Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961090 | XP_010471674.1 | 94.488 | 127 | 5 | 1 | 19 | 145 | 12 | 136 | 1.46e-77 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961090 | sp|P80553|H3_NARPS | 94.444 | 126 | 5 | 1 | 20 | 145 | 13 | 136 | 1.47e-79 | 234 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0697060 | Msa0961090 | 0.806426 | 8.275343e-50 | -8.615850e-47 |
| Msa0406120 | Msa0961090 | 0.801049 | 1.081343e-48 | -8.615850e-47 |
| Msa0437990 | Msa0961090 | 0.826085 | 3.292595e-54 | -8.615850e-47 |
| Msa0887990 | Msa0961090 | 0.819641 | 1.044157e-52 | -8.615850e-47 |
| Msa0954920 | Msa0961090 | 0.804126 | 2.508563e-49 | -8.615850e-47 |
| Msa0961090 | Msa1077870 | 0.805243 | 1.466264e-49 | -8.615850e-47 |
| Msa0961090 | Msa1079180 | 0.818511 | 1.886799e-52 | -8.615850e-47 |
| Msa0961090 | Msa1084240 | 0.815880 | 7.367552e-52 | -8.615850e-47 |
| Msa0961090 | Msa1160690 | 0.808760 | 2.643143e-50 | -8.615850e-47 |
| Msa0961090 | Msa1438250 | 0.838707 | 2.450186e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961090 | MtrunA17_Chr4g0054161 | 94.444 | 126 | 5 | 1 | 20 | 145 | 13 | 136 | 1.08e-80 | 234 |
| Msa0961090 | MtrunA17_Chr8g0363741 | 94.444 | 126 | 5 | 1 | 20 | 145 | 13 | 136 | 1.08e-80 | 234 |
| Msa0961090 | MtrunA17_Chr1g0156021 | 94.444 | 126 | 5 | 1 | 20 | 145 | 13 | 136 | 1.08e-80 | 234 |
| Msa0961090 | MtrunA17_Chr4g0054151 | 94.444 | 126 | 5 | 1 | 20 | 145 | 16 | 139 | 1.24e-80 | 234 |
| Msa0961090 | MtrunA17_Chr8g0388121 | 93.651 | 126 | 6 | 1 | 20 | 145 | 13 | 136 | 5.37e-80 | 232 |
| Msa0961090 | MtrunA17_Chr5g0410931 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.47e-77 | 225 |
| Msa0961090 | MtrunA17_Chr5g0410951 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.47e-77 | 225 |
| Msa0961090 | MtrunA17_Chr8g0383851 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.47e-77 | 225 |
| Msa0961090 | MtrunA17_Chr8g0383781 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.47e-77 | 225 |
| Msa0961090 | MtrunA17_Chr8g0390361 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.47e-77 | 225 |
| Msa0961090 | MtrunA17_Chr2g0295191 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.47e-77 | 225 |
| Msa0961090 | MtrunA17_Chr7g0237661 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.47e-77 | 225 |
| Msa0961090 | MtrunA17_Chr4g0033041 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.47e-77 | 225 |
| Msa0961090 | MtrunA17_Chr7g0218971 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.47e-77 | 225 |
| Msa0961090 | MtrunA17_Chr4g0046301 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.47e-77 | 225 |
| Msa0961090 | MtrunA17_Chr8g0364801 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.47e-77 | 225 |
| Msa0961090 | MtrunA17_Chr2g0319141 | 87.097 | 124 | 16 | 0 | 22 | 145 | 13 | 136 | 8.16e-76 | 221 |
| Msa0961090 | MtrunA17_Chr2g0319151 | 87.097 | 124 | 16 | 0 | 22 | 145 | 13 | 136 | 8.16e-76 | 221 |
| Msa0961090 | MtrunA17_Chr2g0319131 | 81.618 | 136 | 13 | 3 | 20 | 145 | 13 | 146 | 3.73e-68 | 202 |
| Msa0961090 | MtrunA17_Chr2g0319121 | 79.365 | 126 | 22 | 3 | 20 | 144 | 13 | 135 | 5.18e-61 | 184 |
| Msa0961090 | MtrunA17_Chr7g0218961 | 79.464 | 112 | 23 | 0 | 34 | 145 | 2 | 113 | 3.21e-57 | 174 |
| Msa0961090 | MtrunA17_Chr7g0222991 | 67.521 | 117 | 38 | 0 | 27 | 143 | 26 | 142 | 1.70e-49 | 155 |
| Msa0961090 | MtrunA17_Chr7g0223001 | 58.824 | 119 | 37 | 2 | 26 | 143 | 39 | 146 | 1.50e-38 | 128 |
| Msa0961090 | MtrunA17_Chr5g0407311 | 60.377 | 106 | 38 | 2 | 20 | 125 | 12 | 113 | 3.00e-34 | 115 |
| Msa0961090 | MtrunA17_Chr8g0347231 | 53.061 | 98 | 45 | 1 | 46 | 142 | 28 | 125 | 2.01e-27 | 99.0 |
| Msa0961090 | MtrunA17_Chr7g0240791 | 87.500 | 56 | 5 | 1 | 20 | 75 | 13 | 66 | 4.54e-25 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961090 | AT4G40030.3 | 94.444 | 126 | 5 | 1 | 20 | 145 | 13 | 136 | 1.49e-80 | 234 |
| Msa0961090 | AT4G40030.1 | 94.444 | 126 | 5 | 1 | 20 | 145 | 13 | 136 | 1.49e-80 | 234 |
| Msa0961090 | AT4G40030.4 | 94.444 | 126 | 5 | 1 | 20 | 145 | 13 | 136 | 1.49e-80 | 234 |
| Msa0961090 | AT5G10980.1 | 94.444 | 126 | 5 | 1 | 20 | 145 | 13 | 136 | 1.49e-80 | 234 |
| Msa0961090 | AT4G40040.2 | 94.444 | 126 | 5 | 1 | 20 | 145 | 13 | 136 | 1.49e-80 | 234 |
| Msa0961090 | AT4G40040.3 | 94.444 | 126 | 5 | 1 | 20 | 145 | 13 | 136 | 1.49e-80 | 234 |
| Msa0961090 | AT4G40040.1 | 94.444 | 126 | 5 | 1 | 20 | 145 | 13 | 136 | 1.49e-80 | 234 |
| Msa0961090 | AT4G40030.2 | 94.444 | 126 | 5 | 1 | 20 | 145 | 41 | 164 | 2.48e-80 | 234 |
| Msa0961090 | AT1G13370.1 | 91.339 | 127 | 9 | 1 | 19 | 145 | 12 | 136 | 5.83e-79 | 230 |
| Msa0961090 | AT1G75600.1 | 91.339 | 127 | 9 | 1 | 19 | 145 | 12 | 136 | 1.13e-78 | 229 |
| Msa0961090 | AT1G09200.1 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.99e-77 | 225 |
| Msa0961090 | AT5G65360.1 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.99e-77 | 225 |
| Msa0961090 | AT5G10390.1 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.99e-77 | 225 |
| Msa0961090 | AT5G10400.1 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.99e-77 | 225 |
| Msa0961090 | AT3G27360.1 | 91.270 | 126 | 9 | 1 | 20 | 145 | 13 | 136 | 2.99e-77 | 225 |
| Msa0961090 | AT5G65350.1 | 87.302 | 126 | 14 | 1 | 20 | 145 | 13 | 136 | 1.10e-73 | 216 |
| Msa0961090 | AT1G19890.1 | 86.777 | 121 | 15 | 1 | 26 | 145 | 17 | 137 | 7.75e-70 | 207 |
| Msa0961090 | AT5G12910.1 | 68.000 | 125 | 31 | 1 | 29 | 144 | 6 | 130 | 3.18e-55 | 169 |
| Msa0961090 | AT1G01370.2 | 54.369 | 103 | 45 | 1 | 43 | 143 | 72 | 174 | 3.79e-28 | 102 |
| Msa0961090 | AT1G01370.1 | 54.369 | 103 | 45 | 1 | 43 | 143 | 72 | 174 | 3.79e-28 | 102 |
| Msa0961090 | AT1G01370.4 | 54.369 | 103 | 45 | 1 | 43 | 143 | 72 | 174 | 3.79e-28 | 102 |
| Msa0961090 | AT1G01370.3 | 54.369 | 103 | 45 | 1 | 43 | 143 | 72 | 174 | 3.79e-28 | 102 |
Find 43 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTATGGCGGATTAGTATTT+TGG | 0.163403 | 6_3:+81834753 | Msa0961090:three_prime_UTR |
| CCATGCAGTTCTTGCACTTC+AGG | 0.275497 | 6_3:+81834581 | Msa0961090:CDS |
| TACCGAAGTGCGACGGTTCC+AGG | 0.277433 | 6_3:-81834206 | None:intergenic |
| CATTCGCGGTGAACGTGCTT+AGG | 0.355234 | 6_3:+81834710 | Msa0961090:CDS |
| TCAAAAGCTCAGTACTCTTC+TGG | 0.362715 | 6_3:-81834384 | None:intergenic |
| AGAAAACGACGTCGGAGTTA+AGG | 0.377172 | 6_3:-81833963 | None:intergenic |
| GTGCAAGAACTGCATGGCTC+TGG | 0.421979 | 6_3:-81834575 | None:intergenic |
| TTGGTGGCGAGTTGCTTCCT+TGG | 0.438331 | 6_3:-81834015 | None:intergenic |
| TTACCTGGTTGGATTGTTTG+AGG | 0.438418 | 6_3:+81834617 | Msa0961090:CDS |
| GGAAGCAGCTGAGGCTTACC+TGG | 0.448380 | 6_3:+81834602 | Msa0961090:CDS |
| AAACCTCACCGTTACTGTCC+TGG | 0.448494 | 6_3:+81834188 | Msa0961090:CDS |
| TGAAATCTTGAGCAATTTCA+CGG | 0.450492 | 6_3:-81834435 | None:intergenic |
| GGGAAATCTGCTCCTACTAC+TGG | 0.450787 | 6_3:+81834155 | Msa0961090:CDS |
| CGAGCAAGCTGAATGTCCTT+TGG | 0.451057 | 6_3:-81834684 | None:intergenic |
| TCACGGTCAAGACGCTGAAA+TGG | 0.458572 | 6_3:-81834418 | None:intergenic |
| CAGCTTGCTCGTCGCATTCG+CGG | 0.459350 | 6_3:+81834696 | Msa0961090:CDS |
| AGCATGAATTGCACACAGAT+TGG | 0.462192 | 6_3:-81834643 | None:intergenic |
| TGAAATTGCTCAAGATTTCA+AGG | 0.466768 | 6_3:+81834438 | Msa0961090:CDS |
| CAGTACTCTTCTGGTACTTA+CGG | 0.482178 | 6_3:-81834375 | None:intergenic |
| GTTACGGTGGTGCGCGAGCA+AGG | 0.494162 | 6_3:-81833938 | None:intergenic |
| ATTCGCGGTGAACGTGCTTA+GGG | 0.501136 | 6_3:+81834711 | Msa0961090:CDS |
| GCGAGTTGCTTCCTTGGAGT+CGG | 0.511128 | 6_3:-81834009 | None:intergenic |
| TGCACTTCAGGAAGCAGCTG+AGG | 0.513447 | 6_3:+81834593 | Msa0961090:CDS |
| GCAGCTGAGGCTTACCTGGT+TGG | 0.521313 | 6_3:+81834606 | Msa0961090:CDS |
| GCGGGATTGCGCCGACTCCA+AGG | 0.539769 | 6_3:+81833998 | Msa0961090:CDS |
| CGTCGGAGTTAAGGAGGTTA+CGG | 0.545555 | 6_3:-81833954 | None:intergenic |
| GTCCTGGAACCGTCGCACTT+CGG | 0.555401 | 6_3:+81834204 | Msa0961090:CDS |
| GTGTGCAATTCATGCTAAGC+AGG | 0.556906 | 6_3:+81834650 | Msa0961090:CDS |
| GTGAACGGTGGTTACCTTGG+TGG | 0.576709 | 6_3:-81834031 | None:intergenic |
| CGCGGTGAACGTGCTTAGGG+TGG | 0.589504 | 6_3:+81834714 | Msa0961090:exon |
| CCTGAAGTGCAAGAACTGCA+TGG | 0.601251 | 6_3:-81834581 | None:intergenic |
| AAACGACGTCGGAGTTAAGG+AGG | 0.607048 | 6_3:-81833960 | None:intergenic |
| ACGAAATTACCGAAGTGCGA+CGG | 0.610470 | 6_3:-81834213 | None:intergenic |
| AAATCTGCTCCTACTACTGG+AGG | 0.613821 | 6_3:+81834158 | Msa0961090:CDS |
| GAACGTGCTTAGGGTGGTGA+AGG | 0.623913 | 6_3:+81834720 | Msa0961090:exon |
| GCAGGTGACAATTATGCCAA+AGG | 0.629580 | 6_3:+81834668 | Msa0961090:CDS |
| CGACGGTTCCAGGACAGTAA+CGG | 0.631893 | 6_3:-81834196 | None:intergenic |
| GACGCTGAAATGGAAGCTTG+CGG | 0.641998 | 6_3:-81834408 | None:intergenic |
| TATCCTCAAACAATCCAACC+AGG | 0.669163 | 6_3:-81834620 | None:intergenic |
| AAGGAAGCAACTCGCCACCA+AGG | 0.677037 | 6_3:+81834017 | Msa0961090:CDS |
| CGGAGTTAAGGAGGTTACGG+TGG | 0.702364 | 6_3:-81833951 | None:intergenic |
| GTTCCAGGACAGTAACGGTG+AGG | 0.712197 | 6_3:-81834191 | None:intergenic |
| AATCAACCAGAAAACGACGT+CGG | 0.764087 | 6_3:-81833971 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGGATTCATAATTTTT+AGG | + | chr6_3:81834276-81834295 | Msa0961090:intron | 15.0% |
| !! | TGTTAAAAATTGAACATTAT+AGG | - | chr6_3:81834834-81834853 | None:intergenic | 15.0% |
| !!! | ATTTTGGATTCATAATTTTT+AGG | + | chr6_3:81834276-81834295 | Msa0961090:intron | 15.0% |
| !! | TGTTAAAAATTGAACATTAT+AGG | - | chr6_3:81834834-81834853 | None:intergenic | 15.0% |
| !! | TCTGAAAACCTAAAAAATTA+GGG | - | chr6_3:81834243-81834262 | None:intergenic | 20.0% |
| !!! | AGAGTTTTGAATTTGAATTT+TGG | + | chr6_3:81834260-81834279 | Msa0961090:intron | 20.0% |
| !!! | TTTTAGGAATTTTGAATTTG+CGG | + | chr6_3:81834292-81834311 | Msa0961090:intron | 20.0% |
| !! | ACAAATTAAATAAACCAAAG+AGG | - | chr6_3:81834512-81834531 | None:intergenic | 20.0% |
| !!! | TTTGATATTGTTGTTATAGA+CGG | + | chr6_3:81834542-81834561 | Msa0961090:intron | 20.0% |
| !!! | AAGTTTGTACTAGATTTTAT+TGG | + | chr6_3:81834893-81834912 | Msa0961090:intron | 20.0% |
| !!! | AGTTTGTACTAGATTTTATT+GGG | + | chr6_3:81834894-81834913 | Msa0961090:intron | 20.0% |
| !! | TCTGAAAACCTAAAAAATTA+GGG | - | chr6_3:81834243-81834262 | None:intergenic | 20.0% |
| !!! | AGAGTTTTGAATTTGAATTT+TGG | + | chr6_3:81834260-81834279 | Msa0961090:intron | 20.0% |
| !!! | TTTTAGGAATTTTGAATTTG+CGG | + | chr6_3:81834292-81834311 | Msa0961090:intron | 20.0% |
| !! | ACAAATTAAATAAACCAAAG+AGG | - | chr6_3:81834512-81834531 | None:intergenic | 20.0% |
| !!! | TTTGATATTGTTGTTATAGA+CGG | + | chr6_3:81834542-81834561 | Msa0961090:intron | 20.0% |
| !!! | AAGTTTGTACTAGATTTTAT+TGG | + | chr6_3:81834893-81834912 | Msa0961090:intron | 20.0% |
| !!! | AGTTTGTACTAGATTTTATT+GGG | + | chr6_3:81834894-81834913 | Msa0961090:intron | 20.0% |
| ! | CTGAAAACCTAAAAAATTAG+GGG | - | chr6_3:81834242-81834261 | None:intergenic | 25.0% |
| !! | CTCTGAAAACCTAAAAAATT+AGG | - | chr6_3:81834244-81834263 | None:intergenic | 25.0% |
| !! | ATTTGCGGTTTATGATTTTT+AGG | + | chr6_3:81834307-81834326 | Msa0961090:intron | 25.0% |
| !!! | TTAGTATTTTGGAAGGATTT+AGG | + | chr6_3:81834764-81834783 | Msa0961090:three_prime_UTR | 25.0% |
| !!! | TAGTATTTTGGAAGGATTTA+GGG | + | chr6_3:81834765-81834784 | Msa0961090:three_prime_UTR | 25.0% |
| ! | CTGAAAACCTAAAAAATTAG+GGG | - | chr6_3:81834242-81834261 | None:intergenic | 25.0% |
| !! | CTCTGAAAACCTAAAAAATT+AGG | - | chr6_3:81834244-81834263 | None:intergenic | 25.0% |
| !! | ATTTGCGGTTTATGATTTTT+AGG | + | chr6_3:81834307-81834326 | Msa0961090:intron | 25.0% |
| !!! | TTAGTATTTTGGAAGGATTT+AGG | + | chr6_3:81834764-81834783 | Msa0961090:three_prime_UTR | 25.0% |
| !!! | TAGTATTTTGGAAGGATTTA+GGG | + | chr6_3:81834765-81834784 | Msa0961090:three_prime_UTR | 25.0% |
| AACGGAAAACAAATCAGTTA+CGG | - | chr6_3:81834059-81834078 | None:intergenic | 30.0% | |
| ! | TCGTTTTCCCCTAATTTTTT+AGG | + | chr6_3:81834232-81834251 | Msa0961090:intron | 30.0% |
| TGAAATCTTGAGCAATTTCA+CGG | - | chr6_3:81834438-81834457 | None:intergenic | 30.0% | |
| TGAAATTGCTCAAGATTTCA+AGG | + | chr6_3:81834438-81834457 | Msa0961090:CDS | 30.0% | |
| AACGGAAAACAAATCAGTTA+CGG | - | chr6_3:81834059-81834078 | None:intergenic | 30.0% | |
| ! | TCGTTTTCCCCTAATTTTTT+AGG | + | chr6_3:81834232-81834251 | Msa0961090:intron | 30.0% |
| TGAAATCTTGAGCAATTTCA+CGG | - | chr6_3:81834438-81834457 | None:intergenic | 30.0% | |
| TGAAATTGCTCAAGATTTCA+AGG | + | chr6_3:81834438-81834457 | Msa0961090:CDS | 30.0% | |
| ! | TTTTCCGTTTTCTCGATGTT+AGG | + | chr6_3:81834070-81834089 | Msa0961090:intron | 35.0% |
| ! | TTTCCGTTTTCTCGATGTTA+GGG | + | chr6_3:81834071-81834090 | Msa0961090:intron | 35.0% |
| AAACCCTAACATCGAGAAAA+CGG | - | chr6_3:81834077-81834096 | None:intergenic | 35.0% | |
| !!! | TTTCATCGCTTTTTTCGTTC+AGG | + | chr6_3:81834127-81834146 | Msa0961090:intron | 35.0% |
| TGTGAAATCTTGTTCCTCTT+TGG | + | chr6_3:81834495-81834514 | Msa0961090:intron | 35.0% | |
| ! | TTTTCCGTTTTCTCGATGTT+AGG | + | chr6_3:81834070-81834089 | Msa0961090:intron | 35.0% |
| ! | TTTCCGTTTTCTCGATGTTA+GGG | + | chr6_3:81834071-81834090 | Msa0961090:intron | 35.0% |
| AAACCCTAACATCGAGAAAA+CGG | - | chr6_3:81834077-81834096 | None:intergenic | 35.0% | |
| !!! | TTTCATCGCTTTTTTCGTTC+AGG | + | chr6_3:81834127-81834146 | Msa0961090:intron | 35.0% |
| TGTGAAATCTTGTTCCTCTT+TGG | + | chr6_3:81834495-81834514 | Msa0961090:intron | 35.0% | |
| AATCAACCAGAAAACGACGT+CGG | - | chr6_3:81833974-81833993 | None:intergenic | 40.0% | |
| !!! | GTCGTTTTCTGGTTGATTCA+CGG | + | chr6_3:81833976-81833995 | Msa0961090:CDS | 40.0% |
| AAATCAGTTACGGTGGTGAA+CGG | - | chr6_3:81834049-81834068 | None:intergenic | 40.0% | |
| GGAAAACAAATCAGTTACGG+TGG | - | chr6_3:81834056-81834075 | None:intergenic | 40.0% | |
| !! | TTTTTGACTCCTCCAGTAGT+AGG | - | chr6_3:81834170-81834189 | None:intergenic | 40.0% |
| CAGTACTCTTCTGGTACTTA+CGG | - | chr6_3:81834378-81834397 | None:intergenic | 40.0% | |
| TCAAAAGCTCAGTACTCTTC+TGG | - | chr6_3:81834387-81834406 | None:intergenic | 40.0% | |
| TTACCTGGTTGGATTGTTTG+AGG | + | chr6_3:81834617-81834636 | Msa0961090:CDS | 40.0% | |
| TATCCTCAAACAATCCAACC+AGG | - | chr6_3:81834623-81834642 | None:intergenic | 40.0% | |
| AGCATGAATTGCACACAGAT+TGG | - | chr6_3:81834646-81834665 | None:intergenic | 40.0% | |
| !!! | GGTATGGCGGATTAGTATTT+TGG | + | chr6_3:81834753-81834772 | Msa0961090:three_prime_UTR | 40.0% |
| !!! | TGGCGGATTAGTATTTTGGA+AGG | + | chr6_3:81834757-81834776 | Msa0961090:three_prime_UTR | 40.0% |
| AATCAACCAGAAAACGACGT+CGG | - | chr6_3:81833974-81833993 | None:intergenic | 40.0% | |
| !!! | GTCGTTTTCTGGTTGATTCA+CGG | + | chr6_3:81833976-81833995 | Msa0961090:CDS | 40.0% |
| AAATCAGTTACGGTGGTGAA+CGG | - | chr6_3:81834049-81834068 | None:intergenic | 40.0% | |
| GGAAAACAAATCAGTTACGG+TGG | - | chr6_3:81834056-81834075 | None:intergenic | 40.0% | |
| !! | TTTTTGACTCCTCCAGTAGT+AGG | - | chr6_3:81834170-81834189 | None:intergenic | 40.0% |
| CAGTACTCTTCTGGTACTTA+CGG | - | chr6_3:81834378-81834397 | None:intergenic | 40.0% | |
| TCAAAAGCTCAGTACTCTTC+TGG | - | chr6_3:81834387-81834406 | None:intergenic | 40.0% | |
| TTACCTGGTTGGATTGTTTG+AGG | + | chr6_3:81834617-81834636 | Msa0961090:CDS | 40.0% | |
| TATCCTCAAACAATCCAACC+AGG | - | chr6_3:81834623-81834642 | None:intergenic | 40.0% | |
| AGCATGAATTGCACACAGAT+TGG | - | chr6_3:81834646-81834665 | None:intergenic | 40.0% | |
| !!! | GGTATGGCGGATTAGTATTT+TGG | + | chr6_3:81834753-81834772 | Msa0961090:three_prime_UTR | 40.0% |
| !!! | TGGCGGATTAGTATTTTGGA+AGG | + | chr6_3:81834757-81834776 | Msa0961090:three_prime_UTR | 40.0% |
| AGAAAACGACGTCGGAGTTA+AGG | - | chr6_3:81833966-81833985 | None:intergenic | 45.0% | |
| !! | TTAACTCCGACGTCGTTTTC+TGG | + | chr6_3:81833965-81833984 | Msa0961090:CDS | 45.0% |
| !!! | GTTTTCTGGTTGATTCACGG+CGG | + | chr6_3:81833979-81833998 | Msa0961090:CDS | 45.0% |
| !!! | TTTTCTGGTTGATTCACGGC+GGG | + | chr6_3:81833980-81833999 | Msa0961090:CDS | 45.0% |
| !!! | CTTTTTTCGTTCAGGCTGCT+GGG | + | chr6_3:81834135-81834154 | Msa0961090:intron | 45.0% |
| AAATCTGCTCCTACTACTGG+AGG | + | chr6_3:81834158-81834177 | Msa0961090:CDS | 45.0% | |
| ACGAAATTACCGAAGTGCGA+CGG | - | chr6_3:81834216-81834235 | None:intergenic | 45.0% | |
| GTGTGCAATTCATGCTAAGC+AGG | + | chr6_3:81834650-81834669 | Msa0961090:CDS | 45.0% | |
| GCAGGTGACAATTATGCCAA+AGG | + | chr6_3:81834668-81834687 | Msa0961090:CDS | 45.0% | |
| !!! | TGAAGGTGCTTTTAGGGGTA+TGG | + | chr6_3:81834737-81834756 | Msa0961090:three_prime_UTR | 45.0% |
| AGAAAACGACGTCGGAGTTA+AGG | - | chr6_3:81833966-81833985 | None:intergenic | 45.0% | |
| !! | TTAACTCCGACGTCGTTTTC+TGG | + | chr6_3:81833965-81833984 | Msa0961090:CDS | 45.0% |
| !!! | GTTTTCTGGTTGATTCACGG+CGG | + | chr6_3:81833979-81833998 | Msa0961090:CDS | 45.0% |
| !!! | TTTTCTGGTTGATTCACGGC+GGG | + | chr6_3:81833980-81833999 | Msa0961090:CDS | 45.0% |
| !!! | CTTTTTTCGTTCAGGCTGCT+GGG | + | chr6_3:81834135-81834154 | Msa0961090:intron | 45.0% |
| AAATCTGCTCCTACTACTGG+AGG | + | chr6_3:81834158-81834177 | Msa0961090:CDS | 45.0% | |
| ACGAAATTACCGAAGTGCGA+CGG | - | chr6_3:81834216-81834235 | None:intergenic | 45.0% | |
| GTGTGCAATTCATGCTAAGC+AGG | + | chr6_3:81834650-81834669 | Msa0961090:CDS | 45.0% | |
| GCAGGTGACAATTATGCCAA+AGG | + | chr6_3:81834668-81834687 | Msa0961090:CDS | 45.0% | |
| !!! | TGAAGGTGCTTTTAGGGGTA+TGG | + | chr6_3:81834737-81834756 | Msa0961090:three_prime_UTR | 45.0% |
| CGTCGGAGTTAAGGAGGTTA+CGG | - | chr6_3:81833957-81833976 | None:intergenic | 50.0% | |
| AAACGACGTCGGAGTTAAGG+AGG | - | chr6_3:81833963-81833982 | None:intergenic | 50.0% | |
| !!! | GCTTTTTTCGTTCAGGCTGC+TGG | + | chr6_3:81834134-81834153 | Msa0961090:intron | 50.0% |
| GGGAAATCTGCTCCTACTAC+TGG | + | chr6_3:81834155-81834174 | Msa0961090:CDS | 50.0% | |
| AAACCTCACCGTTACTGTCC+TGG | + | chr6_3:81834188-81834207 | Msa0961090:CDS | 50.0% | |
| GACGCTGAAATGGAAGCTTG+CGG | - | chr6_3:81834411-81834430 | None:intergenic | 50.0% | |
| TCACGGTCAAGACGCTGAAA+TGG | - | chr6_3:81834421-81834440 | None:intergenic | 50.0% | |
| CCTGAAGTGCAAGAACTGCA+TGG | - | chr6_3:81834584-81834603 | None:intergenic | 50.0% | |
| CCATGCAGTTCTTGCACTTC+AGG | + | chr6_3:81834581-81834600 | Msa0961090:CDS | 50.0% | |
| CGAGCAAGCTGAATGTCCTT+TGG | - | chr6_3:81834687-81834706 | None:intergenic | 50.0% | |
| ATTCGCGGTGAACGTGCTTA+GGG | + | chr6_3:81834711-81834730 | Msa0961090:CDS | 50.0% | |
| !!! | AGGGTGGTGAAGGTGCTTTT+AGG | + | chr6_3:81834730-81834749 | Msa0961090:exon | 50.0% |
| !!! | GGGTGGTGAAGGTGCTTTTA+GGG | + | chr6_3:81834731-81834750 | Msa0961090:exon | 50.0% |
| !!! | GGTGGTGAAGGTGCTTTTAG+GGG | + | chr6_3:81834732-81834751 | Msa0961090:three_prime_UTR | 50.0% |
| !! | AGGTGCTTTTAGGGGTATGG+CGG | + | chr6_3:81834740-81834759 | Msa0961090:three_prime_UTR | 50.0% |
| CGTCGGAGTTAAGGAGGTTA+CGG | - | chr6_3:81833957-81833976 | None:intergenic | 50.0% | |
| AAACGACGTCGGAGTTAAGG+AGG | - | chr6_3:81833963-81833982 | None:intergenic | 50.0% | |
| !!! | GCTTTTTTCGTTCAGGCTGC+TGG | + | chr6_3:81834134-81834153 | Msa0961090:intron | 50.0% |
| GGGAAATCTGCTCCTACTAC+TGG | + | chr6_3:81834155-81834174 | Msa0961090:CDS | 50.0% | |
| AAACCTCACCGTTACTGTCC+TGG | + | chr6_3:81834188-81834207 | Msa0961090:CDS | 50.0% | |
| GACGCTGAAATGGAAGCTTG+CGG | - | chr6_3:81834411-81834430 | None:intergenic | 50.0% | |
| TCACGGTCAAGACGCTGAAA+TGG | - | chr6_3:81834421-81834440 | None:intergenic | 50.0% | |
| CCTGAAGTGCAAGAACTGCA+TGG | - | chr6_3:81834584-81834603 | None:intergenic | 50.0% | |
| CCATGCAGTTCTTGCACTTC+AGG | + | chr6_3:81834581-81834600 | Msa0961090:CDS | 50.0% | |
| CGAGCAAGCTGAATGTCCTT+TGG | - | chr6_3:81834687-81834706 | None:intergenic | 50.0% | |
| ATTCGCGGTGAACGTGCTTA+GGG | + | chr6_3:81834711-81834730 | Msa0961090:CDS | 50.0% | |
| !!! | AGGGTGGTGAAGGTGCTTTT+AGG | + | chr6_3:81834730-81834749 | Msa0961090:exon | 50.0% |
| !!! | GGGTGGTGAAGGTGCTTTTA+GGG | + | chr6_3:81834731-81834750 | Msa0961090:exon | 50.0% |
| !!! | GGTGGTGAAGGTGCTTTTAG+GGG | + | chr6_3:81834732-81834751 | Msa0961090:three_prime_UTR | 50.0% |
| !! | AGGTGCTTTTAGGGGTATGG+CGG | + | chr6_3:81834740-81834759 | Msa0961090:three_prime_UTR | 50.0% |
| CGGAGTTAAGGAGGTTACGG+TGG | - | chr6_3:81833954-81833973 | None:intergenic | 55.0% | |
| GCGAGTTGCTTCCTTGGAGT+CGG | - | chr6_3:81834012-81834031 | None:intergenic | 55.0% | |
| !! | TTGGTGGCGAGTTGCTTCCT+TGG | - | chr6_3:81834018-81834037 | None:intergenic | 55.0% |
| AAGGAAGCAACTCGCCACCA+AGG | + | chr6_3:81834017-81834036 | Msa0961090:CDS | 55.0% | |
| GTGAACGGTGGTTACCTTGG+TGG | - | chr6_3:81834034-81834053 | None:intergenic | 55.0% | |
| GTGGTGAACGGTGGTTACCT+TGG | - | chr6_3:81834037-81834056 | None:intergenic | 55.0% | |
| TCAGTTACGGTGGTGAACGG+TGG | - | chr6_3:81834046-81834065 | None:intergenic | 55.0% | |
| GTTCCAGGACAGTAACGGTG+AGG | - | chr6_3:81834194-81834213 | None:intergenic | 55.0% | |
| CGACGGTTCCAGGACAGTAA+CGG | - | chr6_3:81834199-81834218 | None:intergenic | 55.0% | |
| GTGCAAGAACTGCATGGCTC+TGG | - | chr6_3:81834578-81834597 | None:intergenic | 55.0% | |
| TGCACTTCAGGAAGCAGCTG+AGG | + | chr6_3:81834593-81834612 | Msa0961090:CDS | 55.0% | |
| CATTCGCGGTGAACGTGCTT+AGG | + | chr6_3:81834710-81834729 | Msa0961090:CDS | 55.0% | |
| GAACGTGCTTAGGGTGGTGA+AGG | + | chr6_3:81834720-81834739 | Msa0961090:exon | 55.0% | |
| CGGAGTTAAGGAGGTTACGG+TGG | - | chr6_3:81833954-81833973 | None:intergenic | 55.0% | |
| GCGAGTTGCTTCCTTGGAGT+CGG | - | chr6_3:81834012-81834031 | None:intergenic | 55.0% | |
| !! | TTGGTGGCGAGTTGCTTCCT+TGG | - | chr6_3:81834018-81834037 | None:intergenic | 55.0% |
| AAGGAAGCAACTCGCCACCA+AGG | + | chr6_3:81834017-81834036 | Msa0961090:CDS | 55.0% | |
| GTGAACGGTGGTTACCTTGG+TGG | - | chr6_3:81834034-81834053 | None:intergenic | 55.0% | |
| GTGGTGAACGGTGGTTACCT+TGG | - | chr6_3:81834037-81834056 | None:intergenic | 55.0% | |
| TCAGTTACGGTGGTGAACGG+TGG | - | chr6_3:81834046-81834065 | None:intergenic | 55.0% | |
| GTTCCAGGACAGTAACGGTG+AGG | - | chr6_3:81834194-81834213 | None:intergenic | 55.0% | |
| CGACGGTTCCAGGACAGTAA+CGG | - | chr6_3:81834199-81834218 | None:intergenic | 55.0% | |
| GTGCAAGAACTGCATGGCTC+TGG | - | chr6_3:81834578-81834597 | None:intergenic | 55.0% | |
| TGCACTTCAGGAAGCAGCTG+AGG | + | chr6_3:81834593-81834612 | Msa0961090:CDS | 55.0% | |
| CATTCGCGGTGAACGTGCTT+AGG | + | chr6_3:81834710-81834729 | Msa0961090:CDS | 55.0% | |
| GAACGTGCTTAGGGTGGTGA+AGG | + | chr6_3:81834720-81834739 | Msa0961090:exon | 55.0% | |
| GTCCTGGAACCGTCGCACTT+CGG | + | chr6_3:81834204-81834223 | Msa0961090:CDS | 60.0% | |
| TACCGAAGTGCGACGGTTCC+AGG | - | chr6_3:81834209-81834228 | None:intergenic | 60.0% | |
| GGAAGCAGCTGAGGCTTACC+TGG | + | chr6_3:81834602-81834621 | Msa0961090:CDS | 60.0% | |
| GCAGCTGAGGCTTACCTGGT+TGG | + | chr6_3:81834606-81834625 | Msa0961090:CDS | 60.0% | |
| ! | CAGCTTGCTCGTCGCATTCG+CGG | + | chr6_3:81834696-81834715 | Msa0961090:CDS | 60.0% |
| GTCCTGGAACCGTCGCACTT+CGG | + | chr6_3:81834204-81834223 | Msa0961090:CDS | 60.0% | |
| TACCGAAGTGCGACGGTTCC+AGG | - | chr6_3:81834209-81834228 | None:intergenic | 60.0% | |
| GGAAGCAGCTGAGGCTTACC+TGG | + | chr6_3:81834602-81834621 | Msa0961090:CDS | 60.0% | |
| GCAGCTGAGGCTTACCTGGT+TGG | + | chr6_3:81834606-81834625 | Msa0961090:CDS | 60.0% | |
| ! | CAGCTTGCTCGTCGCATTCG+CGG | + | chr6_3:81834696-81834715 | Msa0961090:CDS | 60.0% |
| CGCGGTGAACGTGCTTAGGG+TGG | + | chr6_3:81834714-81834733 | Msa0961090:exon | 65.0% | |
| CGCGGTGAACGTGCTTAGGG+TGG | + | chr6_3:81834714-81834733 | Msa0961090:exon | 65.0% | |
| !! | GCGGGATTGCGCCGACTCCA+AGG | + | chr6_3:81833998-81834017 | Msa0961090:CDS | 70.0% |
| !! | GCGGGATTGCGCCGACTCCA+AGG | + | chr6_3:81833998-81834017 | Msa0961090:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 81833940 | 81834992 | 81833940 | ID=Msa0961090;Name=Msa0961090 |
| chr6_3 | mRNA | 81833940 | 81834992 | 81833940 | ID=Msa0961090-mRNA-1;Parent=Msa0961090;Name=Msa0961090-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|1|0.8|1|0.75|0.6|5|234|145 |
| chr6_3 | exon | 81833940 | 81834038 | 81833940 | ID=Msa0961090-mRNA-1:exon:14669;Parent=Msa0961090-mRNA-1 |
| chr6_3 | exon | 81834149 | 81834225 | 81834149 | ID=Msa0961090-mRNA-1:exon:14670;Parent=Msa0961090-mRNA-1 |
| chr6_3 | exon | 81834369 | 81834459 | 81834369 | ID=Msa0961090-mRNA-1:exon:14671;Parent=Msa0961090-mRNA-1 |
| chr6_3 | exon | 81834561 | 81834878 | 81834561 | ID=Msa0961090-mRNA-1:exon:14672;Parent=Msa0961090-mRNA-1 |
| chr6_3 | exon | 81834906 | 81834992 | 81834906 | ID=Msa0961090-mRNA-1:exon:14673;Parent=Msa0961090-mRNA-1 |
| chr6_3 | CDS | 81833940 | 81834038 | 81833940 | ID=Msa0961090-mRNA-1:cds;Parent=Msa0961090-mRNA-1 |
| chr6_3 | CDS | 81834149 | 81834225 | 81834149 | ID=Msa0961090-mRNA-1:cds;Parent=Msa0961090-mRNA-1 |
| chr6_3 | CDS | 81834369 | 81834459 | 81834369 | ID=Msa0961090-mRNA-1:cds;Parent=Msa0961090-mRNA-1 |
| chr6_3 | CDS | 81834561 | 81834731 | 81834561 | ID=Msa0961090-mRNA-1:cds;Parent=Msa0961090-mRNA-1 |
| chr6_3 | three_prime_UTR | 81834732 | 81834878 | 81834732 | ID=Msa0961090-mRNA-1:three_prime_utr;Parent=Msa0961090-mRNA-1 |
| chr6_3 | three_prime_UTR | 81834906 | 81834992 | 81834906 | ID=Msa0961090-mRNA-1:three_prime_utr;Parent=Msa0961090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
