Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1077870 | XP_013450265.1 | 96.653 | 239 | 7 | 1 | 1 | 238 | 219 | 457 | 4.46e-169 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1077870 | sp|Q9SZA4|CDC21_ARATH | 80.672 | 238 | 46 | 0 | 1 | 238 | 220 | 457 | 9.57e-144 | 412 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1077870 | A0A072U570 | 96.653 | 239 | 7 | 1 | 1 | 238 | 219 | 457 | 2.13e-169 | 484 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0627410 | Msa1077870 | 0.809859 | 1.536440e-50 | -8.615850e-47 |
| Msa0678930 | Msa1077870 | 0.823767 | 1.159840e-53 | -8.615850e-47 |
| Msa0729000 | Msa1077870 | 0.806220 | 9.144141e-50 | -8.615850e-47 |
| Msa0741570 | Msa1077870 | 0.800863 | 1.180348e-48 | -8.615850e-47 |
| Msa0745060 | Msa1077870 | 0.803475 | 3.424715e-49 | -8.615850e-47 |
| Msa0236250 | Msa1077870 | 0.823886 | 1.088096e-53 | -8.615850e-47 |
| Msa0406120 | Msa1077870 | 0.826014 | 3.422270e-54 | -8.615850e-47 |
| Msa0456200 | Msa1077870 | 0.818734 | 1.679780e-52 | -8.615850e-47 |
| Msa0482620 | Msa1077870 | 0.811984 | 5.325188e-51 | -8.615850e-47 |
| Msa1024240 | Msa1077870 | 0.815046 | 1.129724e-51 | -8.615850e-47 |
| Msa1037130 | Msa1077870 | 0.833299 | 5.774412e-56 | -8.615850e-47 |
| Msa1077870 | Msa1084240 | 0.822242 | 2.629913e-53 | -8.615850e-47 |
| Msa1077870 | Msa1117080 | 0.824788 | 6.676888e-54 | -8.615850e-47 |
| Msa1077870 | Msa1146110 | 0.805586 | 1.242622e-49 | -8.615850e-47 |
| Msa1077870 | Msa1160670 | 0.812301 | 4.542920e-51 | -8.615850e-47 |
| Msa1077870 | Msa1160690 | 0.800312 | 1.529068e-48 | -8.615850e-47 |
| Msa1077870 | Msa1187940 | 0.852258 | 5.193877e-61 | -8.615850e-47 |
| Msa1077870 | Msa1187950 | 0.810540 | 1.095772e-50 | -8.615850e-47 |
| Msa1077870 | Msa1269670 | 0.801639 | 8.189575e-49 | -8.615850e-47 |
| Msa1077870 | Msa1270230 | 0.803436 | 3.489457e-49 | -8.615850e-47 |
| Msa1077870 | Msa1314280 | 0.817541 | 3.125932e-52 | -8.615850e-47 |
| Msa1077870 | Msa1425950 | 0.808703 | 2.718483e-50 | -8.615850e-47 |
| Msa1077870 | Msa1438250 | 0.845593 | 3.685946e-59 | -8.615850e-47 |
| Msa0326200 | Msa1077870 | 0.819348 | 1.217505e-52 | -8.615850e-47 |
| Msa0353190 | Msa1077870 | 0.823473 | 1.359021e-53 | -8.615850e-47 |
| Msa0363300 | Msa1077870 | 0.802760 | 4.815531e-49 | -8.615850e-47 |
| Msa0885290 | Msa1077870 | 0.815422 | 9.322482e-52 | -8.615850e-47 |
| Msa0887990 | Msa1077870 | 0.836130 | 1.120708e-56 | -8.615850e-47 |
| Msa0961090 | Msa1077870 | 0.805243 | 1.466264e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1077870 | MtrunA17_Chr7g0267961 | 96.653 | 239 | 7 | 1 | 1 | 238 | 219 | 457 | 4.10e-173 | 484 |
| Msa1077870 | MtrunA17_Chr5g0395821 | 78.151 | 238 | 52 | 0 | 1 | 238 | 217 | 454 | 1.60e-144 | 411 |
| Msa1077870 | MtrunA17_Chr3g0098921 | 76.151 | 239 | 56 | 1 | 1 | 238 | 221 | 459 | 1.59e-139 | 399 |
| Msa1077870 | MtrunA17_Chr7g0228191 | 83.111 | 225 | 36 | 1 | 1 | 223 | 106 | 330 | 1.81e-137 | 389 |
| Msa1077870 | MtrunA17_Chr7g0235181 | 77.917 | 240 | 46 | 4 | 1 | 238 | 192 | 426 | 1.57e-134 | 385 |
| Msa1077870 | MtrunA17_Chr7g0233651 | 74.370 | 238 | 52 | 1 | 1 | 238 | 203 | 431 | 1.80e-128 | 370 |
| Msa1077870 | MtrunA17_Chr7g0234591 | 75.417 | 240 | 54 | 2 | 1 | 238 | 200 | 436 | 3.57e-128 | 369 |
| Msa1077870 | MtrunA17_Chr2g0330601 | 66.809 | 235 | 45 | 4 | 4 | 236 | 166 | 369 | 4.11e-106 | 311 |
| Msa1077870 | MtrunA17_Chr2g0330681 | 70.681 | 191 | 37 | 4 | 4 | 192 | 196 | 369 | 8.38e-86 | 259 |
| Msa1077870 | MtrunA17_Chr2g0308501 | 54.338 | 219 | 91 | 4 | 4 | 217 | 99 | 313 | 2.42e-79 | 241 |
| Msa1077870 | MtrunA17_Chr3g0111961 | 54.460 | 213 | 91 | 2 | 3 | 215 | 259 | 465 | 4.56e-77 | 240 |
| Msa1077870 | MtrunA17_Chr4g0057131 | 50.235 | 213 | 100 | 1 | 4 | 216 | 249 | 455 | 4.48e-70 | 222 |
| Msa1077870 | MtrunA17_Chr5g0401671 | 22.897 | 214 | 110 | 3 | 5 | 212 | 388 | 552 | 4.31e-13 | 68.2 |
| Msa1077870 | MtrunA17_Chr2g0281451 | 25.743 | 202 | 116 | 8 | 3 | 187 | 97 | 281 | 4.89e-12 | 65.1 |
| Msa1077870 | MtrunA17_Chr5g0401661 | 23.077 | 208 | 117 | 4 | 5 | 212 | 478 | 642 | 1.11e-11 | 63.9 |
| Msa1077870 | MtrunA17_Chr4g0053651 | 26.554 | 177 | 87 | 4 | 36 | 212 | 402 | 535 | 4.15e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1077870 | AT4G33270.1 | 80.672 | 238 | 46 | 0 | 1 | 238 | 220 | 457 | 9.73e-145 | 412 |
| Msa1077870 | AT4G33260.1 | 80.672 | 238 | 46 | 0 | 1 | 238 | 210 | 447 | 2.07e-139 | 399 |
| Msa1077870 | AT4G33260.2 | 79.186 | 221 | 46 | 0 | 1 | 221 | 210 | 430 | 3.39e-129 | 372 |
| Msa1077870 | AT5G27570.1 | 75.417 | 240 | 57 | 2 | 1 | 238 | 211 | 450 | 4.39e-129 | 372 |
| Msa1077870 | AT5G27945.1 | 74.059 | 239 | 61 | 1 | 1 | 238 | 190 | 428 | 4.67e-128 | 369 |
| Msa1077870 | AT5G27080.1 | 72.500 | 240 | 64 | 2 | 1 | 238 | 203 | 442 | 7.39e-125 | 361 |
| Msa1077870 | AT5G26900.1 | 72.385 | 239 | 65 | 1 | 1 | 238 | 206 | 444 | 7.05e-124 | 359 |
| Msa1077870 | AT5G13840.1 | 52.113 | 213 | 96 | 1 | 3 | 215 | 254 | 460 | 7.64e-76 | 237 |
| Msa1077870 | AT5G13840.2 | 52.113 | 213 | 96 | 1 | 3 | 215 | 254 | 460 | 7.64e-76 | 237 |
| Msa1077870 | AT4G22910.1 | 50.704 | 213 | 99 | 1 | 4 | 216 | 257 | 463 | 1.19e-73 | 232 |
| Msa1077870 | AT4G11920.1 | 52.113 | 213 | 96 | 1 | 4 | 216 | 249 | 455 | 2.37e-73 | 231 |
| Msa1077870 | AT1G61210.2 | 27.344 | 128 | 81 | 4 | 4 | 129 | 98 | 215 | 3.24e-11 | 63.2 |
| Msa1077870 | AT1G61210.1 | 27.344 | 128 | 81 | 4 | 4 | 129 | 98 | 215 | 3.49e-11 | 63.2 |
| Msa1077870 | AT1G61210.3 | 27.344 | 128 | 81 | 4 | 4 | 129 | 98 | 215 | 3.57e-11 | 63.2 |
| Msa1077870 | AT5G25150.1 | 27.011 | 174 | 115 | 5 | 43 | 215 | 456 | 618 | 4.45e-11 | 62.8 |
| Msa1077870 | AT5G25150.2 | 27.011 | 174 | 115 | 5 | 43 | 215 | 456 | 618 | 4.79e-11 | 62.8 |
Find 75 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGGTAATCTACTGGTTTC+TGG | 0.081665 | 7_2:-76690521 | Msa1077870:CDS |
| CAGATGAAACTCTTAGATTT+TGG | 0.143277 | 7_2:-76690232 | Msa1077870:CDS |
| ACTGGCTTGGTGTCCCTTTC+AGG | 0.155506 | 7_2:-76690540 | Msa1077870:CDS |
| GCGCCTTTGCATGCTTCTGC+TGG | 0.182919 | 7_2:+76690194 | None:intergenic |
| CCTTTGGAAGTATCCTTCTA+TGG | 0.254046 | 7_2:-76690342 | Msa1077870:CDS |
| GTATCCTTCTATGGTGAAAA+TGG | 0.311467 | 7_2:-76690333 | Msa1077870:CDS |
| CGCCTTTGCATGCTTCTGCT+GGG | 0.338485 | 7_2:+76690195 | None:intergenic |
| AAGGGCTCATTATATGTCTT+TGG | 0.348479 | 7_2:+76690170 | None:intergenic |
| ACGATAATGTTGTTCACATA+TGG | 0.371186 | 7_2:-76690640 | Msa1077870:CDS |
| GTCATCATCTTCAACGAATA+CGG | 0.384451 | 7_2:+76690135 | None:intergenic |
| TTAGTAGCTCACGCTCATTC+TGG | 0.385492 | 7_2:+76690396 | None:intergenic |
| CACTTCGAGGGTGCTGTATA+TGG | 0.386478 | 7_2:-76690294 | Msa1077870:CDS |
| TCCCTTTCAGGGTAATCTAC+TGG | 0.394544 | 7_2:-76690528 | Msa1077870:CDS |
| AATCTACTGGTTTCTGGTGG+AGG | 0.416944 | 7_2:-76690515 | Msa1077870:CDS |
| CCGAGAACCAGCTTACCCTT+TGG | 0.427049 | 7_2:-76690358 | Msa1077870:CDS |
| CTCACATCGTTGAAACATAC+AGG | 0.428220 | 7_2:-76690730 | Msa1077870:CDS |
| CTGGCTTGGTGTCCCTTTCA+GGG | 0.431142 | 7_2:-76690539 | Msa1077870:CDS |
| CTACTGGTTTCTGGTGGAGG+TGG | 0.431389 | 7_2:-76690512 | Msa1077870:CDS |
| CTGGTTTCTGGTGGAGGTGG+AGG | 0.433746 | 7_2:-76690509 | Msa1077870:CDS |
| CAAGAGTGGGTTCACTGGCT+TGG | 0.451387 | 7_2:-76690820 | Msa1077870:CDS |
| CCGATGGCTTCACAGGTTTG+AGG | 0.457594 | 7_2:-76690585 | Msa1077870:CDS |
| AACAATCATATTCTGACAAT+AGG | 0.461032 | 7_2:-76690797 | Msa1077870:CDS |
| CTCAAACCTGTGAAGCCATC+GGG | 0.461565 | 7_2:+76690586 | None:intergenic |
| CGCAAGTATGTGCTCTGCTA+TGG | 0.476958 | 7_2:-76690421 | Msa1077870:CDS |
| GATGCCACTGTACACCCATC+TGG | 0.480407 | 7_2:+76690263 | None:intergenic |
| ATCTCAACGGTCACACTTCG+AGG | 0.480528 | 7_2:-76690307 | Msa1077870:CDS |
| CAGAGCAAGAGTGGGTTCAC+TGG | 0.481190 | 7_2:-76690825 | Msa1077870:CDS |
| CCAAAGGGTAAGCTGGTTCT+CGG | 0.481991 | 7_2:+76690358 | None:intergenic |
| CACCTACCCGATGGCTTCAC+AGG | 0.485174 | 7_2:-76690592 | Msa1077870:CDS |
| CGATAATGTTGTTCACATAT+GGG | 0.487900 | 7_2:-76690639 | Msa1077870:CDS |
| GATACTTCCAAAGGGTAAGC+TGG | 0.503616 | 7_2:+76690351 | None:intergenic |
| AACATACAGGGGACACAACC+AGG | 0.511067 | 7_2:-76690717 | Msa1077870:CDS |
| CTGCTGTGAAGGCACTGGCT+TGG | 0.516266 | 7_2:-76690553 | Msa1077870:CDS |
| GGACACAACCAGGAGATTTG+TGG | 0.517610 | 7_2:-76690707 | Msa1077870:CDS |
| AGGAGATTTGTGGGCTCAAG+TGG | 0.519954 | 7_2:-76690697 | Msa1077870:CDS |
| ACCAGTAGATTACCCTGAAA+GGG | 0.520427 | 7_2:+76690527 | None:intergenic |
| AGCCCAGCAGAAGCATGCAA+AGG | 0.528444 | 7_2:-76690197 | Msa1077870:CDS |
| GGGCTCAAGTGGTCACCCTC+AGG | 0.528586 | 7_2:-76690686 | Msa1077870:CDS |
| CCTCAAACCTGTGAAGCCAT+CGG | 0.529110 | 7_2:+76690585 | None:intergenic |
| TATTCTGACAATAGGAGGAA+TGG | 0.531705 | 7_2:-76690789 | Msa1077870:CDS |
| AACCAGTAGATTACCCTGAA+AGG | 0.532390 | 7_2:+76690526 | None:intergenic |
| GACACAACCAGGAGATTTGT+GGG | 0.536916 | 7_2:-76690706 | Msa1077870:CDS |
| TCATCATCTTCAACGAATAC+GGG | 0.547121 | 7_2:+76690136 | None:intergenic |
| GGGTGGACACAGAGCAAGAG+TGG | 0.549117 | 7_2:-76690834 | Msa1077870:CDS |
| AATCATATTCTGACAATAGG+AGG | 0.552234 | 7_2:-76690794 | Msa1077870:CDS |
| TATATGGCGCAAAGTCCAGA+TGG | 0.558802 | 7_2:-76690278 | Msa1077870:CDS |
| ACTTGAGCCCACAAATCTCC+TGG | 0.559626 | 7_2:+76690699 | None:intergenic |
| CGTGAGCTACTAAGCTCACA+TGG | 0.568122 | 7_2:-76690386 | Msa1077870:CDS |
| CATAGCTGCTGTGAAGGCAC+TGG | 0.582355 | 7_2:-76690558 | Msa1077870:CDS |
| CATAGAAGGATACTTCCAAA+GGG | 0.584766 | 7_2:+76690343 | None:intergenic |
| CTTCAAATTCACCTACCCGA+TGG | 0.586686 | 7_2:-76690601 | Msa1077870:CDS |
| GGTAATCTACTGGTTTCTGG+TGG | 0.587651 | 7_2:-76690518 | Msa1077870:CDS |
| TCACATATGGGATAGATCTG+TGG | 0.596581 | 7_2:-76690627 | Msa1077870:CDS |
| GGACAACAATTGTCAAGTGG+TGG | 0.599505 | 7_2:-76690665 | Msa1077870:CDS |
| ATACGGGTGAAATTAGCAAA+GGG | 0.600657 | 7_2:+76690152 | None:intergenic |
| GGAACACATAGCTGCTGTGA+AGG | 0.609121 | 7_2:-76690564 | Msa1077870:CDS |
| CTGACAATAGGAGGAATGGA+TGG | 0.610393 | 7_2:-76690785 | Msa1077870:CDS |
| TCTCAACGGTCACACTTCGA+GGG | 0.613321 | 7_2:-76690306 | Msa1077870:CDS |
| GTGAAAATGGCAGATCTCAA+CGG | 0.613838 | 7_2:-76690320 | Msa1077870:CDS |
| AATACGGGTGAAATTAGCAA+AGG | 0.619999 | 7_2:+76690151 | None:intergenic |
| CCATAGAAGGATACTTCCAA+AGG | 0.623454 | 7_2:+76690342 | None:intergenic |
| AAGCTGTGGAACACACACAC+TGG | 0.630912 | 7_2:-76690473 | Msa1077870:CDS |
| GTGATCATTGCATTAAGCTG+TGG | 0.635919 | 7_2:-76690487 | Msa1077870:CDS |
| CAGCTAAGGGTAATGAAGGG+TGG | 0.636371 | 7_2:-76690851 | None:intergenic |
| ACTTGACAATTGTTGTCCTG+AGG | 0.654097 | 7_2:+76690670 | None:intergenic |
| TCACATCGTTGAAACATACA+GGG | 0.656486 | 7_2:-76690729 | Msa1077870:CDS |
| CTTGACAATTGTTGTCCTGA+GGG | 0.657303 | 7_2:+76690671 | None:intergenic |
| TCAGGACAACAATTGTCAAG+TGG | 0.664718 | 7_2:-76690668 | Msa1077870:CDS |
| TGGGTGTACAGTGGCATCTG+CGG | 0.666837 | 7_2:-76690258 | Msa1077870:CDS |
| GGTGGACACAGAGCAAGAGT+GGG | 0.681424 | 7_2:-76690833 | Msa1077870:CDS |
| CTGCAGCTAAGGGTAATGAA+GGG | 0.685991 | 7_2:-76690854 | None:intergenic |
| AAGTCCAGATGGGTGTACAG+TGG | 0.686450 | 7_2:-76690267 | Msa1077870:CDS |
| ATATGGCGCAAAGTCCAGAT+GGG | 0.692355 | 7_2:-76690277 | Msa1077870:CDS |
| AACCTGTGAAGCCATCGGGT+AGG | 0.692902 | 7_2:+76690590 | None:intergenic |
| CACATCGTTGAAACATACAG+GGG | 0.758385 | 7_2:-76690728 | Msa1077870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AACAATCATATTCTGACAAT+AGG | - | chr7_2:76690187-76690206 | Msa1077870:CDS | 25.0% |
| !!! | TTAGATTTTGGAATGTCTTT+GGG | - | chr7_2:76690764-76690783 | Msa1077870:CDS | 25.0% |
| AATCATATTCTGACAATAGG+AGG | - | chr7_2:76690190-76690209 | Msa1077870:CDS | 30.0% | |
| ACGATAATGTTGTTCACATA+TGG | - | chr7_2:76690344-76690363 | Msa1077870:CDS | 30.0% | |
| CGATAATGTTGTTCACATAT+GGG | - | chr7_2:76690345-76690364 | Msa1077870:CDS | 30.0% | |
| ! | CAGATGAAACTCTTAGATTT+TGG | - | chr7_2:76690752-76690771 | Msa1077870:CDS | 30.0% |
| !!! | CTTAGATTTTGGAATGTCTT+TGG | - | chr7_2:76690763-76690782 | Msa1077870:CDS | 30.0% |
| TATTCTGACAATAGGAGGAA+TGG | - | chr7_2:76690195-76690214 | Msa1077870:CDS | 35.0% | |
| TCACATCGTTGAAACATACA+GGG | - | chr7_2:76690255-76690274 | Msa1077870:CDS | 35.0% | |
| CATAGAAGGATACTTCCAAA+GGG | + | chr7_2:76690644-76690663 | None:intergenic | 35.0% | |
| GTATCCTTCTATGGTGAAAA+TGG | - | chr7_2:76690651-76690670 | Msa1077870:CDS | 35.0% | |
| AAGGGCTCATTATATGTCTT+TGG | + | chr7_2:76690817-76690836 | None:intergenic | 35.0% | |
| ATACGGGTGAAATTAGCAAA+GGG | + | chr7_2:76690835-76690854 | None:intergenic | 35.0% | |
| AATACGGGTGAAATTAGCAA+AGG | + | chr7_2:76690836-76690855 | None:intergenic | 35.0% | |
| CTCACATCGTTGAAACATAC+AGG | - | chr7_2:76690254-76690273 | Msa1077870:CDS | 40.0% | |
| CACATCGTTGAAACATACAG+GGG | - | chr7_2:76690256-76690275 | Msa1077870:CDS | 40.0% | |
| CTTGACAATTGTTGTCCTGA+GGG | + | chr7_2:76690316-76690335 | None:intergenic | 40.0% | |
| ACTTGACAATTGTTGTCCTG+AGG | + | chr7_2:76690317-76690336 | None:intergenic | 40.0% | |
| TCAGGACAACAATTGTCAAG+TGG | - | chr7_2:76690316-76690335 | Msa1077870:CDS | 40.0% | |
| TCACATATGGGATAGATCTG+TGG | - | chr7_2:76690357-76690376 | Msa1077870:CDS | 40.0% | |
| ACCAGTAGATTACCCTGAAA+GGG | + | chr7_2:76690460-76690479 | None:intergenic | 40.0% | |
| AACCAGTAGATTACCCTGAA+AGG | + | chr7_2:76690461-76690480 | None:intergenic | 40.0% | |
| GTGATCATTGCATTAAGCTG+TGG | - | chr7_2:76690497-76690516 | Msa1077870:CDS | 40.0% | |
| CCATAGAAGGATACTTCCAA+AGG | + | chr7_2:76690645-76690664 | None:intergenic | 40.0% | |
| !! | CCTTTGGAAGTATCCTTCTA+TGG | - | chr7_2:76690642-76690661 | Msa1077870:CDS | 40.0% |
| !!! | TCTGCCATTTTCACCATAGA+AGG | + | chr7_2:76690658-76690677 | None:intergenic | 40.0% |
| GTGAAAATGGCAGATCTCAA+CGG | - | chr7_2:76690664-76690683 | Msa1077870:CDS | 40.0% | |
| CTGACAATAGGAGGAATGGA+TGG | - | chr7_2:76690199-76690218 | Msa1077870:CDS | 45.0% | |
| GACACAACCAGGAGATTTGT+GGG | - | chr7_2:76690278-76690297 | Msa1077870:CDS | 45.0% | |
| GGACAACAATTGTCAAGTGG+TGG | - | chr7_2:76690319-76690338 | Msa1077870:CDS | 45.0% | |
| CTTCAAATTCACCTACCCGA+TGG | - | chr7_2:76690383-76690402 | Msa1077870:CDS | 45.0% | |
| TCCCTTTCAGGGTAATCTAC+TGG | - | chr7_2:76690456-76690475 | Msa1077870:CDS | 45.0% | |
| !! | CAGGGTAATCTACTGGTTTC+TGG | - | chr7_2:76690463-76690482 | Msa1077870:CDS | 45.0% |
| !! | GGTAATCTACTGGTTTCTGG+TGG | - | chr7_2:76690466-76690485 | Msa1077870:CDS | 45.0% |
| !! | AATCTACTGGTTTCTGGTGG+AGG | - | chr7_2:76690469-76690488 | Msa1077870:CDS | 45.0% |
| TTAGTAGCTCACGCTCATTC+TGG | + | chr7_2:76690591-76690610 | None:intergenic | 45.0% | |
| GATACTTCCAAAGGGTAAGC+TGG | + | chr7_2:76690636-76690655 | None:intergenic | 45.0% | |
| TATATGGCGCAAAGTCCAGA+TGG | - | chr7_2:76690706-76690725 | Msa1077870:CDS | 45.0% | |
| ATATGGCGCAAAGTCCAGAT+GGG | - | chr7_2:76690707-76690726 | Msa1077870:CDS | 45.0% | |
| AACATACAGGGGACACAACC+AGG | - | chr7_2:76690267-76690286 | Msa1077870:CDS | 50.0% | |
| GGACACAACCAGGAGATTTG+TGG | - | chr7_2:76690277-76690296 | Msa1077870:CDS | 50.0% | |
| ACTTGAGCCCACAAATCTCC+TGG | + | chr7_2:76690288-76690307 | None:intergenic | 50.0% | |
| AGGAGATTTGTGGGCTCAAG+TGG | - | chr7_2:76690287-76690306 | Msa1077870:CDS | 50.0% | |
| CTCAAACCTGTGAAGCCATC+GGG | + | chr7_2:76690401-76690420 | None:intergenic | 50.0% | |
| CCTCAAACCTGTGAAGCCAT+CGG | + | chr7_2:76690402-76690421 | None:intergenic | 50.0% | |
| GGAACACATAGCTGCTGTGA+AGG | - | chr7_2:76690420-76690439 | Msa1077870:CDS | 50.0% | |
| AAGCTGTGGAACACACACAC+TGG | - | chr7_2:76690511-76690530 | Msa1077870:CDS | 50.0% | |
| CGCAAGTATGTGCTCTGCTA+TGG | - | chr7_2:76690563-76690582 | Msa1077870:CDS | 50.0% | |
| CGTGAGCTACTAAGCTCACA+TGG | - | chr7_2:76690598-76690617 | Msa1077870:CDS | 50.0% | |
| ! | CCAAAGGGTAAGCTGGTTCT+CGG | + | chr7_2:76690629-76690648 | None:intergenic | 50.0% |
| ATCTCAACGGTCACACTTCG+AGG | - | chr7_2:76690677-76690696 | Msa1077870:CDS | 50.0% | |
| TCTCAACGGTCACACTTCGA+GGG | - | chr7_2:76690678-76690697 | Msa1077870:CDS | 50.0% | |
| !! | CACTTCGAGGGTGCTGTATA+TGG | - | chr7_2:76690690-76690709 | Msa1077870:CDS | 50.0% |
| AAGTCCAGATGGGTGTACAG+TGG | - | chr7_2:76690717-76690736 | Msa1077870:CDS | 50.0% | |
| GGTGGACACAGAGCAAGAGT+GGG | - | chr7_2:76690151-76690170 | Msa1077870:CDS | 55.0% | |
| ! | CAGAGCAAGAGTGGGTTCAC+TGG | - | chr7_2:76690159-76690178 | Msa1077870:CDS | 55.0% |
| ! | CAAGAGTGGGTTCACTGGCT+TGG | - | chr7_2:76690164-76690183 | Msa1077870:CDS | 55.0% |
| AACCTGTGAAGCCATCGGGT+AGG | + | chr7_2:76690397-76690416 | None:intergenic | 55.0% | |
| CCGATGGCTTCACAGGTTTG+AGG | - | chr7_2:76690399-76690418 | Msa1077870:CDS | 55.0% | |
| ! | CATAGCTGCTGTGAAGGCAC+TGG | - | chr7_2:76690426-76690445 | Msa1077870:CDS | 55.0% |
| !! | ACTGGCTTGGTGTCCCTTTC+AGG | - | chr7_2:76690444-76690463 | Msa1077870:CDS | 55.0% |
| !! | CTGGCTTGGTGTCCCTTTCA+GGG | - | chr7_2:76690445-76690464 | Msa1077870:CDS | 55.0% |
| !! | CTACTGGTTTCTGGTGGAGG+TGG | - | chr7_2:76690472-76690491 | Msa1077870:CDS | 55.0% |
| CCGAGAACCAGCTTACCCTT+TGG | - | chr7_2:76690626-76690645 | Msa1077870:CDS | 55.0% | |
| GATGCCACTGTACACCCATC+TGG | + | chr7_2:76690724-76690743 | None:intergenic | 55.0% | |
| TGGGTGTACAGTGGCATCTG+CGG | - | chr7_2:76690726-76690745 | Msa1077870:CDS | 55.0% | |
| ! | AGCCCAGCAGAAGCATGCAA+AGG | - | chr7_2:76690787-76690806 | Msa1077870:CDS | 55.0% |
| CGCCTTTGCATGCTTCTGCT+GGG | + | chr7_2:76690792-76690811 | None:intergenic | 55.0% | |
| GGGTGGACACAGAGCAAGAG+TGG | - | chr7_2:76690150-76690169 | Msa1077870:CDS | 60.0% | |
| CACCTACCCGATGGCTTCAC+AGG | - | chr7_2:76690392-76690411 | Msa1077870:CDS | 60.0% | |
| !! | CTGCTGTGAAGGCACTGGCT+TGG | - | chr7_2:76690431-76690450 | Msa1077870:CDS | 60.0% |
| !! | CTGGTTTCTGGTGGAGGTGG+AGG | - | chr7_2:76690475-76690494 | Msa1077870:CDS | 60.0% |
| GCGCCTTTGCATGCTTCTGC+TGG | + | chr7_2:76690793-76690812 | None:intergenic | 60.0% | |
| GGGCTCAAGTGGTCACCCTC+AGG | - | chr7_2:76690298-76690317 | Msa1077870:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 76690145 | 76690861 | 76690145 | ID=Msa1077870;Name=Msa1077870 |
| chr7_2 | mRNA | 76690145 | 76690861 | 76690145 | ID=Msa1077870-mRNA-1;Parent=Msa1077870;Name=Msa1077870-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|238 |
| chr7_2 | exon | 76690145 | 76690861 | 76690145 | ID=Msa1077870-mRNA-1:exon:18679;Parent=Msa1077870-mRNA-1 |
| chr7_2 | CDS | 76690145 | 76690861 | 76690145 | ID=Msa1077870-mRNA-1:cds;Parent=Msa1077870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
