Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965540 | XP_013453119.1 | 91.188 | 261 | 16 | 2 | 1 | 261 | 1 | 254 | 7.07e-172 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965540 | sp|Q9ZSY8|IAA27_ARATH | 61.189 | 286 | 77 | 9 | 4 | 261 | 26 | 305 | 9.27e-103 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0965540 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0965540 | 0.810628 | 1.048948e-50 | -8.615850e-47 |
| Msa0643470 | Msa0965540 | 0.801268 | 9.755178e-49 | -8.615850e-47 |
| Msa0140780 | Msa0965540 | 0.816140 | 6.448563e-52 | -8.615850e-47 |
| Msa0157290 | Msa0965540 | 0.810905 | 9.134248e-51 | -8.615850e-47 |
| Msa0465950 | Msa0965540 | 0.811187 | 7.936841e-51 | -8.615850e-47 |
| Msa0243100 | Msa0965540 | 0.806586 | 7.653582e-50 | -8.615850e-47 |
| Msa0880140 | Msa0965540 | 0.811887 | 5.591608e-51 | -8.615850e-47 |
| Msa0900180 | Msa0965540 | 0.964804 | 8.632598e-124 | -8.615850e-47 |
| Msa0965540 | Msa1228210 | 0.824628 | 7.280647e-54 | -8.615850e-47 |
| Msa0965540 | Msa1265340 | -0.806424 | 8.282452e-50 | -8.615850e-47 |
| Msa0965540 | Msa1271280 | 0.819790 | 9.651635e-53 | -8.615850e-47 |
| Msa0965540 | Msa1271300 | 0.816720 | 4.781645e-52 | -8.615850e-47 |
| Msa0965540 | Msa1293770 | 0.813008 | 3.181111e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965540 | MtrunA17_Chr6g0486121 | 91.188 | 261 | 16 | 2 | 1 | 261 | 1 | 254 | 6.50e-176 | 484 |
| Msa0965540 | MtrunA17_Chr8g0390281 | 63.251 | 283 | 57 | 7 | 14 | 261 | 23 | 293 | 7.76e-112 | 323 |
| Msa0965540 | MtrunA17_Chr8g0366881 | 55.862 | 290 | 93 | 6 | 7 | 261 | 59 | 348 | 2.35e-98 | 291 |
| Msa0965540 | MtrunA17_Chr5g0411501 | 54.895 | 286 | 89 | 7 | 15 | 261 | 51 | 335 | 8.83e-97 | 287 |
| Msa0965540 | MtrunA17_Chr2g0331411 | 51.299 | 308 | 93 | 7 | 10 | 261 | 20 | 326 | 1.37e-90 | 271 |
| Msa0965540 | MtrunA17_Chr5g0428141 | 52.525 | 297 | 93 | 10 | 7 | 261 | 57 | 347 | 4.34e-87 | 263 |
| Msa0965540 | MtrunA17_Chr1g0187921 | 50.973 | 257 | 92 | 6 | 13 | 261 | 6 | 236 | 5.20e-76 | 230 |
| Msa0965540 | MtrunA17_Chr1g0190711 | 49.035 | 259 | 98 | 6 | 15 | 260 | 15 | 252 | 1.10e-71 | 220 |
| Msa0965540 | MtrunA17_Chr1g0184791 | 63.354 | 161 | 54 | 2 | 105 | 261 | 86 | 245 | 5.76e-66 | 205 |
| Msa0965540 | MtrunA17_Chr7g0260641 | 61.783 | 157 | 58 | 1 | 105 | 261 | 96 | 250 | 3.35e-65 | 203 |
| Msa0965540 | MtrunA17_Chr1g0184801 | 42.373 | 236 | 91 | 6 | 15 | 250 | 12 | 202 | 2.27e-52 | 169 |
| Msa0965540 | MtrunA17_Chr7g0260621 | 44.068 | 236 | 88 | 6 | 15 | 250 | 11 | 202 | 2.42e-52 | 169 |
| Msa0965540 | MtrunA17_Chr1g0166011 | 42.437 | 238 | 80 | 8 | 15 | 250 | 1 | 183 | 3.33e-51 | 166 |
| Msa0965540 | MtrunA17_Chr1g0187961 | 42.616 | 237 | 69 | 6 | 13 | 249 | 9 | 178 | 4.00e-50 | 162 |
| Msa0965540 | MtrunA17_Chr1g0183251 | 43.407 | 182 | 70 | 4 | 108 | 256 | 82 | 263 | 1.18e-38 | 136 |
| Msa0965540 | MtrunA17_Chr2g0330951 | 37.652 | 247 | 122 | 9 | 21 | 245 | 18 | 254 | 4.15e-36 | 129 |
| Msa0965540 | MtrunA17_Chr4g0004181 | 50.000 | 150 | 44 | 4 | 106 | 253 | 52 | 172 | 4.10e-34 | 121 |
| Msa0965540 | MtrunA17_Chr2g0332141 | 54.717 | 106 | 38 | 3 | 141 | 244 | 6 | 103 | 9.57e-33 | 116 |
| Msa0965540 | MtrunA17_Chr8g0340731 | 32.721 | 272 | 134 | 7 | 9 | 245 | 3 | 260 | 9.57e-33 | 120 |
| Msa0965540 | MtrunA17_Chr3g0137601 | 31.056 | 161 | 79 | 6 | 94 | 245 | 72 | 209 | 7.99e-19 | 82.4 |
| Msa0965540 | MtrunA17_Chr4g0069561 | 36.879 | 141 | 62 | 5 | 105 | 244 | 68 | 182 | 1.63e-18 | 80.9 |
| Msa0965540 | MtrunA17_Chr7g0270851 | 36.434 | 129 | 64 | 3 | 114 | 242 | 45 | 155 | 7.04e-18 | 78.6 |
| Msa0965540 | MtrunA17_Chr1g0193861 | 34.532 | 139 | 74 | 3 | 104 | 242 | 49 | 170 | 1.42e-16 | 75.5 |
| Msa0965540 | MtrunA17_Chr4g0064131 | 29.452 | 146 | 66 | 3 | 106 | 243 | 90 | 206 | 8.82e-15 | 71.2 |
| Msa0965540 | MtrunA17_Chr1g0209181 | 34.483 | 145 | 73 | 5 | 101 | 242 | 43 | 168 | 3.38e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965540 | AT4G29080.1 | 61.189 | 286 | 77 | 9 | 4 | 261 | 26 | 305 | 9.42e-104 | 304 |
| Msa0965540 | AT2G22670.3 | 50.549 | 273 | 107 | 7 | 15 | 260 | 47 | 318 | 3.05e-83 | 252 |
| Msa0965540 | AT2G22670.1 | 50.549 | 273 | 107 | 7 | 15 | 260 | 47 | 318 | 3.05e-83 | 252 |
| Msa0965540 | AT2G22670.4 | 50.549 | 273 | 107 | 7 | 15 | 260 | 64 | 335 | 4.47e-83 | 252 |
| Msa0965540 | AT5G65670.2 | 50.545 | 275 | 107 | 3 | 15 | 260 | 61 | 335 | 6.15e-82 | 249 |
| Msa0965540 | AT5G65670.1 | 50.181 | 277 | 107 | 4 | 15 | 260 | 61 | 337 | 4.97e-80 | 244 |
| Msa0965540 | AT2G22670.5 | 49.817 | 273 | 107 | 8 | 15 | 260 | 47 | 316 | 7.83e-80 | 243 |
| Msa0965540 | AT2G22670.2 | 49.817 | 273 | 107 | 8 | 15 | 260 | 47 | 316 | 7.83e-80 | 243 |
| Msa0965540 | AT3G04730.1 | 48.855 | 262 | 92 | 7 | 15 | 261 | 2 | 236 | 3.02e-75 | 229 |
| Msa0965540 | AT4G14550.1 | 50.397 | 252 | 96 | 7 | 15 | 261 | 1 | 228 | 6.76e-74 | 225 |
| Msa0965540 | AT3G23050.1 | 49.425 | 261 | 95 | 8 | 15 | 261 | 6 | 243 | 5.44e-72 | 221 |
| Msa0965540 | AT1G04250.1 | 46.457 | 254 | 96 | 8 | 15 | 260 | 7 | 228 | 2.31e-69 | 214 |
| Msa0965540 | AT4G14550.2 | 48.548 | 241 | 95 | 6 | 15 | 250 | 1 | 217 | 1.50e-66 | 206 |
| Msa0965540 | AT4G14550.3 | 46.119 | 219 | 89 | 7 | 15 | 228 | 1 | 195 | 2.93e-53 | 171 |
| Msa0965540 | AT3G23050.2 | 45.175 | 228 | 89 | 7 | 15 | 229 | 6 | 210 | 1.23e-51 | 167 |
| Msa0965540 | AT1G04240.1 | 44.068 | 236 | 78 | 8 | 15 | 250 | 5 | 186 | 1.70e-49 | 161 |
| Msa0965540 | AT1G04240.2 | 42.742 | 248 | 88 | 8 | 3 | 250 | 93 | 286 | 1.36e-48 | 162 |
| Msa0965540 | AT5G43700.1 | 39.831 | 236 | 78 | 6 | 15 | 250 | 11 | 182 | 8.61e-46 | 152 |
| Msa0965540 | AT3G23030.1 | 41.350 | 237 | 66 | 7 | 13 | 249 | 7 | 170 | 4.89e-42 | 142 |
| Msa0965540 | AT1G52830.1 | 38.750 | 240 | 91 | 9 | 11 | 250 | 2 | 185 | 1.58e-41 | 141 |
| Msa0965540 | AT3G15540.1 | 40.244 | 246 | 91 | 9 | 14 | 256 | 5 | 197 | 2.24e-41 | 141 |
| Msa0965540 | AT3G23030.2 | 41.350 | 237 | 66 | 7 | 13 | 249 | 94 | 257 | 4.01e-41 | 142 |
| Msa0965540 | AT4G14560.1 | 41.702 | 235 | 63 | 7 | 12 | 246 | 4 | 164 | 1.17e-39 | 135 |
| Msa0965540 | AT4G28640.1 | 44.512 | 164 | 71 | 4 | 103 | 250 | 83 | 242 | 2.93e-37 | 132 |
| Msa0965540 | AT1G04550.2 | 44.633 | 177 | 66 | 6 | 108 | 261 | 69 | 236 | 3.09e-37 | 131 |
| Msa0965540 | AT2G33310.3 | 45.562 | 169 | 64 | 5 | 108 | 255 | 75 | 236 | 5.55e-37 | 131 |
| Msa0965540 | AT2G33310.1 | 45.562 | 169 | 64 | 5 | 108 | 255 | 75 | 236 | 5.55e-37 | 131 |
| Msa0965540 | AT2G33310.2 | 45.562 | 169 | 64 | 5 | 108 | 255 | 76 | 237 | 5.94e-37 | 131 |
| Msa0965540 | AT4G28640.3 | 44.444 | 162 | 70 | 4 | 103 | 248 | 83 | 240 | 6.55e-37 | 131 |
| Msa0965540 | AT3G16500.1 | 36.863 | 255 | 118 | 9 | 7 | 245 | 25 | 252 | 5.73e-36 | 129 |
| Msa0965540 | AT3G16500.2 | 36.863 | 255 | 118 | 9 | 7 | 245 | 25 | 252 | 6.88e-36 | 129 |
| Msa0965540 | AT1G15580.1 | 34.764 | 233 | 74 | 4 | 12 | 244 | 5 | 159 | 8.60e-36 | 125 |
| Msa0965540 | AT4G28640.2 | 45.399 | 163 | 67 | 5 | 103 | 248 | 83 | 240 | 1.05e-35 | 129 |
| Msa0965540 | AT1G04100.1 | 36.994 | 173 | 80 | 4 | 105 | 250 | 90 | 260 | 3.73e-31 | 116 |
| Msa0965540 | AT1G51950.1 | 40.588 | 170 | 76 | 4 | 97 | 245 | 85 | 250 | 5.38e-31 | 116 |
| Msa0965540 | AT4G14550.4 | 41.279 | 172 | 74 | 5 | 15 | 181 | 1 | 150 | 5.07e-30 | 111 |
| Msa0965540 | AT3G23050.3 | 40.437 | 183 | 75 | 6 | 15 | 184 | 6 | 167 | 2.20e-29 | 109 |
| Msa0965540 | AT5G25890.1 | 37.500 | 144 | 68 | 3 | 109 | 252 | 49 | 170 | 3.53e-28 | 106 |
| Msa0965540 | AT3G17600.1 | 37.857 | 140 | 63 | 4 | 103 | 242 | 39 | 154 | 3.00e-22 | 90.5 |
| Msa0965540 | AT3G62100.1 | 38.462 | 104 | 49 | 1 | 140 | 243 | 81 | 169 | 1.04e-18 | 81.3 |
| Msa0965540 | AT2G46990.1 | 37.143 | 105 | 51 | 1 | 140 | 244 | 83 | 172 | 1.99e-18 | 80.9 |
| Msa0965540 | AT4G32280.1 | 25.366 | 205 | 93 | 7 | 86 | 257 | 72 | 249 | 5.74e-15 | 72.8 |
| Msa0965540 | AT4G32280.2 | 32.759 | 116 | 52 | 3 | 142 | 257 | 118 | 207 | 3.35e-14 | 70.1 |
| Msa0965540 | AT1G15050.2 | 33.582 | 134 | 70 | 4 | 115 | 247 | 35 | 150 | 9.13e-14 | 67.4 |
| Msa0965540 | AT3G62100.2 | 37.778 | 90 | 41 | 1 | 140 | 229 | 81 | 155 | 1.67e-13 | 67.0 |
| Msa0965540 | AT2G46990.2 | 37.778 | 90 | 41 | 1 | 140 | 229 | 83 | 157 | 1.70e-13 | 67.0 |
| Msa0965540 | AT1G15050.1 | 33.582 | 134 | 70 | 4 | 115 | 247 | 67 | 182 | 1.86e-13 | 67.4 |
| Msa0965540 | AT2G01200.2 | 34.711 | 121 | 63 | 2 | 127 | 247 | 84 | 188 | 4.58e-13 | 66.6 |
| Msa0965540 | AT2G01200.1 | 34.711 | 121 | 63 | 2 | 127 | 247 | 84 | 188 | 4.58e-13 | 66.6 |
Find 64 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATAAAGGCATCCAAATT+TGG | 0.170065 | 6_3:-93000362 | None:intergenic |
| GTTTCTTAGGTTTGTTAATA+AGG | 0.180337 | 6_3:+93001947 | Msa0965540:three_prime_UTR |
| TACTCTTTATGCATGCTTAA+TGG | 0.190958 | 6_3:+92999202 | Msa0965540:CDS |
| ATGCTTGTTGTTGACAATTA+AGG | 0.211903 | 6_3:+93001925 | Msa0965540:three_prime_UTR |
| AGATCCACTTTCCTCAAGTA+TGG | 0.227669 | 6_3:-93000406 | None:intergenic |
| GTTGACAATTAAGGTTTCTT+AGG | 0.251284 | 6_3:+93001934 | Msa0965540:three_prime_UTR |
| CTATTCAAAGCCAAGTGTTT+AGG | 0.252784 | 6_3:-93001887 | None:intergenic |
| GGCCACCAATCCGTTCTTTC+AGG | 0.268848 | 6_3:+93000287 | Msa0965540:CDS |
| GATGATGTAGAAGCCAAATT+TGG | 0.307716 | 6_3:+93000349 | Msa0965540:CDS |
| TATTCAAAGCCAAGTGTTTA+GGG | 0.308933 | 6_3:-93001886 | None:intergenic |
| ATGAAAAGTGTAGGTCAATT+TGG | 0.319033 | 6_3:+93000922 | Msa0965540:intron |
| TTGACTCTTGCAAGAGGTTA+AGG | 0.334728 | 6_3:+93001473 | Msa0965540:CDS |
| AGTTCTGAAGCAATTGGATT+AGG | 0.360095 | 6_3:+93001505 | Msa0965540:CDS |
| CTTATGTATAATCCTACATA+TGG | 0.369542 | 6_3:+93001827 | Msa0965540:three_prime_UTR |
| TTTCTTAGGTTTGTTAATAA+GGG | 0.374956 | 6_3:+93001948 | Msa0965540:three_prime_UTR |
| TTTGTGTGAAAGTAGATTGA+TGG | 0.380197 | 6_3:+93000972 | Msa0965540:CDS |
| CCTTCACAACAGAACCTTGT+TGG | 0.383043 | 6_3:-92999294 | None:intergenic |
| ATGAAAAGTTCTGAAGCAAT+TGG | 0.388635 | 6_3:+93001499 | Msa0965540:CDS |
| AAGAAGAAGTCTCAGATATA+TGG | 0.397635 | 6_3:+92999352 | Msa0965540:CDS |
| CACAACAGAACCTTGTTGGT+TGG | 0.401071 | 6_3:-92999290 | None:intergenic |
| ATCACCATCTTTATCTTCAT+AGG | 0.403740 | 6_3:-93001025 | None:intergenic |
| TTAATGTTAGAGATAGAGAT+TGG | 0.415512 | 6_3:+93002028 | Msa0965540:three_prime_UTR |
| TGATCTAGGGAACAAATTGT+AGG | 0.417413 | 6_3:+93000262 | Msa0965540:intron |
| TTTCTTCAAACCAATTTCAA+TGG | 0.423741 | 6_3:-92999260 | None:intergenic |
| CTCTCTGGTGATTCAGAACC+AGG | 0.434581 | 6_3:-92999148 | None:intergenic |
| AGATTGATGGATCTCCTTCA+TGG | 0.440946 | 6_3:+93000985 | Msa0965540:CDS |
| GTAGGTCAATTTGGCTCTCA+TGG | 0.457514 | 6_3:+93000931 | Msa0965540:intron |
| GACTTCTTCTTCTCATTCAA+AGG | 0.481249 | 6_3:-92999340 | None:intergenic |
| TTCTTTCAGGAAGAATTCAA+TGG | 0.488415 | 6_3:+93000300 | Msa0965540:CDS |
| AGAAGATCATTATCTCTCTC+TGG | 0.489102 | 6_3:-92999163 | None:intergenic |
| TAAAGTTTCCACTACTACAA+TGG | 0.489709 | 6_3:+92999051 | Msa0965540:exon |
| ATGAAGATAAAGATGGTGAT+TGG | 0.490100 | 6_3:+93001028 | Msa0965540:CDS |
| TATGTAAAAGTTAGCATGGA+TGG | 0.496315 | 6_3:+93000379 | Msa0965540:CDS |
| GAGTTAAGACTTGGTTTACC+TGG | 0.509603 | 6_3:+92999130 | Msa0965540:CDS |
| TTGAATTCTTCCTGAAAGAA+CGG | 0.519997 | 6_3:-93000297 | None:intergenic |
| AAAATATGCACTTACTTCCA+TGG | 0.525031 | 6_3:-93001069 | None:intergenic |
| AGAACTTTCCATTGTAGTAG+TGG | 0.527264 | 6_3:-92999059 | None:intergenic |
| GATCCACTTTCCTCAAGTAT+GGG | 0.530733 | 6_3:-93000405 | None:intergenic |
| TTCCTGAAAGAACGGATTGG+TGG | 0.533390 | 6_3:-93000289 | None:intergenic |
| AATAGAGTGCCCTAAACACT+TGG | 0.534438 | 6_3:+93001877 | Msa0965540:three_prime_UTR |
| TGCTAGTTGGTGATGTTCCA+TGG | 0.551199 | 6_3:+93001052 | Msa0965540:CDS |
| AAGGCTACTGAGTTAAGACT+TGG | 0.551451 | 6_3:+92999121 | Msa0965540:CDS |
| CCTTTATGTAAAAGTTAGCA+TGG | 0.552884 | 6_3:+93000375 | Msa0965540:CDS |
| GACACTATGATTCCATATGT+AGG | 0.572589 | 6_3:-93001839 | None:intergenic |
| TTCTTCCTGAAAGAACGGAT+TGG | 0.577749 | 6_3:-93000292 | None:intergenic |
| CTCACCTATGAAGATAAAGA+TGG | 0.579438 | 6_3:+93001021 | Msa0965540:CDS |
| TGCCCCATACTTGAGGAAAG+TGG | 0.579458 | 6_3:+93000402 | Msa0965540:CDS |
| TTATGCAGCACCAAGAGCCA+TGG | 0.585701 | 6_3:+93001732 | Msa0965540:intron |
| CCAACAAGGTTCTGTTGTGA+AGG | 0.586707 | 6_3:+92999294 | Msa0965540:CDS |
| GTCTTAACTCAGTAGCCTTG+AGG | 0.600451 | 6_3:-92999117 | None:intergenic |
| GATGGTGATTGGATGCTAGT+TGG | 0.601437 | 6_3:+93001039 | Msa0965540:CDS |
| CATCTTTATCTTCATAGGTG+AGG | 0.607712 | 6_3:-93001020 | None:intergenic |
| TAACAATGGCTTGAACCTCA+AGG | 0.615787 | 6_3:+92999102 | Msa0965540:CDS |
| GGACATATTCTGAACCATGA+AGG | 0.615918 | 6_3:-93000999 | None:intergenic |
| TGGATGGTGCCCCATACTTG+AGG | 0.620867 | 6_3:+93000395 | Msa0965540:CDS |
| CTAGGGAACAAATTGTAGGA+TGG | 0.620947 | 6_3:+93000266 | Msa0965540:intron |
| TGTTCATTGACTCTTGCAAG+AGG | 0.620974 | 6_3:+93001467 | Msa0965540:CDS |
| GATTATACATAAGCAAAGCA+AGG | 0.628971 | 6_3:-93001817 | None:intergenic |
| GGAGGAAAAGCACCACATTG+TGG | 0.629268 | 6_3:-93001796 | None:intergenic |
| AAAGATAGTTCCAACCAACA+AGG | 0.652975 | 6_3:+92999280 | Msa0965540:CDS |
| ATCCACTTTCCTCAAGTATG+GGG | 0.656738 | 6_3:-93000404 | None:intergenic |
| AGCACCACATTGTGGCACTG+AGG | 0.715353 | 6_3:-93001788 | None:intergenic |
| TATACATAAGCAAAGCAAGG+AGG | 0.720761 | 6_3:-93001814 | None:intergenic |
| GATGCCTCAGTGCCACAATG+TGG | 0.766027 | 6_3:+93001784 | Msa0965540:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTGTGTTAAATTTTT+AGG | + | chr6_3:92999449-92999468 | Msa0965540:intron | 10.0% |
| !!! | TATTTATTTTCTTTTATCAT+TGG | - | chr6_3:92999537-92999556 | None:intergenic | 10.0% |
| !! | ATAACTTCAAAATTTATATT+TGG | - | chr6_3:93000206-93000225 | None:intergenic | 10.0% |
| !!! | TTAAATTTTTAGGCTTTATT+TGG | + | chr6_3:92999459-92999478 | Msa0965540:intron | 15.0% |
| !! | ACATATTATTCAAAAGTTTA+TGG | - | chr6_3:93001128-93001147 | None:intergenic | 15.0% |
| !! | ATTTGATTATTTGAAAGTTT+AGG | + | chr6_3:93001175-93001194 | Msa0965540:intron | 15.0% |
| !!! | GTTTTTATTTTTGTTGTTTT+AGG | + | chr6_3:93001443-93001462 | Msa0965540:intron | 15.0% |
| !! | GTATAAGCAATTATCATATA+AGG | + | chr6_3:92999487-92999506 | Msa0965540:intron | 20.0% |
| !! | ATTGAAATAACTTCTACATA+AGG | - | chr6_3:92999513-92999532 | None:intergenic | 20.0% |
| !!! | GTTATGTACGTTTTAAATAA+AGG | - | chr6_3:93000759-93000778 | None:intergenic | 20.0% |
| !!! | TTTAAAACGTACATAACTAA+AGG | + | chr6_3:93000762-93000781 | Msa0965540:intron | 20.0% |
| !! | TTAAAACGTACATAACTAAA+GGG | + | chr6_3:93000763-93000782 | Msa0965540:intron | 20.0% |
| !! | TTTAAAGGAGTGATATTAAT+AGG | + | chr6_3:93000836-93000855 | Msa0965540:intron | 20.0% |
| !!! | TTTTTATATAGTTTTTGGAC+CGG | + | chr6_3:93001288-93001307 | Msa0965540:intron | 20.0% |
| !! | ATGGAAATTATATTACGAAA+AGG | + | chr6_3:93001353-93001372 | Msa0965540:intron | 20.0% |
| !!! | AGATACTTTTTAAAACCATA+TGG | + | chr6_3:93001589-93001608 | Msa0965540:intron | 20.0% |
| !!! | CTCTATTACAAAAAAGTTTT+AGG | - | chr6_3:93001864-93001883 | None:intergenic | 20.0% |
| !!! | TTTCTTAGGTTTGTTAATAA+GGG | + | chr6_3:93001948-93001967 | Msa0965540:three_prime_UTR | 20.0% |
| !! | TTTTCTCAAAGAAGTAACAA+TGG | + | chr6_3:92999088-92999107 | Msa0965540:CDS | 25.0% |
| !!! | TGCTTAATGGTTTATTTTCA+AGG | + | chr6_3:92999215-92999234 | Msa0965540:CDS | 25.0% |
| !!! | GCTTAATGGTTTATTTTCAA+GGG | + | chr6_3:92999216-92999235 | Msa0965540:CDS | 25.0% |
| ! | TTTCTTCAAACCAATTTCAA+TGG | - | chr6_3:92999263-92999282 | None:intergenic | 25.0% |
| !!! | GTTATTTTCACAAGCTATTA+TGG | + | chr6_3:92999570-92999589 | Msa0965540:intron | 25.0% |
| ! | CTTATGATATTATCAGCTTA+TGG | - | chr6_3:92999630-92999649 | None:intergenic | 25.0% |
| ! | AATAGATAAACTCAAACAAG+AGG | - | chr6_3:92999964-92999983 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACATTGTA+CGG | - | chr6_3:93000044-93000063 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAGGTTATTA+TGG | - | chr6_3:93000081-93000100 | None:intergenic | 25.0% |
| !!! | AAGCTATAAGTTGTTTTCAT+AGG | - | chr6_3:93000090-93000109 | None:intergenic | 25.0% |
| ! | GAAGTTATAATCAAATCCTA+TGG | + | chr6_3:93000218-93000237 | Msa0965540:intron | 25.0% |
| ! | GAAGACAAAAATTAAACCAT+AGG | - | chr6_3:93000237-93000256 | None:intergenic | 25.0% |
| !!! | AAAGTGGATCTCAAATTTTT+TGG | + | chr6_3:93000418-93000437 | Msa0965540:CDS | 25.0% |
| !! | ACAACTAAACATCTTTTCTA+GGG | - | chr6_3:93000467-93000486 | None:intergenic | 25.0% |
| !! | AACAACTAAACATCTTTTCT+AGG | - | chr6_3:93000468-93000487 | None:intergenic | 25.0% |
| !! | TAGGTTTAAGATAACAATCT+CGG | + | chr6_3:93000547-93000566 | Msa0965540:intron | 25.0% |
| !!! | TTTTGATGAATGAAAAGTGT+AGG | + | chr6_3:93000913-93000932 | Msa0965540:intron | 25.0% |
| !! | TTTAGGTTCAATTATTTAGC+CGG | - | chr6_3:93001310-93001329 | None:intergenic | 25.0% |
| ! | CATATTGTAATAAACCTTAG+AGG | + | chr6_3:93001618-93001637 | Msa0965540:intron | 25.0% |
| ! | CTTATGTATAATCCTACATA+TGG | + | chr6_3:93001827-93001846 | Msa0965540:three_prime_UTR | 25.0% |
| !!! | GTTTCTTAGGTTTGTTAATA+AGG | + | chr6_3:93001947-93001966 | Msa0965540:three_prime_UTR | 25.0% |
| ! | TTAATGTTAGAGATAGAGAT+TGG | + | chr6_3:93002028-93002047 | Msa0965540:three_prime_UTR | 25.0% |
| TAAAGTTTCCACTACTACAA+TGG | + | chr6_3:92999051-92999070 | Msa0965540:exon | 30.0% | |
| TACTCTTTATGCATGCTTAA+TGG | + | chr6_3:92999202-92999221 | Msa0965540:CDS | 30.0% | |
| !! | TTATTTTCAAGGGCAAAAAG+AGG | + | chr6_3:92999226-92999245 | Msa0965540:CDS | 30.0% |
| ! | TTTTCAGATGCCATTGAAAT+TGG | + | chr6_3:92999250-92999269 | Msa0965540:CDS | 30.0% |
| AAGAAGAAGTCTCAGATATA+TGG | + | chr6_3:92999352-92999371 | Msa0965540:CDS | 30.0% | |
| CAGTAAATCAACAATGAAAG+TGG | - | chr6_3:92999798-92999817 | None:intergenic | 30.0% | |
| AAGAGGATCATTAACACTAT+AGG | - | chr6_3:92999947-92999966 | None:intergenic | 30.0% | |
| TTATTATGGTTGAGAGCTTA+TGG | - | chr6_3:93000067-93000086 | None:intergenic | 30.0% | |
| TTTGTCTTCATTTCTGATCT+AGG | + | chr6_3:93000248-93000267 | Msa0965540:intron | 30.0% | |
| TTGTCTTCATTTCTGATCTA+GGG | + | chr6_3:93000249-93000268 | Msa0965540:intron | 30.0% | |
| TTGAATTCTTCCTGAAAGAA+CGG | - | chr6_3:93000300-93000319 | None:intergenic | 30.0% | |
| TTCTTTCAGGAAGAATTCAA+TGG | + | chr6_3:93000300-93000319 | Msa0965540:CDS | 30.0% | |
| !!! | ATCATTCTTTTGAGATTGAG+TGG | - | chr6_3:93000326-93000345 | None:intergenic | 30.0% |
| !! | TACATAAAGGCATCCAAATT+TGG | - | chr6_3:93000365-93000384 | None:intergenic | 30.0% |
| ! | CCATGCTAACTTTTACATAA+AGG | - | chr6_3:93000378-93000397 | None:intergenic | 30.0% |
| CCTTTATGTAAAAGTTAGCA+TGG | + | chr6_3:93000375-93000394 | Msa0965540:CDS | 30.0% | |
| TATGTAAAAGTTAGCATGGA+TGG | + | chr6_3:93000379-93000398 | Msa0965540:CDS | 30.0% | |
| !!! | CAAATTTTTTGGCACTTACA+AGG | + | chr6_3:93000429-93000448 | Msa0965540:CDS | 30.0% |
| ! | AGGTTTAAGATAACAATCTC+GGG | + | chr6_3:93000548-93000567 | Msa0965540:intron | 30.0% |
| GTTGATATTGTGGAGAATTA+CGG | + | chr6_3:93000583-93000602 | Msa0965540:intron | 30.0% | |
| !! | TAGTACCGACATTAGATTTA+AGG | + | chr6_3:93000637-93000656 | Msa0965540:intron | 30.0% |
| ATTTGAAAACATCTCGATGA+CGG | - | chr6_3:93000685-93000704 | None:intergenic | 30.0% | |
| ACAACACTGATACAATGAAA+CGG | - | chr6_3:93000713-93000732 | None:intergenic | 30.0% | |
| TAAAAATCTCCTTAGCTCAA+TGG | - | chr6_3:93000820-93000839 | None:intergenic | 30.0% | |
| ! | TGAGCTAAGGAGATTTTTAA+AGG | + | chr6_3:93000821-93000840 | Msa0965540:intron | 30.0% |
| ! | ATGAAAAGTGTAGGTCAATT+TGG | + | chr6_3:93000922-93000941 | Msa0965540:intron | 30.0% |
| TTTGTGTGAAAGTAGATTGA+TGG | + | chr6_3:93000972-93000991 | Msa0965540:CDS | 30.0% | |
| ATCACCATCTTTATCTTCAT+AGG | - | chr6_3:93001028-93001047 | None:intergenic | 30.0% | |
| ATGAAGATAAAGATGGTGAT+TGG | + | chr6_3:93001028-93001047 | Msa0965540:CDS | 30.0% | |
| AAAATATGCACTTACTTCCA+TGG | - | chr6_3:93001072-93001091 | None:intergenic | 30.0% | |
| ! | GCAACAACGTTATACATTTT+AGG | - | chr6_3:93001327-93001346 | None:intergenic | 30.0% |
| ATAACGTTGTTGCGAATTAA+TGG | + | chr6_3:93001334-93001353 | Msa0965540:intron | 30.0% | |
| !! | ATGAAAAGTTCTGAAGCAAT+TGG | + | chr6_3:93001499-93001518 | Msa0965540:CDS | 30.0% |
| CTGTCTCAAATATCTCTTAA+AGG | + | chr6_3:93001552-93001571 | Msa0965540:intron | 30.0% | |
| TACAATATGTACTTGCCATA+TGG | - | chr6_3:93001607-93001626 | None:intergenic | 30.0% | |
| TAAACCTTAGAGGTCAAAAT+TGG | + | chr6_3:93001628-93001647 | Msa0965540:intron | 30.0% | |
| !! | AAATCCAATTTTGACCTCTA+AGG | - | chr6_3:93001635-93001654 | None:intergenic | 30.0% |
| GATTATACATAAGCAAAGCA+AGG | - | chr6_3:93001820-93001839 | None:intergenic | 30.0% | |
| TATTCAAAGCCAAGTGTTTA+GGG | - | chr6_3:93001889-93001908 | None:intergenic | 30.0% | |
| !! | ATGCTTGTTGTTGACAATTA+AGG | + | chr6_3:93001925-93001944 | Msa0965540:three_prime_UTR | 30.0% |
| GTTGACAATTAAGGTTTCTT+AGG | + | chr6_3:93001934-93001953 | Msa0965540:three_prime_UTR | 30.0% | |
| AGAACTTTCCATTGTAGTAG+TGG | - | chr6_3:92999062-92999081 | None:intergenic | 35.0% | |
| AGAAGATCATTATCTCTCTC+TGG | - | chr6_3:92999166-92999185 | None:intergenic | 35.0% | |
| AAAGATAGTTCCAACCAACA+AGG | + | chr6_3:92999280-92999299 | Msa0965540:CDS | 35.0% | |
| GACTTCTTCTTCTCATTCAA+AGG | - | chr6_3:92999343-92999362 | None:intergenic | 35.0% | |
| AGCTTATGGAAAATCGCTTA+CGG | - | chr6_3:92999616-92999635 | None:intergenic | 35.0% | |
| !!! | ATGCGCTCTAAGTAGTTTTT+TGG | + | chr6_3:92999738-92999757 | Msa0965540:intron | 35.0% |
| AAGCACTTGTGAGACTATTT+AGG | + | chr6_3:92999989-93000008 | Msa0965540:intron | 35.0% | |
| TGATCTAGGGAACAAATTGT+AGG | + | chr6_3:93000262-93000281 | Msa0965540:intron | 35.0% | |
| GATGATGTAGAAGCCAAATT+TGG | + | chr6_3:93000349-93000368 | Msa0965540:CDS | 35.0% | |
| ACACGCCTTAAATCTAATGT+CGG | - | chr6_3:93000645-93000664 | None:intergenic | 35.0% | |
| GTACATAACTAAAGGGTAGT+TGG | + | chr6_3:93000770-93000789 | Msa0965540:intron | 35.0% | |
| ! | GTAGTTGGTTCATATGCTAA+GGG | + | chr6_3:93000785-93000804 | Msa0965540:intron | 35.0% |
| CATCTTTATCTTCATAGGTG+AGG | - | chr6_3:93001023-93001042 | None:intergenic | 35.0% | |
| CTCACCTATGAAGATAAAGA+TGG | + | chr6_3:93001021-93001040 | Msa0965540:CDS | 35.0% | |
| ! | AGTGCATATTTTGTCTCACA+TGG | + | chr6_3:93001080-93001099 | Msa0965540:intron | 35.0% |
| !! | AGTTCTGAAGCAATTGGATT+AGG | + | chr6_3:93001505-93001524 | Msa0965540:CDS | 35.0% |
| TATACATAAGCAAAGCAAGG+AGG | - | chr6_3:93001817-93001836 | None:intergenic | 35.0% | |
| GACACTATGATTCCATATGT+AGG | - | chr6_3:93001842-93001861 | None:intergenic | 35.0% | |
| CTATTCAAAGCCAAGTGTTT+AGG | - | chr6_3:93001890-93001909 | None:intergenic | 35.0% | |
| TAACAATGGCTTGAACCTCA+AGG | + | chr6_3:92999102-92999121 | Msa0965540:CDS | 40.0% | |
| AAGGCTACTGAGTTAAGACT+TGG | + | chr6_3:92999121-92999140 | Msa0965540:CDS | 40.0% | |
| ! | GAGTTAAGACTTGGTTTACC+TGG | + | chr6_3:92999130-92999149 | Msa0965540:CDS | 40.0% |
| CTAGGGAACAAATTGTAGGA+TGG | + | chr6_3:93000266-93000285 | Msa0965540:intron | 40.0% | |
| TTCTTCCTGAAAGAACGGAT+TGG | - | chr6_3:93000295-93000314 | None:intergenic | 40.0% | |
| ATCCACTTTCCTCAAGTATG+GGG | - | chr6_3:93000407-93000426 | None:intergenic | 40.0% | |
| GATCCACTTTCCTCAAGTAT+GGG | - | chr6_3:93000408-93000427 | None:intergenic | 40.0% | |
| AGATCCACTTTCCTCAAGTA+TGG | - | chr6_3:93000409-93000428 | None:intergenic | 40.0% | |
| ! | TCTCATTTTGCTTGTGCACT+AGG | + | chr6_3:93000528-93000547 | Msa0965540:intron | 40.0% |
| CGTCATGATCGTTGATATTG+TGG | + | chr6_3:93000573-93000592 | Msa0965540:intron | 40.0% | |
| ! | GGTAGTTGGTTCATATGCTA+AGG | + | chr6_3:93000784-93000803 | Msa0965540:intron | 40.0% |
| ! | TGGTTGATTCCATTGAGCTA+AGG | + | chr6_3:93000808-93000827 | Msa0965540:intron | 40.0% |
| !!! | TTTGGCTCTCATGGAGTTTT+TGG | + | chr6_3:93000940-93000959 | Msa0965540:CDS | 40.0% |
| !!! | TCTCATGGAGTTTTTGGTCA+AGG | + | chr6_3:93000946-93000965 | Msa0965540:CDS | 40.0% |
| ! | AGATTGATGGATCTCCTTCA+TGG | + | chr6_3:93000985-93001004 | Msa0965540:CDS | 40.0% |
| GGACATATTCTGAACCATGA+AGG | - | chr6_3:93001002-93001021 | None:intergenic | 40.0% | |
| !! | TGTTCATTGACTCTTGCAAG+AGG | + | chr6_3:93001467-93001486 | Msa0965540:CDS | 40.0% |
| TTGACTCTTGCAAGAGGTTA+AGG | + | chr6_3:93001473-93001492 | Msa0965540:CDS | 40.0% | |
| !! | TTGGTGCTGCATAAATCAGA+TGG | - | chr6_3:93001726-93001745 | None:intergenic | 40.0% |
| ! | AATAGAGTGCCCTAAACACT+TGG | + | chr6_3:93001877-93001896 | Msa0965540:three_prime_UTR | 40.0% |
| ! | GTCTTAACTCAGTAGCCTTG+AGG | - | chr6_3:92999120-92999139 | None:intergenic | 45.0% |
| CACAACAGAACCTTGTTGGT+TGG | - | chr6_3:92999293-92999312 | None:intergenic | 45.0% | |
| CCTTCACAACAGAACCTTGT+TGG | - | chr6_3:92999297-92999316 | None:intergenic | 45.0% | |
| CCAACAAGGTTCTGTTGTGA+AGG | + | chr6_3:92999294-92999313 | Msa0965540:CDS | 45.0% | |
| !! | TTCCTGAAAGAACGGATTGG+TGG | - | chr6_3:93000292-93000311 | None:intergenic | 45.0% |
| AGTGTTGTGTCCGATGTTTG+TGG | + | chr6_3:93000725-93000744 | Msa0965540:intron | 45.0% | |
| GGCATAACAGCCACAAACAT+CGG | - | chr6_3:93000738-93000757 | None:intergenic | 45.0% | |
| ! | GTTGGTTCATATGCTAAGGG+TGG | + | chr6_3:93000788-93000807 | Msa0965540:intron | 45.0% |
| !! | GTAGGTCAATTTGGCTCTCA+TGG | + | chr6_3:93000931-93000950 | Msa0965540:intron | 45.0% |
| GATGGTGATTGGATGCTAGT+TGG | + | chr6_3:93001039-93001058 | Msa0965540:CDS | 45.0% | |
| !! | TGCTAGTTGGTGATGTTCCA+TGG | + | chr6_3:93001052-93001071 | Msa0965540:CDS | 45.0% |
| ! | TTGCACTTTTCCATGGCTCT+TGG | - | chr6_3:93001745-93001764 | None:intergenic | 45.0% |
| ! | GCGACTTTTGCACTTTTCCA+TGG | - | chr6_3:93001752-93001771 | None:intergenic | 45.0% |
| !!! | AAATTTTTTTATATAGTTTT+TGG | + | chr6_3:93001283-93001302 | Msa0965540:intron | 5.0% |
| !! | TAAAAATAAAGAATTTATAT+TGG | + | chr6_3:93001689-93001708 | Msa0965540:intron | 5.0% |
| CTCTCTGGTGATTCAGAACC+AGG | - | chr6_3:92999151-92999170 | None:intergenic | 50.0% | |
| TGCCCCATACTTGAGGAAAG+TGG | + | chr6_3:93000402-93000421 | Msa0965540:CDS | 50.0% | |
| TTATGCAGCACCAAGAGCCA+TGG | + | chr6_3:93001732-93001751 | Msa0965540:intron | 50.0% | |
| !! | GGAGGAAAAGCACCACATTG+TGG | - | chr6_3:93001799-93001818 | None:intergenic | 50.0% |
| GGCCACCAATCCGTTCTTTC+AGG | + | chr6_3:93000287-93000306 | Msa0965540:CDS | 55.0% | |
| TGGATGGTGCCCCATACTTG+AGG | + | chr6_3:93000395-93000414 | Msa0965540:CDS | 55.0% | |
| GATGCCTCAGTGCCACAATG+TGG | + | chr6_3:93001784-93001803 | Msa0965540:three_prime_UTR | 55.0% | |
| AGCACCACATTGTGGCACTG+AGG | - | chr6_3:93001791-93001810 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 92998934 | 93002082 | 92998934 | ID=Msa0965540;Name=Msa0965540 |
| chr6_3 | mRNA | 92998934 | 93002082 | 92998934 | ID=Msa0965540-mRNA-1;Parent=Msa0965540;Name=Msa0965540-mRNA-1;_AED=0.10;_eAED=0.10;_QI=136|1|1|1|1|1|5|305|261 |
| chr6_3 | exon | 92998934 | 92999386 | 92998934 | ID=Msa0965540-mRNA-1:exon:17012;Parent=Msa0965540-mRNA-1 |
| chr6_3 | exon | 93000270 | 93000496 | 93000270 | ID=Msa0965540-mRNA-1:exon:17013;Parent=Msa0965540-mRNA-1 |
| chr6_3 | exon | 93000935 | 93001076 | 93000935 | ID=Msa0965540-mRNA-1:exon:17014;Parent=Msa0965540-mRNA-1 |
| chr6_3 | exon | 93001465 | 93001526 | 93001465 | ID=Msa0965540-mRNA-1:exon:17015;Parent=Msa0965540-mRNA-1 |
| chr6_3 | exon | 93001740 | 93002082 | 93001740 | ID=Msa0965540-mRNA-1:exon:17016;Parent=Msa0965540-mRNA-1 |
| chr6_3 | five_prime_UTR | 92998934 | 92999069 | 92998934 | ID=Msa0965540-mRNA-1:five_prime_utr;Parent=Msa0965540-mRNA-1 |
| chr6_3 | CDS | 92999070 | 92999386 | 92999070 | ID=Msa0965540-mRNA-1:cds;Parent=Msa0965540-mRNA-1 |
| chr6_3 | CDS | 93000270 | 93000496 | 93000270 | ID=Msa0965540-mRNA-1:cds;Parent=Msa0965540-mRNA-1 |
| chr6_3 | CDS | 93000935 | 93001076 | 93000935 | ID=Msa0965540-mRNA-1:cds;Parent=Msa0965540-mRNA-1 |
| chr6_3 | CDS | 93001465 | 93001526 | 93001465 | ID=Msa0965540-mRNA-1:cds;Parent=Msa0965540-mRNA-1 |
| chr6_3 | CDS | 93001740 | 93001777 | 93001740 | ID=Msa0965540-mRNA-1:cds;Parent=Msa0965540-mRNA-1 |
| chr6_3 | three_prime_UTR | 93001778 | 93002082 | 93001778 | ID=Msa0965540-mRNA-1:three_prime_utr;Parent=Msa0965540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
