Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1160690 | XP_003624978.2 | 95.349 | 43 | 2 | 0 | 1 | 43 | 352 | 394 | 4.12e-19 | 88.6 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1160690 | sp|Q6NLB1|FB118_ARATH | 60.465 | 43 | 17 | 0 | 1 | 43 | 329 | 371 | 8.88e-13 | 62.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1160690 | Q2HSY4 | 95.349 | 43 | 2 | 0 | 1 | 43 | 352 | 394 | 1.97e-19 | 88.6 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0661870 | Msa1160690 | 0.824351 | 8.459873e-54 | -8.615850e-47 |
Msa0673450 | Msa1160690 | 0.802959 | 4.380708e-49 | -8.615850e-47 |
Msa0678930 | Msa1160690 | 0.810693 | 1.015297e-50 | -8.615850e-47 |
Msa0697060 | Msa1160690 | 0.814402 | 1.568739e-51 | -8.615850e-47 |
Msa0726140 | Msa1160690 | 0.809175 | 2.154186e-50 | -8.615850e-47 |
Msa0741570 | Msa1160690 | 0.818209 | 2.208480e-52 | -8.615850e-47 |
Msa0741990 | Msa1160690 | 0.803818 | 2.907902e-49 | -8.615850e-47 |
Msa0745060 | Msa1160690 | 0.810171 | 1.316442e-50 | -8.615850e-47 |
Msa0789250 | Msa1160690 | 0.801851 | 7.407240e-49 | -8.615850e-47 |
Msa0811080 | Msa1160690 | 0.804065 | 2.583212e-49 | -8.615850e-47 |
Msa0822650 | Msa1160690 | 0.811728 | 6.054152e-51 | -8.615850e-47 |
Msa0825860 | Msa1160690 | 0.809418 | 1.911112e-50 | -8.615850e-47 |
Msa0142220 | Msa1160690 | 0.813241 | 2.827354e-51 | -8.615850e-47 |
Msa0199240 | Msa1160690 | 0.824022 | 1.011000e-53 | -8.615850e-47 |
Msa0406120 | Msa1160690 | 0.807363 | 5.242682e-50 | -8.615850e-47 |
Msa0452620 | Msa1160690 | 0.800320 | 1.523202e-48 | -8.615850e-47 |
Msa0453120 | Msa1160690 | 0.809456 | 1.875059e-50 | -8.615850e-47 |
Msa0482620 | Msa1160690 | 0.825202 | 5.330439e-54 | -8.615850e-47 |
Msa1024240 | Msa1160690 | 0.827311 | 1.677672e-54 | -8.615850e-47 |
Msa1024370 | Msa1160690 | 0.811400 | 7.134133e-51 | -8.615850e-47 |
Msa1077870 | Msa1160690 | 0.800312 | 1.529068e-48 | -8.615850e-47 |
Msa1092990 | Msa1160690 | 0.805727 | 1.160871e-49 | -8.615850e-47 |
Msa0256440 | Msa1160690 | 0.807194 | 5.693129e-50 | -8.615850e-47 |
Msa0326200 | Msa1160690 | 0.801114 | 1.049087e-48 | -8.615850e-47 |
Msa0353190 | Msa1160690 | 0.801663 | 8.095912e-49 | -8.615850e-47 |
Msa1136090 | Msa1160690 | 0.845108 | 4.987604e-59 | -8.615850e-47 |
Msa1146110 | Msa1160690 | 0.811265 | 7.633906e-51 | -8.615850e-47 |
Msa1160620 | Msa1160690 | 0.804749 | 1.860598e-49 | -8.615850e-47 |
Msa1160670 | Msa1160690 | 0.886820 | 2.452585e-72 | -8.615850e-47 |
Msa1160690 | Msa1187940 | 0.817631 | 2.983548e-52 | -8.615850e-47 |
Msa1160690 | Msa1187950 | 0.848476 | 5.982986e-60 | -8.615850e-47 |
Msa1160690 | Msa1270230 | 0.803536 | 3.325906e-49 | -8.615850e-47 |
Msa1160690 | Msa1285930 | 0.803866 | 2.841545e-49 | -8.615850e-47 |
Msa1160690 | Msa1297210 | 0.804484 | 2.112952e-49 | -8.615850e-47 |
Msa1160690 | Msa1397610 | 0.810330 | 1.216008e-50 | -8.615850e-47 |
Msa1160690 | Msa1438250 | 0.833209 | 6.083279e-56 | -8.615850e-47 |
Msa0485370 | Msa1160690 | 0.800007 | 1.763852e-48 | -8.615850e-47 |
Msa0502270 | Msa1160690 | 0.816915 | 4.323529e-52 | -8.615850e-47 |
Msa0506270 | Msa1160690 | 0.800813 | 1.208527e-48 | -8.615850e-47 |
Msa0885280 | Msa1160690 | 0.843375 | 1.456945e-58 | -8.615850e-47 |
Msa0885290 | Msa1160690 | 0.845402 | 4.153009e-59 | -8.615850e-47 |
Msa0886750 | Msa1160690 | 0.809413 | 1.915454e-50 | -8.615850e-47 |
Msa0887990 | Msa1160690 | 0.818814 | 1.610945e-52 | -8.615850e-47 |
Msa0922720 | Msa1160690 | 0.807350 | 5.276786e-50 | -8.615850e-47 |
Msa0954910 | Msa1160690 | 0.803668 | 3.123991e-49 | -8.615850e-47 |
Msa0961090 | Msa1160690 | 0.808760 | 2.643143e-50 | -8.615850e-47 |
Msa0969450 | Msa1160690 | 0.818151 | 2.276387e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1160690 | MtrunA17_Chr7g0256121 | 95.349 | 43 | 2 | 0 | 1 | 43 | 352 | 394 | 3.79e-23 | 88.6 |
Msa1160690 | MtrunA17_Chr3g0094081 | 59.524 | 42 | 17 | 0 | 2 | 43 | 334 | 375 | 6.50e-13 | 60.1 |
Msa1160690 | MtrunA17_Chr5g0441461 | 58.974 | 39 | 16 | 0 | 2 | 40 | 358 | 396 | 5.91e-12 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1160690 | AT2G26850.1 | 60.465 | 43 | 17 | 0 | 1 | 43 | 329 | 371 | 9.03e-14 | 62.8 |
Msa1160690 | AT2G41170.1 | 55.814 | 43 | 19 | 0 | 1 | 43 | 329 | 371 | 2.88e-12 | 58.5 |
Msa1160690 | AT2G41170.2 | 55.814 | 43 | 19 | 0 | 1 | 43 | 362 | 404 | 2.89e-12 | 58.5 |
Find 27 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAATAAGGAGAAGAAATA+AGG | 0.280654 | 7_4:+50744359 | Msa1160690:five_prime_UTR |
ATGTGAATGTAAAGGCTTAA+AGG | 0.285660 | 7_4:+50745099 | Msa1160690:three_prime_UTR |
GGTGACAGATACAGTGATTT+TGG | 0.287163 | 7_4:+50744851 | Msa1160690:intron |
GAACAAGGAAATGAAATAAA+AGG | 0.299495 | 7_4:+50744939 | Msa1160690:CDS |
AATTCAGTGGAGAAGAAATA+AGG | 0.338860 | 7_4:+50744346 | Msa1160690:five_prime_UTR |
TCAAGTTTAGACCTATAGTT+AGG | 0.348513 | 7_4:-50745155 | None:intergenic |
GTATAGTGTCATTGGTCATT+TGG | 0.367045 | 7_4:+50744689 | Msa1160690:five_prime_UTR |
CATTGCCAATGTCACAATAA+AGG | 0.376211 | 7_4:+50744735 | Msa1160690:five_prime_UTR |
TGCTTAGATGACTTAAAGCC+TGG | 0.448701 | 7_4:+50744311 | Msa1160690:five_prime_UTR |
TTACAAAGTGGAAGAAACTT+TGG | 0.456123 | 7_4:+50745003 | Msa1160690:CDS |
GGTTGGTGGTATAGTGTCAT+TGG | 0.469917 | 7_4:+50744681 | Msa1160690:intron |
TCTTACCTTTATTGTGACAT+TGG | 0.477470 | 7_4:-50744740 | None:intergenic |
TGAATTTCAACATGATCTCC+AGG | 0.484749 | 7_4:-50744329 | None:intergenic |
CTTTATTGTGACATTGGCAA+TGG | 0.507841 | 7_4:-50744734 | None:intergenic |
CTAAACTTGAAAATTTACAT+TGG | 0.512613 | 7_4:+50745168 | Msa1160690:three_prime_UTR |
TTGGAAACATGTCAAGGTGA+TGG | 0.516906 | 7_4:+50744708 | Msa1160690:five_prime_UTR |
TTCCTAAAATGTGAATGTAA+AGG | 0.517982 | 7_4:+50745091 | Msa1160690:three_prime_UTR |
TGTCACTCATTCCTAACTAT+AGG | 0.520822 | 7_4:+50745144 | Msa1160690:three_prime_UTR |
TGGAAACATGTCAAGGTGAT+GGG | 0.523680 | 7_4:+50744709 | Msa1160690:five_prime_UTR |
GAGTTCACACAATACACAGC+TGG | 0.557018 | 7_4:+50744873 | Msa1160690:five_prime_UTR |
AATACACAGCTGGCTCAAGA+TGG | 0.566869 | 7_4:+50744883 | Msa1160690:five_prime_UTR |
GAGATCATGTTGAAATTCAG+TGG | 0.569671 | 7_4:+50744333 | Msa1160690:five_prime_UTR |
GTACACTATTGCTTATGTAG+TGG | 0.615007 | 7_4:-50745221 | None:intergenic |
GGTCATTTGGAAACATGTCA+AGG | 0.617542 | 7_4:+50744702 | Msa1160690:five_prime_UTR |
AATCAGAAAGTTGCATAGCA+AGG | 0.622859 | 7_4:+50744974 | Msa1160690:CDS |
GCATACAAGACAATGCTAAG+TGG | 0.630540 | 7_4:+50745334 | Msa1160690:three_prime_UTR |
GCAAGGAAGAGATTACAAAG+TGG | 0.674384 | 7_4:+50744991 | Msa1160690:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAGTTAATATTCT+AGG | - | chr7_4:50744487-50744506 | None:intergenic | 10.0% |
!!! | TTTTAAAAATGTTTTGTTAT+AGG | + | chr7_4:50744660-50744679 | Msa1160690:intron | 10.0% |
!! | AAAAAAAAAGTTAATATTCT+AGG | - | chr7_4:50744487-50744506 | None:intergenic | 10.0% |
!!! | TTTTAAAAATGTTTTGTTAT+AGG | + | chr7_4:50744660-50744679 | Msa1160690:intron | 10.0% |
!!! | TAACTTTTTTTTTTTTGAAG+AGG | + | chr7_4:50744494-50744513 | Msa1160690:intron | 15.0% |
!!! | AACTTTTTTTTTTTTGAAGA+GGG | + | chr7_4:50744495-50744514 | Msa1160690:intron | 15.0% |
!!! | TTGATAATAGTTAATATTCT+AGG | - | chr7_4:50744522-50744541 | None:intergenic | 15.0% |
!! | TACAATGAAACATAATTTAA+GGG | - | chr7_4:50744805-50744824 | None:intergenic | 15.0% |
!! | ATACAATGAAACATAATTTA+AGG | - | chr7_4:50744806-50744825 | None:intergenic | 15.0% |
!!! | TAACTTTTTTTTTTTTGAAG+AGG | + | chr7_4:50744494-50744513 | Msa1160690:intron | 15.0% |
!!! | AACTTTTTTTTTTTTGAAGA+GGG | + | chr7_4:50744495-50744514 | Msa1160690:intron | 15.0% |
!!! | TTGATAATAGTTAATATTCT+AGG | - | chr7_4:50744522-50744541 | None:intergenic | 15.0% |
!! | TACAATGAAACATAATTTAA+GGG | - | chr7_4:50744805-50744824 | None:intergenic | 15.0% |
!! | ATACAATGAAACATAATTTA+AGG | - | chr7_4:50744806-50744825 | None:intergenic | 15.0% |
!!! | AAAAATGTTTTGTTATAGGT+TGG | + | chr7_4:50744664-50744683 | Msa1160690:intron | 20.0% |
!! | ACAATGAAACATAATTTAAG+GGG | - | chr7_4:50744804-50744823 | None:intergenic | 20.0% |
!! | GATGATTAAATCAATAATGT+TGG | + | chr7_4:50744830-50744849 | Msa1160690:intron | 20.0% |
!!! | TGAAATAAAAGGTTTTTATG+CGG | + | chr7_4:50744950-50744969 | Msa1160690:CDS | 20.0% |
!! | CTAAACTTGAAAATTTACAT+TGG | + | chr7_4:50745168-50745187 | Msa1160690:three_prime_UTR | 20.0% |
!!! | AAAAATGTTTTGTTATAGGT+TGG | + | chr7_4:50744664-50744683 | Msa1160690:intron | 20.0% |
!! | ACAATGAAACATAATTTAAG+GGG | - | chr7_4:50744804-50744823 | None:intergenic | 20.0% |
!! | GATGATTAAATCAATAATGT+TGG | + | chr7_4:50744830-50744849 | Msa1160690:intron | 20.0% |
!!! | TGAAATAAAAGGTTTTTATG+CGG | + | chr7_4:50744950-50744969 | Msa1160690:CDS | 20.0% |
!! | CTAAACTTGAAAATTTACAT+TGG | + | chr7_4:50745168-50745187 | Msa1160690:three_prime_UTR | 20.0% |
! | AGAAATAAGGAGAAGAAATA+AGG | + | chr7_4:50744359-50744378 | Msa1160690:five_prime_UTR | 25.0% |
! | TATCAATGTTTGTGATACAT+TGG | + | chr7_4:50744536-50744555 | Msa1160690:intron | 25.0% |
! | AATGAAACATAATTTAAGGG+GGG | - | chr7_4:50744802-50744821 | None:intergenic | 25.0% |
! | CAATGAAACATAATTTAAGG+GGG | - | chr7_4:50744803-50744822 | None:intergenic | 25.0% |
! | AGAAAAAATCATAGAGAACA+AGG | + | chr7_4:50744924-50744943 | Msa1160690:CDS | 25.0% |
! | GAACAAGGAAATGAAATAAA+AGG | + | chr7_4:50744939-50744958 | Msa1160690:CDS | 25.0% |
!! | GAAATAAAAGGTTTTTATGC+GGG | + | chr7_4:50744951-50744970 | Msa1160690:CDS | 25.0% |
!!! | TGCTATTCAACATTTTTTGT+TGG | - | chr7_4:50745029-50745048 | None:intergenic | 25.0% |
! | TTCCTAAAATGTGAATGTAA+AGG | + | chr7_4:50745091-50745110 | Msa1160690:three_prime_UTR | 25.0% |
! | AGAAATAAGGAGAAGAAATA+AGG | + | chr7_4:50744359-50744378 | Msa1160690:five_prime_UTR | 25.0% |
! | TATCAATGTTTGTGATACAT+TGG | + | chr7_4:50744536-50744555 | Msa1160690:intron | 25.0% |
! | AATGAAACATAATTTAAGGG+GGG | - | chr7_4:50744802-50744821 | None:intergenic | 25.0% |
! | CAATGAAACATAATTTAAGG+GGG | - | chr7_4:50744803-50744822 | None:intergenic | 25.0% |
! | AGAAAAAATCATAGAGAACA+AGG | + | chr7_4:50744924-50744943 | Msa1160690:CDS | 25.0% |
! | GAACAAGGAAATGAAATAAA+AGG | + | chr7_4:50744939-50744958 | Msa1160690:CDS | 25.0% |
!! | GAAATAAAAGGTTTTTATGC+GGG | + | chr7_4:50744951-50744970 | Msa1160690:CDS | 25.0% |
!!! | TGCTATTCAACATTTTTTGT+TGG | - | chr7_4:50745029-50745048 | None:intergenic | 25.0% |
! | TTCCTAAAATGTGAATGTAA+AGG | + | chr7_4:50745091-50745110 | Msa1160690:three_prime_UTR | 25.0% |
AATTCAGTGGAGAAGAAATA+AGG | + | chr7_4:50744346-50744365 | Msa1160690:five_prime_UTR | 30.0% | |
TTTATGCGACTATTTAGAAG+AGG | - | chr7_4:50744425-50744444 | None:intergenic | 30.0% | |
TGTAGTCGATAAACAAAAGT+TGG | + | chr7_4:50744451-50744470 | Msa1160690:intron | 30.0% | |
GTTAATATTCTAGGTCTGTT+AGG | - | chr7_4:50744478-50744497 | None:intergenic | 30.0% | |
!! | AATGTTTTGTTATAGGTTGG+TGG | + | chr7_4:50744667-50744686 | Msa1160690:intron | 30.0% |
TCTTACCTTTATTGTGACAT+TGG | - | chr7_4:50744743-50744762 | None:intergenic | 30.0% | |
AGAAGAATTAAAATGCATGC+TGG | - | chr7_4:50744773-50744792 | None:intergenic | 30.0% | |
TTACAAAGTGGAAGAAACTT+TGG | + | chr7_4:50745003-50745022 | Msa1160690:CDS | 30.0% | |
! | AGCCTTTACATTCACATTTT+AGG | - | chr7_4:50745096-50745115 | None:intergenic | 30.0% |
ATGTGAATGTAAAGGCTTAA+AGG | + | chr7_4:50745099-50745118 | Msa1160690:three_prime_UTR | 30.0% | |
TCAAGTTTAGACCTATAGTT+AGG | - | chr7_4:50745158-50745177 | None:intergenic | 30.0% | |
AATTCAGTGGAGAAGAAATA+AGG | + | chr7_4:50744346-50744365 | Msa1160690:five_prime_UTR | 30.0% | |
TTTATGCGACTATTTAGAAG+AGG | - | chr7_4:50744425-50744444 | None:intergenic | 30.0% | |
TGTAGTCGATAAACAAAAGT+TGG | + | chr7_4:50744451-50744470 | Msa1160690:intron | 30.0% | |
GTTAATATTCTAGGTCTGTT+AGG | - | chr7_4:50744478-50744497 | None:intergenic | 30.0% | |
!! | AATGTTTTGTTATAGGTTGG+TGG | + | chr7_4:50744667-50744686 | Msa1160690:intron | 30.0% |
TCTTACCTTTATTGTGACAT+TGG | - | chr7_4:50744743-50744762 | None:intergenic | 30.0% | |
AGAAGAATTAAAATGCATGC+TGG | - | chr7_4:50744773-50744792 | None:intergenic | 30.0% | |
TTACAAAGTGGAAGAAACTT+TGG | + | chr7_4:50745003-50745022 | Msa1160690:CDS | 30.0% | |
! | AGCCTTTACATTCACATTTT+AGG | - | chr7_4:50745096-50745115 | None:intergenic | 30.0% |
ATGTGAATGTAAAGGCTTAA+AGG | + | chr7_4:50745099-50745118 | Msa1160690:three_prime_UTR | 30.0% | |
TCAAGTTTAGACCTATAGTT+AGG | - | chr7_4:50745158-50745177 | None:intergenic | 30.0% | |
TGAATTTCAACATGATCTCC+AGG | - | chr7_4:50744332-50744351 | None:intergenic | 35.0% | |
GAGATCATGTTGAAATTCAG+TGG | + | chr7_4:50744333-50744352 | Msa1160690:five_prime_UTR | 35.0% | |
! | GTATAGTGTCATTGGTCATT+TGG | + | chr7_4:50744689-50744708 | Msa1160690:five_prime_UTR | 35.0% |
CTTTATTGTGACATTGGCAA+TGG | - | chr7_4:50744737-50744756 | None:intergenic | 35.0% | |
CATTGCCAATGTCACAATAA+AGG | + | chr7_4:50744735-50744754 | Msa1160690:five_prime_UTR | 35.0% | |
AGAATTAAAATGCATGCTGG+TGG | - | chr7_4:50744770-50744789 | None:intergenic | 35.0% | |
AATCAGAAAGTTGCATAGCA+AGG | + | chr7_4:50744974-50744993 | Msa1160690:CDS | 35.0% | |
TGTCACTCATTCCTAACTAT+AGG | + | chr7_4:50745144-50745163 | Msa1160690:three_prime_UTR | 35.0% | |
GTACACTATTGCTTATGTAG+TGG | - | chr7_4:50745224-50745243 | None:intergenic | 35.0% | |
TGAATTTCAACATGATCTCC+AGG | - | chr7_4:50744332-50744351 | None:intergenic | 35.0% | |
GAGATCATGTTGAAATTCAG+TGG | + | chr7_4:50744333-50744352 | Msa1160690:five_prime_UTR | 35.0% | |
! | GTATAGTGTCATTGGTCATT+TGG | + | chr7_4:50744689-50744708 | Msa1160690:five_prime_UTR | 35.0% |
CTTTATTGTGACATTGGCAA+TGG | - | chr7_4:50744737-50744756 | None:intergenic | 35.0% | |
CATTGCCAATGTCACAATAA+AGG | + | chr7_4:50744735-50744754 | Msa1160690:five_prime_UTR | 35.0% | |
AGAATTAAAATGCATGCTGG+TGG | - | chr7_4:50744770-50744789 | None:intergenic | 35.0% | |
AATCAGAAAGTTGCATAGCA+AGG | + | chr7_4:50744974-50744993 | Msa1160690:CDS | 35.0% | |
TGTCACTCATTCCTAACTAT+AGG | + | chr7_4:50745144-50745163 | Msa1160690:three_prime_UTR | 35.0% | |
GTACACTATTGCTTATGTAG+TGG | - | chr7_4:50745224-50745243 | None:intergenic | 35.0% | |
TGCTTAGATGACTTAAAGCC+TGG | + | chr7_4:50744311-50744330 | Msa1160690:five_prime_UTR | 40.0% | |
GGTCATTTGGAAACATGTCA+AGG | + | chr7_4:50744702-50744721 | Msa1160690:five_prime_UTR | 40.0% | |
TTGGAAACATGTCAAGGTGA+TGG | + | chr7_4:50744708-50744727 | Msa1160690:five_prime_UTR | 40.0% | |
TGGAAACATGTCAAGGTGAT+GGG | + | chr7_4:50744709-50744728 | Msa1160690:five_prime_UTR | 40.0% | |
! | GGTGACAGATACAGTGATTT+TGG | + | chr7_4:50744851-50744870 | Msa1160690:intron | 40.0% |
GCAAGGAAGAGATTACAAAG+TGG | + | chr7_4:50744991-50745010 | Msa1160690:CDS | 40.0% | |
TGCTTAGATGACTTAAAGCC+TGG | + | chr7_4:50744311-50744330 | Msa1160690:five_prime_UTR | 40.0% | |
GGTCATTTGGAAACATGTCA+AGG | + | chr7_4:50744702-50744721 | Msa1160690:five_prime_UTR | 40.0% | |
TTGGAAACATGTCAAGGTGA+TGG | + | chr7_4:50744708-50744727 | Msa1160690:five_prime_UTR | 40.0% | |
TGGAAACATGTCAAGGTGAT+GGG | + | chr7_4:50744709-50744728 | Msa1160690:five_prime_UTR | 40.0% | |
! | GGTGACAGATACAGTGATTT+TGG | + | chr7_4:50744851-50744870 | Msa1160690:intron | 40.0% |
GCAAGGAAGAGATTACAAAG+TGG | + | chr7_4:50744991-50745010 | Msa1160690:CDS | 40.0% | |
!! | GGTTGGTGGTATAGTGTCAT+TGG | + | chr7_4:50744681-50744700 | Msa1160690:intron | 45.0% |
GAGTTCACACAATACACAGC+TGG | + | chr7_4:50744873-50744892 | Msa1160690:five_prime_UTR | 45.0% | |
! | AATACACAGCTGGCTCAAGA+TGG | + | chr7_4:50744883-50744902 | Msa1160690:five_prime_UTR | 45.0% |
!! | GGTTGGTGGTATAGTGTCAT+TGG | + | chr7_4:50744681-50744700 | Msa1160690:intron | 45.0% |
GAGTTCACACAATACACAGC+TGG | + | chr7_4:50744873-50744892 | Msa1160690:five_prime_UTR | 45.0% | |
! | AATACACAGCTGGCTCAAGA+TGG | + | chr7_4:50744883-50744902 | Msa1160690:five_prime_UTR | 45.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 50744293 | 50745354 | 50744293 | ID=Msa1160690;Name=Msa1160690 |
chr7_4 | mRNA | 50744293 | 50745354 | 50744293 | ID=Msa1160690-mRNA-1;Parent=Msa1160690;Name=Msa1160690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=219|1|1|1|0.5|0.66|3|308|43 |
chr7_4 | exon | 50744293 | 50744380 | 50744293 | ID=Msa1160690-mRNA-1:exon:14179;Parent=Msa1160690-mRNA-1 |
chr7_4 | exon | 50744682 | 50744756 | 50744682 | ID=Msa1160690-mRNA-1:exon:14180;Parent=Msa1160690-mRNA-1 |
chr7_4 | exon | 50744859 | 50745354 | 50744859 | ID=Msa1160690-mRNA-1:exon:14181;Parent=Msa1160690-mRNA-1 |
chr7_4 | five_prime_UTR | 50744293 | 50744380 | 50744293 | ID=Msa1160690-mRNA-1:five_prime_utr;Parent=Msa1160690-mRNA-1 |
chr7_4 | five_prime_UTR | 50744682 | 50744756 | 50744682 | ID=Msa1160690-mRNA-1:five_prime_utr;Parent=Msa1160690-mRNA-1 |
chr7_4 | five_prime_UTR | 50744859 | 50744914 | 50744859 | ID=Msa1160690-mRNA-1:five_prime_utr;Parent=Msa1160690-mRNA-1 |
chr7_4 | CDS | 50744915 | 50745046 | 50744915 | ID=Msa1160690-mRNA-1:cds;Parent=Msa1160690-mRNA-1 |
chr7_4 | three_prime_UTR | 50745047 | 50745354 | 50745047 | ID=Msa1160690-mRNA-1:three_prime_utr;Parent=Msa1160690-mRNA-1 |
Gene Sequence |
Protein sequence |