AlfalfaGEDB | Msa1344330

M. sativa cultivar zhongmu-4 / Msa1344330

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344330	XP_013469983.1	93.805	113	7	0	1	113	1	113	1.21e-72	221

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344330	A0A072VQS7	93.805	113	7	0	1	113	1	113	5.80e-73	221

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011920	Msa1344330	-0.806776	6.980984e-50	-8.615850e-47
Msa0037720	Msa1344330	0.800797	1.217871e-48	-8.615850e-47
Msa0052780	Msa1344330	0.818533	1.864973e-52	-8.615850e-47
Msa0076640	Msa1344330	0.864779	9.512585e-65	-8.615850e-47
Msa0097570	Msa1344330	0.814244	1.700053e-51	-8.615850e-47
Msa0129640	Msa1344330	0.812002	5.276834e-51	-8.615850e-47
Msa0145430	Msa1344330	0.810552	1.089289e-50	-8.615850e-47
Msa0147790	Msa1344330	0.821389	4.143126e-53	-8.615850e-47
Msa0224210	Msa1344330	0.855539	5.894802e-62	-8.615850e-47
Msa0235840	Msa1344330	0.815692	8.113862e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1344330	MtrunA17_Chr1g0207271	93.805	113	7	0	1	113	1	113	1.12e-76	221

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 31 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTCCTGTTGAAGCTG+TGG	0.619031	tig0006806:-54572	None:intergenic
AAAGAAAGAGAAACAATGGA+AGG	0.577762	tig0006806:+54501	None:intergenic
AATGTTGTTGAAATTCTTTG+AGG	0.567996	tig0006806:-54820	None:intergenic
AGAAGCAGCAGCACTGGCAG+TGG	0.577609	tig0006806:-54781	None:intergenic
AGACCTGGTTCTTCTATGAG+AGG	0.610651	tig0006806:-54658	None:intergenic
AGCATAAGAAGCAGCAGCAC+TGG	0.414803	tig0006806:-54787	None:intergenic
AGCTGTCACAATGATGCCTC+TGG	0.415269	tig0006806:-54748	None:intergenic
AGTCAGATTCCAATAACATG+TGG	0.679678	tig0006806:-54623	None:intergenic
ATGAGGTTTCTGCTTCTTGA+TGG	0.301828	tig0006806:-54547	None:intergenic
ATGTTGTTGAAATTCTTTGA+GGG	0.507140	tig0006806:-54819	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTCAGATTCCAATAACATG+TGG	-	tig0006806:54626-54645	None:intergenic	35.0%
TTGGAATCTGACTCATTAAC+AGG	+	tig0006806:54633-54652	Msa1344330:CDS	35.0%
ATGAGGTTTCTGCTTCTTGA+TGG	-	tig0006806:54550-54569	None:intergenic	40.0%
TCGTAGCTACCACATGTTAT+TGG	+	tig0006806:54614-54633	Msa1344330:CDS	40.0%
GAGTTCTTAGAGCACAGATT+TGG	+	tig0006806:54702-54721	Msa1344330:CDS	40.0%
AAAAGCTCCTGTTGAAGCTG+TGG	-	tig0006806:54575-54594	None:intergenic	45.0%
GATCCTCTCATAGAAGAACC+AGG	+	tig0006806:54655-54674	Msa1344330:CDS	45.0%
CTCATCACCACAGCTTCAAC+AGG	+	tig0006806:54565-54584	Msa1344330:CDS	50.0%
GGGTTGCTGAAAATCAGACC+TGG	-	tig0006806:54676-54695	None:intergenic	50.0%
CTGTCACAATGATGCCTCTG+GGG	-	tig0006806:54749-54768	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0006806	gene	54516	54857	54516	ID=Msa1344330;Name=Msa1344330
tig0006806	mRNA	54516	54857	54516	ID=Msa1344330-mRNA-1;Parent=Msa1344330;Name=Msa1344330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|113
tig0006806	exon	54516	54857	54516	ID=Msa1344330-mRNA-1:exon:4440;Parent=Msa1344330-mRNA-1
tig0006806	CDS	54516	54857	54516	ID=Msa1344330-mRNA-1:cds;Parent=Msa1344330-mRNA-1

Gene Sequence	>Msa1344330 ATGGAAGGTTTGATTCCATATCTTATCCAAGCCATCAAGAAGCAGAAACCTCATCACCACAGCTTCAACAGGAGCTTTTCTCATTCTGGGAGCATAAATCGTAGCTACCACATGTTATTGGAATCTGACTCATTAACAGGATCCTCTCATAGAAGAACCAGGTCTGATTTTCAGCAACCCACAACTGAGTTCTTAGAGCACAGATTTGGTAATGATGGAAGTTTGGTTAGCCCCAGAGGCATCATTGTGACAGCTCTGCCTCCGACCACTGCCAGTGCTGCTGCTTCTTATGCTACCCAACCACCCTCAAAGAATTTCAACAACATTCGCAAACACAAATGA
Protein sequence	>Msa1344330 MEGLIPYLIQAIKKQKPHHHSFNRSFSHSGSINRSYHMLLESDSLTGSSHRRTRSDFQQPTTEFLEHRFGNDGSLVSPRGIIVTALPPTTASAAASYATQPPSKNFNNIRKHK*