Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697060 | AES90577.2 | 76.596 | 470 | 36 | 4 | 1 | 397 | 1 | 469 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697060 | G7JV29 | 76.596 | 470 | 36 | 4 | 1 | 397 | 1 | 469 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0697060 | 0.804829 | 1.790224e-49 | -8.615850e-47 |
| Msa0007770 | Msa0697060 | 0.800792 | 1.220707e-48 | -8.615850e-47 |
| Msa0011170 | Msa0697060 | 0.807684 | 4.482131e-50 | -8.615850e-47 |
| Msa0012060 | Msa0697060 | 0.800011 | 1.760789e-48 | -8.615850e-47 |
| Msa0016570 | Msa0697060 | 0.815942 | 7.138665e-52 | -8.615850e-47 |
| Msa0017070 | Msa0697060 | 0.803109 | 4.077449e-49 | -8.615850e-47 |
| Msa0017510 | Msa0697060 | 0.827578 | 1.447919e-54 | -8.615850e-47 |
| Msa0056530 | Msa0697060 | 0.812520 | 4.067805e-51 | -8.615850e-47 |
| Msa0075900 | Msa0697060 | 0.804840 | 1.780407e-49 | -8.615850e-47 |
| Msa0084380 | Msa0697060 | 0.806379 | 8.463787e-50 | -8.615850e-47 |
| Msa0112750 | Msa0697060 | 0.834864 | 2.341556e-56 | -8.615850e-47 |
| Msa0117710 | Msa0697060 | 0.823466 | 1.364021e-53 | -8.615850e-47 |
| Msa0657970 | Msa0697060 | 0.835310 | 1.807359e-56 | -8.615850e-47 |
| Msa0661230 | Msa0697060 | 0.801973 | 6.991442e-49 | -8.615850e-47 |
| Msa0661650 | Msa0697060 | 0.801945 | 7.086352e-49 | -8.615850e-47 |
| Msa0661870 | Msa0697060 | 0.820681 | 6.031294e-53 | -8.615850e-47 |
| Msa0663240 | Msa0697060 | 0.809546 | 1.793951e-50 | -8.615850e-47 |
| Msa0678930 | Msa0697060 | 0.823548 | 1.305780e-53 | -8.615850e-47 |
| Msa0688270 | Msa0697060 | 0.810919 | 9.070287e-51 | -8.615850e-47 |
| Msa0694370 | Msa0697060 | 0.811948 | 5.422548e-51 | -8.615850e-47 |
| Msa0696640 | Msa0697060 | 0.805666 | 1.195900e-49 | -8.615850e-47 |
| Msa0697030 | Msa0697060 | 0.800441 | 1.439322e-48 | -8.615850e-47 |
| Msa0697060 | Msa0726140 | 0.819363 | 1.208205e-52 | -8.615850e-47 |
| Msa0697060 | Msa0731940 | 0.827850 | 1.245435e-54 | -8.615850e-47 |
| Msa0697060 | Msa0735170 | 0.811819 | 5.784529e-51 | -8.615850e-47 |
| Msa0697060 | Msa0736000 | 0.810656 | 1.034066e-50 | -8.615850e-47 |
| Msa0697060 | Msa0741570 | 0.824876 | 6.364933e-54 | -8.615850e-47 |
| Msa0697060 | Msa0745060 | 0.805477 | 1.309766e-49 | -8.615850e-47 |
| Msa0697060 | Msa0759410 | 0.839908 | 1.195502e-57 | -8.615850e-47 |
| Msa0697060 | Msa0766630 | 0.872240 | 3.702134e-67 | -8.615850e-47 |
| Msa0697060 | Msa0767720 | 0.822106 | 2.828451e-53 | -8.615850e-47 |
| Msa0697060 | Msa0777790 | 0.829484 | 5.017694e-55 | -8.615850e-47 |
| Msa0697060 | Msa0777850 | 0.803539 | 3.322203e-49 | -8.615850e-47 |
| Msa0697060 | Msa0777930 | 0.813304 | 2.739337e-51 | -8.615850e-47 |
| Msa0697060 | Msa0789250 | 0.814797 | 1.282740e-51 | -8.615850e-47 |
| Msa0697060 | Msa0802830 | 0.810080 | 1.376898e-50 | -8.615850e-47 |
| Msa0697060 | Msa0806090 | 0.817921 | 2.565773e-52 | -8.615850e-47 |
| Msa0697060 | Msa0810220 | 0.821084 | 4.871321e-53 | -8.615850e-47 |
| Msa0697060 | Msa0811080 | 0.826689 | 2.363432e-54 | -8.615850e-47 |
| Msa0697060 | Msa0813400 | 0.805096 | 1.574036e-49 | -8.615850e-47 |
| Msa0697060 | Msa0820850 | 0.803221 | 3.866625e-49 | -8.615850e-47 |
| Msa0697060 | Msa0822650 | 0.815292 | 9.963470e-52 | -8.615850e-47 |
| Msa0697060 | Msa0825860 | 0.804598 | 2.000508e-49 | -8.615850e-47 |
| Msa0697060 | Msa0828850 | 0.806412 | 8.331678e-50 | -8.615850e-47 |
| Msa0697060 | Msa0833290 | 0.800594 | 1.339611e-48 | -8.615850e-47 |
| Msa0697060 | Msa0840820 | 0.800679 | 1.287198e-48 | -8.615850e-47 |
| Msa0697060 | Msa0846350 | 0.819125 | 1.368290e-52 | -8.615850e-47 |
| Msa0697060 | Msa0861130 | 0.811202 | 7.877749e-51 | -8.615850e-47 |
| Msa0697060 | Msa0870530 | 0.810068 | 1.385365e-50 | -8.615850e-47 |
| Msa0697060 | Msa0871270 | 0.803339 | 3.653939e-49 | -8.615850e-47 |
| Msa0697060 | Msa0874320 | 0.804905 | 1.725872e-49 | -8.615850e-47 |
| Msa0697060 | Msa0880140 | 0.824395 | 8.259938e-54 | -8.615850e-47 |
| Msa0697060 | Msa0885280 | 0.843741 | 1.162553e-58 | -8.615850e-47 |
| Msa0697060 | Msa0885290 | 0.825148 | 5.489902e-54 | -8.615850e-47 |
| Msa0697060 | Msa0887020 | 0.819129 | 1.365861e-52 | -8.615850e-47 |
| Msa0697060 | Msa0887990 | 0.810221 | 1.284074e-50 | -8.615850e-47 |
| Msa0697060 | Msa0898380 | 0.806157 | 9.426177e-50 | -8.615850e-47 |
| Msa0697060 | Msa0907070 | 0.824486 | 7.865727e-54 | -8.615850e-47 |
| Msa0697060 | Msa0907260 | 0.824185 | 9.257480e-54 | -8.615850e-47 |
| Msa0697060 | Msa0922720 | 0.819425 | 1.169328e-52 | -8.615850e-47 |
| Msa0697060 | Msa0925290 | 0.808788 | 2.607595e-50 | -8.615850e-47 |
| Msa0697060 | Msa0927290 | 0.807373 | 5.218658e-50 | -8.615850e-47 |
| Msa0697060 | Msa0935910 | 0.822886 | 1.863254e-53 | -8.615850e-47 |
| Msa0697060 | Msa0936210 | 0.803547 | 3.308920e-49 | -8.615850e-47 |
| Msa0697060 | Msa0938220 | 0.811966 | 5.374551e-51 | -8.615850e-47 |
| Msa0697060 | Msa0954130 | 0.810649 | 1.037699e-50 | -8.615850e-47 |
| Msa0697060 | Msa0954550 | 0.806800 | 6.900283e-50 | -8.615850e-47 |
| Msa0697060 | Msa0954910 | 0.801408 | 9.131285e-49 | -8.615850e-47 |
| Msa0697060 | Msa0956270 | 0.818848 | 1.582547e-52 | -8.615850e-47 |
| Msa0697060 | Msa0961090 | 0.806426 | 8.275343e-50 | -8.615850e-47 |
| Msa0697060 | Msa0975220 | 0.801741 | 7.804163e-49 | -8.615850e-47 |
| Msa0697060 | Msa0981370 | 0.828574 | 8.335646e-55 | -8.615850e-47 |
| Msa0697060 | Msa0983090 | 0.807072 | 6.043682e-50 | -8.615850e-47 |
| Msa0697060 | Msa0990350 | 0.805039 | 1.617947e-49 | -8.615850e-47 |
| Msa0697060 | Msa0998690 | 0.824135 | 9.509830e-54 | -8.615850e-47 |
| Msa0697060 | Msa1014540 | 0.827227 | 1.757966e-54 | -8.615850e-47 |
| Msa0697060 | Msa1016280 | 0.815260 | 1.012869e-51 | -8.615850e-47 |
| Msa0697060 | Msa1023950 | 0.804432 | 2.166858e-49 | -8.615850e-47 |
| Msa0697060 | Msa1024240 | 0.845401 | 4.155081e-59 | -8.615850e-47 |
| Msa0697060 | Msa1065570 | 0.807946 | 3.942217e-50 | -8.615850e-47 |
| Msa0697060 | Msa1075220 | -0.807935 | 3.964758e-50 | -8.615850e-47 |
| Msa0697060 | Msa1075540 | 0.801562 | 8.493442e-49 | -8.615850e-47 |
| Msa0697060 | Msa1075650 | 0.805048 | 1.611033e-49 | -8.615850e-47 |
| Msa0697060 | Msa1079180 | 0.829000 | 6.574892e-55 | -8.615850e-47 |
| Msa0697060 | Msa1081590 | 0.815593 | 8.540468e-52 | -8.615850e-47 |
| Msa0697060 | Msa1082500 | 0.834062 | 3.724926e-56 | -8.615850e-47 |
| Msa0697060 | Msa1092990 | 0.800042 | 1.735408e-48 | -8.615850e-47 |
| Msa0697060 | Msa1100980 | 0.817026 | 4.082120e-52 | -8.615850e-47 |
| Msa0697060 | Msa1109440 | 0.811969 | 5.367202e-51 | -8.615850e-47 |
| Msa0697060 | Msa1111150 | 0.806938 | 6.449812e-50 | -8.615850e-47 |
| Msa0697060 | Msa1114030 | 0.809894 | 1.510260e-50 | -8.615850e-47 |
| Msa0697060 | Msa1116260 | 0.805884 | 1.075811e-49 | -8.615850e-47 |
| Msa0697060 | Msa1121490 | 0.800161 | 1.641228e-48 | -8.615850e-47 |
| Msa0697060 | Msa1122040 | 0.808296 | 3.321224e-50 | -8.615850e-47 |
| Msa0697060 | Msa1135740 | 0.805984 | 1.025314e-49 | -8.615850e-47 |
| Msa0697060 | Msa1136090 | 0.833576 | 4.926125e-56 | -8.615850e-47 |
| Msa0697060 | Msa1137690 | 0.815435 | 9.257915e-52 | -8.615850e-47 |
| Msa0697060 | Msa1160670 | 0.855335 | 6.758526e-62 | -8.615850e-47 |
| Msa0697060 | Msa1160690 | 0.814402 | 1.568739e-51 | -8.615850e-47 |
| Msa0697060 | Msa1162550 | -0.810865 | 9.321642e-51 | -8.615850e-47 |
| Msa0697060 | Msa1163820 | 0.820658 | 6.107306e-53 | -8.615850e-47 |
| Msa0697060 | Msa1167220 | 0.802656 | 5.059521e-49 | -8.615850e-47 |
| Msa0697060 | Msa1172670 | 0.806911 | 6.534529e-50 | -8.615850e-47 |
| Msa0697060 | Msa1186060 | 0.817443 | 3.288380e-52 | -8.615850e-47 |
| Msa0697060 | Msa1187940 | 0.814331 | 1.626491e-51 | -8.615850e-47 |
| Msa0697060 | Msa1187950 | 0.832209 | 1.077342e-55 | -8.615850e-47 |
| Msa0697060 | Msa1192640 | 0.800694 | 1.278313e-48 | -8.615850e-47 |
| Msa0697060 | Msa1193290 | 0.801067 | 1.072636e-48 | -8.615850e-47 |
| Msa0697060 | Msa1228590 | 0.804949 | 1.690001e-49 | -8.615850e-47 |
| Msa0697060 | Msa1246510 | 0.800361 | 1.494396e-48 | -8.615850e-47 |
| Msa0697060 | Msa1253000 | 0.809017 | 2.329126e-50 | -8.615850e-47 |
| Msa0697060 | Msa1269670 | 0.810418 | 1.164115e-50 | -8.615850e-47 |
| Msa0697060 | Msa1283330 | 0.801751 | 7.768233e-49 | -8.615850e-47 |
| Msa0697060 | Msa1284680 | 0.850408 | 1.731820e-60 | -8.615850e-47 |
| Msa0697060 | Msa1297210 | 0.813121 | 3.003902e-51 | -8.615850e-47 |
| Msa0697060 | Msa1298260 | 0.831010 | 2.126722e-55 | -8.615850e-47 |
| Msa0697060 | Msa1307890 | 0.807349 | 5.279838e-50 | -8.615850e-47 |
| Msa0697060 | Msa1313140 | 0.800764 | 1.236906e-48 | -8.615850e-47 |
| Msa0697060 | Msa1353470 | 0.818128 | 2.304179e-52 | -8.615850e-47 |
| Msa0697060 | Msa1372760 | 0.800279 | 1.552428e-48 | -8.615850e-47 |
| Msa0697060 | Msa1372980 | 0.828864 | 7.092685e-55 | -8.615850e-47 |
| Msa0697060 | Msa1373010 | 0.807204 | 5.666904e-50 | -8.615850e-47 |
| Msa0697060 | Msa1373030 | 0.822114 | 2.816420e-53 | -8.615850e-47 |
| Msa0697060 | Msa1392260 | 0.820029 | 8.511678e-53 | -8.615850e-47 |
| Msa0697060 | Msa1397610 | 0.840064 | 1.088545e-57 | -8.615850e-47 |
| Msa0697060 | Msa1397860 | 0.829118 | 6.155824e-55 | -8.615850e-47 |
| Msa0697060 | Msa1403480 | 0.801047 | 1.082560e-48 | -8.615850e-47 |
| Msa0697060 | Msa1411020 | 0.829257 | 5.695364e-55 | -8.615850e-47 |
| Msa0697060 | Msa1420140 | 0.815503 | 8.941422e-52 | -8.615850e-47 |
| Msa0697060 | Msa1420490 | 0.819544 | 1.098298e-52 | -8.615850e-47 |
| Msa0697060 | Msa1422180 | 0.804022 | 2.636268e-49 | -8.615850e-47 |
| Msa0697060 | Msa1423390 | 0.815801 | 7.676107e-52 | -8.615850e-47 |
| Msa0697060 | Msa1424290 | 0.827760 | 1.309263e-54 | -8.615850e-47 |
| Msa0697060 | Msa1425100 | 0.808137 | 3.589561e-50 | -8.615850e-47 |
| Msa0697060 | Msa1429900 | 0.810637 | 1.043882e-50 | -8.615850e-47 |
| Msa0697060 | Msa1433120 | 0.811557 | 6.597496e-51 | -8.615850e-47 |
| Msa0697060 | Msa1434350 | 0.825453 | 4.648293e-54 | -8.615850e-47 |
| Msa0697060 | Msa1438250 | 0.839496 | 1.530943e-57 | -8.615850e-47 |
| Msa0697060 | Msa1439320 | 0.825176 | 5.407225e-54 | -8.615850e-47 |
| Msa0697060 | Msa1440370 | 0.819569 | 1.084254e-52 | -8.615850e-47 |
| Msa0697060 | Msa1440810 | 0.816859 | 4.449349e-52 | -8.615850e-47 |
| Msa0697060 | Msa1451620 | -0.803582 | 3.253846e-49 | -8.615850e-47 |
| Msa0697060 | Msa1463670 | 0.801042 | 1.085070e-48 | -8.615850e-47 |
| Msa0697060 | Msa1466540 | 0.824998 | 5.955134e-54 | -8.615850e-47 |
| Msa0697060 | Msa1467020 | 0.802533 | 5.361891e-49 | -8.615850e-47 |
| Msa0142220 | Msa0697060 | 0.855468 | 6.182198e-62 | -8.615850e-47 |
| Msa0153910 | Msa0697060 | 0.820550 | 6.466457e-53 | -8.615850e-47 |
| Msa0157290 | Msa0697060 | 0.826156 | 3.165586e-54 | -8.615850e-47 |
| Msa0188460 | Msa0697060 | 0.826443 | 2.704731e-54 | -8.615850e-47 |
| Msa0188830 | Msa0697060 | 0.819347 | 1.218192e-52 | -8.615850e-47 |
| Msa0199240 | Msa0697060 | 0.806013 | 1.011022e-49 | -8.615850e-47 |
| Msa0201070 | Msa0697060 | 0.814942 | 1.191562e-51 | -8.615850e-47 |
| Msa0201250 | Msa0697060 | 0.805072 | 1.592733e-49 | -8.615850e-47 |
| Msa0205510 | Msa0697060 | 0.806100 | 9.689353e-50 | -8.615850e-47 |
| Msa0208090 | Msa0697060 | 0.815798 | 7.686633e-52 | -8.615850e-47 |
| Msa0220740 | Msa0697060 | 0.800559 | 1.361860e-48 | -8.615850e-47 |
| Msa0222890 | Msa0697060 | 0.800596 | 1.338258e-48 | -8.615850e-47 |
| Msa0227480 | Msa0697060 | 0.817739 | 2.821085e-52 | -8.615850e-47 |
| Msa0231000 | Msa0697060 | 0.825467 | 4.614306e-54 | -8.615850e-47 |
| Msa0233080 | Msa0697060 | 0.802834 | 4.647701e-49 | -8.615850e-47 |
| Msa0233300 | Msa0697060 | 0.821364 | 4.198709e-53 | -8.615850e-47 |
| Msa0235140 | Msa0697060 | 0.820905 | 5.358260e-53 | -8.615850e-47 |
| Msa0384800 | Msa0697060 | 0.809121 | 2.212451e-50 | -8.615850e-47 |
| Msa0384890 | Msa0697060 | 0.800825 | 1.201954e-48 | -8.615850e-47 |
| Msa0390070 | Msa0697060 | 0.824695 | 7.021315e-54 | -8.615850e-47 |
| Msa0402290 | Msa0697060 | 0.838684 | 2.484304e-57 | -8.615850e-47 |
| Msa0406120 | Msa0697060 | 0.802281 | 6.044179e-49 | -8.615850e-47 |
| Msa0407750 | Msa0697060 | 0.804791 | 1.823438e-49 | -8.615850e-47 |
| Msa0408110 | Msa0697060 | 0.801009 | 1.102176e-48 | -8.615850e-47 |
| Msa0414410 | Msa0697060 | 0.801049 | 1.081520e-48 | -8.615850e-47 |
| Msa0419980 | Msa0697060 | 0.803138 | 4.022495e-49 | -8.615850e-47 |
| Msa0429880 | Msa0697060 | 0.809093 | 2.243731e-50 | -8.615850e-47 |
| Msa0431690 | Msa0697060 | 0.807026 | 6.179899e-50 | -8.615850e-47 |
| Msa0432300 | Msa0697060 | 0.806990 | 6.290330e-50 | -8.615850e-47 |
| Msa0435230 | Msa0697060 | 0.822549 | 2.232199e-53 | -8.615850e-47 |
| Msa0436800 | Msa0697060 | 0.826151 | 3.174411e-54 | -8.615850e-47 |
| Msa0437990 | Msa0697060 | 0.836439 | 9.351257e-57 | -8.615850e-47 |
| Msa0443260 | Msa0697060 | 0.805652 | 1.203733e-49 | -8.615850e-47 |
| Msa0452620 | Msa0697060 | 0.817850 | 2.662286e-52 | -8.615850e-47 |
| Msa0479340 | Msa0697060 | 0.812362 | 4.405757e-51 | -8.615850e-47 |
| Msa0243710 | Msa0697060 | 0.804493 | 2.104084e-49 | -8.615850e-47 |
| Msa0243890 | Msa0697060 | 0.808233 | 3.424869e-50 | -8.615850e-47 |
| Msa0251320 | Msa0697060 | 0.802504 | 5.437331e-49 | -8.615850e-47 |
| Msa0257460 | Msa0697060 | 0.811811 | 5.809461e-51 | -8.615850e-47 |
| Msa0270520 | Msa0697060 | 0.821287 | 4.375780e-53 | -8.615850e-47 |
| Msa0285450 | Msa0697060 | 0.809233 | 2.093969e-50 | -8.615850e-47 |
| Msa0288100 | Msa0697060 | 0.806071 | 9.830107e-50 | -8.615850e-47 |
| Msa0295770 | Msa0697060 | 0.806397 | 8.389238e-50 | -8.615850e-47 |
| Msa0309020 | Msa0697060 | 0.836176 | 1.090993e-56 | -8.615850e-47 |
| Msa0313760 | Msa0697060 | 0.803450 | 3.466210e-49 | -8.615850e-47 |
| Msa0321310 | Msa0697060 | 0.804299 | 2.308830e-49 | -8.615850e-47 |
| Msa0326200 | Msa0697060 | 0.817443 | 3.289170e-52 | -8.615850e-47 |
| Msa0337900 | Msa0697060 | 0.804486 | 2.111001e-49 | -8.615850e-47 |
| Msa0340470 | Msa0697060 | 0.804292 | 2.316728e-49 | -8.615850e-47 |
| Msa0353190 | Msa0697060 | 0.811030 | 8.582164e-51 | -8.615850e-47 |
| Msa0355220 | Msa0697060 | 0.830963 | 2.183817e-55 | -8.615850e-47 |
| Msa0361780 | Msa0697060 | 0.803515 | 3.360019e-49 | -8.615850e-47 |
| Msa0363300 | Msa0697060 | 0.802949 | 4.401114e-49 | -8.615850e-47 |
| Msa0363360 | Msa0697060 | 0.813219 | 2.859557e-51 | -8.615850e-47 |
| Msa0484780 | Msa0697060 | 0.827280 | 1.707022e-54 | -8.615850e-47 |
| Msa0502270 | Msa0697060 | 0.844137 | 9.107241e-59 | -8.615850e-47 |
| Msa0502890 | Msa0697060 | 0.805199 | 1.498211e-49 | -8.615850e-47 |
| Msa0512890 | Msa0697060 | 0.807685 | 4.479605e-50 | -8.615850e-47 |
| Msa0512900 | Msa0697060 | 0.818531 | 1.867063e-52 | -8.615850e-47 |
| Msa0532350 | Msa0697060 | 0.833088 | 6.518508e-56 | -8.615850e-47 |
| Msa0541130 | Msa0697060 | 0.804283 | 2.326809e-49 | -8.615850e-47 |
| Msa0558640 | Msa0697060 | 0.803698 | 3.078542e-49 | -8.615850e-47 |
| Msa0564390 | Msa0697060 | 0.826956 | 2.040869e-54 | -8.615850e-47 |
| Msa0598780 | Msa0697060 | 0.832914 | 7.200414e-56 | -8.615850e-47 |
| Msa0600700 | Msa0697060 | 0.809131 | 2.201876e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697060 | MtrunA17_Chr4g0049681 | 92.193 | 269 | 19 | 2 | 130 | 397 | 3 | 270 | 0.0 | 504 |
| Msa0697060 | MtrunA17_Chr4g0049681 | 62.712 | 118 | 42 | 1 | 101 | 218 | 112 | 227 | 6.57e-38 | 137 |
| Msa0697060 | MtrunA17_Chr4g0049651 | 49.614 | 518 | 138 | 7 | 1 | 396 | 1 | 517 | 9.97e-151 | 436 |
| Msa0697060 | MtrunA17_Chr4g0049671 | 50.122 | 411 | 110 | 9 | 1 | 345 | 1 | 382 | 5.39e-116 | 352 |
| Msa0697060 | MtrunA17_Chr4g0049671 | 57.480 | 254 | 87 | 8 | 101 | 348 | 275 | 513 | 5.75e-73 | 239 |
| Msa0697060 | MtrunA17_Chr4g0049671 | 50.000 | 124 | 58 | 3 | 100 | 221 | 400 | 521 | 1.72e-24 | 105 |
| Msa0697060 | MtrunA17_Chr4g0049701 | 51.528 | 229 | 86 | 3 | 1 | 206 | 48 | 274 | 4.91e-73 | 231 |
| Msa0697060 | MtrunA17_Chr4g0049701 | 61.111 | 180 | 59 | 5 | 221 | 397 | 153 | 324 | 1.13e-57 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 107 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCTGTCATTCCTGAAAT+TGG | 0.144406 | 4_4:-67039472 | Msa0697060:CDS |
| ACAGACTTTACATATTATTT+TGG | 0.191954 | 4_4:+67038483 | None:intergenic |
| GAGAGATATATTTCAGAAAA+TGG | 0.226331 | 4_4:-67040089 | Msa0697060:CDS |
| TTGAAAGTTGAAAAGAAAAT+TGG | 0.240348 | 4_4:-67038341 | Msa0697060:three_prime_UTR |
| GACTTGAGTTCCCACCTTAC+TGG | 0.284009 | 4_4:-67039295 | Msa0697060:CDS |
| TTGGAATTAATCATCCTAAT+AGG | 0.284694 | 4_4:+67038502 | None:intergenic |
| TAACATTGCTGATTCTAAAA+TGG | 0.284825 | 4_4:-67038281 | Msa0697060:three_prime_UTR |
| GTGGTGAGTGGAAATTAAAA+TGG | 0.298848 | 4_4:+67041369 | None:intergenic |
| ATTACTTCTTCCTCTTTATC+TGG | 0.303749 | 4_4:-67041283 | Msa0697060:five_prime_UTR |
| TACGTGGCCTCTCACATAAA+AGG | 0.311728 | 4_4:-67038436 | Msa0697060:CDS |
| AGTTCCTTTGGTTTCTATTA+CGG | 0.314694 | 4_4:+67038732 | None:intergenic |
| TGTATGAAGCCTTACTTTCT+CGG | 0.320172 | 4_4:+67038952 | None:intergenic |
| GAACAAAGACATCAGAGATT+TGG | 0.327909 | 4_4:-67039819 | Msa0697060:CDS |
| AGAACCTATCAGAACCTATT+AGG | 0.329675 | 4_4:-67038516 | Msa0697060:CDS |
| AGCCTTACTTGCTTGGTTCC+AGG | 0.332264 | 4_4:+67039773 | None:intergenic |
| GTTGGCAATGACTTTCTCTA+AGG | 0.334076 | 4_4:+67040058 | None:intergenic |
| GAACAAAGACATCAAAGATT+TGG | 0.334821 | 4_4:-67039005 | Msa0697060:CDS |
| AGCTTGAATTCAAACTGATA+TGG | 0.343988 | 4_4:-67041222 | Msa0697060:intron |
| AAATCTTGTAATTACCTTGT+TGG | 0.348314 | 4_4:+67040040 | None:intergenic |
| GACACTTTCAGCAGTTCCTT+TGG | 0.352458 | 4_4:+67038720 | None:intergenic |
| TTAAGTCAAATTCTAATTAG+TGG | 0.367151 | 4_4:+67041350 | None:intergenic |
| CCCTGTGTCTCCTTCCCCTC+AGG | 0.376332 | 4_4:+67038584 | None:intergenic |
| CCCTGTGTTTCCTCCCAGTA+AGG | 0.382933 | 4_4:+67039281 | None:intergenic |
| AAGGAGACACAGGGAAACTA+TGG | 0.387321 | 4_4:-67038575 | Msa0697060:CDS |
| CTTCTTCCTCTTTATCTGGC+AGG | 0.395547 | 4_4:-67041279 | Msa0697060:intron |
| TTTCTTCTTGTGCAGACAAA+TGG | 0.406488 | 4_4:-67039046 | Msa0697060:intron |
| TTTGGAGGCTATTGAGAAGA+AGG | 0.409947 | 4_4:-67038987 | Msa0697060:CDS |
| TCATCCTAATAGGTTCTGAT+AGG | 0.414047 | 4_4:+67038512 | None:intergenic |
| TCCCCTCAGGTGAGAAATCA+AGG | 0.422843 | 4_4:+67038597 | None:intergenic |
| TTCCTGTCATTCCTGAAATT+GGG | 0.423246 | 4_4:-67039471 | Msa0697060:CDS |
| AGCCTTACTTTCTCGGTTGA+AGG | 0.427355 | 4_4:+67038959 | None:intergenic |
| CTTGAGATAACCATGTTTGA+GGG | 0.427553 | 4_4:-67038376 | Msa0697060:three_prime_UTR |
| TCCATATCAGGTTTCACCTC+TGG | 0.429049 | 4_4:-67040283 | Msa0697060:intron |
| CTGGCTGTACATTAAGCTAA+TGG | 0.447550 | 4_4:-67040264 | Msa0697060:CDS |
| TGAATGAAGCCTTACTTGCT+TGG | 0.449041 | 4_4:+67039766 | None:intergenic |
| TGTGACGATGTGGGGTTTCA+TGG | 0.450530 | 4_4:+67040175 | None:intergenic |
| CTTTATGTTTGGTAACGGTT+AGG | 0.455051 | 4_4:-67038630 | Msa0697060:CDS |
| GTGGACTTGTGCTTTATGTT+TGG | 0.455948 | 4_4:-67039338 | Msa0697060:CDS |
| TAAAGAGGAAGAAGTAATAG+TGG | 0.458108 | 4_4:+67041288 | None:intergenic |
| GTGGACTTGTGCTTTATGTT+TGG | 0.459600 | 4_4:-67038641 | Msa0697060:CDS |
| TAAGAAGCTCGTTCAAAGTC+CGG | 0.476214 | 4_4:+67040221 | None:intergenic |
| CACAGAAGGAAATGCAGAAA+AGG | 0.476546 | 4_4:-67039360 | Msa0697060:CDS |
| CCGAGACCTGCCAGATAAAG+AGG | 0.483755 | 4_4:+67041273 | None:intergenic |
| ACTTGAGATAACCATGTTTG+AGG | 0.484780 | 4_4:-67038377 | Msa0697060:three_prime_UTR |
| ACTTGAGTTCCCACCTTACT+GGG | 0.490152 | 4_4:-67039294 | Msa0697060:CDS |
| ACCTTACTGGGAGGAAACAC+AGG | 0.497797 | 4_4:-67039282 | Msa0697060:CDS |
| GCTGAAAGTGTCACAGCTTG+TGG | 0.498708 | 4_4:-67038709 | Msa0697060:CDS |
| TGGTGAGTGGAAATTAAAAT+GGG | 0.501225 | 4_4:+67041370 | None:intergenic |
| GGCCCAATTTCAGGAATGAC+AGG | 0.501371 | 4_4:+67039469 | None:intergenic |
| ACCTGAGGGGAAGGAGACAC+AGG | 0.501607 | 4_4:-67038585 | Msa0697060:CDS |
| CATGGAGGTTAAATGACTAC+TGG | 0.509030 | 4_4:-67040154 | Msa0697060:CDS |
| TTGTGCTTTATGTTTGGTAA+CGG | 0.515135 | 4_4:-67038635 | Msa0697060:CDS |
| TAGTAAGTGACATGTGTGAT+TGG | 0.516774 | 4_4:+67038206 | None:intergenic |
| CCTAGAGAAGCAAAAGGATG+TGG | 0.517116 | 4_4:-67039221 | Msa0697060:CDS |
| TGATTTCTCACCTGAGGGGA+AGG | 0.518963 | 4_4:-67038594 | Msa0697060:CDS |
| TGTGTTTCCTCCCAGTAAGG+TGG | 0.520632 | 4_4:+67039284 | None:intergenic |
| AACCTTGATTTCTCACCTGA+GGG | 0.523423 | 4_4:-67038599 | Msa0697060:CDS |
| AGCTGGTGGAGAGTTTCCAC+AGG | 0.525285 | 4_4:-67039389 | Msa0697060:CDS |
| CATACCATGCAAAATGATGA+AGG | 0.525631 | 4_4:+67041165 | None:intergenic |
| CAAAGACATCAAAGATTTGG+AGG | 0.526138 | 4_4:-67039002 | Msa0697060:CDS |
| ACGTGGCCTCTCACATAAAA+GGG | 0.540766 | 4_4:-67038435 | Msa0697060:CDS |
| CATCTTCTGCCTCATCATAC+CGG | 0.545247 | 4_4:-67040240 | Msa0697060:CDS |
| ACTTGCCACAATATTAGCAT+AGG | 0.549888 | 4_4:+67038771 | None:intergenic |
| GTGTTTCCTCCCAGTAAGGT+GGG | 0.552968 | 4_4:+67039285 | None:intergenic |
| ACAGCTATTATCAGTGGAGA+AGG | 0.566741 | 4_4:+67038308 | None:intergenic |
| ACCTACCCTAGAGAAGCAAA+AGG | 0.570301 | 4_4:-67039227 | Msa0697060:CDS |
| AACCTCCATGTGACGATGTG+GGG | 0.570336 | 4_4:+67040167 | None:intergenic |
| GCAGAGAATGACAGAGCTGG+TGG | 0.571170 | 4_4:-67039403 | Msa0697060:CDS |
| TCCTCAGAGTTCTACACAGA+CGG | 0.574741 | 4_4:-67038677 | Msa0697060:CDS |
| TAATATTATGCTTCCAAGTG+AGG | 0.575886 | 4_4:-67038461 | Msa0697060:CDS |
| TGATAATAAAGAAATACTAA+AGG | 0.577527 | 4_4:-67039173 | Msa0697060:intron |
| TCCACAGGGTTGTACACAGA+AGG | 0.578063 | 4_4:-67039374 | Msa0697060:CDS |
| TCAGCCACAGTGGAAACTAA+AGG | 0.582324 | 4_4:-67039430 | Msa0697060:CDS |
| GAGGCCACGTAGTCCTCACT+TGG | 0.584298 | 4_4:+67038448 | None:intergenic |
| TAACCTCCATGTGACGATGT+GGG | 0.588002 | 4_4:+67040166 | None:intergenic |
| GAGAACCTATGCTAATATTG+TGG | 0.589138 | 4_4:-67038776 | Msa0697060:CDS |
| AGACGGCAGTGCAGAAAGAG+TGG | 0.591412 | 4_4:-67038660 | Msa0697060:CDS |
| AGATAACCATGTTTGAGGGA+GGG | 0.595283 | 4_4:-67038372 | Msa0697060:three_prime_UTR |
| GAGAAGCAAAAGGATGTGGA+AGG | 0.595431 | 4_4:-67039217 | Msa0697060:CDS |
| ACAGCAGAGAATGACAGAGC+TGG | 0.596779 | 4_4:-67039406 | Msa0697060:CDS |
| AAACCTTGATTTCTCACCTG+AGG | 0.597116 | 4_4:-67038600 | Msa0697060:CDS |
| TGTCACAGCTTGTGGAGAGG+AGG | 0.601283 | 4_4:-67038701 | Msa0697060:CDS |
| AAATGTCCCTCCCTCAAACA+TGG | 0.602757 | 4_4:+67038366 | None:intergenic |
| AGAAGGAAATGCAGAAAAGG+TGG | 0.606490 | 4_4:-67039357 | Msa0697060:CDS |
| TTAACCTCCATGTGACGATG+TGG | 0.606838 | 4_4:+67040165 | None:intergenic |
| AAATTCTAATTAGTGGTGAG+TGG | 0.612603 | 4_4:+67041357 | None:intergenic |
| AGAGAAAGTCATTGCCAACA+AGG | 0.613966 | 4_4:-67040054 | Msa0697060:intron |
| GAGATAACCATGTTTGAGGG+AGG | 0.613988 | 4_4:-67038373 | Msa0697060:three_prime_UTR |
| TGAAACCCCACATCGTCACA+TGG | 0.625636 | 4_4:-67040172 | Msa0697060:CDS |
| GTTCAAAGTCCGGTATGATG+AGG | 0.637874 | 4_4:+67040231 | None:intergenic |
| TATGGTACAGCTATTATCAG+TGG | 0.639317 | 4_4:+67038302 | None:intergenic |
| CCTGAGGGGAAGGAGACACA+GGG | 0.646428 | 4_4:-67038584 | Msa0697060:CDS |
| TCCTTCTGTGTACAACCCTG+TGG | 0.657545 | 4_4:+67039373 | None:intergenic |
| AAATGCATCATCAGCCACAG+TGG | 0.664078 | 4_4:-67039440 | Msa0697060:CDS |
| AAGTGTCACAGCTTGTGGAG+AGG | 0.670743 | 4_4:-67038704 | Msa0697060:CDS |
| AGAAGCAAAAGGATGTGGAA+GGG | 0.674625 | 4_4:-67039216 | Msa0697060:CDS |
| ACCTTGATTTCTCACCTGAG+GGG | 0.676777 | 4_4:-67038598 | Msa0697060:CDS |
| GCTTCCAAGTGAGGACTACG+TGG | 0.677404 | 4_4:-67038452 | Msa0697060:CDS |
| TGGCCTCTCACATAAAAGGG+TGG | 0.683408 | 4_4:-67038432 | Msa0697060:CDS |
| CCTTACTGGGAGGAAACACA+GGG | 0.684955 | 4_4:-67039281 | Msa0697060:CDS |
| TCAGCCGTAATAGAAACCAA+AGG | 0.687722 | 4_4:-67038736 | Msa0697060:CDS |
| TTAGCTTAATGTACAGCCAG+AGG | 0.701171 | 4_4:+67040267 | None:intergenic |
| GCTGGTGGAGAGTTTCCACA+GGG | 0.711955 | 4_4:-67039388 | Msa0697060:CDS |
| TGAGTTCCCACCTTACTGGG+AGG | 0.712408 | 4_4:-67039291 | Msa0697060:CDS |
| TGTTCCTTTAGTTTCCACTG+TGG | 0.729490 | 4_4:+67039426 | None:intergenic |
| AACCCCACATCGTCACATGG+AGG | 0.742010 | 4_4:-67040169 | Msa0697060:CDS |
| GCCGTCTGTGTAGAACTCTG+AGG | 0.745253 | 4_4:+67038676 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAAAATAATAATGTAAA+AGG | + | chr4_4:67038579-67038598 | None:intergenic | 10.0% |
| !! | ATCATATAAAAAAAAAAAAG+AGG | + | chr4_4:67038608-67038627 | None:intergenic | 10.0% |
| !!! | AAACTTTAGAAGAATTATAA+AGG | - | chr4_4:67039495-67039514 | Msa0697060:intron | 15.0% |
| !!! | AACTTTAGAAGAATTATAAA+GGG | - | chr4_4:67039496-67039515 | Msa0697060:intron | 15.0% |
| !! | TGATAATAAAGAAATACTAA+AGG | - | chr4_4:67040315-67040334 | Msa0697060:intron | 15.0% |
| !!! | TAGTATATATATGAATTTTG+TGG | - | chr4_4:67040650-67040669 | Msa0697060:intron | 15.0% |
| !! | TTAAGTCAAATTCTAATTAG+TGG | + | chr4_4:67038141-67038160 | None:intergenic | 20.0% |
| !! | AAATAGAAGGAAATAAAAGA+AGG | + | chr4_4:67038479-67038498 | None:intergenic | 20.0% |
| !!! | TTTATTTCCTTCTATTTTCT+AGG | - | chr4_4:67038482-67038501 | Msa0697060:CDS | 20.0% |
| !!! | TTTTTTATATGATTACGGTT+TGG | - | chr4_4:67038615-67038634 | Msa0697060:CDS | 20.0% |
| !! | ATATTCAAAGAGGTAAATTA+AGG | + | chr4_4:67038722-67038741 | None:intergenic | 20.0% |
| !! | GATAATCTCTATTAAGAATT+TGG | + | chr4_4:67039031-67039050 | None:intergenic | 20.0% |
| !! | AATTCTTAATAGAGATTATC+AGG | - | chr4_4:67039031-67039050 | Msa0697060:CDS | 20.0% |
| !! | ATTCTTAATAGAGATTATCA+GGG | - | chr4_4:67039032-67039051 | Msa0697060:CDS | 20.0% |
| !!! | TTTATTTTCTTATACAGCAA+AGG | + | chr4_4:67039084-67039103 | None:intergenic | 20.0% |
| !! | GCTGTATAAGAAAATAAATA+AGG | - | chr4_4:67039086-67039105 | Msa0697060:intron | 20.0% |
| !!! | AATAAGGCTATTTTATTCAA+TGG | - | chr4_4:67039102-67039121 | Msa0697060:intron | 20.0% |
| !!! | CTTCTAAAGTTTTAGTATTT+GGG | + | chr4_4:67039487-67039506 | None:intergenic | 20.0% |
| !!! | TCTTCTAAAGTTTTAGTATT+TGG | + | chr4_4:67039488-67039507 | None:intergenic | 20.0% |
| !!! | TCGAAAATTTTAATGTCTTT+GGG | + | chr4_4:67039771-67039790 | None:intergenic | 20.0% |
| !!! | ACATTAAAATTTTCGACTTT+TGG | - | chr4_4:67039775-67039794 | Msa0697060:intron | 20.0% |
| !! | TGTATTCTTCCAATTATATT+GGG | - | chr4_4:67039931-67039950 | Msa0697060:intron | 20.0% |
| !!! | CACAATTCTAATTTGTTTTA+GGG | + | chr4_4:67040584-67040603 | None:intergenic | 20.0% |
| !!! | ATTTTTATTGTCATTGTTGT+TGG | - | chr4_4:67040684-67040703 | Msa0697060:intron | 20.0% |
| !!! | ACAGACTTTACATATTATTT+TGG | + | chr4_4:67041008-67041027 | None:intergenic | 20.0% |
| !! | TTGAAAGTTGAAAAGAAAAT+TGG | - | chr4_4:67041147-67041166 | Msa0697060:intron | 20.0% |
| !! | AAAATCTGCTATGTAAAAAT+AGG | + | chr4_4:67041363-67041382 | None:intergenic | 20.0% |
| !! | TCATAAAAGCATATTCAAAG+AGG | + | chr4_4:67038732-67038751 | None:intergenic | 25.0% |
| ! | AAAGAATTTACCATAGAAGA+AGG | + | chr4_4:67038756-67038775 | None:intergenic | 25.0% |
| !!! | CTACTTGTTGTAAAAAAACA+AGG | + | chr4_4:67038799-67038818 | None:intergenic | 25.0% |
| !! | GTAGTTTTTGTGCTAAAATA+AGG | - | chr4_4:67038876-67038895 | Msa0697060:intron | 25.0% |
| ! | GATTAATCTTAACTTCAATG+AGG | + | chr4_4:67038991-67039010 | None:intergenic | 25.0% |
| ! | GAGAGATATATTTCAGAAAA+TGG | - | chr4_4:67039399-67039418 | Msa0697060:CDS | 25.0% |
| ! | AAATCTTGTAATTACCTTGT+TGG | + | chr4_4:67039451-67039470 | None:intergenic | 25.0% |
| !! | TTTTAGTATTTGGGCTTTTT+TGG | + | chr4_4:67039478-67039497 | None:intergenic | 25.0% |
| ! | ATTGAGAAAAAAGAAATTCC+TGG | - | chr4_4:67039697-67039716 | Msa0697060:intron | 25.0% |
| !!! | GTCGAAAATTTTAATGTCTT+TGG | + | chr4_4:67039772-67039791 | None:intergenic | 25.0% |
| ! | AAGTTATTTGTGAAACGATT+AGG | - | chr4_4:67039807-67039826 | Msa0697060:CDS | 25.0% |
| !! | ACATTTTGAACATATAACTG+TGG | + | chr4_4:67039901-67039920 | None:intergenic | 25.0% |
| ! | GTGTATTCTTCCAATTATAT+TGG | - | chr4_4:67039930-67039949 | Msa0697060:intron | 25.0% |
| !!! | CCACAATTCTAATTTGTTTT+AGG | + | chr4_4:67040585-67040604 | None:intergenic | 25.0% |
| ! | CCTAAAACAAATTAGAATTG+TGG | - | chr4_4:67040582-67040601 | Msa0697060:intron | 25.0% |
| ! | TTGGAATTAATCATCCTAAT+AGG | + | chr4_4:67040989-67041008 | None:intergenic | 25.0% |
| !!! | TTTTAGAATCAGCAATGTTA+TGG | + | chr4_4:67041207-67041226 | None:intergenic | 25.0% |
| !!! | TAACATTGCTGATTCTAAAA+TGG | - | chr4_4:67041207-67041226 | Msa0697060:exon | 25.0% |
| TGGTGAGTGGAAATTAAAAT+GGG | + | chr4_4:67038121-67038140 | None:intergenic | 30.0% | |
| AAATTCTAATTAGTGGTGAG+TGG | + | chr4_4:67038134-67038153 | None:intergenic | 30.0% | |
| TAAAGAGGAAGAAGTAATAG+TGG | + | chr4_4:67038203-67038222 | None:intergenic | 30.0% | |
| ATTACTTCTTCCTCTTTATC+TGG | - | chr4_4:67038205-67038224 | Msa0697060:three_prime_UTR | 30.0% | |
| AGCTTGAATTCAAACTGATA+TGG | - | chr4_4:67038266-67038285 | Msa0697060:three_prime_UTR | 30.0% | |
| CTAAGGATTTGATCTCATAT+TGG | - | chr4_4:67038686-67038705 | Msa0697060:CDS | 30.0% | |
| AAATTCTTTGCCCTCAAATA+TGG | - | chr4_4:67038767-67038786 | Msa0697060:CDS | 30.0% | |
| ! | GTTTTTGTGCTAAAATAAGG+TGG | - | chr4_4:67038879-67038898 | Msa0697060:intron | 30.0% |
| ! | AATGAGGTACTAATTCTAAG+TGG | + | chr4_4:67038975-67038994 | None:intergenic | 30.0% |
| TTTCTTATACAGCAAAGGAT+CGG | + | chr4_4:67039079-67039098 | None:intergenic | 30.0% | |
| AGTTAAACAACTGCATGAAT+TGG | + | chr4_4:67039170-67039189 | None:intergenic | 30.0% | |
| TCAATCTGAAGATGTATACA+AGG | + | chr4_4:67039833-67039852 | None:intergenic | 30.0% | |
| TGCAAGTTGCATGAAATATT+TGG | - | chr4_4:67039962-67039981 | Msa0697060:intron | 30.0% | |
| ACATCCAAATATTTGCATCA+AGG | + | chr4_4:67039988-67040007 | None:intergenic | 30.0% | |
| TGCAAATATTTGGATGTTTC+AGG | - | chr4_4:67039991-67040010 | Msa0697060:intron | 30.0% | |
| GAACAAAGACATCAAAGATT+TGG | - | chr4_4:67040483-67040502 | Msa0697060:intron | 30.0% | |
| AAATTAGAATTGTGGAGTTG+AGG | - | chr4_4:67040590-67040609 | Msa0697060:intron | 30.0% | |
| ! | ATATATGAATTTTGTGGACG+TGG | - | chr4_4:67040656-67040675 | Msa0697060:intron | 30.0% |
| ! | AGTTCCTTTGGTTTCTATTA+CGG | + | chr4_4:67040759-67040778 | None:intergenic | 30.0% |
| TTGTGCTTTATGTTTGGTAA+CGG | - | chr4_4:67040156-67040175 | Msa0697060:CDS | 30.0% | |
| TAATATTATGCTTCCAAGTG+AGG | - | chr4_4:67041027-67041046 | Msa0697060:intron | 30.0% | |
| GTGGTGAGTGGAAATTAAAA+TGG | + | chr4_4:67038122-67038141 | None:intergenic | 35.0% | |
| GTTTGAATTCAAGCTCCTAA+TGG | + | chr4_4:67038261-67038280 | None:intergenic | 35.0% | |
| ! | AATGCCTTCATCATTTTGCA+TGG | - | chr4_4:67038319-67038338 | Msa0697060:three_prime_UTR | 35.0% |
| CATACCATGCAAAATGATGA+AGG | + | chr4_4:67038326-67038345 | None:intergenic | 35.0% | |
| TATAGATGAGCAAGAAACGA+GGG | + | chr4_4:67038360-67038379 | None:intergenic | 35.0% | |
| ATATAGATGAGCAAGAAACG+AGG | + | chr4_4:67038361-67038380 | None:intergenic | 35.0% | |
| GCATGCAAGTAATAATGTGA+AGG | + | chr4_4:67038442-67038461 | None:intergenic | 35.0% | |
| TCCTATGTAAGTTCTTGTTC+TGG | - | chr4_4:67038525-67038544 | Msa0697060:CDS | 35.0% | |
| CCTATGTAAGTTCTTGTTCT+GGG | - | chr4_4:67038526-67038545 | Msa0697060:CDS | 35.0% | |
| CTATGTAAGTTCTTGTTCTG+GGG | - | chr4_4:67038527-67038546 | Msa0697060:CDS | 35.0% | |
| ! | TATATGATTACGGTTTGGAC+AGG | - | chr4_4:67038620-67038639 | Msa0697060:CDS | 35.0% |
| CTTAGTTTCTGCATAGGAAT+CGG | + | chr4_4:67038671-67038690 | None:intergenic | 35.0% | |
| CAAATCCTTAGTTTCTGCAT+AGG | + | chr4_4:67038677-67038696 | None:intergenic | 35.0% | |
| ! | CTTTTATGAGCCTTCTTCTA+TGG | - | chr4_4:67038743-67038762 | Msa0697060:CDS | 35.0% |
| AAGGCTGTTACCATATTTGA+GGG | + | chr4_4:67038780-67038799 | None:intergenic | 35.0% | |
| ! | AGTATGCATGATAGTGAGTT+TGG | - | chr4_4:67038817-67038836 | Msa0697060:intron | 35.0% |
| TGAAACCTGATATGGAACAT+GGG | + | chr4_4:67039201-67039220 | None:intergenic | 35.0% | |
| TTCTAACTATACGAGTGTCA+TGG | - | chr4_4:67039575-67039594 | Msa0697060:intron | 35.0% | |
| ! | GGTGGCATTTAAAGTACTTA+AGG | - | chr4_4:67039596-67039615 | Msa0697060:intron | 35.0% |
| GAACAAAGACATCAGAGATT+TGG | - | chr4_4:67039669-67039688 | Msa0697060:intron | 35.0% | |
| !! | TTGGCCTTGATGCAAATATT+TGG | - | chr4_4:67039981-67040000 | Msa0697060:intron | 35.0% |
| ATTCCTGTCATTCCTGAAAT+TGG | - | chr4_4:67040016-67040035 | Msa0697060:intron | 35.0% | |
| TTCCTGTCATTCCTGAAATT+GGG | - | chr4_4:67040017-67040036 | Msa0697060:intron | 35.0% | |
| AAATATGTCACCATGAGACT+GGG | + | chr4_4:67040407-67040426 | None:intergenic | 35.0% | |
| TTTCTTCTTGTGCAGACAAA+TGG | - | chr4_4:67040442-67040461 | Msa0697060:intron | 35.0% | |
| CAAAGACATCAAAGATTTGG+AGG | - | chr4_4:67040486-67040505 | Msa0697060:intron | 35.0% | |
| TGTATGAAGCCTTACTTTCT+CGG | + | chr4_4:67040539-67040558 | None:intergenic | 35.0% | |
| AGGTCATTTGTGAAAGGTTT+AGG | - | chr4_4:67040622-67040641 | Msa0697060:intron | 35.0% | |
| GAGAACCTATGCTAATATTG+TGG | - | chr4_4:67040712-67040731 | Msa0697060:intron | 35.0% | |
| ACTTGCCACAATATTAGCAT+AGG | + | chr4_4:67040720-67040739 | None:intergenic | 35.0% | |
| !! | CTTTATGTTTGGTAACGGTT+AGG | - | chr4_4:67040858-67040877 | Msa0697060:intron | 35.0% |
| ! | TTCTGATAGGTTCTTTTGCA+GGG | + | chr4_4:67040966-67040985 | None:intergenic | 35.0% |
| AGAACCTATCAGAACCTATT+AGG | - | chr4_4:67040972-67040991 | Msa0697060:intron | 35.0% | |
| ! | TCATCCTAATAGGTTCTGAT+AGG | + | chr4_4:67040979-67040998 | None:intergenic | 35.0% |
| ACTTGAGATAACCATGTTTG+AGG | - | chr4_4:67041111-67041130 | Msa0697060:intron | 35.0% | |
| CTTGAGATAACCATGTTTGA+GGG | - | chr4_4:67041112-67041131 | Msa0697060:intron | 35.0% | |
| TATGGTACAGCTATTATCAG+TGG | + | chr4_4:67041189-67041208 | None:intergenic | 35.0% | |
| TAGTAAGTGACATGTGTGAT+TGG | + | chr4_4:67041285-67041304 | None:intergenic | 35.0% | |
| ATGCTGAAGCAATAGCCATT+AGG | - | chr4_4:67038243-67038262 | Msa0697060:three_prime_UTR | 40.0% | |
| CAAGTGGCCTAGAAAATAGA+AGG | + | chr4_4:67038492-67038511 | None:intergenic | 40.0% | |
| CCCAGAACAAGAACTTACAT+AGG | + | chr4_4:67038529-67038548 | None:intergenic | 40.0% | |
| CGATTCCTATGCAGAAACTA+AGG | - | chr4_4:67038669-67038688 | Msa0697060:CDS | 40.0% | |
| CAAGGCTGTTACCATATTTG+AGG | + | chr4_4:67038781-67038800 | None:intergenic | 40.0% | |
| TCATTCCCATGTTCCATATC+AGG | - | chr4_4:67039193-67039212 | Msa0697060:CDS | 40.0% | |
| GTGAAACCTGATATGGAACA+TGG | + | chr4_4:67039202-67039221 | None:intergenic | 40.0% | |
| TTAGCTTAATGTACAGCCAG+AGG | + | chr4_4:67039224-67039243 | None:intergenic | 40.0% | |
| CTGGCTGTACATTAAGCTAA+TGG | - | chr4_4:67039224-67039243 | Msa0697060:CDS | 40.0% | |
| TAAGAAGCTCGTTCAAAGTC+CGG | + | chr4_4:67039270-67039289 | None:intergenic | 40.0% | |
| CATGGAGGTTAAATGACTAC+TGG | - | chr4_4:67039334-67039353 | Msa0697060:CDS | 40.0% | |
| GTTGGCAATGACTTTCTCTA+AGG | + | chr4_4:67039433-67039452 | None:intergenic | 40.0% | |
| AGAGAAAGTCATTGCCAACA+AGG | - | chr4_4:67039434-67039453 | Msa0697060:CDS | 40.0% | |
| TAACTATACGAGTGTCATGG+TGG | - | chr4_4:67039578-67039597 | Msa0697060:intron | 40.0% | |
| TGAATGAAGCCTTACTTGCT+TGG | + | chr4_4:67039725-67039744 | None:intergenic | 40.0% | |
| AGTATTACTCGTGCAGACAA+GGG | + | chr4_4:67039866-67039885 | None:intergenic | 40.0% | |
| TAGTATTACTCGTGCAGACA+AGG | + | chr4_4:67039867-67039886 | None:intergenic | 40.0% | |
| CTTCCAATTATATTGGGCCT+CGG | - | chr4_4:67039937-67039956 | Msa0697060:intron | 40.0% | |
| !!! | TTTTGACTTGGCCCAATTTC+AGG | + | chr4_4:67040031-67040050 | None:intergenic | 40.0% |
| !!! | GCTGATGATGCATTTTGACT+TGG | + | chr4_4:67040043-67040062 | None:intergenic | 40.0% |
| ! | TGTTCCTTTAGTTTCCACTG+TGG | + | chr4_4:67040065-67040084 | None:intergenic | 40.0% |
| CACAGAAGGAAATGCAGAAA+AGG | - | chr4_4:67040128-67040147 | Msa0697060:CDS | 40.0% | |
| AGAAGGAAATGCAGAAAAGG+TGG | - | chr4_4:67040131-67040150 | Msa0697060:CDS | 40.0% | |
| GTGGACTTGTGCTTTATGTT+TGG | - | chr4_4:67040150-67040169 | Msa0697060:CDS | 40.0% | |
| ! | CACATCCTTTTGCTTCTCTA+GGG | + | chr4_4:67040269-67040288 | None:intergenic | 40.0% |
| AGAAGCAAAAGGATGTGGAA+GGG | - | chr4_4:67040272-67040291 | Msa0697060:CDS | 40.0% | |
| GAAATATGTCACCATGAGAC+TGG | + | chr4_4:67040408-67040427 | None:intergenic | 40.0% | |
| TTTGGAGGCTATTGAGAAGA+AGG | - | chr4_4:67040501-67040520 | Msa0697060:intron | 40.0% | |
| TTCCTTCAACCGAGAAAGTA+AGG | - | chr4_4:67040527-67040546 | Msa0697060:intron | 40.0% | |
| GCTTAGAGGTCATTTGTGAA+AGG | - | chr4_4:67040616-67040635 | Msa0697060:intron | 40.0% | |
| TCAGCCGTAATAGAAACCAA+AGG | - | chr4_4:67040752-67040771 | Msa0697060:intron | 40.0% | |
| GTGGACTTGTGCTTTATGTT+TGG | - | chr4_4:67040150-67040169 | Msa0697060:CDS | 40.0% | |
| AAACCTTGATTTCTCACCTG+AGG | - | chr4_4:67040888-67040907 | Msa0697060:intron | 40.0% | |
| AACCTTGATTTCTCACCTGA+GGG | - | chr4_4:67040889-67040908 | Msa0697060:intron | 40.0% | |
| ! | GTTCTGATAGGTTCTTTTGC+AGG | + | chr4_4:67040967-67040986 | None:intergenic | 40.0% |
| AGATAACCATGTTTGAGGGA+GGG | - | chr4_4:67041116-67041135 | Msa0697060:intron | 40.0% | |
| ACAGCTATTATCAGTGGAGA+AGG | + | chr4_4:67041183-67041202 | None:intergenic | 40.0% | |
| ACACACACACACTAGAAATG+TGG | + | chr4_4:67041315-67041334 | None:intergenic | 40.0% | |
| CTTCTTCCTCTTTATCTGGC+AGG | - | chr4_4:67038209-67038228 | Msa0697060:three_prime_UTR | 45.0% | |
| !! | AGTTCTTGTTCTGGGGTGTT+TGG | - | chr4_4:67038534-67038553 | Msa0697060:CDS | 45.0% |
| TCCATATCAGGTTTCACCTC+TGG | - | chr4_4:67039205-67039224 | Msa0697060:CDS | 45.0% | |
| CATCTTCTGCCTCATCATAC+CGG | - | chr4_4:67039248-67039267 | Msa0697060:CDS | 45.0% | |
| GTTCAAAGTCCGGTATGATG+AGG | + | chr4_4:67039260-67039279 | None:intergenic | 45.0% | |
| TAACCTCCATGTGACGATGT+GGG | + | chr4_4:67039325-67039344 | None:intergenic | 45.0% | |
| TTAACCTCCATGTGACGATG+TGG | + | chr4_4:67039326-67039345 | None:intergenic | 45.0% | |
| CTGTCTCTGCACAAGATGTT+CGG | + | chr4_4:67039623-67039642 | None:intergenic | 45.0% | |
| TTCCTGGAACCAAGCAAGTA+AGG | - | chr4_4:67039713-67039732 | Msa0697060:intron | 45.0% | |
| AAGCCGAGGCCCAATATAAT+TGG | + | chr4_4:67039943-67039962 | None:intergenic | 45.0% | |
| AAATGCATCATCAGCCACAG+TGG | - | chr4_4:67040048-67040067 | Msa0697060:intron | 45.0% | |
| TCAGCCACAGTGGAAACTAA+AGG | - | chr4_4:67040058-67040077 | Msa0697060:CDS | 45.0% | |
| ACTTGAGTTCCCACCTTACT+GGG | - | chr4_4:67040194-67040213 | Msa0697060:CDS | 45.0% | |
| ACCTACCCTAGAGAAGCAAA+AGG | - | chr4_4:67040261-67040280 | Msa0697060:CDS | 45.0% | |
| !!! | TCCTTTTGCTTCTCTAGGGT+AGG | + | chr4_4:67040265-67040284 | None:intergenic | 45.0% |
| ! | CCACATCCTTTTGCTTCTCT+AGG | + | chr4_4:67040270-67040289 | None:intergenic | 45.0% |
| CCTAGAGAAGCAAAAGGATG+TGG | - | chr4_4:67040267-67040286 | Msa0697060:CDS | 45.0% | |
| GAGAAGCAAAAGGATGTGGA+AGG | - | chr4_4:67040271-67040290 | Msa0697060:CDS | 45.0% | |
| TTCTACCTTTCCCAGTCTCA+TGG | - | chr4_4:67040394-67040413 | Msa0697060:intron | 45.0% | |
| AGCCTTACTTTCTCGGTTGA+AGG | + | chr4_4:67040532-67040551 | None:intergenic | 45.0% | |
| GACACTTTCAGCAGTTCCTT+TGG | + | chr4_4:67040771-67040790 | None:intergenic | 45.0% | |
| TCCTCAGAGTTCTACACAGA+CGG | - | chr4_4:67040811-67040830 | Msa0697060:intron | 45.0% | |
| ACCTTGATTTCTCACCTGAG+GGG | - | chr4_4:67040890-67040909 | Msa0697060:intron | 45.0% | |
| AAGGAGACACAGGGAAACTA+TGG | - | chr4_4:67040913-67040932 | Msa0697060:intron | 45.0% | |
| ! | GATAGGTTCTTTTGCAGGGT+AGG | + | chr4_4:67040962-67040981 | None:intergenic | 45.0% |
| TACGTGGCCTCTCACATAAA+AGG | - | chr4_4:67041052-67041071 | Msa0697060:intron | 45.0% | |
| ACGTGGCCTCTCACATAAAA+GGG | - | chr4_4:67041053-67041072 | Msa0697060:intron | 45.0% | |
| ! | CTTCCACCCTTTTATGTGAG+AGG | + | chr4_4:67041062-67041081 | None:intergenic | 45.0% |
| GAGATAACCATGTTTGAGGG+AGG | - | chr4_4:67041115-67041134 | Msa0697060:intron | 45.0% | |
| AAATGTCCCTCCCTCAAACA+TGG | + | chr4_4:67041125-67041144 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTATATGATTA+CGG | - | chr4_4:67038610-67038629 | Msa0697060:CDS | 5.0% |
| CCTCTTTATCTGGCAGGTCT+CGG | - | chr4_4:67038215-67038234 | Msa0697060:three_prime_UTR | 50.0% | |
| ! | TTCTAGGCCACTTGTTGCTC+TGG | - | chr4_4:67038498-67038517 | Msa0697060:CDS | 50.0% |
| GGATACACCAGAGCAACAAG+TGG | + | chr4_4:67038508-67038527 | None:intergenic | 50.0% | |
| CAGGGCATGAAATTCCTTCC+TGG | - | chr4_4:67039050-67039069 | Msa0697060:intron | 50.0% | |
| GCCAGAGGTGAAACCTGATA+TGG | + | chr4_4:67039209-67039228 | None:intergenic | 50.0% | |
| TGTGACGATGTGGGGTTTCA+TGG | + | chr4_4:67039316-67039335 | None:intergenic | 50.0% | |
| TGAAACCCCACATCGTCACA+TGG | - | chr4_4:67039316-67039335 | Msa0697060:CDS | 50.0% | |
| AACCTCCATGTGACGATGTG+GGG | + | chr4_4:67039324-67039343 | None:intergenic | 50.0% | |
| AGCCTTACTTGCTTGGTTCC+AGG | + | chr4_4:67039718-67039737 | None:intergenic | 50.0% | |
| TTCATGCAACTTGCAAGCCG+AGG | + | chr4_4:67039957-67039976 | None:intergenic | 50.0% | |
| GGCCCAATTTCAGGAATGAC+AGG | + | chr4_4:67040022-67040041 | None:intergenic | 50.0% | |
| ACAGCAGAGAATGACAGAGC+TGG | - | chr4_4:67040082-67040101 | Msa0697060:CDS | 50.0% | |
| TCCACAGGGTTGTACACAGA+AGG | - | chr4_4:67040114-67040133 | Msa0697060:CDS | 50.0% | |
| TCCTTCTGTGTACAACCCTG+TGG | + | chr4_4:67040118-67040137 | None:intergenic | 50.0% | |
| GACTTGAGTTCCCACCTTAC+TGG | - | chr4_4:67040193-67040212 | Msa0697060:CDS | 50.0% | |
| GTGTTTCCTCCCAGTAAGGT+GGG | + | chr4_4:67040206-67040225 | None:intergenic | 50.0% | |
| TGTGTTTCCTCCCAGTAAGG+TGG | + | chr4_4:67040207-67040226 | None:intergenic | 50.0% | |
| ACCTTACTGGGAGGAAACAC+AGG | - | chr4_4:67040206-67040225 | Msa0697060:CDS | 50.0% | |
| CCTTACTGGGAGGAAACACA+GGG | - | chr4_4:67040207-67040226 | Msa0697060:CDS | 50.0% | |
| TGTCACCATGAGACTGGGAA+AGG | + | chr4_4:67040402-67040421 | None:intergenic | 50.0% | |
| TGGAGTTGAGGCATGCTTAG+AGG | - | chr4_4:67040602-67040621 | Msa0697060:intron | 50.0% | |
| !! | GCTGAAAGTGTCACAGCTTG+TGG | - | chr4_4:67040779-67040798 | Msa0697060:intron | 50.0% |
| AAGTGTCACAGCTTGTGGAG+AGG | - | chr4_4:67040784-67040803 | Msa0697060:intron | 50.0% | |
| TCCCCTCAGGTGAGAAATCA+AGG | + | chr4_4:67040894-67040913 | None:intergenic | 50.0% | |
| TGATTTCTCACCTGAGGGGA+AGG | - | chr4_4:67040894-67040913 | Msa0697060:intron | 50.0% | |
| TGGCCTCTCACATAAAAGGG+TGG | - | chr4_4:67041056-67041075 | Msa0697060:intron | 50.0% | |
| CCGAGACCTGCCAGATAAAG+AGG | + | chr4_4:67038218-67038237 | None:intergenic | 55.0% | |
| CAAAGGATCGGCATCCAGGA+AGG | + | chr4_4:67039067-67039086 | None:intergenic | 55.0% | |
| ACAGCAAAGGATCGGCATCC+AGG | + | chr4_4:67039071-67039090 | None:intergenic | 55.0% | |
| AACCCCACATCGTCACATGG+AGG | - | chr4_4:67039319-67039338 | Msa0697060:CDS | 55.0% | |
| ACTCGTGCAGACAAGGGAGA+GGG | + | chr4_4:67039860-67039879 | None:intergenic | 55.0% | |
| TACTCGTGCAGACAAGGGAG+AGG | + | chr4_4:67039861-67039880 | None:intergenic | 55.0% | |
| GCAGAGAATGACAGAGCTGG+TGG | - | chr4_4:67040085-67040104 | Msa0697060:CDS | 55.0% | |
| AGCTGGTGGAGAGTTTCCAC+AGG | - | chr4_4:67040099-67040118 | Msa0697060:CDS | 55.0% | |
| GCTGGTGGAGAGTTTCCACA+GGG | - | chr4_4:67040100-67040119 | Msa0697060:CDS | 55.0% | |
| TGAGTTCCCACCTTACTGGG+AGG | - | chr4_4:67040197-67040216 | Msa0697060:CDS | 55.0% | |
| CCCTGTGTTTCCTCCCAGTA+AGG | + | chr4_4:67040210-67040229 | None:intergenic | 55.0% | |
| TGTCACAGCTTGTGGAGAGG+AGG | - | chr4_4:67040787-67040806 | Msa0697060:intron | 55.0% | |
| GCCGTCTGTGTAGAACTCTG+AGG | + | chr4_4:67040815-67040834 | None:intergenic | 55.0% | |
| AGACGGCAGTGCAGAAAGAG+TGG | - | chr4_4:67040828-67040847 | Msa0697060:intron | 55.0% | |
| GCTTCCAAGTGAGGACTACG+TGG | - | chr4_4:67041036-67041055 | Msa0697060:intron | 55.0% | |
| ACCTGAGGGGAAGGAGACAC+AGG | - | chr4_4:67040903-67040922 | Msa0697060:intron | 60.0% | |
| CCTGAGGGGAAGGAGACACA+GGG | - | chr4_4:67040904-67040923 | Msa0697060:intron | 60.0% | |
| GAGGCCACGTAGTCCTCACT+TGG | + | chr4_4:67041043-67041062 | None:intergenic | 60.0% | |
| CCCTGTGTCTCCTTCCCCTC+AGG | + | chr4_4:67040907-67040926 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 67038109 | 67041401 | 67038109 | ID=Msa0697060;Name=Msa0697060 |
| chr4_4 | mRNA | 67038109 | 67041401 | 67038109 | ID=Msa0697060-mRNA-1;Parent=Msa0697060;Name=Msa0697060-mRNA-1;_AED=0.40;_eAED=0.40;_QI=126|0.66|0.85|1|0.83|0.71|7|296|397 |
| chr4_4 | exon | 67038109 | 67038797 | 67038109 | ID=Msa0697060-mRNA-1:exon:19580;Parent=Msa0697060-mRNA-1 |
| chr4_4 | exon | 67038967 | 67039053 | 67038967 | ID=Msa0697060-mRNA-1:exon:19579;Parent=Msa0697060-mRNA-1 |
| chr4_4 | exon | 67039174 | 67039497 | 67039174 | ID=Msa0697060-mRNA-1:exon:19578;Parent=Msa0697060-mRNA-1 |
| chr4_4 | exon | 67039781 | 67039873 | 67039781 | ID=Msa0697060-mRNA-1:exon:19577;Parent=Msa0697060-mRNA-1 |
| chr4_4 | exon | 67040055 | 67040295 | 67040055 | ID=Msa0697060-mRNA-1:exon:19576;Parent=Msa0697060-mRNA-1 |
| chr4_4 | exon | 67041170 | 67041229 | 67041170 | ID=Msa0697060-mRNA-1:exon:19575;Parent=Msa0697060-mRNA-1 |
| chr4_4 | exon | 67041280 | 67041401 | 67041280 | ID=Msa0697060-mRNA-1:exon:19574;Parent=Msa0697060-mRNA-1 |
| chr4_4 | five_prime_UTR | 67041280 | 67041401 | 67041280 | ID=Msa0697060-mRNA-1:five_prime_utr;Parent=Msa0697060-mRNA-1 |
| chr4_4 | five_prime_UTR | 67041226 | 67041229 | 67041226 | ID=Msa0697060-mRNA-1:five_prime_utr;Parent=Msa0697060-mRNA-1 |
| chr4_4 | CDS | 67041170 | 67041225 | 67041170 | ID=Msa0697060-mRNA-1:cds;Parent=Msa0697060-mRNA-1 |
| chr4_4 | CDS | 67040055 | 67040295 | 67040055 | ID=Msa0697060-mRNA-1:cds;Parent=Msa0697060-mRNA-1 |
| chr4_4 | CDS | 67039781 | 67039873 | 67039781 | ID=Msa0697060-mRNA-1:cds;Parent=Msa0697060-mRNA-1 |
| chr4_4 | CDS | 67039174 | 67039497 | 67039174 | ID=Msa0697060-mRNA-1:cds;Parent=Msa0697060-mRNA-1 |
| chr4_4 | CDS | 67038967 | 67039053 | 67038967 | ID=Msa0697060-mRNA-1:cds;Parent=Msa0697060-mRNA-1 |
| chr4_4 | CDS | 67038405 | 67038797 | 67038405 | ID=Msa0697060-mRNA-1:cds;Parent=Msa0697060-mRNA-1 |
| chr4_4 | three_prime_UTR | 67038109 | 67038404 | 67038109 | ID=Msa0697060-mRNA-1:three_prime_utr;Parent=Msa0697060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
