AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1259860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1259860 MtrunA17_Chr4g0060931 98.056 360 6 1 1 360 1 359 0.0 736
Msa1259860 MtrunA17_Chr3g0091921 68.750 320 81 7 1 319 1 302 3.98e-144 410
Msa1259860 MtrunA17_Chr6g0453451 62.295 244 81 4 12 248 15 254 2.80e-104 309
Msa1259860 MtrunA17_Chr6g0461661 50.142 353 150 11 2 333 3 350 1.23e-99 300
Msa1259860 MtrunA17_Chr7g0253011 46.701 394 165 14 1 360 1 383 2.24e-98 296
Msa1259860 MtrunA17_Chr6g0484441 67.337 199 52 4 16 205 4 198 8.46e-90 273
Msa1259860 MtrunA17_Chr2g0316971 79.618 157 30 1 17 171 23 179 7.81e-89 272
Msa1259860 MtrunA17_Chr7g0217721 52.632 266 104 4 11 254 13 278 7.28e-82 253
Msa1259860 MtrunA17_Chr3g0139331 71.069 159 40 2 17 173 11 165 1.29e-78 244
Msa1259860 MtrunA17_Chr1g0147421 69.048 168 44 4 9 173 20 182 2.67e-78 244
Msa1259860 MtrunA17_Chr7g0217711 73.510 151 38 2 2 151 5 154 5.70e-73 224
Msa1259860 MtrunA17_Chr2g0312321 44.407 295 126 11 1 291 1 261 8.02e-68 216
Msa1259860 MtrunA17_Chr3g0144271 60.119 168 60 5 2 164 7 172 2.54e-61 202
Msa1259860 MtrunA17_Chr1g0183741 48.691 191 82 4 17 205 10 186 3.18e-59 192
Msa1259860 MtrunA17_Chr4g0056541 60.000 155 53 3 17 167 7 156 7.66e-59 194
Msa1259860 MtrunA17_Chr3g0113001 44.485 272 130 7 62 326 10 267 7.84e-59 192
Msa1259860 MtrunA17_Chr4g0018391 57.792 154 58 3 17 167 7 156 9.41e-59 193
Msa1259860 MtrunA17_Chr8g0359921 55.625 160 71 0 14 173 11 170 1.05e-58 192
Msa1259860 MtrunA17_Chr2g0318101 40.000 275 134 9 5 259 3 266 1.09e-58 193
Msa1259860 MtrunA17_Chr5g0417791 54.375 160 71 1 15 172 1 160 2.93e-58 189
Msa1259860 MtrunA17_Chr5g0405211 52.047 171 75 3 17 184 8 174 3.05e-58 192
Msa1259860 MtrunA17_Chr4g0017921 57.143 168 58 3 17 175 8 170 4.71e-58 192
Msa1259860 MtrunA17_Chr5g0398971 56.962 158 61 3 17 170 7 161 5.81e-58 191
Msa1259860 MtrunA17_Chr4g0042561 46.465 198 95 3 16 211 8 196 8.06e-58 189
Msa1259860 MtrunA17_Chr8g0372121 53.503 157 66 3 17 170 6 158 8.12e-58 190
Msa1259860 MtrunA17_Chr2g0318081 53.293 167 76 1 14 180 13 177 1.73e-57 190
Msa1259860 MtrunA17_Chr7g0252971 52.663 169 69 3 14 171 5 173 7.03e-57 188
Msa1259860 MtrunA17_Chr8g0346001 48.969 194 76 5 2 175 3 193 9.71e-57 191
Msa1259860 MtrunA17_Chr7g0263931 57.595 158 63 3 14 167 8 165 1.06e-56 187
Msa1259860 MtrunA17_Chr2g0309891 55.000 160 61 3 15 168 4 158 2.13e-56 187
Msa1259860 MtrunA17_Chr3g0124761 54.037 161 72 2 14 173 4 163 7.56e-56 184
Msa1259860 MtrunA17_Chr7g0261411 55.263 152 60 3 17 166 10 155 1.02e-55 184
Msa1259860 MtrunA17_Chr2g0309331 52.761 163 69 3 14 172 7 165 1.04e-55 185
Msa1259860 MtrunA17_Chr1g0200561 51.875 160 70 3 17 173 19 174 2.05e-54 182
Msa1259860 MtrunA17_Chr4g0047841 49.153 177 67 3 17 170 15 191 3.15e-54 181
Msa1259860 MtrunA17_Chr8g0384721 53.659 164 67 3 15 173 5 164 8.36e-54 179
Msa1259860 MtrunA17_Chr3g0109821 54.430 158 69 2 15 170 4 160 1.05e-53 187
Msa1259860 MtrunA17_Chr7g0214071 48.936 188 85 5 10 193 8 188 1.62e-53 177
Msa1259860 MtrunA17_Chr6g0481091 53.595 153 67 2 17 167 6 156 4.12e-53 175
Msa1259860 MtrunA17_Chr8g0361731 45.361 194 84 3 19 203 16 196 5.33e-53 180
Msa1259860 MtrunA17_Chr3g0130731 49.432 176 75 3 14 182 4 172 9.78e-53 176
Msa1259860 MtrunA17_Chr5g0433781 53.165 158 70 3 15 170 4 159 2.50e-52 183
Msa1259860 MtrunA17_Chr5g0417001 49.153 177 76 4 13 177 8 182 9.56e-52 176
Msa1259860 MtrunA17_Chr6g0453131 49.693 163 74 2 16 170 14 176 1.31e-51 176
Msa1259860 MtrunA17_Chr2g0326361 51.875 160 63 3 17 167 14 168 3.30e-50 171
Msa1259860 MtrunA17_Chr5g0400461 45.078 193 83 4 17 191 6 193 3.99e-50 171
Msa1259860 MtrunA17_Chr3g0130101 51.592 157 72 2 19 173 9 163 5.33e-50 171
Msa1259860 MtrunA17_Chr4g0054791 47.674 172 83 3 13 179 2 171 5.09e-49 167
Msa1259860 MtrunA17_Chr3g0128151 54.902 153 65 2 17 167 22 172 1.09e-48 172
Msa1259860 MtrunA17_Chr5g0428991 52.663 169 69 4 2 167 15 175 2.13e-48 172
Msa1259860 MtrunA17_Chr1g0197361 48.913 184 81 6 19 195 10 187 2.27e-48 172
Msa1259860 MtrunA17_Chr3g0092671 52.174 161 65 5 19 173 7 161 9.10e-47 166
Msa1259860 MtrunA17_Chr3g0113031 40.550 291 144 11 78 360 1 270 1.11e-46 160
Msa1259860 MtrunA17_Chr8g0364791 47.799 159 79 2 17 173 6 162 3.79e-46 163
Msa1259860 MtrunA17_Chr3g0128111 52.288 153 65 3 20 168 45 193 5.03e-46 157
Msa1259860 MtrunA17_Chr5g0442771 36.268 284 149 10 4 266 3 275 8.64e-46 159
Msa1259860 MtrunA17_Chr4g0076731 49.080 163 70 4 19 177 56 209 1.76e-45 161
Msa1259860 MtrunA17_Chr1g0201021 47.853 163 81 2 13 173 15 175 2.29e-45 163
Msa1259860 MtrunA17_Chr1g0197351 50.932 161 73 2 17 171 42 202 2.42e-45 161
Msa1259860 MtrunA17_Chr8g0384201 45.912 159 82 2 17 173 6 162 9.99e-45 160
Msa1259860 MtrunA17_Chr4g0038751 44.000 175 83 5 1 172 4 166 3.02e-43 151
Msa1259860 MtrunA17_Chr2g0311651 42.328 189 90 5 1 174 9 193 8.70e-43 150
Msa1259860 MtrunA17_Chr2g0311661 42.775 173 84 4 16 173 19 191 5.85e-42 148
Msa1259860 MtrunA17_Chr8g0385991 42.500 160 85 3 17 171 14 171 3.79e-39 139
Msa1259860 MtrunA17_Chr8g0345671 46.012 163 75 7 7 164 1 155 1.39e-37 139
Msa1259860 MtrunA17_Chr3g0131911 40.000 175 92 5 1 167 1 170 2.40e-37 134
Msa1259860 MtrunA17_Chr8g0345691 44.805 154 72 7 17 165 12 157 1.61e-33 128
Msa1259860 MtrunA17_Chr2g0321741 36.723 177 91 4 37 211 12 169 1.41e-32 124
Msa1259860 MtrunA17_Chr2g0321631 37.975 158 90 4 16 165 3 160 4.59e-32 120
Msa1259860 MtrunA17_Chr4g0026141 40.881 159 81 5 17 165 5 160 5.38e-32 120
Msa1259860 MtrunA17_Chr8g0345711 39.264 163 84 6 17 165 12 173 1.79e-30 114
Msa1259860 MtrunA17_Chr7g0266701 39.024 164 88 6 16 168 3 165 1.14e-29 114
Msa1259860 MtrunA17_Chr4g0050701 35.359 181 93 4 17 191 11 173 1.18e-29 112
Msa1259860 MtrunA17_Chr8g0345701 47.222 144 54 7 17 141 7 147 1.15e-28 109
Msa1259860 MtrunA17_Chr8g0345731 43.939 132 67 5 17 141 24 155 1.35e-27 106
Msa1259860 MtrunA17_Chr8g0384351 39.735 151 69 5 17 167 10 138 3.04e-25 100
Msa1259860 MtrunA17_Chr8g0345721 36.129 155 64 5 20 140 38 191 6.30e-24 97.8
Msa1259860 MtrunA17_Chr3g0130321 38.690 168 79 8 13 166 3 160 2.14e-23 96.7
Msa1259860 MtrunA17_Chr7g0243371 53.333 75 33 1 70 142 17 91 3.63e-22 90.5
Msa1259860 MtrunA17_Chr8g0345741 39.496 119 66 5 28 141 2 119 1.26e-20 87.4
Msa1259860 MtrunA17_Chr3g0113011 67.925 53 17 0 11 63 13 65 2.40e-19 81.3
Msa1259860 MtrunA17_Chr3g0113041 64.151 53 19 0 11 63 13 65 1.22e-17 76.6
Msa1259860 MtrunA17_Chr7g0251661 32.308 130 82 5 14 140 7 133 3.92e-17 77.8
Msa1259860 MtrunA17_Chr7g0251651 31.818 132 84 5 12 140 13 141 2.22e-15 73.9
Msa1259860 MtrunA17_Chr7g0251671 30.147 136 85 5 16 146 9 139 6.41e-15 71.6
Msa1259860 MtrunA17_Chr2g0324961 33.793 145 73 6 17 142 49 189 3.26e-12 66.2
Msa1259860 MtrunA17_Chr8g0389661 29.775 178 93 7 15 168 45 214 3.50e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1259860 AT5G61430.1 60.282 355 110 11 10 360 9 336 3.06e-146 417
Msa1259860 AT5G07680.1 56.474 363 121 13 1 360 1 329 4.13e-132 381
Msa1259860 AT5G07680.2 57.349 347 115 13 15 360 1 315 4.18e-128 370
Msa1259860 AT5G61430.2 56.856 299 98 11 66 360 2 273 2.44e-107 316
Msa1259860 AT5G39610.1 70.755 212 56 2 10 221 13 218 2.31e-104 308
Msa1259860 AT3G29035.1 60.311 257 73 5 10 258 17 252 2.74e-99 297
Msa1259860 AT5G18270.2 44.987 389 127 11 1 360 5 335 3.33e-99 297
Msa1259860 AT5G18270.1 44.730 389 128 11 1 360 5 335 1.24e-98 296
Msa1259860 AT3G04060.1 46.726 336 138 5 4 331 7 309 2.05e-93 283
Msa1259860 AT3G15170.1 63.551 214 66 4 11 221 15 219 6.21e-89 270
Msa1259860 AT5G53950.1 76.074 163 37 1 17 177 17 179 2.23e-88 271
Msa1259860 AT3G18400.1 57.511 233 86 5 16 244 4 227 6.44e-85 260
Msa1259860 AT2G24430.2 69.277 166 44 3 10 173 11 171 6.21e-79 245
Msa1259860 AT2G24430.1 69.277 166 44 3 10 173 11 171 6.21e-79 245
Msa1259860 AT1G76420.1 64.671 167 54 2 4 168 9 172 2.93e-72 228
Msa1259860 AT3G12977.1 40.333 300 131 5 16 315 17 268 7.60e-69 218
Msa1259860 AT1G56010.2 41.724 290 130 11 17 291 19 284 4.82e-65 209
Msa1259860 AT4G27410.2 54.217 166 74 1 14 179 11 174 1.57e-60 197
Msa1259860 AT3G04070.2 55.294 170 66 3 11 170 4 173 1.19e-59 196
Msa1259860 AT2G18060.3 54.601 163 67 3 13 172 5 163 2.74e-59 196
Msa1259860 AT2G18060.1 54.601 163 67 3 13 172 5 163 2.74e-59 196
Msa1259860 AT1G12260.2 58.228 158 59 3 17 171 7 160 3.24e-59 195
Msa1259860 AT1G12260.1 58.228 158 59 3 17 171 7 160 4.99e-59 196
Msa1259860 AT4G10350.1 58.974 156 55 3 17 167 9 160 1.82e-58 193
Msa1259860 AT1G62700.1 58.861 158 58 3 17 171 7 160 2.09e-58 194
Msa1259860 AT1G62700.2 58.861 158 58 3 17 171 7 160 2.09e-58 194
Msa1259860 AT4G36160.1 55.346 159 64 3 12 167 5 159 6.03e-58 192
Msa1259860 AT4G36160.3 55.346 159 64 3 12 167 5 159 6.03e-58 192
Msa1259860 AT4G36160.2 55.346 159 64 3 12 167 9 163 7.51e-58 192
Msa1259860 AT3G04070.1 50.538 186 66 3 11 170 4 189 3.79e-57 190
Msa1259860 AT5G04410.1 58.385 161 59 3 17 173 9 165 4.66e-57 195
Msa1259860 AT1G33280.1 57.143 154 58 3 17 167 8 156 1.25e-56 187
Msa1259860 AT1G71930.2 53.247 154 65 2 17 167 9 158 1.53e-56 187
Msa1259860 AT1G71930.1 53.247 154 65 2 17 167 9 158 1.53e-56 187
Msa1259860 AT2G46770.1 52.941 170 66 4 17 172 16 185 1.62e-56 188
Msa1259860 AT5G62380.2 57.143 154 59 3 17 167 7 156 2.22e-56 187
Msa1259860 AT5G62380.1 57.143 154 59 3 17 167 7 156 2.22e-56 187
Msa1259860 AT3G10500.1 55.901 161 63 3 17 173 9 165 2.57e-56 192
Msa1259860 AT1G61110.1 51.667 180 76 4 17 185 16 195 3.77e-56 186
Msa1259860 AT4G27410.3 49.180 183 74 2 14 179 11 191 4.15e-56 186
Msa1259860 AT1G69490.1 55.063 158 69 1 17 172 9 166 6.61e-56 184
Msa1259860 AT1G01720.1 53.614 166 68 3 13 173 3 164 3.13e-55 183
Msa1259860 AT5G66300.1 50.307 163 75 2 11 170 6 165 3.33e-55 183
Msa1259860 AT3G15500.1 51.497 167 79 1 14 180 11 175 4.11e-55 183
Msa1259860 AT1G52890.1 52.000 175 81 2 14 187 11 183 4.93e-55 183
Msa1259860 AT1G33060.1 56.129 155 64 2 17 169 24 176 1.27e-54 190
Msa1259860 AT3G61910.1 49.412 170 72 2 17 172 11 180 1.32e-54 182
Msa1259860 AT1G33060.2 56.129 155 64 2 17 169 24 176 1.50e-54 190
Msa1259860 AT4G35580.1 56.863 153 62 2 17 167 9 159 2.12e-54 187
Msa1259860 AT3G17730.1 54.248 153 66 2 17 167 6 156 2.66e-54 179
Msa1259860 AT4G35580.3 56.863 153 62 2 17 167 9 159 2.89e-54 187
Msa1259860 AT4G35580.2 56.863 153 62 2 17 167 9 159 3.40e-54 187
Msa1259860 AT5G08790.1 53.374 163 72 2 14 173 4 165 1.92e-53 178
Msa1259860 AT1G32770.1 47.500 200 93 4 17 205 16 214 3.19e-53 180
Msa1259860 AT3G10480.1 38.926 298 161 8 17 302 27 315 4.57e-53 182
Msa1259860 AT1G65910.1 52.174 161 73 2 15 173 4 162 5.30e-53 185
Msa1259860 AT1G77450.1 52.121 165 77 2 10 173 3 166 6.36e-53 176
Msa1259860 AT5G46590.1 52.663 169 70 4 17 179 6 170 9.70e-53 176
Msa1259860 AT3G10490.1 53.503 157 70 2 17 171 27 182 9.96e-53 175
Msa1259860 AT3G10480.2 39.262 298 159 8 17 302 27 314 2.36e-52 180
Msa1259860 AT4G28530.1 50.888 169 59 4 17 167 10 172 2.63e-52 177
Msa1259860 AT1G26870.1 45.000 220 99 6 9 217 6 214 2.73e-52 179
Msa1259860 AT5G13180.1 49.714 175 77 4 1 173 1 166 3.14e-52 174
Msa1259860 AT1G79580.3 51.176 170 69 4 14 179 14 173 4.63e-52 177
Msa1259860 AT1G79580.5 51.176 170 69 4 14 179 14 173 4.63e-52 177
Msa1259860 AT1G79580.4 51.176 170 69 4 14 179 14 173 4.63e-52 177
Msa1259860 AT1G79580.2 51.176 170 69 4 14 179 14 173 4.63e-52 177
Msa1259860 AT1G79580.1 51.176 170 69 4 14 179 14 173 4.63e-52 177
Msa1259860 AT3G15510.1 39.721 287 142 10 21 291 21 292 5.42e-52 177
Msa1259860 AT1G54330.1 56.129 155 61 2 15 167 4 153 5.95e-52 175
Msa1259860 AT3G03200.1 54.140 157 65 3 15 167 4 157 1.53e-51 178
Msa1259860 AT2G33480.2 52.663 169 67 4 1 167 1 158 2.28e-51 172
Msa1259860 AT3G10490.2 53.503 157 70 2 17 171 27 182 2.61e-51 177
Msa1259860 AT5G63790.1 50.898 167 78 2 10 173 43 208 3.44e-51 173
Msa1259860 AT5G63790.2 50.898 167 78 2 10 173 53 218 4.33e-51 173
Msa1259860 AT5G46590.2 60.465 129 48 2 17 142 6 134 9.89e-51 171
Msa1259860 AT2G33480.1 52.695 167 72 3 1 167 1 160 1.24e-50 170
Msa1259860 AT5G17260.1 53.503 157 66 3 15 167 4 157 1.79e-50 176
Msa1259860 AT5G39820.1 47.429 175 67 3 19 170 22 194 6.43e-50 171
Msa1259860 AT2G43000.1 44.444 171 93 2 7 176 7 176 6.01e-49 166
Msa1259860 AT4G17980.1 42.995 207 111 3 17 216 6 212 2.12e-48 164
Msa1259860 AT4G17980.2 42.995 207 111 3 17 216 6 212 2.48e-48 165
Msa1259860 AT5G24590.2 52.597 154 68 3 17 167 13 164 4.91e-48 168
Msa1259860 AT3G49530.2 50.292 171 71 7 2 167 3 164 2.48e-47 166
Msa1259860 AT2G02450.1 52.000 150 67 2 19 167 53 198 5.65e-47 164
Msa1259860 AT3G49530.1 50.292 171 71 7 2 167 3 164 7.35e-47 166
Msa1259860 AT2G02450.2 52.000 150 67 2 19 167 53 198 7.94e-47 164
Msa1259860 AT5G64060.1 44.785 163 84 3 14 173 3 162 1.08e-46 162
Msa1259860 AT3G10480.3 45.263 190 68 2 17 171 27 215 1.20e-46 166
Msa1259860 AT1G52880.1 51.250 160 68 2 21 170 21 180 3.59e-46 160
Msa1259860 AT3G12977.2 46.746 169 78 4 66 233 14 171 3.81e-46 157
Msa1259860 AT5G09330.5 45.399 163 83 3 14 173 3 162 4.17e-46 164
Msa1259860 AT5G09330.2 45.399 163 83 3 14 173 3 162 4.17e-46 164
Msa1259860 AT5G09330.4 45.399 163 83 3 14 173 3 162 4.17e-46 164
Msa1259860 AT5G09330.3 45.399 163 83 3 14 173 3 162 4.17e-46 164
Msa1259860 AT5G09330.1 45.399 163 83 3 14 173 3 162 4.17e-46 164
Msa1259860 AT2G27300.1 48.148 162 69 4 17 172 14 166 6.68e-46 160
Msa1259860 AT1G56010.1 39.669 242 104 10 66 291 2 217 5.67e-45 155
Msa1259860 AT2G17040.1 47.134 157 73 3 19 172 8 157 8.24e-45 155
Msa1259860 AT1G34180.3 48.408 157 77 2 19 173 18 172 2.21e-44 159
Msa1259860 AT1G34190.1 47.205 161 73 3 19 173 18 172 8.78e-44 159
Msa1259860 AT1G34180.1 48.408 157 77 2 19 173 18 172 1.12e-43 159
Msa1259860 AT1G34180.4 45.562 169 76 3 19 173 18 184 1.23e-42 154
Msa1259860 AT5G22290.1 46.939 147 69 2 19 164 23 161 1.85e-42 151
Msa1259860 AT1G34180.2 45.562 169 76 3 19 173 18 184 5.15e-42 154
Msa1259860 AT3G12910.1 43.258 178 85 5 11 173 15 191 6.91e-42 148
Msa1259860 AT1G32510.1 40.465 215 97 7 17 218 6 202 8.41e-42 147
Msa1259860 AT1G32870.2 48.466 163 80 2 13 173 6 166 2.35e-41 152
Msa1259860 AT1G32870.1 48.466 163 80 2 13 173 6 166 2.68e-41 152
Msa1259860 AT1G32870.3 48.466 163 80 2 13 173 42 202 5.74e-41 151
Msa1259860 AT3G44290.2 45.000 160 73 3 19 172 16 166 2.03e-40 142
Msa1259860 AT3G44290.1 45.000 160 73 3 19 172 16 166 4.37e-40 144
Msa1259860 AT5G04395.1 48.592 142 57 2 17 142 28 169 3.42e-37 132
Msa1259860 AT4G10350.2 57.658 111 38 3 62 167 7 113 1.04e-35 132
Msa1259860 AT4G28530.2 46.875 128 50 2 17 126 10 137 7.00e-31 119
Msa1259860 AT2G33480.3 57.143 98 40 1 70 167 8 103 3.28e-30 115
Msa1259860 AT4G01550.1 39.873 158 82 5 20 171 7 157 1.21e-28 116
Msa1259860 AT3G44350.2 38.182 165 91 5 16 172 4 165 5.02e-28 110
Msa1259860 AT5G64530.1 34.031 191 91 5 15 191 1 170 1.36e-27 107
Msa1259860 AT3G04420.2 38.854 157 85 4 15 167 1 150 2.36e-27 109
Msa1259860 AT3G04420.1 38.854 157 85 4 15 167 1 150 5.54e-27 109
Msa1259860 AT1G02230.1 38.922 167 83 7 18 177 4 158 8.27e-27 109
Msa1259860 AT5G22380.1 36.025 161 94 5 20 172 8 167 1.71e-26 105
Msa1259860 AT5G64530.2 40.769 130 63 3 15 142 1 118 2.04e-25 100
Msa1259860 AT4G01520.1 35.758 165 92 6 15 172 2 159 3.12e-25 103
Msa1259860 AT4G01540.3 36.250 160 88 6 20 172 7 159 1.11e-24 104
Msa1259860 AT3G44350.1 38.776 147 80 4 16 154 4 148 1.64e-24 98.6
Msa1259860 AT4G01540.4 36.250 160 88 6 20 172 7 159 1.70e-24 103
Msa1259860 AT4G01540.1 36.250 160 88 6 20 172 7 159 2.19e-24 104
Msa1259860 AT4G01540.2 36.250 160 88 6 20 172 7 159 2.36e-24 103
Msa1259860 AT2G18060.2 56.410 78 30 2 95 172 2 75 5.46e-24 100
Msa1259860 AT1G02220.1 40.000 130 71 3 15 140 1 127 2.35e-23 100
Msa1259860 AT3G10490.4 54.878 82 36 1 90 171 2 82 7.94e-23 98.2
Msa1259860 AT3G10490.3 54.878 82 36 1 90 171 2 82 7.94e-23 98.2
Msa1259860 AT1G02250.1 31.532 222 106 9 15 194 1 218 9.19e-23 98.2
Msa1259860 AT1G01010.1 33.491 212 105 10 20 215 6 197 5.44e-22 97.1
Msa1259860 AT2G43000.2 40.404 99 58 1 78 176 1 98 5.82e-21 89.7
Msa1259860 AT5G14000.1 35.802 162 94 4 15 173 13 167 1.05e-20 89.4
Msa1259860 AT5G14000.2 38.571 140 80 3 15 150 13 150 2.59e-20 87.0
Msa1259860 AT5G50820.1 32.941 170 84 7 15 169 15 169 1.32e-17 80.5
Msa1259860 AT3G56530.1 30.921 152 98 3 17 165 52 199 6.60e-16 78.2
Msa1259860 AT5G22290.2 46.377 69 29 1 96 164 2 62 6.81e-16 76.6
Msa1259860 AT3G55210.1 33.721 172 90 8 17 172 11 174 1.74e-15 76.3
Msa1259860 AT5G14490.1 33.562 146 73 4 17 142 58 199 1.93e-13 71.2
Msa1259860 AT5G14490.4 33.562 146 73 4 17 142 55 196 2.12e-13 70.9
Msa1259860 AT5G14490.3 34.266 143 76 4 17 142 58 199 3.14e-13 70.5
Msa1259860 AT5G14490.2 34.266 143 76 4 17 142 55 196 3.37e-13 69.7
Msa1259860 AT4G29230.2 30.460 174 88 7 17 165 47 212 2.69e-12 68.2
Msa1259860 AT3G04430.1 31.061 132 77 4 23 141 6 136 3.20e-12 65.5
Msa1259860 AT4G28500.1 34.028 144 75 5 17 142 59 200 3.61e-12 67.0
Msa1259860 AT3G56520.1 27.473 182 94 8 17 179 8 170 4.16e-12 64.7

Find 61 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTCAACAACTCAATTTA+TGG 0.161606 8_2:-61682305 Msa1259860:CDS
AAGAATACCTTTGCAGCTTT+TGG 0.230826 8_2:+61682665 None:intergenic
GATTCACTTGGTAATGAATT+TGG 0.258463 8_2:-61682461 Msa1259860:CDS
CGTTTCAGTCTTATCAAATA+AGG 0.280400 8_2:-61683237 Msa1259860:CDS
AAGTCATTACCTTTACAAAA+AGG 0.312749 8_2:-61683153 Msa1259860:CDS
CCATTAGAAGATGAAATTCT+TGG 0.319020 8_2:+61682248 None:intergenic
CAATATCCTAGTTCTGTTTG+TGG 0.332743 8_2:-61682188 Msa1259860:CDS
CCAAGAATTTCATCTTCTAA+TGG 0.346332 8_2:-61682248 Msa1259860:CDS
GAGAAGATGGATTTGCCTCC+TGG 0.385429 8_2:-61683209 Msa1259860:CDS
AATCAAACAATTGAATGATT+CGG 0.401710 8_2:-61682390 Msa1259860:CDS
CTTATAAGCTCTTCATCAGT+TGG 0.407970 8_2:+61683173 None:intergenic
GCAGGGTATTGGAAAGCAAC+TGG 0.414845 8_2:-61682836 Msa1259860:CDS
AGAGACAGAAAATATCCAAC+TGG 0.424929 8_2:-61682884 Msa1259860:CDS
GAGCAACAGAAGCAGGGTAT+TGG 0.425676 8_2:-61682847 Msa1259860:CDS
ACAAACAGAGCAACAGAAGC+AGG 0.435579 8_2:-61682854 Msa1259860:CDS
TATTTCTGGTATAATGAGGT+TGG 0.436493 8_2:-61682483 Msa1259860:CDS
CATTAGAAGATGAAATTCTT+GGG 0.450617 8_2:+61682249 None:intergenic
ATCAATTGAGTTGGAGAAGC+AGG 0.451718 8_2:+61682358 None:intergenic
CTGATTCGTCGAATTCGATT+GGG 0.452226 8_2:-61682415 Msa1259860:CDS
AGAATGAATGGGTGATTTGT+AGG 0.455073 8_2:-61682541 Msa1259860:CDS
CCTCAACAAGTCTGAACCTT+GGG 0.462640 8_2:-61683087 Msa1259860:CDS
AATTTCTCTGCAAGAGCCAT+TGG 0.466190 8_2:-61683119 Msa1259860:CDS
CTGTTTGTCCTCAACCCAGT+TGG 0.474621 8_2:+61682869 None:intergenic
ACTGATTCGTCGAATTCGAT+TGG 0.482670 8_2:-61682416 Msa1259860:CDS
CACATATTTCTGGTATAATG+AGG 0.489545 8_2:-61682487 Msa1259860:CDS
GATGAGTGTATCACAGGAAA+CGG 0.491856 8_2:-61682093 Msa1259860:CDS
AAATAAGGAAGATGAGAAGA+TGG 0.493958 8_2:-61683222 Msa1259860:CDS
TTATAAGCTCTTCATCAGTT+GGG 0.498830 8_2:+61683174 None:intergenic
TCAACAGCTGCAACAGAAGC+AGG 0.510943 8_2:+61681975 None:intergenic
TCTTTGAACATCAATTGAGT+TGG 0.511446 8_2:+61682349 None:intergenic
GAAAATATCCAACTGGGTTG+AGG 0.516250 8_2:-61682877 Msa1259860:CDS
ATGCATGAATATCGACTTGA+GGG 0.521465 8_2:-61682710 Msa1259860:CDS
TACTTACATGGTAAATCCCA+AGG 0.522817 8_2:+61683071 None:intergenic
ATGAATCAAAGATCCCTCCT+TGG 0.526043 8_2:+61682324 None:intergenic
CCCAAGGTTCAGACTTGTTG+AGG 0.528521 8_2:+61683087 None:intergenic
GTTGGGTGAAATCGAAATCC+AGG 0.529612 8_2:+61683191 None:intergenic
TTCAAAGGGAAATCGTTGGT+TGG 0.533657 8_2:-61682797 Msa1259860:CDS
TTCAACAACTCAATTTATGG+TGG 0.537634 8_2:-61682302 Msa1259860:CDS
TACAAAGGAAGAGCACCTAA+AGG 0.552423 8_2:-61682752 Msa1259860:CDS
ATTGCAAATTAACCGCAGCT+TGG 0.557790 8_2:+61682207 None:intergenic
ACAAATGATGAGTGTATCAC+AGG 0.560386 8_2:-61682099 Msa1259860:CDS
TAATCTTCCAAAAGCTGCAA+AGG 0.563656 8_2:-61682672 Msa1259860:intron
TGCATACCACAAACAGAACT+AGG 0.564682 8_2:+61682182 None:intergenic
GAATGAATGGGTGATTTGTA+GGG 0.566421 8_2:-61682540 Msa1259860:CDS
AGAGCTTTGTATGAAAACAA+TGG 0.572452 8_2:-61682143 Msa1259860:CDS
GCTGCAACAGAAGCAGGTGG+TGG 0.576822 8_2:+61681981 None:intergenic
ACCTCAACAAGTCTGAACCT+TGG 0.581627 8_2:-61683088 Msa1259860:CDS
CAGGGTATTGGAAAGCAACT+GGG 0.599644 8_2:-61682835 Msa1259860:CDS
TATGCATGAATATCGACTTG+AGG 0.612535 8_2:-61682711 Msa1259860:CDS
ATTGATGTTCAAAGAAACCA+AGG 0.616657 8_2:-61682341 Msa1259860:CDS
GAATTCGACGAATCAGTAAG+TGG 0.627084 8_2:+61682422 None:intergenic
GTTGAGGTCTACATCACCAA+TGG 0.634909 8_2:+61683103 None:intergenic
ATAATGAGGTTGGATTCACT+TGG 0.646475 8_2:-61682473 Msa1259860:CDS
CAAACAGAGCAACAGAAGCA+GGG 0.648037 8_2:-61682853 Msa1259860:CDS
GAGACAGAAAATATCCAACT+GGG 0.662566 8_2:-61682883 Msa1259860:CDS
ATGTTCAAAGAAACCAAGGA+GGG 0.670364 8_2:-61682337 Msa1259860:CDS
ATACTCTAATAACCAAGCTG+CGG 0.671775 8_2:-61682219 Msa1259860:CDS
TTCGACGAATCAGTAAGTGG+TGG 0.693712 8_2:+61682425 None:intergenic
ACAGCTGCAACAGAAGCAGG+TGG 0.707691 8_2:+61681978 None:intergenic
GATGTTCAAAGAAACCAAGG+AGG 0.712058 8_2:-61682338 Msa1259860:CDS
GGGTGAAATCGAAATCCAGG+AGG 0.750114 8_2:+61683194 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTGTTTTGAAATTT+TGG - chr8_2:61682234-61682253 Msa1259860:CDS 10.0%
!!! TTTTTTTGTTTTGAAATTTT+GGG - chr8_2:61682235-61682254 Msa1259860:CDS 10.0%
!!! TTTTTTTTGTTTTGAAATTT+TGG - chr8_2:61682234-61682253 Msa1259860:CDS 10.0%
!!! TTTTTTTGTTTTGAAATTTT+GGG - chr8_2:61682235-61682254 Msa1259860:CDS 10.0%
!!! AAAGATAAAGAAATTTTCAA+AGG - chr8_2:61682380-61682399 Msa1259860:CDS 15.0%
!!! AAGATAAAGAAATTTTCAAA+GGG - chr8_2:61682381-61682400 Msa1259860:CDS 15.0%
!!! AAAGATAAAGAAATTTTCAA+AGG - chr8_2:61682380-61682399 Msa1259860:CDS 15.0%
!!! AAGATAAAGAAATTTTCAAA+GGG - chr8_2:61682381-61682400 Msa1259860:CDS 15.0%
!!! AATCAATAACCTTTTTGTAA+AGG + chr8_2:61682051-61682070 None:intergenic 20.0%
!! AAGATTCATATCAAATTCAA+AGG + chr8_2:61682196-61682215 None:intergenic 20.0%
!!! GTTTTAGTTAAAGCAAAAAT+GGG - chr8_2:61682257-61682276 Msa1259860:CDS 20.0%
!! TAAAGGAGAAAAAAGTAATT+GGG - chr8_2:61682457-61682476 Msa1259860:CDS 20.0%
!!! ATTCAAAAGGCATAAAAAAA+TGG + chr8_2:61682598-61682617 None:intergenic 20.0%
!! AATCCAAATTCAAATTCAAA+AGG + chr8_2:61682611-61682630 None:intergenic 20.0%
!! TTTGAATTTGAATTTGGATT+TGG - chr8_2:61682611-61682630 Msa1259860:intron 20.0%
!! AATCAAACAATTGAATGATT+CGG - chr8_2:61682802-61682821 Msa1259860:CDS 20.0%
!!! AAATTTTGATATTGGTAGAA+GGG - chr8_2:61683165-61683184 Msa1259860:CDS 20.0%
!!! AATCAATAACCTTTTTGTAA+AGG + chr8_2:61682051-61682070 None:intergenic 20.0%
!! AAGATTCATATCAAATTCAA+AGG + chr8_2:61682196-61682215 None:intergenic 20.0%
!!! GTTTTAGTTAAAGCAAAAAT+GGG - chr8_2:61682257-61682276 Msa1259860:CDS 20.0%
!! TAAAGGAGAAAAAAGTAATT+GGG - chr8_2:61682457-61682476 Msa1259860:CDS 20.0%
!!! ATTCAAAAGGCATAAAAAAA+TGG + chr8_2:61682598-61682617 None:intergenic 20.0%
!! AATCCAAATTCAAATTCAAA+AGG + chr8_2:61682611-61682630 None:intergenic 20.0%
!! TTTGAATTTGAATTTGGATT+TGG - chr8_2:61682611-61682630 Msa1259860:intron 20.0%
!! AATCAAACAATTGAATGATT+CGG - chr8_2:61682802-61682821 Msa1259860:CDS 20.0%
!!! AAATTTTGATATTGGTAGAA+GGG - chr8_2:61683165-61683184 Msa1259860:CDS 20.0%
! AAGTCATTACCTTTACAAAA+AGG - chr8_2:61682039-61682058 Msa1259860:CDS 25.0%
!!! TTTGATTGGTTTTACTTACA+TGG + chr8_2:61682136-61682155 None:intergenic 25.0%
! AAAAGGTGAAAACAAAAAGT+GGG + chr8_2:61682167-61682186 None:intergenic 25.0%
! AAAAAGGTGAAAACAAAAAG+TGG + chr8_2:61682168-61682187 None:intergenic 25.0%
! AAATTCAAAGGTGGTAAAAA+AGG + chr8_2:61682184-61682203 None:intergenic 25.0%
! ATTCATATCAAATTCAAAGG+TGG + chr8_2:61682193-61682212 None:intergenic 25.0%
!!! GGTTTTAGTTAAAGCAAAAA+TGG - chr8_2:61682256-61682275 Msa1259860:CDS 25.0%
!!! AAAACTCTTGTTTTCTACAA+AGG - chr8_2:61682425-61682444 Msa1259860:CDS 25.0%
!!! CAATTACTTTTTTCTCCTTT+AGG + chr8_2:61682458-61682477 None:intergenic 25.0%
! CTAAAGGAGAAAAAAGTAAT+TGG - chr8_2:61682456-61682475 Msa1259860:CDS 25.0%
!! ATGCCTTTTGAATTTGAATT+TGG - chr8_2:61682605-61682624 Msa1259860:intron 25.0%
! TCATTCAACAACTCAATTTA+TGG - chr8_2:61682887-61682906 Msa1259860:CDS 25.0%
! CATTAGAAGATGAAATTCTT+GGG + chr8_2:61682946-61682965 None:intergenic 25.0%
!!! GTTGTGTCAAATTTTGATAT+TGG - chr8_2:61683157-61683176 Msa1259860:CDS 25.0%
!!! CAAATTTTGATATTGGTAGA+AGG - chr8_2:61683164-61683183 Msa1259860:CDS 25.0%
! AAGTCATTACCTTTACAAAA+AGG - chr8_2:61682039-61682058 Msa1259860:CDS 25.0%
!!! TTTGATTGGTTTTACTTACA+TGG + chr8_2:61682136-61682155 None:intergenic 25.0%
! AAAAGGTGAAAACAAAAAGT+GGG + chr8_2:61682167-61682186 None:intergenic 25.0%
! AAAAAGGTGAAAACAAAAAG+TGG + chr8_2:61682168-61682187 None:intergenic 25.0%
! AAATTCAAAGGTGGTAAAAA+AGG + chr8_2:61682184-61682203 None:intergenic 25.0%
! ATTCATATCAAATTCAAAGG+TGG + chr8_2:61682193-61682212 None:intergenic 25.0%
!!! GGTTTTAGTTAAAGCAAAAA+TGG - chr8_2:61682256-61682275 Msa1259860:CDS 25.0%
!!! AAAACTCTTGTTTTCTACAA+AGG - chr8_2:61682425-61682444 Msa1259860:CDS 25.0%
!!! CAATTACTTTTTTCTCCTTT+AGG + chr8_2:61682458-61682477 None:intergenic 25.0%
! CTAAAGGAGAAAAAAGTAAT+TGG - chr8_2:61682456-61682475 Msa1259860:CDS 25.0%
!! ATGCCTTTTGAATTTGAATT+TGG - chr8_2:61682605-61682624 Msa1259860:intron 25.0%
! TCATTCAACAACTCAATTTA+TGG - chr8_2:61682887-61682906 Msa1259860:CDS 25.0%
! CATTAGAAGATGAAATTCTT+GGG + chr8_2:61682946-61682965 None:intergenic 25.0%
!!! GTTGTGTCAAATTTTGATAT+TGG - chr8_2:61683157-61683176 Msa1259860:CDS 25.0%
!!! CAAATTTTGATATTGGTAGA+AGG - chr8_2:61683164-61683183 Msa1259860:CDS 25.0%
! CGTTTCAGTCTTATCAAATA+AGG - chr8_2:61681955-61681974 Msa1259860:CDS 30.0%
AAATAAGGAAGATGAGAAGA+TGG - chr8_2:61681970-61681989 Msa1259860:CDS 30.0%
TTATAAGCTCTTCATCAGTT+GGG + chr8_2:61682021-61682040 None:intergenic 30.0%
CAAAAATGGGAGAAAAAGAA+TGG - chr8_2:61682270-61682289 Msa1259860:CDS 30.0%
! AATTTTCAAAGGGAAATCGT+TGG - chr8_2:61682391-61682410 Msa1259860:CDS 30.0%
! ATTGTGTTTTGCAGAATGAA+TGG - chr8_2:61682639-61682658 Msa1259860:intron 30.0%
! TTGTGTTTTGCAGAATGAAT+GGG - chr8_2:61682640-61682659 Msa1259860:intron 30.0%
GGGAAAAAAACACATATTTC+TGG - chr8_2:61682695-61682714 Msa1259860:CDS 30.0%
!! CACATATTTCTGGTATAATG+AGG - chr8_2:61682705-61682724 Msa1259860:CDS 30.0%
!! TATTTCTGGTATAATGAGGT+TGG - chr8_2:61682709-61682728 Msa1259860:CDS 30.0%
!! GATTCACTTGGTAATGAATT+TGG - chr8_2:61682731-61682750 Msa1259860:CDS 30.0%
TCTTTGAACATCAATTGAGT+TGG + chr8_2:61682846-61682865 None:intergenic 30.0%
ATTGATGTTCAAAGAAACCA+AGG - chr8_2:61682851-61682870 Msa1259860:CDS 30.0%
TTCAACAACTCAATTTATGG+TGG - chr8_2:61682890-61682909 Msa1259860:CDS 30.0%
CCATTAGAAGATGAAATTCT+TGG + chr8_2:61682947-61682966 None:intergenic 30.0%
CCAAGAATTTCATCTTCTAA+TGG - chr8_2:61682944-61682963 Msa1259860:intron 30.0%
! AGAGCTTTGTATGAAAACAA+TGG - chr8_2:61683049-61683068 Msa1259860:intron 30.0%
! TTGATTTTCATGGTACTTTG+TGG - chr8_2:61683236-61683255 Msa1259860:CDS 30.0%
! CGTTTCAGTCTTATCAAATA+AGG - chr8_2:61681955-61681974 Msa1259860:CDS 30.0%
AAATAAGGAAGATGAGAAGA+TGG - chr8_2:61681970-61681989 Msa1259860:CDS 30.0%
TTATAAGCTCTTCATCAGTT+GGG + chr8_2:61682021-61682040 None:intergenic 30.0%
CAAAAATGGGAGAAAAAGAA+TGG - chr8_2:61682270-61682289 Msa1259860:CDS 30.0%
! AATTTTCAAAGGGAAATCGT+TGG - chr8_2:61682391-61682410 Msa1259860:CDS 30.0%
! ATTGTGTTTTGCAGAATGAA+TGG - chr8_2:61682639-61682658 Msa1259860:intron 30.0%
! TTGTGTTTTGCAGAATGAAT+GGG - chr8_2:61682640-61682659 Msa1259860:intron 30.0%
GGGAAAAAAACACATATTTC+TGG - chr8_2:61682695-61682714 Msa1259860:CDS 30.0%
!! CACATATTTCTGGTATAATG+AGG - chr8_2:61682705-61682724 Msa1259860:CDS 30.0%
!! TATTTCTGGTATAATGAGGT+TGG - chr8_2:61682709-61682728 Msa1259860:CDS 30.0%
!! GATTCACTTGGTAATGAATT+TGG - chr8_2:61682731-61682750 Msa1259860:CDS 30.0%
TCTTTGAACATCAATTGAGT+TGG + chr8_2:61682846-61682865 None:intergenic 30.0%
ATTGATGTTCAAAGAAACCA+AGG - chr8_2:61682851-61682870 Msa1259860:CDS 30.0%
TTCAACAACTCAATTTATGG+TGG - chr8_2:61682890-61682909 Msa1259860:CDS 30.0%
CCATTAGAAGATGAAATTCT+TGG + chr8_2:61682947-61682966 None:intergenic 30.0%
CCAAGAATTTCATCTTCTAA+TGG - chr8_2:61682944-61682963 Msa1259860:intron 30.0%
! AGAGCTTTGTATGAAAACAA+TGG - chr8_2:61683049-61683068 Msa1259860:intron 30.0%
! TTGATTTTCATGGTACTTTG+TGG - chr8_2:61683236-61683255 Msa1259860:CDS 30.0%
CTTATAAGCTCTTCATCAGT+TGG + chr8_2:61682022-61682041 None:intergenic 35.0%
TACTTACATGGTAAATCCCA+AGG + chr8_2:61682124-61682143 None:intergenic 35.0%
AGTGGGTCTGAAAATTTGAT+TGG + chr8_2:61682150-61682169 None:intergenic 35.0%
AGAGACAGAAAATATCCAAC+TGG - chr8_2:61682308-61682327 Msa1259860:CDS 35.0%
GAGACAGAAAATATCCAACT+GGG - chr8_2:61682309-61682328 Msa1259860:CDS 35.0%
!! TATGCATGAATATCGACTTG+AGG - chr8_2:61682481-61682500 Msa1259860:CDS 35.0%
!! ATGCATGAATATCGACTTGA+GGG - chr8_2:61682482-61682501 Msa1259860:CDS 35.0%
TAATCTTCCAAAAGCTGCAA+AGG - chr8_2:61682520-61682539 Msa1259860:CDS 35.0%
! AAGAATACCTTTGCAGCTTT+TGG + chr8_2:61682530-61682549 None:intergenic 35.0%
! AGAATGAATGGGTGATTTGT+AGG - chr8_2:61682651-61682670 Msa1259860:intron 35.0%
! GAATGAATGGGTGATTTGTA+GGG - chr8_2:61682652-61682671 Msa1259860:intron 35.0%
!! TTTTTCAGAAGAGTTCAGCT+GGG - chr8_2:61682675-61682694 Msa1259860:CDS 35.0%
ATAATGAGGTTGGATTCACT+TGG - chr8_2:61682719-61682738 Msa1259860:CDS 35.0%
ATGTTCAAAGAAACCAAGGA+GGG - chr8_2:61682855-61682874 Msa1259860:CDS 35.0%
ATACTCTAATAACCAAGCTG+CGG - chr8_2:61682973-61682992 Msa1259860:intron 35.0%
!! CAATATCCTAGTTCTGTTTG+TGG - chr8_2:61683004-61683023 Msa1259860:intron 35.0%
ACAAATGATGAGTGTATCAC+AGG - chr8_2:61683093-61683112 Msa1259860:CDS 35.0%
CTTATAAGCTCTTCATCAGT+TGG + chr8_2:61682022-61682041 None:intergenic 35.0%
TACTTACATGGTAAATCCCA+AGG + chr8_2:61682124-61682143 None:intergenic 35.0%
AGTGGGTCTGAAAATTTGAT+TGG + chr8_2:61682150-61682169 None:intergenic 35.0%
AGAGACAGAAAATATCCAAC+TGG - chr8_2:61682308-61682327 Msa1259860:CDS 35.0%
GAGACAGAAAATATCCAACT+GGG - chr8_2:61682309-61682328 Msa1259860:CDS 35.0%
!! TATGCATGAATATCGACTTG+AGG - chr8_2:61682481-61682500 Msa1259860:CDS 35.0%
!! ATGCATGAATATCGACTTGA+GGG - chr8_2:61682482-61682501 Msa1259860:CDS 35.0%
TAATCTTCCAAAAGCTGCAA+AGG - chr8_2:61682520-61682539 Msa1259860:CDS 35.0%
! AAGAATACCTTTGCAGCTTT+TGG + chr8_2:61682530-61682549 None:intergenic 35.0%
! AGAATGAATGGGTGATTTGT+AGG - chr8_2:61682651-61682670 Msa1259860:intron 35.0%
! GAATGAATGGGTGATTTGTA+GGG - chr8_2:61682652-61682671 Msa1259860:intron 35.0%
!! TTTTTCAGAAGAGTTCAGCT+GGG - chr8_2:61682675-61682694 Msa1259860:CDS 35.0%
ATAATGAGGTTGGATTCACT+TGG - chr8_2:61682719-61682738 Msa1259860:CDS 35.0%
ATGTTCAAAGAAACCAAGGA+GGG - chr8_2:61682855-61682874 Msa1259860:CDS 35.0%
ATACTCTAATAACCAAGCTG+CGG - chr8_2:61682973-61682992 Msa1259860:intron 35.0%
!! CAATATCCTAGTTCTGTTTG+TGG - chr8_2:61683004-61683023 Msa1259860:intron 35.0%
ACAAATGATGAGTGTATCAC+AGG - chr8_2:61683093-61683112 Msa1259860:CDS 35.0%
AATTTCTCTGCAAGAGCCAT+TGG - chr8_2:61682073-61682092 Msa1259860:CDS 40.0%
GAAAATATCCAACTGGGTTG+AGG - chr8_2:61682315-61682334 Msa1259860:CDS 40.0%
TTCAAAGGGAAATCGTTGGT+TGG - chr8_2:61682395-61682414 Msa1259860:CDS 40.0%
!! TACAAAGGAAGAGCACCTAA+AGG - chr8_2:61682440-61682459 Msa1259860:CDS 40.0%
!! GTTTTTCAGAAGAGTTCAGC+TGG - chr8_2:61682674-61682693 Msa1259860:CDS 40.0%
GAATTCGACGAATCAGTAAG+TGG + chr8_2:61682773-61682792 None:intergenic 40.0%
!! ACTGATTCGTCGAATTCGAT+TGG - chr8_2:61682776-61682795 Msa1259860:CDS 40.0%
! CTGATTCGTCGAATTCGATT+GGG - chr8_2:61682777-61682796 Msa1259860:CDS 40.0%
!! ATCAATTGAGTTGGAGAAGC+AGG + chr8_2:61682837-61682856 None:intergenic 40.0%
GATGTTCAAAGAAACCAAGG+AGG - chr8_2:61682854-61682873 Msa1259860:CDS 40.0%
ATGAATCAAAGATCCCTCCT+TGG + chr8_2:61682871-61682890 None:intergenic 40.0%
ATTGCAAATTAACCGCAGCT+TGG + chr8_2:61682988-61683007 None:intergenic 40.0%
TGCATACCACAAACAGAACT+AGG + chr8_2:61683013-61683032 None:intergenic 40.0%
GATGAGTGTATCACAGGAAA+CGG - chr8_2:61683099-61683118 Msa1259860:CDS 40.0%
!!! GTTGCAGCTGTTGATTTTCA+TGG - chr8_2:61683226-61683245 Msa1259860:CDS 40.0%
AATTTCTCTGCAAGAGCCAT+TGG - chr8_2:61682073-61682092 Msa1259860:CDS 40.0%
GAAAATATCCAACTGGGTTG+AGG - chr8_2:61682315-61682334 Msa1259860:CDS 40.0%
TTCAAAGGGAAATCGTTGGT+TGG - chr8_2:61682395-61682414 Msa1259860:CDS 40.0%
!! TACAAAGGAAGAGCACCTAA+AGG - chr8_2:61682440-61682459 Msa1259860:CDS 40.0%
!! GTTTTTCAGAAGAGTTCAGC+TGG - chr8_2:61682674-61682693 Msa1259860:CDS 40.0%
GAATTCGACGAATCAGTAAG+TGG + chr8_2:61682773-61682792 None:intergenic 40.0%
!! ACTGATTCGTCGAATTCGAT+TGG - chr8_2:61682776-61682795 Msa1259860:CDS 40.0%
! CTGATTCGTCGAATTCGATT+GGG - chr8_2:61682777-61682796 Msa1259860:CDS 40.0%
!! ATCAATTGAGTTGGAGAAGC+AGG + chr8_2:61682837-61682856 None:intergenic 40.0%
GATGTTCAAAGAAACCAAGG+AGG - chr8_2:61682854-61682873 Msa1259860:CDS 40.0%
ATGAATCAAAGATCCCTCCT+TGG + chr8_2:61682871-61682890 None:intergenic 40.0%
ATTGCAAATTAACCGCAGCT+TGG + chr8_2:61682988-61683007 None:intergenic 40.0%
TGCATACCACAAACAGAACT+AGG + chr8_2:61683013-61683032 None:intergenic 40.0%
GATGAGTGTATCACAGGAAA+CGG - chr8_2:61683099-61683118 Msa1259860:CDS 40.0%
!!! GTTGCAGCTGTTGATTTTCA+TGG - chr8_2:61683226-61683245 Msa1259860:CDS 40.0%
GTTGGGTGAAATCGAAATCC+AGG + chr8_2:61682004-61682023 None:intergenic 45.0%
GTTGAGGTCTACATCACCAA+TGG + chr8_2:61682092-61682111 None:intergenic 45.0%
ACCTCAACAAGTCTGAACCT+TGG - chr8_2:61682104-61682123 Msa1259860:CDS 45.0%
CCTCAACAAGTCTGAACCTT+GGG - chr8_2:61682105-61682124 Msa1259860:CDS 45.0%
ACAAACAGAGCAACAGAAGC+AGG - chr8_2:61682338-61682357 Msa1259860:CDS 45.0%
CAAACAGAGCAACAGAAGCA+GGG - chr8_2:61682339-61682358 Msa1259860:CDS 45.0%
!! CAGGGTATTGGAAAGCAACT+GGG - chr8_2:61682357-61682376 Msa1259860:CDS 45.0%
TTCGACGAATCAGTAAGTGG+TGG + chr8_2:61682770-61682789 None:intergenic 45.0%
GTTGGGTGAAATCGAAATCC+AGG + chr8_2:61682004-61682023 None:intergenic 45.0%
GTTGAGGTCTACATCACCAA+TGG + chr8_2:61682092-61682111 None:intergenic 45.0%
ACCTCAACAAGTCTGAACCT+TGG - chr8_2:61682104-61682123 Msa1259860:CDS 45.0%
CCTCAACAAGTCTGAACCTT+GGG - chr8_2:61682105-61682124 Msa1259860:CDS 45.0%
ACAAACAGAGCAACAGAAGC+AGG - chr8_2:61682338-61682357 Msa1259860:CDS 45.0%
CAAACAGAGCAACAGAAGCA+GGG - chr8_2:61682339-61682358 Msa1259860:CDS 45.0%
!! CAGGGTATTGGAAAGCAACT+GGG - chr8_2:61682357-61682376 Msa1259860:CDS 45.0%
TTCGACGAATCAGTAAGTGG+TGG + chr8_2:61682770-61682789 None:intergenic 45.0%
! GAGAAGATGGATTTGCCTCC+TGG - chr8_2:61681983-61682002 Msa1259860:CDS 50.0%
GGGTGAAATCGAAATCCAGG+AGG + chr8_2:61682001-61682020 None:intergenic 50.0%
!! CCCAAGGTTCAGACTTGTTG+AGG + chr8_2:61682108-61682127 None:intergenic 50.0%
CTGTTTGTCCTCAACCCAGT+TGG + chr8_2:61682326-61682345 None:intergenic 50.0%
GAGCAACAGAAGCAGGGTAT+TGG - chr8_2:61682345-61682364 Msa1259860:CDS 50.0%
!! GCAGGGTATTGGAAAGCAAC+TGG - chr8_2:61682356-61682375 Msa1259860:CDS 50.0%
TCAACAGCTGCAACAGAAGC+AGG + chr8_2:61683220-61683239 None:intergenic 50.0%
! GAGAAGATGGATTTGCCTCC+TGG - chr8_2:61681983-61682002 Msa1259860:CDS 50.0%
GGGTGAAATCGAAATCCAGG+AGG + chr8_2:61682001-61682020 None:intergenic 50.0%
!! CCCAAGGTTCAGACTTGTTG+AGG + chr8_2:61682108-61682127 None:intergenic 50.0%
CTGTTTGTCCTCAACCCAGT+TGG + chr8_2:61682326-61682345 None:intergenic 50.0%
GAGCAACAGAAGCAGGGTAT+TGG - chr8_2:61682345-61682364 Msa1259860:CDS 50.0%
!! GCAGGGTATTGGAAAGCAAC+TGG - chr8_2:61682356-61682375 Msa1259860:CDS 50.0%
TCAACAGCTGCAACAGAAGC+AGG + chr8_2:61683220-61683239 None:intergenic 50.0%
ACAGCTGCAACAGAAGCAGG+TGG + chr8_2:61683217-61683236 None:intergenic 55.0%
ACAGCTGCAACAGAAGCAGG+TGG + chr8_2:61683217-61683236 None:intergenic 55.0%
GCTGCAACAGAAGCAGGTGG+TGG + chr8_2:61683214-61683233 None:intergenic 60.0%
GCTGCAACAGAAGCAGGTGG+TGG + chr8_2:61683214-61683233 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 61681947 61683267 61681947 ID=Msa1259860;Name=Msa1259860
chr8_2 mRNA 61681947 61683267 61681947 ID=Msa1259860-mRNA-1;Parent=Msa1259860;Name=Msa1259860-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.33|1|1|1|3|0|360
chr8_2 exon 61683078 61683267 61683078 ID=Msa1259860-mRNA-1:exon:19437;Parent=Msa1259860-mRNA-1
chr8_2 exon 61682673 61682950 61682673 ID=Msa1259860-mRNA-1:exon:19436;Parent=Msa1259860-mRNA-1
chr8_2 exon 61681947 61682561 61681947 ID=Msa1259860-mRNA-1:exon:19435;Parent=Msa1259860-mRNA-1
chr8_2 CDS 61683078 61683267 61683078 ID=Msa1259860-mRNA-1:cds;Parent=Msa1259860-mRNA-1
chr8_2 CDS 61682673 61682950 61682673 ID=Msa1259860-mRNA-1:cds;Parent=Msa1259860-mRNA-1
chr8_2 CDS 61681947 61682561 61681947 ID=Msa1259860-mRNA-1:cds;Parent=Msa1259860-mRNA-1
Gene Sequence

>Msa1259860

ATGGAAAACGTTTCAGTCTTATCAAATAAGGAAGATGAGAAGATGGATTTGCCTCCTGGATTTCGATTTCACCCAACTGATGAAGAGCTTATAAGTCATTACCTTTACAAAAAGGTTATTGATTCAAATTTCTCTGCAAGAGCCATTGGTGATGTAGACCTCAACAAGTCTGAACCTTGGGATTTACCATTTAAAGCAAAAATGGGAGAAAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAATATCCAACTGGGTTGAGGACAAACAGAGCAACAGAAGCAGGGTATTGGAAAGCAACTGGGAAAGATAAAGAAATTTTCAAAGGGAAATCGTTGGTTGGTATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAAAAAAGTAATTGGGTTATGCATGAATATCGACTTGAGGGTAAATTCTCTGTTCATAATCTTCCAAAAGCTGCAAAGAATGAATGGGTGATTTGTAGGGTTTTTCAGAAGAGTTCAGCTGGGAAAAAAACACATATTTCTGGTATAATGAGGTTGGATTCACTTGGTAATGAATTTGGTTGTTCTGTTTTACCACCACTTACTGATTCGTCGAATTCGATTGGGAAAATCAAACAATTGAATGATTCGGCTTACGTGTCCTGCTTCTCCAACTCAATTGATGTTCAAAGAAACCAAGGAGGGATCTTTGATTCATTCAACAACTCAATTTATGGTGGAATTTCTTCACATAATCAACTAGATTTTTTCCCAAGAATTTCATCTTCTAATGGTTCATTATACTCTAATAACCAAGCTGCGGTTAATTTGCAATATCCTAGTTCTGTTTGTGGTATGCAAGATCAAGCAATTTTAAGAGCTTTGTATGAAAACAATGGTTTCAAGACTGAGAGACAGCAACAAATGATGAGTGTATCACAGGAAACGGATCTAACTACTGATATGAATGCTGAAACATGTTCTGTTGTGTCAAATTTTGATATTGGTAGAAGGGATTATGAGAATAATCAGAATCGTCCACCACCTGCTTCTGTTGCAGCTGTTGATTTTCATGGTACTTTGTGGAATTACTAA

Protein sequence

>Msa1259860

MENVSVLSNKEDEKMDLPPGFRFHPTDEELISHYLYKKVIDSNFSARAIGDVDLNKSEPWDLPFKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKAAKNEWVICRVFQKSSAGKKTHISGIMRLDSLGNEFGCSVLPPLTDSSNSIGKIKQLNDSAYVSCFSNSIDVQRNQGGIFDSFNNSIYGGISSHNQLDFFPRISSSNGSLYSNNQAAVNLQYPSSVCGMQDQAILRALYENNGFKTERQQQMMSVSQETDLTTDMNAETCSVVSNFDIGRRDYENNQNRPPPASVAAVDFHGTLWNY*