4:72602056-72602075 | Msa0995760:CDS | 50.0% | |
| AGCTCGAAAGAAGGTTCGAC+GGG | + | chr6_4:72601233-72601252 | Msa0995760:CDS | 50.0% | |
| TCACGGAAGATCCCATGATC+AGG | - | chr6_4:72601312-72601331 | None:intergenic | 50.0% | |
| GATCATGGGATCTTCCGTGA+TGG | + | chr6_4:72601312-72601331 | Msa0995760:CDS | 50.0% | |
| GATCTTCCGTGATGGTTGCA+AGG | + | chr6_4:72601320-72601339 | Msa0995760:CDS | 50.0% | |
| !! | GAACAGCAGAAGTGCTTGCT+CGG | + | chr6_4:72601457-72601476 | Msa0995760:intron | 50.0% |
| TTGGATTCCGAGGAAGCCTA+TGG | + | chr6_4:72601686-72601705 | Msa0995760:intron | 50.0% | |
| CAAAGAGCCATAGGCTTCCT+CGG | - | chr6_4:72601696-72601715 | None:intergenic | 50.0% | |
| AGGAAGCCTATGGCTCTTTG+AGG | + | chr6_4:72601696-72601715 | Msa0995760:intron | 50.0% | |
| GGAAGCCTATGGCTCTTTGA+GGG | + | chr6_4:72601697-72601716 | Msa0995760:intron | 50.0% | |
| CACAGTCGAACCTATGGCAA+CGG | + | chr6_4:72602025-72602044 | Msa0995760:CDS | 50.0% | |
| ACAGTCGAACCTATGGCAAC+GGG | + | chr6_4:72602026-72602045 | Msa0995760:CDS | 50.0% | |
| GCTGCATTGGATCGACAACA+AGG | - | chr6_4:72602056-72602075 | None:intergenic | 50.0% | |
| TGTTGTCGATCCAATGCAGC+AGG | + | chr6_4:72602056-72602075 | Msa0995760:CDS | 50.0% | |
| TGCTATTGCAGCAGCTGCTG+AGG | + | chr6_4:72601152-72601171 | Msa0995760:CDS | 55.0% | |
| CTGATGGGGTTGTGGAGAAG+AGG | + | chr6_4:72601493-72601512 | Msa0995760:CDS | 55.0% | |
| ACCTTGGATGAGTCCCTAGC+CGG | + | chr6_4:72601641-72601660 | Msa0995760:intron | 55.0% | |
| GGACTCCCTCAAAGAGCCAT+AGG | - | chr6_4:72601705-72601724 | None:intergenic | 55.0% | |
| CAAGGGAAACCCGTTGCCAT+AGG | - | chr6_4:72602038-72602057 | None:intergenic | 55.0% | |
| TGCTATTGCAGCAGCTGCTG+AGG | + | chr6_4:72601152-72601171 | Msa0995760:CDS | 55.0% | |
| CTGATGGGGTTGTGGAGAAG+AGG | + | chr6_4:72601493-72601512 | Msa0995760:CDS | 55.0% | |
| ACCTTGGATGAGTCCCTAGC+CGG | + | chr6_4:72601641-72601660 | Msa0995760:intron | 55.0% | |
| GGACTCCCTCAAAGAGCCAT+AGG | - | chr6_4:72601705-72601724 | None:intergenic | 55.0% | |
| CAAGGGAAACCCGTTGCCAT+AGG | - | chr6_4:72602038-72602057 | None:intergenic | 55.0% | |
| TGCTGAGGCTGCCGAAGATG+AGG | + | chr6_4:72601167-72601186 | Msa0995760:CDS | 60.0% | |
| ACCGGCTAGGGACTCATCCA+AGG | - | chr6_4:72601645-72601664 | None:intergenic | 60.0% | |
| GGATGAGTCCCTAGCCGGTA+AGG | + | chr6_4:72601646-72601665 | Msa0995760:intron | 60.0% | |
| CGATCCAATGCAGCAGGCTC+TGG | + | chr6_4:72602062-72602081 | Msa0995760:CDS | 60.0% | |
| GCATCCAGAGCCTGCTGCAT+TGG | - | chr6_4:72602069-72602088 | None:intergenic | 60.0% | |
| TGCTGAGGCTGCCGAAGATG+AGG | + | chr6_4:72601167-72601186 | Msa0995760:CDS | 60.0% | |
| ACCGGCTAGGGACTCATCCA+AGG | - | chr6_4:72601645-72601664 | None:intergenic | 60.0% | |
| GGATGAGTCCCTAGCCGGTA+AGG | + | chr6_4:72601646-72601665 | Msa0995760:intron | 60.0% | |
| CGATCCAATGCAGCAGGCTC+TGG | + | chr6_4:72602062-72602081 | Msa0995760:CDS | 60.0% | |
| GCATCCAGAGCCTGCTGCAT+TGG | - | chr6_4:72602069-72602088 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 72601090 | 72602161 | 72601090 | ID=Msa0995760;Name=Msa0995760 |
| chr6_4 | mRNA | 72601090 | 72602161 | 72601090 | ID=Msa0995760-mRNA-1;Parent=Msa0995760;Name=Msa0995760-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|1|1|4|0|243 |
| chr6_4 | exon | 72601090 | 72601367 | 72601090 | ID=Msa0995760-mRNA-1:exon:13551;Parent=Msa0995760-mRNA-1 |
| chr6_4 | exon | 72601458 | 72601634 | 72601458 | ID=Msa0995760-mRNA-1:exon:13552;Parent=Msa0995760-mRNA-1 |
| chr6_4 | exon | 72601754 | 72601886 | 72601754 | ID=Msa0995760-mRNA-1:exon:13553;Parent=Msa0995760-mRNA-1 |
| chr6_4 | exon | 72602018 | 72602161 | 72602018 | ID=Msa0995760-mRNA-1:exon:13554;Parent=Msa0995760-mRNA-1 |
| chr6_4 | CDS | 72601090 | 72601367 | 72601090 | ID=Msa0995760-mRNA-1:cds;Parent=Msa0995760-mRNA-1 |
| chr6_4 | CDS | 72601458 | 72601634 | 72601458 | ID=Msa0995760-mRNA-1:cds;Parent=Msa0995760-mRNA-1 |
| chr6_4 | CDS | 72601754 | 72601886 | 72601754 | ID=Msa0995760-mRNA-1:cds;Parent=Msa0995760-mRNA-1 |
| chr6_4 | CDS | 72602018 | 72602161 | 72602018 | ID=Msa0995760-mRNA-1:cds;Parent=Msa0995760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
