AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0944520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944520 MtrunA17_Chr6g0461311 98.684 228 1 2 1 228 1 226 2.10e-168 462
Msa0944520 MtrunA17_Chr2g0285161 37.736 159 97 1 42 198 40 198 5.95e-37 129
Msa0944520 MtrunA17_Chr1g0168461 35.211 142 91 1 50 190 31 172 8.41e-30 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0944520 AT5G18110.1 85.417 192 28 0 37 228 30 221 3.43e-126 356
Msa0944520 AT4G18040.1 38.255 149 92 0 50 198 60 208 1.40e-34 123
Msa0944520 AT1G29550.1 35.570 149 96 0 50 198 65 213 1.33e-28 108
Msa0944520 AT1G29590.1 34.228 149 98 0 50 198 65 213 4.40e-28 107
Msa0944520 AT5G35620.3 30.601 183 118 4 39 216 15 193 1.01e-24 97.1
Msa0944520 AT5G35620.1 30.601 183 118 4 39 216 15 193 1.01e-24 97.1
Msa0944520 AT5G35620.2 31.613 155 99 3 39 188 15 167 1.70e-23 93.2

Find 69 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATGTTGTTGGGTGTTTC+AGG 0.113874 6_3:-21455543 Msa0944520:three_prime_UTR
GTTCACAGGTTGAAGGATTT+TGG 0.154611 6_3:-21457733 Msa0944520:intron
AATCTATCTTTCCATTATTA+TGG 0.205403 6_3:-21455269 Msa0944520:three_prime_UTR
AAGAAGGAATCCGTCCTTTA+TGG 0.219971 6_3:-21457646 Msa0944520:CDS
AGCTGGTCTTCACCCTCTTC+AGG 0.285797 6_3:-21460195 Msa0944520:intron
CTAACTGCAATGGTGGAAAA+TGG 0.299336 6_3:-21457471 Msa0944520:CDS
TGCGAGACAATTCATCTTAC+AGG 0.303636 6_3:-21455672 Msa0944520:CDS
GTGGGTGACCAATTGGATTA+TGG 0.334671 6_3:-21455956 Msa0944520:CDS
TATGATTGGTTTCGAATTCC+AGG 0.339307 6_3:+21457876 None:intergenic
ATGGATTATACGATTCAAAA+AGG 0.339986 6_3:-21457452 Msa0944520:CDS
AATCAGAGGAATCGACAATT+TGG 0.345426 6_3:+21460267 None:intergenic
TGCCTTGGTGGGTGACCAAT+TGG 0.355029 6_3:-21455963 Msa0944520:CDS
ACCAGAGCAAATTTGTGTTT+TGG 0.356886 6_3:-21457914 Msa0944520:intron
GCTACAAGAGCAATGTAATA+TGG 0.360365 6_3:+21455344 None:intergenic
TGATGTTATCCTCGTATGAT+TGG 0.373956 6_3:+21457862 None:intergenic
ACGTTAATATACCATAATAA+TGG 0.380785 6_3:+21455258 None:intergenic
GCAATGTAATATGGATGAAA+AGG 0.388745 6_3:+21455353 None:intergenic
CTGAAACACCCAACAACATT+AGG 0.389263 6_3:+21455544 None:intergenic
GCTTCCTCACGGCTATGTTA+TGG 0.396161 6_3:-21455719 Msa0944520:CDS
TGGTATATTAACGTTTGTAC+TGG 0.409102 6_3:-21455249 Msa0944520:three_prime_UTR
AGATGCAAATCTGTTGGAAT+AGG 0.415770 6_3:+21457674 None:intergenic
TTGAAAAGATGCAAATCTGT+TGG 0.417946 6_3:+21457668 None:intergenic
AATGCAGGTGCTTGCCTTGG+TGG 0.418746 6_3:-21455975 Msa0944520:intron
AGAAGGAATCCGTCCTTTAT+GGG 0.421115 6_3:-21457645 Msa0944520:CDS
CATAGCCGTGAGGAAGCTTT+AGG 0.427935 6_3:+21455725 None:intergenic
TTCACGAGATTGTCGTTCTT+CGG 0.440058 6_3:+21460223 None:intergenic
TCGCAATGCCTCTGATCATC+AGG 0.442213 6_3:-21455870 Msa0944520:intron
TGTTATCACCATAATCCAAT+TGG 0.452588 6_3:+21455948 None:intergenic
ACGAGGACATAGTGAGTGTC+TGG 0.454336 6_3:-21455895 Msa0944520:CDS
TAAGTATCTACCTCCCATAA+AGG 0.467917 6_3:+21457632 None:intergenic
TGGTACACTCGTCGGGTACC+TGG 0.476680 6_3:-21457894 Msa0944520:CDS
CAATGTAATATGGATGAAAA+GGG 0.479770 6_3:+21455354 None:intergenic
GTTGTTGGGTGTTTCAGGAC+TGG 0.486770 6_3:-21455538 Msa0944520:three_prime_UTR
TGGACTAGAATGAAAGAGAG+AGG 0.496051 6_3:+21460404 None:intergenic
GGTTGCGACCAATGTTCAAA+AGG 0.501797 6_3:+21455565 None:intergenic
GATTATGGTGATAACATTTG+TGG 0.503544 6_3:-21455941 Msa0944520:CDS
CCAAATGCAGGTGCTTGCCT+TGG 0.504330 6_3:-21455978 Msa0944520:intron
GGTCGCAACCTAATGTTGTT+GGG 0.523424 6_3:-21455552 Msa0944520:three_prime_UTR
GACGTTGTTGTAAGAATCAG+AGG 0.528571 6_3:+21460253 None:intergenic
TGGTCGCAACCTAATGTTGT+TGG 0.535444 6_3:-21455553 Msa0944520:three_prime_UTR
ATGGTATACAATAGCATCAA+GGG 0.540560 6_3:+21455603 None:intergenic
GACTCTGCTAACTGCAATGG+TGG 0.541849 6_3:-21457478 Msa0944520:CDS
TACAGGAACACTTGGTTGAG+AGG 0.543267 6_3:-21455655 Msa0944520:CDS
ATGCAGGTGCTTGCCTTGGT+GGG 0.546695 6_3:-21455974 Msa0944520:intron
TTGTAATGAAGAACCTGAAG+AGG 0.547036 6_3:+21460182 None:intergenic
ATTCATCTTACAGGAACACT+TGG 0.548432 6_3:-21455663 Msa0944520:CDS
TGTGATCCTTTCCTTCAGCA+AGG 0.549560 6_3:+21455378 None:intergenic
GGACTAGAATGAAAGAGAGA+GGG 0.557391 6_3:+21460405 None:intergenic
TATGTTAATTTCGTTACTCG+AGG 0.558299 6_3:-21455469 Msa0944520:three_prime_UTR
AAGGCATCGTCAAGCTGTGA+TGG 0.566478 6_3:+21455584 None:intergenic
GATGGTATACAATAGCATCA+AGG 0.568653 6_3:+21455602 None:intergenic
ACAATAGCATCAAGGGGACT+AGG 0.573856 6_3:+21455610 None:intergenic
CAATCTCGTGAACTCAAAGC+TGG 0.583315 6_3:-21460212 Msa0944520:CDS
GAAGATTGTTGAATTCAGTA+CGG 0.584185 6_3:-21457838 Msa0944520:intron
GTTGGAATAGGCAAGGAAGA+AGG 0.587877 6_3:+21457686 None:intergenic
CAAATCTGTTGGAATAGGCA+AGG 0.608164 6_3:+21457679 None:intergenic
AGGAAGAAGGACGAGCAAGA+TGG 0.610167 6_3:+21457699 None:intergenic
TGTAATGAAGAACCTGAAGA+GGG 0.612336 6_3:+21460183 None:intergenic
AAGGACTCTGCTAACTGCAA+TGG 0.616200 6_3:-21457481 Msa0944520:CDS
ATCCAATTGGTCACCCACCA+AGG 0.621634 6_3:+21455961 None:intergenic
TATCTACCTCCCATAAAGGA+CGG 0.643028 6_3:+21457636 None:intergenic
GATGCCAACCTGATGATCAG+AGG 0.659266 6_3:+21455862 None:intergenic
AGGAATCCGTCCTTTATGGG+AGG 0.678710 6_3:-21457642 Msa0944520:intron
TGGTATACAATAGCATCAAG+GGG 0.683546 6_3:+21455604 None:intergenic
CGTCACCTAAAGCTTCCTCA+CGG 0.685945 6_3:-21455730 Msa0944520:CDS
TCTCGCAGAGAAGCATCATG+CGG 0.719756 6_3:+21455688 None:intergenic
AATTCGAAACCAATCATACG+AGG 0.732933 6_3:-21457871 Msa0944520:CDS
TACTCCATAACATAGCCGTG+AGG 0.757014 6_3:+21455715 None:intergenic
ACTAAGCATTCGTTTCAACG+AGG 0.762117 6_3:-21455912 Msa0944520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAATTTAAAAA+AGG + chr6_3:21457017-21457036 None:intergenic 0.0%
!!! TTATTAATTTGTTTTTTGTT+AGG - chr6_3:21455430-21455449 Msa0944520:three_prime_UTR 10.0%
!!! CAAAATATTTTATTCAAAAT+TGG - chr6_3:21458289-21458308 Msa0944520:intron 10.0%
!! TTTATAATTTATGTTAGTTA+TGG - chr6_3:21459451-21459470 Msa0944520:intron 10.0%
!! AATTGTGACTTTATTATATA+TGG - chr6_3:21455855-21455874 Msa0944520:intron 15.0%
!! ATTGTGACTTTATTATATAT+GGG - chr6_3:21455856-21455875 Msa0944520:intron 15.0%
!! TTTATTATATATGGGATTTA+AGG - chr6_3:21455864-21455883 Msa0944520:intron 15.0%
!! TTATTATATATGGGATTTAA+GGG - chr6_3:21455865-21455884 Msa0944520:intron 15.0%
!! ATCATTCATAAAATAATCTA+TGG + chr6_3:21457136-21457155 None:intergenic 15.0%
!!! TTTTGAAGTTATTCTATTTT+TGG - chr6_3:21457452-21457471 Msa0944520:CDS 15.0%
!!! TTAAAATATGTTTTTGTCTT+CGG + chr6_3:21458500-21458519 None:intergenic 15.0%
!! TTAAGATAAAAATGTAGTAT+AGG - chr6_3:21458739-21458758 Msa0944520:intron 15.0%
!!! ATATTTTTATGACCTTTATT+TGG - chr6_3:21459379-21459398 Msa0944520:intron 15.0%
!!! TAATCCTTTTTTTTTTAATG+TGG - chr6_3:21460277-21460296 Msa0944520:CDS 15.0%
!! TTCTATTGTGACTTTATATA+TGG - chr6_3:21455501-21455520 Msa0944520:three_prime_UTR 20.0%
!! TCTATTGTGACTTTATATAT+GGG - chr6_3:21455502-21455521 Msa0944520:three_prime_UTR 20.0%
!! TTTATATATGGGATTTAAGT+GGG - chr6_3:21455513-21455532 Msa0944520:three_prime_UTR 20.0%
!! TTTGAACTTAAACATGTTAT+AGG - chr6_3:21455709-21455728 Msa0944520:CDS 20.0%
!! CAAATAGATTCTTAAAAGTT+GGG - chr6_3:21455777-21455796 Msa0944520:intron 20.0%
!! TATTATATATGGGATTTAAG+GGG - chr6_3:21455866-21455885 Msa0944520:intron 20.0%
!! TGTGAAATTAAATTAGAACT+TGG - chr6_3:21455890-21455909 Msa0944520:CDS 20.0%
!!! TTCAACAAAAAAGAAGATTT+TGG - chr6_3:21456316-21456335 Msa0944520:intron 20.0%
!! ATCTCAATGAGTTAATATTA+AGG + chr6_3:21456457-21456476 None:intergenic 20.0%
!! TAGTGAAGAAATTAAGATTT+AGG - chr6_3:21457351-21457370 Msa0944520:intron 20.0%
!! AGTGAAGAAATTAAGATTTA+GGG - chr6_3:21457352-21457371 Msa0944520:intron 20.0%
!! TCTTAATGTTTGAATAGTAT+TGG - chr6_3:21457554-21457573 Msa0944520:intron 20.0%
!! CTTAATGTTTGAATAGTATT+GGG - chr6_3:21457555-21457574 Msa0944520:intron 20.0%
!! ATCATAAATGAAGTAATTCA+GGG + chr6_3:21458558-21458577 None:intergenic 20.0%
!! TGGAAATTAAGATATTGTTT+GGG + chr6_3:21458898-21458917 None:intergenic 20.0%
!! ATGGAAATTAAGATATTGTT+TGG + chr6_3:21458899-21458918 None:intergenic 20.0%
!! TTTGGAAGTTAACATAAAAA+AGG - chr6_3:21459329-21459348 Msa0944520:intron 20.0%
!!! AAATGTAATTTTAATCCACA+GGG + chr6_3:21459534-21459553 None:intergenic 20.0%
!! TTCTCCACATTAAAAAAAAA+AGG + chr6_3:21460284-21460303 None:intergenic 20.0%
!! AATCTATCTTTCCATTATTA+TGG - chr6_3:21460309-21460328 Msa0944520:CDS 20.0%
!! ACGTTAATATACCATAATAA+TGG + chr6_3:21460323-21460342 None:intergenic 20.0%
! CTTTATATATGGGATTTAAG+TGG - chr6_3:21455512-21455531 Msa0944520:three_prime_UTR 25.0%
! GCAAATAGATTCTTAAAAGT+TGG - chr6_3:21455776-21455795 Msa0944520:intron 25.0%
!!! TAGGAACATTTTTTATGTGT+GGG - chr6_3:21455803-21455822 Msa0944520:intron 25.0%
! AACTACAAAATGGATCTAAA+TGG + chr6_3:21456093-21456112 None:intergenic 25.0%
! TGGTTAAAGTAACTACAAAA+TGG + chr6_3:21456103-21456122 None:intergenic 25.0%
! CAAAATTGTACATGGAAATT+AGG - chr6_3:21456145-21456164 Msa0944520:intron 25.0%
!! TTTGATTTAATCTGATGTGT+TGG - chr6_3:21456224-21456243 Msa0944520:intron 25.0%
! TTGATTTAATCTGATGTGTT+GGG - chr6_3:21456225-21456244 Msa0944520:intron 25.0%
! CAATATAATAATCCAACCTA+TGG + chr6_3:21456372-21456391 None:intergenic 25.0%
! TAAAGAAATCAGCAGTTTAT+TGG - chr6_3:21456424-21456443 Msa0944520:intron 25.0%
!!! AATGATCAAGTTGAAAGTTT+TGG - chr6_3:21456492-21456511 Msa0944520:intron 25.0%
!!! ATGATCAAGTTGAAAGTTTT+GGG - chr6_3:21456493-21456512 Msa0944520:intron 25.0%
! TTAATTCAAACATGTTGAGT+TGG - chr6_3:21456772-21456791 Msa0944520:intron 25.0%
! TAATTCAAACATGTTGAGTT+GGG - chr6_3:21456773-21456792 Msa0944520:intron 25.0%
! TGGTGAAGAAATTAAGATTT+CGG - chr6_3:21456871-21456890 Msa0944520:intron 25.0%
! GAAAATAAAACAAAACTCCA+AGG + chr6_3:21456995-21457014 None:intergenic 25.0%
!! TTGACCAAATTGAACTTTTT+GGG - chr6_3:21457240-21457259 Msa0944520:intron 25.0%
! TACTAATTCGTATCATAGTT+TGG + chr6_3:21457286-21457305 None:intergenic 25.0%
!! AAGTCAAATTGAAGGATTTT+GGG + chr6_3:21457434-21457453 None:intergenic 25.0%
!! AAAGTCAAATTGAAGGATTT+TGG + chr6_3:21457435-21457454 None:intergenic 25.0%
! AACTTCAAAAGTCAAATTGA+AGG + chr6_3:21457442-21457461 None:intergenic 25.0%
!!! TATTCTATTTTTGGACGAAT+TGG - chr6_3:21457461-21457480 Msa0944520:CDS 25.0%
!!! AATGATATGTTTGCTGTATT+GGG - chr6_3:21457489-21457508 Msa0944520:intron 25.0%
!!! TTTTGGTTGATTTATTGTGT+TGG - chr6_3:21457630-21457649 Msa0944520:intron 25.0%
!!! TGACAATTTTTTTTGTTCAC+AGG - chr6_3:21457831-21457850 Msa0944520:intron 25.0%
! ATTTATGAGTTGTTCTGTTA+TGG - chr6_3:21458007-21458026 Msa0944520:intron 25.0%
! AAAGCAAATTAACCAACATT+TGG + chr6_3:21458055-21458074 None:intergenic 25.0%
!! ATGGATTATACGATTCAAAA+AGG - chr6_3:21458126-21458145 Msa0944520:intron 25.0%
!! TGGTTAGTGAAAATATTTTC+AGG - chr6_3:21458176-21458195 Msa0944520:intron 25.0%
!! ACATTTTTCATAATCATTGC+AGG + chr6_3:21458228-21458247 None:intergenic 25.0%
! CTAGAATATATAAACTGGAA+TGG + chr6_3:21458527-21458546 None:intergenic 25.0%
!!! ACACTCTAGAATATATAAAC+TGG + chr6_3:21458532-21458551 None:intergenic 25.0%
! CATCATAAATGAAGTAATTC+AGG + chr6_3:21458559-21458578 None:intergenic 25.0%
! GCCTGATTTATATATTCATA+TGG - chr6_3:21458578-21458597 Msa0944520:intron 25.0%
! GCCATATGAATATATAAATC+AGG + chr6_3:21458582-21458601 None:intergenic 25.0%
!! TTTTCAGTAACTTCATATAG+AGG + chr6_3:21458686-21458705 None:intergenic 25.0%
! TCAACAATCAACACAAATAA+AGG + chr6_3:21458811-21458830 None:intergenic 25.0%
!!! TTATTTGTGTTGATTGTTGA+AGG - chr6_3:21458811-21458830 Msa0944520:intron 25.0%
!! TTTGGGAAAATGTTTTTCTA+TGG + chr6_3:21458881-21458900 None:intergenic 25.0%
!! AATAGTCTAGTTTCTAAACT+GGG + chr6_3:21459139-21459158 None:intergenic 25.0%
! ATAAAAAAGGAAAACTGTCA+TGG - chr6_3:21459342-21459361 Msa0944520:intron 25.0%
! AACTTAAAAACAGAGCAAAA+AGG + chr6_3:21459433-21459452 None:intergenic 25.0%
!!! GAAATGTAATTTTAATCCAC+AGG + chr6_3:21459535-21459554 None:intergenic 25.0%
!! ACATTTCTGTTGTTTATTGT+TGG - chr6_3:21459548-21459567 Msa0944520:intron 25.0%
! AAAAACCAGAAATGTTATGA+AGG + chr6_3:21459791-21459810 None:intergenic 25.0%
! CAATGTAATATGGATGAAAA+GGG + chr6_3:21460227-21460246 None:intergenic 25.0%
!!! TTTTGGTTCGTTGAGTTTTT+TGG + chr6_3:21455197-21455216 None:intergenic 30.0%
AAAAACTCAACGAACCAAAA+AGG - chr6_3:21455197-21455216 Msa0944520:three_prime_UTR 30.0%
AAAACTCAACGAACCAAAAA+GGG - chr6_3:21455198-21455217 Msa0944520:three_prime_UTR 30.0%
! GGTTTTCAAACAAACAACAA+TGG - chr6_3:21455227-21455246 Msa0944520:three_prime_UTR 30.0%
AAAAATCGTGACTTGATTGA+TGG - chr6_3:21455666-21455685 Msa0944520:CDS 30.0%
AAAATCGTGACTTGATTGAT+GGG - chr6_3:21455667-21455686 Msa0944520:CDS 30.0%
TTGATTGATGGGATTTAAGA+GGG - chr6_3:21455678-21455697 Msa0944520:CDS 30.0%
ATTCTTAAAAGTTGGGAAGT+AGG - chr6_3:21455784-21455803 Msa0944520:intron 30.0%
!!! GTAGGAACATTTTTTATGTG+TGG - chr6_3:21455802-21455821 Msa0944520:intron 30.0%
!!! AGGAACATTTTTTATGTGTG+GGG - chr6_3:21455804-21455823 Msa0944520:intron 30.0%
TGCTATGAAACTTAATGTGT+TGG - chr6_3:21455977-21455996 Msa0944520:intron 30.0%
GCTATGAAACTTAATGTGTT+GGG - chr6_3:21455978-21455997 Msa0944520:intron 30.0%
CTATGAAACTTAATGTGTTG+GGG - chr6_3:21455979-21455998 Msa0944520:intron 30.0%
TCCTAACTTATTCACATGTA+AGG - chr6_3:21456022-21456041 Msa0944520:intron 30.0%
ACCTTACATGTGAATAAGTT+AGG + chr6_3:21456026-21456045 None:intergenic 30.0%
AACCATAGATCAGATTTAAC+AGG - chr6_3:21456118-21456137 Msa0944520:intron 30.0%
ACCATAGATCAGATTTAACA+GGG - chr6_3:21456119-21456138 Msa0944520:intron 30.0%
TGATTTAATCTGATGTGTTG+GGG - chr6_3:21456226-21456245 Msa0944520:intron 30.0%
TGGTGAAAGAAACTACAAAA+TGG + chr6_3:21456352-21456371 None:intergenic 30.0%
TTTGTAGTTTCTTTCACCAT+AGG - chr6_3:21456353-21456372 Msa0944520:intron 30.0%
ATTAACTCATTGAGATGTTG+AGG - chr6_3:21456461-21456480 Msa0944520:intron 30.0%
CTTTGTGTGAAAAGAAAGTT+CGG - chr6_3:21456560-21456579 Msa0944520:intron 30.0%
GATTATGTAACTACATGAGT+CGG + chr6_3:21456689-21456708 None:intergenic 30.0%
! AATGACCACATTGTATGTTT+TGG - chr6_3:21456800-21456819 Msa0944520:intron 30.0%
! ATGACCACATTGTATGTTTT+GGG - chr6_3:21456801-21456820 Msa0944520:intron 30.0%
! AACTTATTGCTCTTTGAAGA+TGG - chr6_3:21456851-21456870 Msa0944520:intron 30.0%
GGTGAAGAAATTAAGATTTC+GGG - chr6_3:21456872-21456891 Msa0944520:intron 30.0%
AAGGTAACAATCAACTTCAA+AGG + chr6_3:21456976-21456995 None:intergenic 30.0%
! TTTGAAGTTGATTGTTACCT+TGG - chr6_3:21456975-21456994 Msa0944520:intron 30.0%
TCAAACATATGAGATTTGAG+TGG - chr6_3:21457042-21457061 Msa0944520:intron 30.0%
CAAACATATGAGATTTGAGT+GGG - chr6_3:21457043-21457062 Msa0944520:intron 30.0%
! GATTTAGATCCACATTTTAG+CGG - chr6_3:21457104-21457123 Msa0944520:intron 30.0%
ATTAACTCATTGACATGTTG+AGG - chr6_3:21457208-21457227 Msa0944520:intron 30.0%
! GTTGACCAAATTGAACTTTT+TGG - chr6_3:21457239-21457258 Msa0944520:intron 30.0%
!!! ATTTAGGGTTGTTTTTGTTG+AGG - chr6_3:21457367-21457386 Msa0944520:intron 30.0%
!! GAATGATATGTTTGCTGTAT+TGG - chr6_3:21457488-21457507 Msa0944520:intron 30.0%
! AATGTTTGAATAGTATTGGG+AGG - chr6_3:21457558-21457577 Msa0944520:intron 30.0%
!! CTCAGTGAATTTTGACATTT+TGG - chr6_3:21457613-21457632 Msa0944520:intron 30.0%
GAAGATTGTTGAATTCAGTA+CGG - chr6_3:21457740-21457759 Msa0944520:intron 30.0%
!!! TTTTTTTGTTCACAGGTTGA+AGG - chr6_3:21457838-21457857 Msa0944520:intron 30.0%
TTGAAAAGATGCAAATCTGT+TGG + chr6_3:21457913-21457932 None:intergenic 30.0%
! GATTTGCATCTTTTCAAAGA+AGG - chr6_3:21457916-21457935 Msa0944520:intron 30.0%
TGGCTTATGTTTCAATTTCA+TGG - chr6_3:21457976-21457995 Msa0944520:intron 30.0%
CGAATATTCTATCATTGACA+TGG + chr6_3:21458412-21458431 None:intergenic 30.0%
TTTGTCTTCGGTTTCAATTA+TGG + chr6_3:21458488-21458507 None:intergenic 30.0%
!! TGTTGATTGTTGAAGGTTTT+TGG - chr6_3:21458818-21458837 Msa0944520:intron 30.0%
! GTTGATTGTTGAAGGTTTTT+GGG - chr6_3:21458819-21458838 Msa0944520:intron 30.0%
! TTGATTGTTGAAGGTTTTTG+GGG - chr6_3:21458820-21458839 Msa0944520:intron 30.0%
GTGAAGAGGAAATATTTGTA+TGG + chr6_3:21458918-21458937 None:intergenic 30.0%
CAAAAATGGTTTACATCATG+TGG + chr6_3:21458940-21458959 None:intergenic 30.0%
!! ACTCGCAATTTTGACAAAAA+TGG + chr6_3:21458954-21458973 None:intergenic 30.0%
ATCCTAAGCACTAATTCAAT+AGG + chr6_3:21459020-21459039 None:intergenic 30.0%
TGCTTAGGATTTCTATGTAT+AGG - chr6_3:21459030-21459049 Msa0944520:intron 30.0%
ACTCTTCACTAATGACTAAA+CGG + chr6_3:21459074-21459093 None:intergenic 30.0%
! GAATAGTCTAGTTTCTAAAC+TGG + chr6_3:21459140-21459159 None:intergenic 30.0%
AACAACTTCTAACTGCTTAT+TGG - chr6_3:21459256-21459275 Msa0944520:intron 30.0%
! TAGTTTTTACATTTCCTGTG+TGG - chr6_3:21459293-21459312 Msa0944520:intron 30.0%
TATGTTAACTTCCAAAGAAC+CGG + chr6_3:21459325-21459344 None:intergenic 30.0%
TTAAGATCAACAAAATCACG+TGG + chr6_3:21459408-21459427 None:intergenic 30.0%
AGAGATTCCAAATGGTAATT+TGG + chr6_3:21459482-21459501 None:intergenic 30.0%
TATTATTACATGCCAAATGC+AGG - chr6_3:21459588-21459607 Msa0944520:intron 30.0%
TGTTATCACCATAATCCAAT+TGG + chr6_3:21459633-21459652 None:intergenic 30.0%
GATTATGGTGATAACATTTG+TGG - chr6_3:21459637-21459656 Msa0944520:intron 30.0%
ATATAACGCACACACATATA+GGG + chr6_3:21459750-21459769 None:intergenic 30.0%
TATATAACGCACACACATAT+AGG + chr6_3:21459751-21459770 None:intergenic 30.0%
ATGGTATACAATAGCATCAA+GGG + chr6_3:21459978-21459997 None:intergenic 30.0%
TATGTTAATTTCGTTACTCG+AGG - chr6_3:21460109-21460128 Msa0944520:intron 30.0%
GCAATGTAATATGGATGAAA+AGG + chr6_3:21460228-21460247 None:intergenic 30.0%
TGGTATATTAACGTTTGTAC+TGG - chr6_3:21460329-21460348 Msa0944520:CDS 30.0%
!!! GACTAACTTGTTCACTTTTA+CGG + chr6_3:21460393-21460412 None:intergenic 30.0%
AAACTCAACGAACCAAAAAG+GGG - chr6_3:21455199-21455218 Msa0944520:three_prime_UTR 35.0%
!! GACAATTTGGTGAGTGTTTT+CGG + chr6_3:21455301-21455320 None:intergenic 35.0%
AATCAGAGGAATCGACAATT+TGG + chr6_3:21455314-21455333 None:intergenic 35.0%
TGTAATGAAGAACCTGAAGA+GGG + chr6_3:21455398-21455417 None:intergenic 35.0%
TTGTAATGAAGAACCTGAAG+AGG + chr6_3:21455399-21455418 None:intergenic 35.0%
ATTTGAACCTGTTGATGTGA+TGG - chr6_3:21455544-21455563 Msa0944520:three_prime_UTR 35.0%
TTTGAACCTGTTGATGTGAT+GGG - chr6_3:21455545-21455564 Msa0944520:three_prime_UTR 35.0%
!! ATGAATCAGTTGGTAACTGT+AGG - chr6_3:21455596-21455615 Msa0944520:three_prime_UTR 35.0%
!! TGAATCAGTTGGTAACTGTA+GGG - chr6_3:21455597-21455616 Msa0944520:three_prime_UTR 35.0%
! TAGGGACATTTTTGATGTGT+TGG - chr6_3:21455615-21455634 Msa0944520:three_prime_UTR 35.0%
! AGGGACATTTTTGATGTGTT+GGG - chr6_3:21455616-21455635 Msa0944520:three_prime_UTR 35.0%
AGTTTCCTAAATTCAAACCC+AGG + chr6_3:21455645-21455664 None:intergenic 35.0%
CTTGATTGATGGGATTTAAG+AGG - chr6_3:21455677-21455696 Msa0944520:CDS 35.0%
!!! ATTTTTTATGTGTGGGGACT+TGG - chr6_3:21455810-21455829 Msa0944520:intron 35.0%
!!! TTTTTTATGTGTGGGGACTT+GGG - chr6_3:21455811-21455830 Msa0944520:intron 35.0%
GTACTTGCAGAACAAATCTT+CGG + chr6_3:21455935-21455954 None:intergenic 35.0%
ACCCTGTTAAATCTGATCTA+TGG + chr6_3:21456123-21456142 None:intergenic 35.0%
CAGGGTAACAAAATTGTACA+TGG - chr6_3:21456137-21456156 Msa0944520:intron 35.0%
ACCAACTATGCTGTACTTAA+GGG + chr6_3:21456191-21456210 None:intergenic 35.0%
TACCAACTATGCTGTACTTA+AGG + chr6_3:21456192-21456211 None:intergenic 35.0%
ACCTTAATTGTGGAAAAGTG+GGG + chr6_3:21456273-21456292 None:intergenic 35.0%
CACCTTAATTGTGGAAAAGT+GGG + chr6_3:21456274-21456293 None:intergenic 35.0%
ACACCTTAATTGTGGAAAAG+TGG + chr6_3:21456275-21456294 None:intergenic 35.0%
AGAATCACACACCTTAATTG+TGG + chr6_3:21456283-21456302 None:intergenic 35.0%
TAGTTTCTTTCACCATAGGT+TGG - chr6_3:21456357-21456376 Msa0944520:intron 35.0%
GCACATCATCACACAAAAAA+TGG + chr6_3:21456539-21456558 None:intergenic 35.0%
GAAAGTTCGGTACAGTTTAT+TGG - chr6_3:21456573-21456592 Msa0944520:intron 35.0%
! GGGGTGATAATTTGAGATAA+TGG + chr6_3:21456716-21456735 None:intergenic 35.0%
TGTCTGTATCTATGCTTCAT+AGG - chr6_3:21456747-21456766 Msa0944520:intron 35.0%
ACAACCCAAAACATACAATG+TGG + chr6_3:21456808-21456827 None:intergenic 35.0%
!!! ACATTGTATGTTTTGGGTTG+TGG - chr6_3:21456807-21456826 Msa0944520:intron 35.0%
!!! CATTGTATGTTTTGGGTTGT+GGG - chr6_3:21456808-21456827 Msa0944520:intron 35.0%
!!! GCTGTTTTTGACTTTTGTTG+AGG - chr6_3:21456894-21456913 Msa0944520:intron 35.0%
! AGGTCAGATGGAAAGATTTT+GGG + chr6_3:21456956-21456975 None:intergenic 35.0%
! AAGGTCAGATGGAAAGATTT+TGG + chr6_3:21456957-21456976 None:intergenic 35.0%
AATCAACTTCAAAGGTCAGA+TGG + chr6_3:21456968-21456987 None:intergenic 35.0%
AGAGATACAGCAAAGTTTAG+TGG - chr6_3:21457173-21457192 Msa0944520:intron 35.0%
GAGATACAGCAAAGTTTAGT+GGG - chr6_3:21457174-21457193 Msa0944520:intron 35.0%
GCAACCCAAAAAGTTCAATT+TGG + chr6_3:21457247-21457266 None:intergenic 35.0%
! TCAAATTGAAGGATTTTGGG+AGG + chr6_3:21457431-21457450 None:intergenic 35.0%
! ACCAGAGCAAATTTGTGTTT+TGG - chr6_3:21457664-21457683 Msa0944520:CDS 35.0%
! ACCAAAACACAAATTTGCTC+TGG + chr6_3:21457668-21457687 None:intergenic 35.0%
!! TATGATTGGTTTCGAATTCC+AGG + chr6_3:21457705-21457724 None:intergenic 35.0%
AATTCGAAACCAATCATACG+AGG - chr6_3:21457707-21457726 Msa0944520:CDS 35.0%
TGATGTTATCCTCGTATGAT+TGG + chr6_3:21457719-21457738 None:intergenic 35.0%
AGATGTTTGATGTATCGTGT+TGG - chr6_3:21457765-21457784 Msa0944520:intron 35.0%
TGATGTATCGTGTTGGATTT+AGG - chr6_3:21457772-21457791 Msa0944520:intron 35.0%
!! TTCACAGGTTGAAGGATTTT+GGG - chr6_3:21457846-21457865 Msa0944520:CDS 35.0%
AGATGCAAATCTGTTGGAAT+AGG + chr6_3:21457907-21457926 None:intergenic 35.0%
TAAGTATCTACCTCCCATAA+AGG + chr6_3:21457949-21457968 None:intergenic 35.0%
TATGGGAGGTAGATACTTAA+TGG - chr6_3:21457950-21457969 Msa0944520:intron 35.0%
AGGTAGATACTTAATGGCTT+TGG - chr6_3:21457956-21457975 Msa0944520:intron 35.0%
GTAGAAGTTTGTCCAAATGT+TGG - chr6_3:21458040-21458059 Msa0944520:intron 35.0%
TTAGCAGAGTCCTTCAAAAA+AGG + chr6_3:21458091-21458110 None:intergenic 35.0%
GTTTATCAGCAGACAAAACA+AGG + chr6_3:21458204-21458223 None:intergenic 35.0%
! TATTTGAAATCCTCGTCCAT+AGG - chr6_3:21458434-21458453 Msa0944520:intron 35.0%
AGACAAACATTTCAGACCTA+TGG + chr6_3:21458453-21458472 None:intergenic 35.0%
! TCAGTTGAACAGTTCAAGTT+TGG - chr6_3:21458636-21458655 Msa0944520:intron 35.0%
! CAGTTGAACAGTTCAAGTTT+GGG - chr6_3:21458637-21458656 Msa0944520:intron 35.0%
! AGTTGAACAGTTCAAGTTTG+GGG - chr6_3:21458638-21458657 Msa0944520:intron 35.0%
CAGTAACTTCATATAGAGGA+GGG + chr6_3:21458682-21458701 None:intergenic 35.0%
TCAGTAACTTCATATAGAGG+AGG + chr6_3:21458683-21458702 None:intergenic 35.0%
ACTAATTCAATAGGCAGAAG+GGG + chr6_3:21459011-21459030 None:intergenic 35.0%
CACTAATTCAATAGGCAGAA+GGG + chr6_3:21459012-21459031 None:intergenic 35.0%
TGCCTATTGAATTAGTGCTT+AGG - chr6_3:21459015-21459034 Msa0944520:intron 35.0%
TTCACTGCATAATATGCACT+AGG - chr6_3:21459093-21459112 Msa0944520:intron 35.0%
! TCTAGTTTCTAAACTGGGAA+AGG + chr6_3:21459134-21459153 None:intergenic 35.0%
GACTATTCTACTCGATGTAT+AGG - chr6_3:21459152-21459171 Msa0944520:intron 35.0%
! CACTGTTCTAAACAAAGAGA+GGG + chr6_3:21459213-21459232 None:intergenic 35.0%
! ACACTGTTCTAAACAAAGAG+AGG + chr6_3:21459214-21459233 None:intergenic 35.0%
ATTTCCTGTGTGGATAATAC+CGG - chr6_3:21459303-21459322 Msa0944520:intron 35.0%
ATCACGTGGAAACCAAATAA+AGG + chr6_3:21459394-21459413 None:intergenic 35.0%
ATTCATCTTACAGGAACACT+TGG - chr6_3:21459915-21459934 Msa0944520:intron 35.0%
TGGTATACAATAGCATCAAG+GGG + chr6_3:21459977-21459996 None:intergenic 35.0%
GATGGTATACAATAGCATCA+AGG + chr6_3:21459979-21459998 None:intergenic 35.0%
GCTACAAGAGCAATGTAATA+TGG + chr6_3:21460237-21460256 None:intergenic 35.0%
GGACTAGAATGAAAGAGAGA+GGG + chr6_3:21455176-21455195 None:intergenic 40.0%
! TGGACTAGAATGAAAGAGAG+AGG + chr6_3:21455177-21455196 None:intergenic 40.0%
AACGAACCAAAAAGGGGATT+AGG - chr6_3:21455205-21455224 Msa0944520:three_prime_UTR 40.0%
ACGAACCAAAAAGGGGATTA+GGG - chr6_3:21455206-21455225 Msa0944520:three_prime_UTR 40.0%
! GAAAACCCTAATCCCCTTTT+TGG + chr6_3:21455214-21455233 None:intergenic 40.0%
GACGTTGTTGTAAGAATCAG+AGG + chr6_3:21455328-21455347 None:intergenic 40.0%
TTCACGAGATTGTCGTTCTT+CGG + chr6_3:21455358-21455377 None:intergenic 40.0%
TCTATTCCCATCACATCAAC+AGG + chr6_3:21455554-21455573 None:intergenic 40.0%
! GGGACATTTTTGATGTGTTG+GGG - chr6_3:21455617-21455636 Msa0944520:three_prime_UTR 40.0%
! GGACATTTTTGATGTGTTGG+GGG - chr6_3:21455618-21455637 Msa0944520:three_prime_UTR 40.0%
! GACATTTTTGATGTGTTGGG+GGG - chr6_3:21455619-21455638 Msa0944520:three_prime_UTR 40.0%
TCATGTAAGTACAGCTCAGT+TGG - chr6_3:21455751-21455770 Msa0944520:CDS 40.0%
TTCTGCAAGTACAACTCAGT+TGG - chr6_3:21455943-21455962 Msa0944520:CDS 40.0%
!! AGTACAACTCAGTTGGTAGT+CGG - chr6_3:21455950-21455969 Msa0944520:CDS 40.0%
AAACTTAATGTGTTGGGGTC+TGG - chr6_3:21455984-21456003 Msa0944520:intron 40.0%
AACTTAATGTGTTGGGGTCT+GGG - chr6_3:21455985-21456004 Msa0944520:intron 40.0%
TCCCTTAAGTACAGCATAGT+TGG - chr6_3:21456187-21456206 Msa0944520:intron 40.0%
!! TCCCCACTTTTCCACAATTA+AGG - chr6_3:21456269-21456288 Msa0944520:intron 40.0%
GGTGTGTGATTCTTGTAACT+AGG - chr6_3:21456290-21456309 Msa0944520:intron 40.0%
!!! AAGTTGAAAGTTTTGGGCTG+TGG - chr6_3:21456499-21456518 Msa0944520:intron 40.0%
!!! AGTTGAAAGTTTTGGGCTGT+GGG - chr6_3:21456500-21456519 Msa0944520:intron 40.0%
! GCATCGACACTTCAAATTGA+AGG - chr6_3:21456620-21456639 Msa0944520:intron 40.0%
TATGACATGCACGTTAGACT+TGG - chr6_3:21456654-21456673 Msa0944520:intron 40.0%
AATTATCACCCCTGTTAGTG+TGG - chr6_3:21456724-21456743 Msa0944520:intron 40.0%
ATACAGACACCACACTAACA+GGG + chr6_3:21456736-21456755 None:intergenic 40.0%
!!! TGGAAAGATTTTGGGATGCA+TGG + chr6_3:21456948-21456967 None:intergenic 40.0%
ATGTCTCTCTCTCATCTTGT+TGG - chr6_3:21457584-21457603 Msa0944520:intron 40.0%
TGTCTCTCTCTCATCTTGTT+GGG - chr6_3:21457585-21457604 Msa0944520:intron 40.0%
! ACACAAATTTGCTCTGGTCA+AGG + chr6_3:21457662-21457681 None:intergenic 40.0%
!!! TTGTGTTTTGGTACACTCGT+CGG - chr6_3:21457676-21457695 Msa0944520:CDS 40.0%
!! GTTCACAGGTTGAAGGATTT+TGG - chr6_3:21457845-21457864 Msa0944520:CDS 40.0%
CAAATCTGTTGGAATAGGCA+AGG + chr6_3:21457902-21457921 None:intergenic 40.0%
AAGAAGGAATCCGTCCTTTA+TGG - chr6_3:21457932-21457951 Msa0944520:intron 40.0%
AGAAGGAATCCGTCCTTTAT+GGG - chr6_3:21457933-21457952 Msa0944520:intron 40.0%
TATCTACCTCCCATAAAGGA+CGG + chr6_3:21457945-21457964 None:intergenic 40.0%
GTTCTGTTATGGAGAGAGAA+AGG - chr6_3:21458018-21458037 Msa0944520:intron 40.0%
!!! TTACCGTGTGCCTTTTTTGA+AGG - chr6_3:21458078-21458097 Msa0944520:intron 40.0%
! AGTCCTTCAAAAAAGGCACA+CGG + chr6_3:21458084-21458103 None:intergenic 40.0%
! CTAACTGCAATGGTGGAAAA+TGG - chr6_3:21458107-21458126 Msa0944520:intron 40.0%
CAAGACTCATCCTACTAGAT+GGG + chr6_3:21458358-21458377 None:intergenic 40.0%
CATGTGAATCCGATGTCAAT+TGG - chr6_3:21458775-21458794 Msa0944520:intron 40.0%
CTAGCTGTTCCAATTGACAT+CGG + chr6_3:21458787-21458806 None:intergenic 40.0%
GTTTACATCATGTGGTGAAG+AGG + chr6_3:21458932-21458951 None:intergenic 40.0%
GCACTAATTCAATAGGCAGA+AGG + chr6_3:21459013-21459032 None:intergenic 40.0%
!! TGTGGATAATACCGGTTCTT+TGG - chr6_3:21459311-21459330 Msa0944520:intron 40.0%
GGATCAGCCAAATTACCATT+TGG - chr6_3:21459472-21459491 Msa0944520:intron 40.0%
CAAGCAAGAGAGATTCCAAA+TGG + chr6_3:21459490-21459509 None:intergenic 40.0%
! CATTTGGAATCTCTCTTGCT+TGG - chr6_3:21459488-21459507 Msa0944520:intron 40.0%
ACTAAGCATTCGTTTCAACG+AGG - chr6_3:21459666-21459685 Msa0944520:intron 40.0%
CCAGAAATGTTATGAAGGAC+AGG + chr6_3:21459786-21459805 None:intergenic 40.0%
CCTGTCCTTCATAACATTTC+TGG - chr6_3:21459783-21459802 Msa0944520:intron 40.0%
!!! ACATTTCTGGTTTTTCACGC+AGG - chr6_3:21459796-21459815 Msa0944520:intron 40.0%
TGCGAGACAATTCATCTTAC+AGG - chr6_3:21459906-21459925 Msa0944520:intron 40.0%
! TGACGATGCCTTTTGAACAT+TGG - chr6_3:21460005-21460024 Msa0944520:intron 40.0%
CTGAAACACCCAACAACATT+AGG + chr6_3:21460037-21460056 None:intergenic 40.0%
CTAATGTTGTTGGGTGTTTC+AGG - chr6_3:21460035-21460054 Msa0944520:intron 40.0%
! TTTTCACCTTGCTGAAGGAA+AGG - chr6_3:21460194-21460213 Msa0944520:intron 40.0%
CAATCTCGTGAACTCAAAGC+TGG - chr6_3:21455366-21455385 Msa0944520:three_prime_UTR 45.0%
ACGAGCTGTCATGAATCAGT+TGG - chr6_3:21455586-21455605 Msa0944520:three_prime_UTR 45.0%
TACAGACACCACACTAACAG+GGG + chr6_3:21456735-21456754 None:intergenic 45.0%
GATACAGACACCACACTAAC+AGG + chr6_3:21456737-21456756 None:intergenic 45.0%
TCTCTCTCATCTTGTTGGGA+AGG - chr6_3:21457589-21457608 Msa0944520:intron 45.0%
CTCTCTCATCTTGTTGGGAA+GGG - chr6_3:21457590-21457609 Msa0944520:intron 45.0%
!!! TGTGTTTTGGTACACTCGTC+GGG - chr6_3:21457677-21457696 Msa0944520:CDS 45.0%
GTTGGAATAGGCAAGGAAGA+AGG + chr6_3:21457895-21457914 None:intergenic 45.0%
AAGGACTCTGCTAACTGCAA+TGG - chr6_3:21458097-21458116 Msa0944520:intron 45.0%
CGATTCAAAAAGGCTGTCTC+AGG - chr6_3:21458136-21458155 Msa0944520:intron 45.0%
ATGTACCCTTCCCATCTAGT+AGG - chr6_3:21458345-21458364 Msa0944520:intron 45.0%
CTCATCCTACTAGATGGGAA+GGG + chr6_3:21458353-21458372 None:intergenic 45.0%
ACTCATCCTACTAGATGGGA+AGG + chr6_3:21458354-21458373 None:intergenic 45.0%
CCAAGACTCATCCTACTAGA+TGG + chr6_3:21458359-21458378 None:intergenic 45.0%
CCATCTAGTAGGATGAGTCT+TGG - chr6_3:21458356-21458375 Msa0944520:intron 45.0%
GTAGGATGAGTCTTGGTTGT+TGG - chr6_3:21458363-21458382 Msa0944520:intron 45.0%
ACATTTCAGACCTATGGACG+AGG + chr6_3:21458447-21458466 None:intergenic 45.0%
TATGGCTGTTCATAGTGCAC+TGG - chr6_3:21458596-21458615 Msa0944520:intron 45.0%
!! CATAGTGCACTGGTTGATGT+TGG - chr6_3:21458606-21458625 Msa0944520:intron 45.0%
CGATGTCAATTGGAACAGCT+AGG - chr6_3:21458785-21458804 Msa0944520:intron 45.0%
GTATGATTGCATGAGCAACG+AGG + chr6_3:21458979-21458998 None:intergenic 45.0%
AGAACCGGTATTATCCACAC+AGG + chr6_3:21459310-21459329 None:intergenic 45.0%
ATCTCATCATCTATGCCCTG+TGG - chr6_3:21459516-21459535 Msa0944520:intron 45.0%
GTGGGTGACCAATTGGATTA+TGG - chr6_3:21459622-21459641 Msa0944520:intron 45.0%
AATGCCTCTGATCATCAGGT+TGG - chr6_3:21459712-21459731 Msa0944520:intron 45.0%
! GTTTTTCACGCAGGCTGTAA+TGG - chr6_3:21459805-21459824 Msa0944520:intron 45.0%
TACTCCATAACATAGCCGTG+AGG + chr6_3:21459866-21459885 None:intergenic 45.0%
TACAGGAACACTTGGTTGAG+AGG - chr6_3:21459923-21459942 Msa0944520:intron 45.0%
ACAATAGCATCAAGGGGACT+AGG + chr6_3:21459971-21459990 None:intergenic 45.0%
GGTTGCGACCAATGTTCAAA+AGG + chr6_3:21460016-21460035 None:intergenic 45.0%
TGGTCGCAACCTAATGTTGT+TGG - chr6_3:21460025-21460044 Msa0944520:intron 45.0%
GGTCGCAACCTAATGTTGTT+GGG - chr6_3:21460026-21460045 Msa0944520:intron 45.0%
!!! GTTGCTTTTCACCTTGCTGA+AGG - chr6_3:21460189-21460208 Msa0944520:intron 45.0%
TGTGATCCTTTCCTTCAGCA+AGG + chr6_3:21460203-21460222 None:intergenic 45.0%
!! AAACAAATTAATAATAATTA+GGG + chr6_3:21455424-21455443 None:intergenic 5.0%
!! AAAACAAATTAATAATAATT+AGG + chr6_3:21455425-21455444 None:intergenic 5.0%
!!! AAAATATTTTATTCAAAATT+GGG - chr6_3:21458290-21458309 Msa0944520:intron 5.0%
!! AAAAAAAAAAACAAAATTAA+AGG + chr6_3:21460415-21460434 None:intergenic 5.0%
TGGGGACTTGGGTTCGAATT+TGG - chr6_3:21455822-21455841 Msa0944520:intron 50.0%
GGGGACTTGGGTTCGAATTT+GGG - chr6_3:21455823-21455842 Msa0944520:intron 50.0%
GGTGTGCGATTCTCGATACT+AGG - chr6_3:21456043-21456062 Msa0944520:intron 50.0%
!! ACAGCATAGTTGGTAGCTGC+AGG - chr6_3:21456197-21456216 Msa0944520:intron 50.0%
!! CAGCATAGTTGGTAGCTGCA+GGG - chr6_3:21456198-21456217 Msa0944520:intron 50.0%
TAATCTGATGTGTTGGGGCC+TGG - chr6_3:21456231-21456250 Msa0944520:intron 50.0%
AATCTGATGTGTTGGGGCCT+GGG - chr6_3:21456232-21456251 Msa0944520:intron 50.0%
GGAATCTCGAGTTCAAACCC+AGG + chr6_3:21456252-21456271 None:intergenic 50.0%
GTAACTACATGAGTCGGTGC+TGG + chr6_3:21456683-21456702 None:intergenic 50.0%
TGGTGCAAGCCGCTAAAATG+TGG + chr6_3:21457116-21457135 None:intergenic 50.0%
AGGAAGAAGGACGAGCAAGA+TGG + chr6_3:21457882-21457901 None:intergenic 50.0%
AGGAATCCGTCCTTTATGGG+AGG - chr6_3:21457936-21457955 Msa0944520:intron 50.0%
GACTCTGCTAACTGCAATGG+TGG - chr6_3:21458100-21458119 Msa0944520:intron 50.0%
!! AGGCTGTCTCAGGTCGTTTT+TGG - chr6_3:21458146-21458165 Msa0944520:intron 50.0%
!!! GGCTGTCTCAGGTCGTTTTT+GGG - chr6_3:21458147-21458166 Msa0944520:intron 50.0%
!!! TGTCTCAGGTCGTTTTTGGG+AGG - chr6_3:21458150-21458169 Msa0944520:intron 50.0%
!!! AGGTCGTTTTTGGGAGGATC+TGG - chr6_3:21458156-21458175 Msa0944520:intron 50.0%
GGATGAGTCTTGGTTGTTGG+TGG - chr6_3:21458366-21458385 Msa0944520:intron 50.0%
ATCCAATTGGTCACCCACCA+AGG + chr6_3:21459620-21459639 None:intergenic 50.0%
ACGAGGACATAGTGAGTGTC+TGG - chr6_3:21459683-21459702 Msa0944520:intron 50.0%
TCGCAATGCCTCTGATCATC+AGG - chr6_3:21459708-21459727 Msa0944520:intron 50.0%
GATGCCAACCTGATGATCAG+AGG + chr6_3:21459719-21459738 None:intergenic 50.0%
CGTCACCTAAAGCTTCCTCA+CGG - chr6_3:21459848-21459867 Msa0944520:intron 50.0%
CATAGCCGTGAGGAAGCTTT+AGG + chr6_3:21459856-21459875 None:intergenic 50.0%
GCTTCCTCACGGCTATGTTA+TGG - chr6_3:21459859-21459878 Msa0944520:intron 50.0%
!! TCTCGCAGAGAAGCATCATG+CGG + chr6_3:21459893-21459912 None:intergenic 50.0%
!! AAGGCATCGTCAAGCTGTGA+TGG + chr6_3:21459997-21460016 None:intergenic 50.0%
GTTGTTGGGTGTTTCAGGAC+TGG - chr6_3:21460040-21460059 Msa0944520:intron 50.0%
!! AGCTGGTCTTCACCCTCTTC+AGG - chr6_3:21455383-21455402 Msa0944520:three_prime_UTR 55.0%
! TTTTGATGTGTTGGGGGGCC+TGG - chr6_3:21455624-21455643 Msa0944520:three_prime_UTR 55.0%
TTTGATGTGTTGGGGGGCCT+GGG - chr6_3:21455625-21455644 Msa0944520:three_prime_UTR 55.0%
GGGGGCCTGGGTTTGAATTT+AGG - chr6_3:21455637-21455656 Msa0944520:exon 55.0%
CCAAGGCAAGCACCTGCATT+TGG + chr6_3:21459603-21459622 None:intergenic 55.0%
CCAAATGCAGGTGCTTGCCT+TGG - chr6_3:21459600-21459619 Msa0944520:intron 55.0%
AATGCAGGTGCTTGCCTTGG+TGG - chr6_3:21459603-21459622 Msa0944520:intron 55.0%
ATGCAGGTGCTTGCCTTGGT+GGG - chr6_3:21459604-21459623 Msa0944520:intron 55.0%
! TGCCTTGGTGGGTGACCAAT+TGG - chr6_3:21459615-21459634 Msa0944520:intron 55.0%
TGGTACACTCGTCGGGTACC+TGG - chr6_3:21457684-21457703 Msa0944520:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 21455164 21460436 21455164 ID=Msa0944520;Name=Msa0944520
chr6_3 mRNA 21455164 21460436 21455164 ID=Msa0944520-mRNA-1;Parent=Msa0944520;Name=Msa0944520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=82|1|1|1|1|1|6|487|228
chr6_3 exon 21455164 21455782 21455164 ID=Msa0944520-mRNA-1:exon:6399;Parent=Msa0944520-mRNA-1
chr6_3 exon 21455871 21455990 21455871 ID=Msa0944520-mRNA-1:exon:6398;Parent=Msa0944520-mRNA-1
chr6_3 exon 21457423 21457500 21457423 ID=Msa0944520-mRNA-1:exon:6397;Parent=Msa0944520-mRNA-1
chr6_3 exon 21457643 21457747 21457643 ID=Msa0944520-mRNA-1:exon:6396;Parent=Msa0944520-mRNA-1
chr6_3 exon 21457839 21457931 21457839 ID=Msa0944520-mRNA-1:exon:6395;Parent=Msa0944520-mRNA-1
chr6_3 exon 21460196 21460436 21460196 ID=Msa0944520-mRNA-1:exon:6394;Parent=Msa0944520-mRNA-1
chr6_3 five_prime_UTR 21460355 21460436 21460355 ID=Msa0944520-mRNA-1:five_prime_utr;Parent=Msa0944520-mRNA-1
chr6_3 CDS 21460196 21460354 21460196 ID=Msa0944520-mRNA-1:cds;Parent=Msa0944520-mRNA-1
chr6_3 CDS 21457839 21457931 21457839 ID=Msa0944520-mRNA-1:cds;Parent=Msa0944520-mRNA-1
chr6_3 CDS 21457643 21457747 21457643 ID=Msa0944520-mRNA-1:cds;Parent=Msa0944520-mRNA-1
chr6_3 CDS 21457423 21457500 21457423 ID=Msa0944520-mRNA-1:cds;Parent=Msa0944520-mRNA-1
chr6_3 CDS 21455871 21455990 21455871 ID=Msa0944520-mRNA-1:cds;Parent=Msa0944520-mRNA-1
chr6_3 CDS 21455651 21455782 21455651 ID=Msa0944520-mRNA-1:cds;Parent=Msa0944520-mRNA-1
chr6_3 three_prime_UTR 21455164 21455650 21455164 ID=Msa0944520-mRNA-1:three_prime_utr;Parent=Msa0944520-mRNA-1
Gene Sequence

>Msa0944520

ATGGATTTCACATCAAGCAAGAACAACAACAACAACGCATCAGAAAACAACACCGAAAACACTCACCAAATTGTCGATTCCTCTGATTCTTACAACAACGTCAAAGAAACCGAAGAACGACAATCTCGTGAACTCAAAGCTGGTCTTCACCCTCTTCAGAGCAAATTTGTGTTTTGGTACACTCGTCGGGTACCTGGAATTCGAAACCAATCATACGAGGATAACATCAAGAAGATTGTTGAATTCAGTACGGTTGAAGGATTTTGGGTCTGCTATTGCCATCTTGCTCGTCCTTCTTCCTTGCCTATTCCAACAGATTTGCATCTTTTCAAAGAAGGAATCCGTCCTTTATGGGAGGACTCTGCTAACTGCAATGGTGGAAAATGGATTATACGATTCAAAAAGGCTGTCTCAGGTCGTTTTTGGGAGGATCTGGTGCTTGCCTTGGTGGGTGACCAATTGGATTATGGTGATAACATTTGTGGTGCAGTACTAAGCATTCGTTTCAACGAGGACATAGTGAGTGTCTGGAATCGCAATGCCTCTGATCATCAGGCTGTAATGGCTTTGAGAGATTCGATTAAGCGTCACCTAAAGCTTCCTCACGGCTATGTTATGGAGTACAAGCCGCATGATGCTTCTCTGCGAGACAATTCATCTTACAGGAACACTTGGTTGAGAGGCTAG
Protein sequence

>Msa0944520

MDFTSSKNNNNNASENNTENTHQIVDSSDSYNNVKETEERQSRELKAGLHPLQSKFVFWYTRRVPGIRNQSYEDNIKKIVEFSTVEGFWVCYCHLARPSSLPIPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKAVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDIVSVWNRNASDHQAVMALRDSIKRHLKLPHGYVMEYKPHDASLRDNSSYRNTWLRG*