Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900180 | XP_013453119.1 | 91.188 | 261 | 16 | 2 | 1 | 261 | 1 | 254 | 7.07e-172 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900180 | sp|Q9ZSY8|IAA27_ARATH | 61.189 | 286 | 77 | 9 | 4 | 261 | 26 | 305 | 9.27e-103 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900180 | A0A072UBZ5 | 91.188 | 261 | 16 | 2 | 1 | 261 | 1 | 254 | 3.38e-172 | 484 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0900180 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0900180 | 0.845055 | 5.154695e-59 | -8.615850e-47 |
| Msa0026490 | Msa0900180 | 0.800673 | 1.290974e-48 | -8.615850e-47 |
| Msa0028640 | Msa0900180 | 0.800316 | 1.526133e-48 | -8.615850e-47 |
| Msa0086650 | Msa0900180 | 0.810605 | 1.060686e-50 | -8.615850e-47 |
| Msa0110970 | Msa0900180 | 0.812819 | 3.499796e-51 | -8.615850e-47 |
| Msa0643470 | Msa0900180 | 0.804864 | 1.760599e-49 | -8.615850e-47 |
| Msa0657970 | Msa0900180 | 0.810146 | 1.332781e-50 | -8.615850e-47 |
| Msa0682620 | Msa0900180 | 0.819012 | 1.452209e-52 | -8.615850e-47 |
| Msa0688770 | Msa0900180 | 0.816106 | 6.561129e-52 | -8.615850e-47 |
| Msa0824680 | Msa0900180 | 0.800082 | 1.702991e-48 | -8.615850e-47 |
| Msa0832370 | Msa0900180 | 0.811926 | 5.483207e-51 | -8.615850e-47 |
| Msa0133130 | Msa0900180 | 0.822359 | 2.471633e-53 | -8.615850e-47 |
| Msa0140780 | Msa0900180 | 0.833827 | 4.264196e-56 | -8.615850e-47 |
| Msa0157290 | Msa0900180 | 0.845303 | 4.418993e-59 | -8.615850e-47 |
| Msa0195000 | Msa0900180 | 0.809163 | 2.167577e-50 | -8.615850e-47 |
| Msa0197230 | Msa0900180 | 0.808113 | 3.632382e-50 | -8.615850e-47 |
| Msa0200260 | Msa0900180 | 0.815964 | 7.059516e-52 | -8.615850e-47 |
| Msa0237070 | Msa0900180 | 0.805911 | 1.062261e-49 | -8.615850e-47 |
| Msa0371540 | Msa0900180 | 0.811716 | 6.090650e-51 | -8.615850e-47 |
| Msa0380740 | Msa0900180 | 0.800695 | 1.277268e-48 | -8.615850e-47 |
| Msa0410650 | Msa0900180 | 0.825386 | 4.821770e-54 | -8.615850e-47 |
| Msa0428930 | Msa0900180 | 0.806627 | 7.502609e-50 | -8.615850e-47 |
| Msa0465670 | Msa0900180 | -0.811238 | 7.736366e-51 | -8.615850e-47 |
| Msa0465950 | Msa0900180 | 0.828113 | 1.076665e-54 | -8.615850e-47 |
| Msa0466390 | Msa0900180 | 0.802861 | 4.588404e-49 | -8.615850e-47 |
| Msa0243100 | Msa0900180 | 0.835303 | 1.815089e-56 | -8.615850e-47 |
| Msa0262520 | Msa0900180 | 0.800801 | 1.215545e-48 | -8.615850e-47 |
| Msa0287650 | Msa0900180 | 0.822411 | 2.403607e-53 | -8.615850e-47 |
| Msa0336420 | Msa0900180 | 0.808594 | 2.869169e-50 | -8.615850e-47 |
| Msa0507680 | Msa0900180 | 0.805113 | 1.561441e-49 | -8.615850e-47 |
| Msa0517330 | Msa0900180 | 0.805083 | 1.583857e-49 | -8.615850e-47 |
| Msa0517340 | Msa0900180 | 0.809892 | 1.511329e-50 | -8.615850e-47 |
| Msa0547490 | Msa0900180 | 0.812831 | 3.478097e-51 | -8.615850e-47 |
| Msa0550430 | Msa0900180 | 0.807655 | 4.545499e-50 | -8.615850e-47 |
| Msa0555020 | Msa0900180 | 0.802461 | 5.549843e-49 | -8.615850e-47 |
| Msa0581760 | Msa0900180 | 0.815403 | 9.412732e-52 | -8.615850e-47 |
| Msa0599890 | Msa0900180 | 0.822437 | 2.370536e-53 | -8.615850e-47 |
| Msa0601850 | Msa0900180 | 0.814968 | 1.175660e-51 | -8.615850e-47 |
| Msa0602240 | Msa0900180 | 0.832817 | 7.614217e-56 | -8.615850e-47 |
| Msa0602250 | Msa0900180 | 0.839475 | 1.549550e-57 | -8.615850e-47 |
| Msa0844240 | Msa0900180 | 0.813100 | 3.036683e-51 | -8.615850e-47 |
| Msa0880140 | Msa0900180 | 0.845414 | 4.123625e-59 | -8.615850e-47 |
| Msa0900180 | Msa0944770 | 0.802156 | 6.413376e-49 | -8.615850e-47 |
| Msa0900180 | Msa0965540 | 0.964804 | 8.632598e-124 | -8.615850e-47 |
| Msa0900180 | Msa0968680 | 0.811207 | 7.858048e-51 | -8.615850e-47 |
| Msa0900180 | Msa0981010 | 0.810815 | 9.554558e-51 | -8.615850e-47 |
| Msa0900180 | Msa1004550 | 0.803718 | 3.049329e-49 | -8.615850e-47 |
| Msa0900180 | Msa1007610 | -0.807150 | 5.815980e-50 | -8.615850e-47 |
| Msa0900180 | Msa1009000 | 0.816096 | 6.593190e-52 | -8.615850e-47 |
| Msa0900180 | Msa1044420 | 0.810658 | 1.033004e-50 | -8.615850e-47 |
| Msa0900180 | Msa1075220 | -0.809662 | 1.693933e-50 | -8.615850e-47 |
| Msa0900180 | Msa1077180 | 0.812119 | 4.975587e-51 | -8.615850e-47 |
| Msa0900180 | Msa1085200 | 0.822535 | 2.249412e-53 | -8.615850e-47 |
| Msa0900180 | Msa1098560 | 0.820455 | 6.796273e-53 | -8.615850e-47 |
| Msa0900180 | Msa1133710 | 0.808433 | 3.104343e-50 | -8.615850e-47 |
| Msa0900180 | Msa1162550 | -0.805485 | 1.305140e-49 | -8.615850e-47 |
| Msa0900180 | Msa1178160 | 0.802146 | 6.444266e-49 | -8.615850e-47 |
| Msa0900180 | Msa1183100 | -0.804448 | 2.150200e-49 | -8.615850e-47 |
| Msa0900180 | Msa1217810 | 0.809829 | 1.559242e-50 | -8.615850e-47 |
| Msa0900180 | Msa1222970 | 0.808707 | 2.713065e-50 | -8.615850e-47 |
| Msa0900180 | Msa1228210 | 0.858911 | 5.950131e-63 | -8.615850e-47 |
| Msa0900180 | Msa1242220 | 0.813683 | 2.260491e-51 | -8.615850e-47 |
| Msa0900180 | Msa1242230 | 0.811178 | 7.972483e-51 | -8.615850e-47 |
| Msa0900180 | Msa1264020 | 0.801294 | 9.636507e-49 | -8.615850e-47 |
| Msa0900180 | Msa1265340 | -0.809493 | 1.841472e-50 | -8.615850e-47 |
| Msa0900180 | Msa1271280 | 0.848170 | 7.270800e-60 | -8.615850e-47 |
| Msa0900180 | Msa1271290 | 0.826776 | 2.253200e-54 | -8.615850e-47 |
| Msa0900180 | Msa1271300 | 0.844815 | 5.983118e-59 | -8.615850e-47 |
| Msa0900180 | Msa1278840 | 0.804610 | 1.988747e-49 | -8.615850e-47 |
| Msa0900180 | Msa1283860 | 0.825149 | 5.486709e-54 | -8.615850e-47 |
| Msa0900180 | Msa1293770 | 0.842653 | 2.268078e-58 | -8.615850e-47 |
| Msa0900180 | Msa1308380 | 0.843299 | 1.525841e-58 | -8.615850e-47 |
| Msa0900180 | Msa1322860 | 0.811777 | 5.909315e-51 | -8.615850e-47 |
| Msa0900180 | Msa1322890 | 0.825835 | 3.774325e-54 | -8.615850e-47 |
| Msa0900180 | Msa1324500 | 0.804701 | 1.904012e-49 | -8.615850e-47 |
| Msa0900180 | Msa1324550 | 0.826034 | 3.385256e-54 | -8.615850e-47 |
| Msa0900180 | Msa1327050 | 0.803848 | 2.866044e-49 | -8.615850e-47 |
| Msa0900180 | Msa1363890 | 0.814049 | 1.877592e-51 | -8.615850e-47 |
| Msa0900180 | Msa1367080 | 0.809942 | 1.474700e-50 | -8.615850e-47 |
| Msa0900180 | Msa1374550 | 0.809431 | 1.898923e-50 | -8.615850e-47 |
| Msa0900180 | Msa1423450 | 0.810238 | 1.273302e-50 | -8.615850e-47 |
| Msa0900180 | Msa1425010 | 0.805554 | 1.261967e-49 | -8.615850e-47 |
| Msa0900180 | Msa1464940 | 0.822057 | 2.903947e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900180 | MtrunA17_Chr6g0486121 | 91.188 | 261 | 16 | 2 | 1 | 261 | 1 | 254 | 6.50e-176 | 484 |
| Msa0900180 | MtrunA17_Chr8g0390281 | 63.251 | 283 | 57 | 7 | 14 | 261 | 23 | 293 | 7.76e-112 | 323 |
| Msa0900180 | MtrunA17_Chr8g0366881 | 55.862 | 290 | 93 | 6 | 7 | 261 | 59 | 348 | 2.35e-98 | 291 |
| Msa0900180 | MtrunA17_Chr5g0411501 | 54.895 | 286 | 89 | 7 | 15 | 261 | 51 | 335 | 8.83e-97 | 287 |
| Msa0900180 | MtrunA17_Chr2g0331411 | 51.299 | 308 | 93 | 7 | 10 | 261 | 20 | 326 | 1.37e-90 | 271 |
| Msa0900180 | MtrunA17_Chr5g0428141 | 52.525 | 297 | 93 | 10 | 7 | 261 | 57 | 347 | 4.34e-87 | 263 |
| Msa0900180 | MtrunA17_Chr1g0187921 | 50.973 | 257 | 92 | 6 | 13 | 261 | 6 | 236 | 5.20e-76 | 230 |
| Msa0900180 | MtrunA17_Chr1g0190711 | 49.035 | 259 | 98 | 6 | 15 | 260 | 15 | 252 | 1.10e-71 | 220 |
| Msa0900180 | MtrunA17_Chr1g0184791 | 63.354 | 161 | 54 | 2 | 105 | 261 | 86 | 245 | 5.76e-66 | 205 |
| Msa0900180 | MtrunA17_Chr7g0260641 | 61.783 | 157 | 58 | 1 | 105 | 261 | 96 | 250 | 3.35e-65 | 203 |
| Msa0900180 | MtrunA17_Chr1g0184801 | 42.373 | 236 | 91 | 6 | 15 | 250 | 12 | 202 | 2.27e-52 | 169 |
| Msa0900180 | MtrunA17_Chr7g0260621 | 44.068 | 236 | 88 | 6 | 15 | 250 | 11 | 202 | 2.42e-52 | 169 |
| Msa0900180 | MtrunA17_Chr1g0166011 | 42.437 | 238 | 80 | 8 | 15 | 250 | 1 | 183 | 3.33e-51 | 166 |
| Msa0900180 | MtrunA17_Chr1g0187961 | 42.616 | 237 | 69 | 6 | 13 | 249 | 9 | 178 | 4.00e-50 | 162 |
| Msa0900180 | MtrunA17_Chr1g0183251 | 43.407 | 182 | 70 | 4 | 108 | 256 | 82 | 263 | 1.18e-38 | 136 |
| Msa0900180 | MtrunA17_Chr2g0330951 | 37.652 | 247 | 122 | 9 | 21 | 245 | 18 | 254 | 4.15e-36 | 129 |
| Msa0900180 | MtrunA17_Chr4g0004181 | 50.000 | 150 | 44 | 4 | 106 | 253 | 52 | 172 | 4.10e-34 | 121 |
| Msa0900180 | MtrunA17_Chr2g0332141 | 54.717 | 106 | 38 | 3 | 141 | 244 | 6 | 103 | 9.57e-33 | 116 |
| Msa0900180 | MtrunA17_Chr8g0340731 | 32.721 | 272 | 134 | 7 | 9 | 245 | 3 | 260 | 9.57e-33 | 120 |
| Msa0900180 | MtrunA17_Chr3g0137601 | 31.056 | 161 | 79 | 6 | 94 | 245 | 72 | 209 | 7.99e-19 | 82.4 |
| Msa0900180 | MtrunA17_Chr4g0069561 | 36.879 | 141 | 62 | 5 | 105 | 244 | 68 | 182 | 1.63e-18 | 80.9 |
| Msa0900180 | MtrunA17_Chr7g0270851 | 36.434 | 129 | 64 | 3 | 114 | 242 | 45 | 155 | 7.04e-18 | 78.6 |
| Msa0900180 | MtrunA17_Chr1g0193861 | 34.532 | 139 | 74 | 3 | 104 | 242 | 49 | 170 | 1.42e-16 | 75.5 |
| Msa0900180 | MtrunA17_Chr4g0064131 | 29.452 | 146 | 66 | 3 | 106 | 243 | 90 | 206 | 8.82e-15 | 71.2 |
| Msa0900180 | MtrunA17_Chr1g0209181 | 34.483 | 145 | 73 | 5 | 101 | 242 | 43 | 168 | 3.38e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900180 | AT4G29080.1 | 61.189 | 286 | 77 | 9 | 4 | 261 | 26 | 305 | 9.42e-104 | 304 |
| Msa0900180 | AT2G22670.3 | 50.549 | 273 | 107 | 7 | 15 | 260 | 47 | 318 | 3.05e-83 | 252 |
| Msa0900180 | AT2G22670.1 | 50.549 | 273 | 107 | 7 | 15 | 260 | 47 | 318 | 3.05e-83 | 252 |
| Msa0900180 | AT2G22670.4 | 50.549 | 273 | 107 | 7 | 15 | 260 | 64 | 335 | 4.47e-83 | 252 |
| Msa0900180 | AT5G65670.2 | 50.545 | 275 | 107 | 3 | 15 | 260 | 61 | 335 | 6.15e-82 | 249 |
| Msa0900180 | AT5G65670.1 | 50.181 | 277 | 107 | 4 | 15 | 260 | 61 | 337 | 4.97e-80 | 244 |
| Msa0900180 | AT2G22670.5 | 49.817 | 273 | 107 | 8 | 15 | 260 | 47 | 316 | 7.83e-80 | 243 |
| Msa0900180 | AT2G22670.2 | 49.817 | 273 | 107 | 8 | 15 | 260 | 47 | 316 | 7.83e-80 | 243 |
| Msa0900180 | AT3G04730.1 | 48.855 | 262 | 92 | 7 | 15 | 261 | 2 | 236 | 3.02e-75 | 229 |
| Msa0900180 | AT4G14550.1 | 50.397 | 252 | 96 | 7 | 15 | 261 | 1 | 228 | 6.76e-74 | 225 |
| Msa0900180 | AT3G23050.1 | 49.425 | 261 | 95 | 8 | 15 | 261 | 6 | 243 | 5.44e-72 | 221 |
| Msa0900180 | AT1G04250.1 | 46.457 | 254 | 96 | 8 | 15 | 260 | 7 | 228 | 2.31e-69 | 214 |
| Msa0900180 | AT4G14550.2 | 48.548 | 241 | 95 | 6 | 15 | 250 | 1 | 217 | 1.50e-66 | 206 |
| Msa0900180 | AT4G14550.3 | 46.119 | 219 | 89 | 7 | 15 | 228 | 1 | 195 | 2.93e-53 | 171 |
| Msa0900180 | AT3G23050.2 | 45.175 | 228 | 89 | 7 | 15 | 229 | 6 | 210 | 1.23e-51 | 167 |
| Msa0900180 | AT1G04240.1 | 44.068 | 236 | 78 | 8 | 15 | 250 | 5 | 186 | 1.70e-49 | 161 |
| Msa0900180 | AT1G04240.2 | 42.742 | 248 | 88 | 8 | 3 | 250 | 93 | 286 | 1.36e-48 | 162 |
| Msa0900180 | AT5G43700.1 | 39.831 | 236 | 78 | 6 | 15 | 250 | 11 | 182 | 8.61e-46 | 152 |
| Msa0900180 | AT3G23030.1 | 41.350 | 237 | 66 | 7 | 13 | 249 | 7 | 170 | 4.89e-42 | 142 |
| Msa0900180 | AT1G52830.1 | 38.750 | 240 | 91 | 9 | 11 | 250 | 2 | 185 | 1.58e-41 | 141 |
| Msa0900180 | AT3G15540.1 | 40.244 | 246 | 91 | 9 | 14 | 256 | 5 | 197 | 2.24e-41 | 141 |
| Msa0900180 | AT3G23030.2 | 41.350 | 237 | 66 | 7 | 13 | 249 | 94 | 257 | 4.01e-41 | 142 |
| Msa0900180 | AT4G14560.1 | 41.702 | 235 | 63 | 7 | 12 | 246 | 4 | 164 | 1.17e-39 | 135 |
| Msa0900180 | AT4G28640.1 | 44.512 | 164 | 71 | 4 | 103 | 250 | 83 | 242 | 2.93e-37 | 132 |
| Msa0900180 | AT1G04550.2 | 44.633 | 177 | 66 | 6 | 108 | 261 | 69 | 236 | 3.09e-37 | 131 |
| Msa0900180 | AT2G33310.3 | 45.562 | 169 | 64 | 5 | 108 | 255 | 75 | 236 | 5.55e-37 | 131 |
| Msa0900180 | AT2G33310.1 | 45.562 | 169 | 64 | 5 | 108 | 255 | 75 | 236 | 5.55e-37 | 131 |
| Msa0900180 | AT2G33310.2 | 45.562 | 169 | 64 | 5 | 108 | 255 | 76 | 237 | 5.94e-37 | 131 |
| Msa0900180 | AT4G28640.3 | 44.444 | 162 | 70 | 4 | 103 | 248 | 83 | 240 | 6.55e-37 | 131 |
| Msa0900180 | AT3G16500.1 | 36.863 | 255 | 118 | 9 | 7 | 245 | 25 | 252 | 5.73e-36 | 129 |
| Msa0900180 | AT3G16500.2 | 36.863 | 255 | 118 | 9 | 7 | 245 | 25 | 252 | 6.88e-36 | 129 |
| Msa0900180 | AT1G15580.1 | 34.764 | 233 | 74 | 4 | 12 | 244 | 5 | 159 | 8.60e-36 | 125 |
| Msa0900180 | AT4G28640.2 | 45.399 | 163 | 67 | 5 | 103 | 248 | 83 | 240 | 1.05e-35 | 129 |
| Msa0900180 | AT1G04100.1 | 36.994 | 173 | 80 | 4 | 105 | 250 | 90 | 260 | 3.73e-31 | 116 |
| Msa0900180 | AT1G51950.1 | 40.588 | 170 | 76 | 4 | 97 | 245 | 85 | 250 | 5.38e-31 | 116 |
| Msa0900180 | AT4G14550.4 | 41.279 | 172 | 74 | 5 | 15 | 181 | 1 | 150 | 5.07e-30 | 111 |
| Msa0900180 | AT3G23050.3 | 40.437 | 183 | 75 | 6 | 15 | 184 | 6 | 167 | 2.20e-29 | 109 |
| Msa0900180 | AT5G25890.1 | 37.500 | 144 | 68 | 3 | 109 | 252 | 49 | 170 | 3.53e-28 | 106 |
| Msa0900180 | AT3G17600.1 | 37.857 | 140 | 63 | 4 | 103 | 242 | 39 | 154 | 3.00e-22 | 90.5 |
| Msa0900180 | AT3G62100.1 | 38.462 | 104 | 49 | 1 | 140 | 243 | 81 | 169 | 1.04e-18 | 81.3 |
| Msa0900180 | AT2G46990.1 | 37.143 | 105 | 51 | 1 | 140 | 244 | 83 | 172 | 1.99e-18 | 80.9 |
| Msa0900180 | AT4G32280.1 | 25.366 | 205 | 93 | 7 | 86 | 257 | 72 | 249 | 5.74e-15 | 72.8 |
| Msa0900180 | AT4G32280.2 | 32.759 | 116 | 52 | 3 | 142 | 257 | 118 | 207 | 3.35e-14 | 70.1 |
| Msa0900180 | AT1G15050.2 | 33.582 | 134 | 70 | 4 | 115 | 247 | 35 | 150 | 9.13e-14 | 67.4 |
| Msa0900180 | AT3G62100.2 | 37.778 | 90 | 41 | 1 | 140 | 229 | 81 | 155 | 1.67e-13 | 67.0 |
| Msa0900180 | AT2G46990.2 | 37.778 | 90 | 41 | 1 | 140 | 229 | 83 | 157 | 1.70e-13 | 67.0 |
| Msa0900180 | AT1G15050.1 | 33.582 | 134 | 70 | 4 | 115 | 247 | 67 | 182 | 1.86e-13 | 67.4 |
| Msa0900180 | AT2G01200.2 | 34.711 | 121 | 63 | 2 | 127 | 247 | 84 | 188 | 4.58e-13 | 66.6 |
| Msa0900180 | AT2G01200.1 | 34.711 | 121 | 63 | 2 | 127 | 247 | 84 | 188 | 4.58e-13 | 66.6 |
Find 64 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATAAAGGCATCCAAATT+TGG | 0.170065 | 6_1:+95601039 | None:intergenic |
| GTTTCTTAGGTTTGTTAATA+AGG | 0.180337 | 6_1:-95599453 | Msa0900180:three_prime_UTR |
| TACTCTTTATGCATGCTTAA+TGG | 0.190958 | 6_1:-95602153 | Msa0900180:CDS |
| ATGCTTGTTGTTGACAATTA+AGG | 0.211903 | 6_1:-95599475 | Msa0900180:three_prime_UTR |
| AGATCCACTTTCCTCAAGTA+TGG | 0.227669 | 6_1:+95600995 | None:intergenic |
| GTTGACAATTAAGGTTTCTT+AGG | 0.251284 | 6_1:-95599466 | Msa0900180:three_prime_UTR |
| CTATTCAAAGCCAAGTGTTT+AGG | 0.252784 | 6_1:+95599513 | None:intergenic |
| GGCCACCAATCCGTTCTTTC+AGG | 0.268848 | 6_1:-95601114 | Msa0900180:CDS |
| GATGATGTAGAAGCCAAATT+TGG | 0.307716 | 6_1:-95601052 | Msa0900180:CDS |
| TATTCAAAGCCAAGTGTTTA+GGG | 0.308933 | 6_1:+95599514 | None:intergenic |
| ATGAAAAGTGTAGGTCAATT+TGG | 0.319033 | 6_1:-95600478 | Msa0900180:intron |
| TTGACTCTTGCAAGAGGTTA+AGG | 0.334728 | 6_1:-95599927 | Msa0900180:CDS |
| AGTTCTGAAGCAATTGGATT+AGG | 0.360095 | 6_1:-95599895 | Msa0900180:intron |
| CTTATGTATAATCCTACATA+TGG | 0.369542 | 6_1:-95599573 | Msa0900180:three_prime_UTR |
| TTTCTTAGGTTTGTTAATAA+GGG | 0.374956 | 6_1:-95599452 | Msa0900180:three_prime_UTR |
| TTTGTGTGAAAGTAGATTGA+TGG | 0.380197 | 6_1:-95600428 | Msa0900180:CDS |
| CCTTCACAACAGAACCTTGT+TGG | 0.383043 | 6_1:+95602061 | None:intergenic |
| ATGAAAAGTTCTGAAGCAAT+TGG | 0.388635 | 6_1:-95599901 | Msa0900180:CDS |
| AAGAAGAAGTCTCAGATATA+TGG | 0.397635 | 6_1:-95602003 | Msa0900180:CDS |
| CACAACAGAACCTTGTTGGT+TGG | 0.401071 | 6_1:+95602065 | None:intergenic |
| ATCACCATCTTTATCTTCAT+AGG | 0.403740 | 6_1:+95600375 | None:intergenic |
| TTAATGTTAGAGATAGAGAT+TGG | 0.415512 | 6_1:-95599372 | Msa0900180:three_prime_UTR |
| TGATCTAGGGAACAAATTGT+AGG | 0.417413 | 6_1:-95601139 | Msa0900180:intron |
| TTTCTTCAAACCAATTTCAA+TGG | 0.423741 | 6_1:+95602095 | None:intergenic |
| CTCTCTGGTGATTCAGAACC+AGG | 0.434581 | 6_1:+95602207 | None:intergenic |
| AGATTGATGGATCTCCTTCA+TGG | 0.440946 | 6_1:-95600415 | Msa0900180:CDS |
| GTAGGTCAATTTGGCTCTCA+TGG | 0.457514 | 6_1:-95600469 | Msa0900180:intron |
| GACTTCTTCTTCTCATTCAA+AGG | 0.481249 | 6_1:+95602015 | None:intergenic |
| TTCTTTCAGGAAGAATTCAA+TGG | 0.488415 | 6_1:-95601101 | Msa0900180:CDS |
| AGAAGATCATTATCTCTCTC+TGG | 0.489102 | 6_1:+95602192 | None:intergenic |
| TAAAGTTTCCACTACTACAA+TGG | 0.489709 | 6_1:-95602304 | Msa0900180:exon |
| ATGAAGATAAAGATGGTGAT+TGG | 0.490100 | 6_1:-95600372 | Msa0900180:CDS |
| TATGTAAAAGTTAGCATGGA+TGG | 0.496315 | 6_1:-95601022 | Msa0900180:CDS |
| GAGTTAAGACTTGGTTTACC+TGG | 0.509603 | 6_1:-95602225 | Msa0900180:CDS |
| TTGAATTCTTCCTGAAAGAA+CGG | 0.519997 | 6_1:+95601104 | None:intergenic |
| AAAATATGCACTTACTTCCA+TGG | 0.525031 | 6_1:+95600331 | None:intergenic |
| AATATAGTGCCCTAAACACT+TGG | 0.526724 | 6_1:-95599523 | Msa0900180:three_prime_UTR |
| AGAACTTTCCATTGTAGTAG+TGG | 0.527264 | 6_1:+95602296 | None:intergenic |
| GATCCACTTTCCTCAAGTAT+GGG | 0.530733 | 6_1:+95600996 | None:intergenic |
| TTCCTGAAAGAACGGATTGG+TGG | 0.533390 | 6_1:+95601112 | None:intergenic |
| TGCTAGTTGGTGATGTTCCA+TGG | 0.551199 | 6_1:-95600348 | Msa0900180:CDS |
| AAGGCTACTGAGTTAAGACT+TGG | 0.551451 | 6_1:-95602234 | Msa0900180:CDS |
| CCTTTATGTAAAAGTTAGCA+TGG | 0.552884 | 6_1:-95601026 | Msa0900180:CDS |
| GACACTATGATTCCATATGT+AGG | 0.572589 | 6_1:+95599561 | None:intergenic |
| TTCTTCCTGAAAGAACGGAT+TGG | 0.577749 | 6_1:+95601109 | None:intergenic |
| CTCACCTATGAAGATAAAGA+TGG | 0.579438 | 6_1:-95600379 | Msa0900180:CDS |
| TGCCCCATACTTGAGGAAAG+TGG | 0.579458 | 6_1:-95600999 | Msa0900180:CDS |
| TTATGCAGCACCAAGAGCCA+TGG | 0.585701 | 6_1:-95599668 | Msa0900180:intron |
| CCAACAAGGTTCTGTTGTGA+AGG | 0.586707 | 6_1:-95602061 | Msa0900180:CDS |
| GTCTTAACTCAGTAGCCTTG+AGG | 0.600451 | 6_1:+95602238 | None:intergenic |
| GATGGTGATTGGATGCTAGT+TGG | 0.601437 | 6_1:-95600361 | Msa0900180:CDS |
| CATCTTTATCTTCATAGGTG+AGG | 0.607712 | 6_1:+95600380 | None:intergenic |
| TAACAATGGCTTGAACCTCA+AGG | 0.615787 | 6_1:-95602253 | Msa0900180:CDS |
| GGACATATTCTGAACCATGA+AGG | 0.615918 | 6_1:+95600401 | None:intergenic |
| TGGATGGTGCCCCATACTTG+AGG | 0.620867 | 6_1:-95601006 | Msa0900180:CDS |
| CTAGGGAACAAATTGTAGGA+TGG | 0.620947 | 6_1:-95601135 | Msa0900180:intron |
| TGTTCATTGACTCTTGCAAG+AGG | 0.620974 | 6_1:-95599933 | Msa0900180:CDS |
| GATTATACATAAGCAAAGCA+AGG | 0.628971 | 6_1:+95599583 | None:intergenic |
| GGAGGAAAAGCACCACATTG+TGG | 0.629268 | 6_1:+95599604 | None:intergenic |
| AAAGATAGTTCCAACCAACA+AGG | 0.652975 | 6_1:-95602075 | Msa0900180:CDS |
| ATCCACTTTCCTCAAGTATG+GGG | 0.656738 | 6_1:+95600997 | None:intergenic |
| AGCACCACATTGTGGCACTG+AGG | 0.715353 | 6_1:+95599612 | None:intergenic |
| TATACATAAGCAAAGCAAGG+AGG | 0.720761 | 6_1:+95599586 | None:intergenic |
| GATGCCTCAGTGCCACAATG+TGG | 0.766027 | 6_1:-95599616 | Msa0900180:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTTTCTTTTATCAT+TGG | + | chr6_1:95599929-95599948 | None:intergenic | 10.0% |
| !! | ATAACTTCAAAATTTATATT+TGG | + | chr6_1:95600552-95600571 | None:intergenic | 10.0% |
| !!! | AAATTTTGTGTTAAATTTCT+AGG | - | chr6_1:95599841-95599860 | Msa0900180:intron | 15.0% |
| !! | ACATATTATTCAAAAGTTTA+TGG | + | chr6_1:95601475-95601494 | None:intergenic | 15.0% |
| !! | ATTTGATTATTTGAAAGTTT+AGG | - | chr6_1:95601522-95601541 | Msa0900180:intron | 15.0% |
| !!! | GTTTTTATTTTTGTTGTTTT+AGG | - | chr6_1:95601790-95601809 | Msa0900180:intron | 15.0% |
| !!! | CTATATTACAAAAAAGTTTT+AGG | + | chr6_1:95602211-95602230 | None:intergenic | 15.0% |
| !!! | TTAAATTTCTAGGCTTTATT+TGG | - | chr6_1:95599851-95599870 | Msa0900180:intron | 20.0% |
| !! | GTATAAGCAATTATCATATA+AGG | - | chr6_1:95599879-95599898 | Msa0900180:intron | 20.0% |
| !! | ATTGAAATAACTTCTACATA+AGG | + | chr6_1:95599905-95599924 | None:intergenic | 20.0% |
| !!! | TTGTTTTCATAGGTTATTAT+GGG | + | chr6_1:95600426-95600445 | None:intergenic | 20.0% |
| !!! | GTTATGTACGTTTTAAATAA+AGG | + | chr6_1:95601106-95601125 | None:intergenic | 20.0% |
| !!! | TTTAAAACGTACATAACTAA+AGG | - | chr6_1:95601109-95601128 | Msa0900180:CDS | 20.0% |
| !! | TTAAAACGTACATAACTAAA+GGG | - | chr6_1:95601110-95601129 | Msa0900180:CDS | 20.0% |
| !! | TTTAAAGGAGTGATATTAAT+AGG | - | chr6_1:95601183-95601202 | Msa0900180:intron | 20.0% |
| !!! | TTTTTATATAGTTTTTGGAC+CGG | - | chr6_1:95601635-95601654 | Msa0900180:intron | 20.0% |
| !! | ATGGAAATTATATTACGAAA+AGG | - | chr6_1:95601700-95601719 | Msa0900180:intron | 20.0% |
| !!! | AGATACTTTTTAAAACCATA+TGG | - | chr6_1:95601936-95601955 | Msa0900180:intron | 20.0% |
| !!! | TTTCTTAGGTTTGTTAATAA+GGG | - | chr6_1:95602295-95602314 | Msa0900180:exon | 20.0% |
| !! | TTTTCTCAAAGAAGTAACAA+TGG | - | chr6_1:95599480-95599499 | Msa0900180:three_prime_UTR | 25.0% |
| !!! | TGCTTAATGGTTTATTTTCA+AGG | - | chr6_1:95599607-95599626 | Msa0900180:three_prime_UTR | 25.0% |
| !!! | GCTTAATGGTTTATTTTCAA+GGG | - | chr6_1:95599608-95599627 | Msa0900180:three_prime_UTR | 25.0% |
| ! | TTTCTTCAAACCAATTTCAA+TGG | + | chr6_1:95599655-95599674 | None:intergenic | 25.0% |
| !!! | GTTATTTTCACAAGCTATTA+TGG | - | chr6_1:95599962-95599981 | Msa0900180:intron | 25.0% |
| ! | AATAGATAAACTCAAACAAG+AGG | + | chr6_1:95600312-95600331 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACATTGTA+CGG | + | chr6_1:95600392-95600411 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAGGTTATTA+TGG | + | chr6_1:95600427-95600446 | None:intergenic | 25.0% |
| !!! | AAGCTATAAGTTGTTTTCAT+AGG | + | chr6_1:95600436-95600455 | None:intergenic | 25.0% |
| ! | GAAGTTATAATCAAATCCTA+TGG | - | chr6_1:95600564-95600583 | Msa0900180:intron | 25.0% |
| ! | GAAGACAAAAATTAAACCAT+AGG | + | chr6_1:95600583-95600602 | None:intergenic | 25.0% |
| !!! | AAAGTGGATCTCAAATTTTT+TGG | - | chr6_1:95600764-95600783 | Msa0900180:intron | 25.0% |
| !! | ACAACTAAACATCTTTTCTA+GGG | + | chr6_1:95600813-95600832 | None:intergenic | 25.0% |
| !! | AACAACTAAACATCTTTTCT+AGG | + | chr6_1:95600814-95600833 | None:intergenic | 25.0% |
| !! | TAGGTTTAAGATAACAATCT+CGG | - | chr6_1:95600894-95600913 | Msa0900180:intron | 25.0% |
| !!! | TTTTGATGAATGAAAAGTGT+AGG | - | chr6_1:95601260-95601279 | Msa0900180:intron | 25.0% |
| !! | TTTAGGTTCAATTATTTAGC+CGG | + | chr6_1:95601657-95601676 | None:intergenic | 25.0% |
| !! | GCAATAACGTTATACATTTT+AGG | + | chr6_1:95601674-95601693 | None:intergenic | 25.0% |
| ! | ATAACGTTATTGCGAATTAA+TGG | - | chr6_1:95601681-95601700 | Msa0900180:intron | 25.0% |
| ! | CATATTGTAATAAACCTTAG+AGG | - | chr6_1:95601965-95601984 | Msa0900180:intron | 25.0% |
| ! | CTTATGTATAATCCTACATA+TGG | - | chr6_1:95602174-95602193 | Msa0900180:CDS | 25.0% |
| !!! | GTTTCTTAGGTTTGTTAATA+AGG | - | chr6_1:95602294-95602313 | Msa0900180:exon | 25.0% |
| ! | TTAATGTTAGAGATAGAGAT+TGG | - | chr6_1:95602375-95602394 | Msa0900180:five_prime_UTR | 25.0% |
| TAAAGTTTCCACTACTACAA+TGG | - | chr6_1:95599443-95599462 | Msa0900180:three_prime_UTR | 30.0% | |
| TACTCTTTATGCATGCTTAA+TGG | - | chr6_1:95599594-95599613 | Msa0900180:three_prime_UTR | 30.0% | |
| !! | TTATTTTCAAGGGCAAAAAG+AGG | - | chr6_1:95599618-95599637 | Msa0900180:three_prime_UTR | 30.0% |
| ! | TTTTCAGATGCCATTGAAAT+TGG | - | chr6_1:95599642-95599661 | Msa0900180:exon | 30.0% |
| AAGAAGAAGTCTCAGATATA+TGG | - | chr6_1:95599744-95599763 | Msa0900180:intron | 30.0% | |
| GAGTTTATGAAAATCGCTTA+CGG | + | chr6_1:95600008-95600027 | None:intergenic | 30.0% | |
| CAGTAAATCAACAATGAAAG+TGG | + | chr6_1:95600146-95600165 | None:intergenic | 30.0% | |
| AAGAGGATCATTAACACTAT+AGG | + | chr6_1:95600295-95600314 | None:intergenic | 30.0% | |
| TTTGTCTTCATTTCTGATCT+AGG | - | chr6_1:95600594-95600613 | Msa0900180:intron | 30.0% | |
| TTGTCTTCATTTCTGATCTA+GGG | - | chr6_1:95600595-95600614 | Msa0900180:intron | 30.0% | |
| TTGAATTCTTCCTGAAAGAA+CGG | + | chr6_1:95600646-95600665 | None:intergenic | 30.0% | |
| TTCTTTCAGGAAGAATTCAA+TGG | - | chr6_1:95600646-95600665 | Msa0900180:intron | 30.0% | |
| !!! | ATCATTCTTTTGAGATTGAG+TGG | + | chr6_1:95600672-95600691 | None:intergenic | 30.0% |
| !! | TACATAAAGGCATCCAAATT+TGG | + | chr6_1:95600711-95600730 | None:intergenic | 30.0% |
| ! | CCATGCTAACTTTTACATAA+AGG | + | chr6_1:95600724-95600743 | None:intergenic | 30.0% |
| CCTTTATGTAAAAGTTAGCA+TGG | - | chr6_1:95600721-95600740 | Msa0900180:intron | 30.0% | |
| TATGTAAAAGTTAGCATGGA+TGG | - | chr6_1:95600725-95600744 | Msa0900180:intron | 30.0% | |
| !!! | CAAATTTTTTGGCACTTACA+AGG | - | chr6_1:95600775-95600794 | Msa0900180:intron | 30.0% |
| ! | AGGTTTAAGATAACAATCTC+GGG | - | chr6_1:95600895-95600914 | Msa0900180:intron | 30.0% |
| GTTGATATTGTGGAGAATTA+CGG | - | chr6_1:95600930-95600949 | Msa0900180:CDS | 30.0% | |
| !! | TAGTACCGACTTTAGATTTA+AGG | - | chr6_1:95600984-95601003 | Msa0900180:CDS | 30.0% |
| ATTTGAAAACATCTCGATGA+CGG | + | chr6_1:95601032-95601051 | None:intergenic | 30.0% | |
| ACAACACTGATACAATGAAA+CGG | + | chr6_1:95601060-95601079 | None:intergenic | 30.0% | |
| TAAAAATCTCCTTAGCTCAA+TGG | + | chr6_1:95601167-95601186 | None:intergenic | 30.0% | |
| ! | TGAGCTAAGGAGATTTTTAA+AGG | - | chr6_1:95601168-95601187 | Msa0900180:intron | 30.0% |
| ! | ATGAAAAGTGTAGGTCAATT+TGG | - | chr6_1:95601269-95601288 | Msa0900180:intron | 30.0% |
| TTTGTGTGAAAGTAGATTGA+TGG | - | chr6_1:95601319-95601338 | Msa0900180:intron | 30.0% | |
| ATCACCATCTTTATCTTCAT+AGG | + | chr6_1:95601375-95601394 | None:intergenic | 30.0% | |
| ATGAAGATAAAGATGGTGAT+TGG | - | chr6_1:95601375-95601394 | Msa0900180:intron | 30.0% | |
| AAAATATGCACTTACTTCCA+TGG | + | chr6_1:95601419-95601438 | None:intergenic | 30.0% | |
| !! | ATGAAAAGTTCTGAAGCAAT+TGG | - | chr6_1:95601846-95601865 | Msa0900180:intron | 30.0% |
| CTGTCTCAAATATCTCTTAA+AGG | - | chr6_1:95601899-95601918 | Msa0900180:intron | 30.0% | |
| TACAATATGTACTTGCCATA+TGG | + | chr6_1:95601954-95601973 | None:intergenic | 30.0% | |
| TAAACCTTAGAGGTCAAAAT+TGG | - | chr6_1:95601975-95601994 | Msa0900180:intron | 30.0% | |
| !! | AAATCCAATTTTGACCTCTA+AGG | + | chr6_1:95601982-95602001 | None:intergenic | 30.0% |
| GATTATACATAAGCAAAGCA+AGG | + | chr6_1:95602167-95602186 | None:intergenic | 30.0% | |
| TATTCAAAGCCAAGTGTTTA+GGG | + | chr6_1:95602236-95602255 | None:intergenic | 30.0% | |
| !! | ATGCTTGTTGTTGACAATTA+AGG | - | chr6_1:95602272-95602291 | Msa0900180:CDS | 30.0% |
| GTTGACAATTAAGGTTTCTT+AGG | - | chr6_1:95602281-95602300 | Msa0900180:CDS | 30.0% | |
| AGAACTTTCCATTGTAGTAG+TGG | + | chr6_1:95599454-95599473 | None:intergenic | 35.0% | |
| AGAAGATCATTATCTCTCTC+TGG | + | chr6_1:95599558-95599577 | None:intergenic | 35.0% | |
| AAAGATAGTTCCAACCAACA+AGG | - | chr6_1:95599672-95599691 | Msa0900180:intron | 35.0% | |
| GACTTCTTCTTCTCATTCAA+AGG | + | chr6_1:95599735-95599754 | None:intergenic | 35.0% | |
| AAGCACTTGTGAGACTATTT+AGG | - | chr6_1:95600337-95600356 | Msa0900180:intron | 35.0% | |
| TGATCTAGGGAACAAATTGT+AGG | - | chr6_1:95600608-95600627 | Msa0900180:intron | 35.0% | |
| GATGATGTAGAAGCCAAATT+TGG | - | chr6_1:95600695-95600714 | Msa0900180:intron | 35.0% | |
| ! | ACACGCCTTAAATCTAAAGT+CGG | + | chr6_1:95600992-95601011 | None:intergenic | 35.0% |
| GTACATAACTAAAGGGTAGT+TGG | - | chr6_1:95601117-95601136 | Msa0900180:CDS | 35.0% | |
| ! | GTAGTTGGTTCATATGCTAA+GGG | - | chr6_1:95601132-95601151 | Msa0900180:CDS | 35.0% |
| ! | TAGTTGATTCCATTGAGCTA+AGG | - | chr6_1:95601155-95601174 | Msa0900180:intron | 35.0% |
| CATCTTTATCTTCATAGGTG+AGG | + | chr6_1:95601370-95601389 | None:intergenic | 35.0% | |
| CTCACCTATGAAGATAAAGA+TGG | - | chr6_1:95601368-95601387 | Msa0900180:intron | 35.0% | |
| ! | AGTGCATATTTTGTCTCACA+TGG | - | chr6_1:95601427-95601446 | Msa0900180:intron | 35.0% |
| !! | AGTTCTGAAGCAATTGGATT+AGG | - | chr6_1:95601852-95601871 | Msa0900180:intron | 35.0% |
| TATACATAAGCAAAGCAAGG+AGG | + | chr6_1:95602164-95602183 | None:intergenic | 35.0% | |
| GACACTATGATTCCATATGT+AGG | + | chr6_1:95602189-95602208 | None:intergenic | 35.0% | |
| AATATAGTGCCCTAAACACT+TGG | - | chr6_1:95602224-95602243 | Msa0900180:CDS | 35.0% | |
| CTATTCAAAGCCAAGTGTTT+AGG | + | chr6_1:95602237-95602256 | None:intergenic | 35.0% | |
| TAACAATGGCTTGAACCTCA+AGG | - | chr6_1:95599494-95599513 | Msa0900180:three_prime_UTR | 40.0% | |
| AAGGCTACTGAGTTAAGACT+TGG | - | chr6_1:95599513-95599532 | Msa0900180:three_prime_UTR | 40.0% | |
| ! | GAGTTAAGACTTGGTTTACC+TGG | - | chr6_1:95599522-95599541 | Msa0900180:three_prime_UTR | 40.0% |
| GGTTATTATGGGAGAGCTTA+TGG | + | chr6_1:95600415-95600434 | None:intergenic | 40.0% | |
| CTAGGGAACAAATTGTAGGA+TGG | - | chr6_1:95600612-95600631 | Msa0900180:intron | 40.0% | |
| TTCTTCCTGAAAGAACGGAT+TGG | + | chr6_1:95600641-95600660 | None:intergenic | 40.0% | |
| ATCCACTTTCCTCAAGTATG+GGG | + | chr6_1:95600753-95600772 | None:intergenic | 40.0% | |
| GATCCACTTTCCTCAAGTAT+GGG | + | chr6_1:95600754-95600773 | None:intergenic | 40.0% | |
| AGATCCACTTTCCTCAAGTA+TGG | + | chr6_1:95600755-95600774 | None:intergenic | 40.0% | |
| ! | TCTCATTTTGCTTGTGCACT+AGG | - | chr6_1:95600875-95600894 | Msa0900180:intron | 40.0% |
| CGTCATGATCGTTGATATTG+TGG | - | chr6_1:95600920-95600939 | Msa0900180:intron | 40.0% | |
| TGGAGAATTACGGTAAAACG+CGG | - | chr6_1:95600940-95600959 | Msa0900180:CDS | 40.0% | |
| ! | GGTAGTTGGTTCATATGCTA+AGG | - | chr6_1:95601131-95601150 | Msa0900180:CDS | 40.0% |
| !!! | TTTGGCTCTCATGGAGTTTT+TGG | - | chr6_1:95601287-95601306 | Msa0900180:intron | 40.0% |
| !!! | TCTCATGGAGTTTTTGGTCA+AGG | - | chr6_1:95601293-95601312 | Msa0900180:intron | 40.0% |
| ! | AGATTGATGGATCTCCTTCA+TGG | - | chr6_1:95601332-95601351 | Msa0900180:intron | 40.0% |
| GGACATATTCTGAACCATGA+AGG | + | chr6_1:95601349-95601368 | None:intergenic | 40.0% | |
| !! | TGTTCATTGACTCTTGCAAG+AGG | - | chr6_1:95601814-95601833 | Msa0900180:intron | 40.0% |
| TTGACTCTTGCAAGAGGTTA+AGG | - | chr6_1:95601820-95601839 | Msa0900180:intron | 40.0% | |
| !! | TTGGTGCTGCATAAATCAGA+TGG | + | chr6_1:95602073-95602092 | None:intergenic | 40.0% |
| ! | GTCTTAACTCAGTAGCCTTG+AGG | + | chr6_1:95599512-95599531 | None:intergenic | 45.0% |
| CACAACAGAACCTTGTTGGT+TGG | + | chr6_1:95599685-95599704 | None:intergenic | 45.0% | |
| CCTTCACAACAGAACCTTGT+TGG | + | chr6_1:95599689-95599708 | None:intergenic | 45.0% | |
| CCAACAAGGTTCTGTTGTGA+AGG | - | chr6_1:95599686-95599705 | Msa0900180:intron | 45.0% | |
| !! | TTCCTGAAAGAACGGATTGG+TGG | + | chr6_1:95600638-95600657 | None:intergenic | 45.0% |
| AGTGTTGTGTCCGATGTTTG+TGG | - | chr6_1:95601072-95601091 | Msa0900180:CDS | 45.0% | |
| !! | GTAGGTCAATTTGGCTCTCA+TGG | - | chr6_1:95601278-95601297 | Msa0900180:intron | 45.0% |
| GATGGTGATTGGATGCTAGT+TGG | - | chr6_1:95601386-95601405 | Msa0900180:intron | 45.0% | |
| !! | TGCTAGTTGGTGATGTTCCA+TGG | - | chr6_1:95601399-95601418 | Msa0900180:intron | 45.0% |
| ! | TTGCACTTTTCCATGGCTCT+TGG | + | chr6_1:95602092-95602111 | None:intergenic | 45.0% |
| ! | GCGACTTTTGCACTTTTCCA+TGG | + | chr6_1:95602099-95602118 | None:intergenic | 45.0% |
| !!! | AAATTTTTTTATATAGTTTT+TGG | - | chr6_1:95601630-95601649 | Msa0900180:intron | 5.0% |
| !! | TAAAAATAAAGAATTTATAT+TGG | - | chr6_1:95602036-95602055 | Msa0900180:CDS | 5.0% |
| CTCTCTGGTGATTCAGAACC+AGG | + | chr6_1:95599543-95599562 | None:intergenic | 50.0% | |
| TGCCCCATACTTGAGGAAAG+TGG | - | chr6_1:95600748-95600767 | Msa0900180:intron | 50.0% | |
| GTCCGATGTTTGTGGCTGTT+AGG | - | chr6_1:95601080-95601099 | Msa0900180:CDS | 50.0% | |
| GGCCTAACAGCCACAAACAT+CGG | + | chr6_1:95601085-95601104 | None:intergenic | 50.0% | |
| TTATGCAGCACCAAGAGCCA+TGG | - | chr6_1:95602079-95602098 | Msa0900180:CDS | 50.0% | |
| !! | GGAGGAAAAGCACCACATTG+TGG | + | chr6_1:95602146-95602165 | None:intergenic | 50.0% |
| GGCCACCAATCCGTTCTTTC+AGG | - | chr6_1:95600633-95600652 | Msa0900180:intron | 55.0% | |
| TGGATGGTGCCCCATACTTG+AGG | - | chr6_1:95600741-95600760 | Msa0900180:intron | 55.0% | |
| GATGCCTCAGTGCCACAATG+TGG | - | chr6_1:95602131-95602150 | Msa0900180:CDS | 55.0% | |
| AGCACCACATTGTGGCACTG+AGG | + | chr6_1:95602138-95602157 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 95599340 | 95602429 | 95599340 | ID=Msa0900180;Name=Msa0900180 |
| chr6_1 | mRNA | 95599340 | 95602429 | 95599340 | ID=Msa0900180-mRNA-1;Parent=Msa0900180;Name=Msa0900180-mRNA-1;_AED=0.11;_eAED=0.11;_QI=122|1|1|1|1|1|5|305|261 |
| chr6_1 | exon | 95599340 | 95599682 | 95599340 | ID=Msa0900180-mRNA-1:exon:16553;Parent=Msa0900180-mRNA-1 |
| chr6_1 | exon | 95599896 | 95599957 | 95599896 | ID=Msa0900180-mRNA-1:exon:16552;Parent=Msa0900180-mRNA-1 |
| chr6_1 | exon | 95600346 | 95600487 | 95600346 | ID=Msa0900180-mRNA-1:exon:16551;Parent=Msa0900180-mRNA-1 |
| chr6_1 | exon | 95600927 | 95601153 | 95600927 | ID=Msa0900180-mRNA-1:exon:16550;Parent=Msa0900180-mRNA-1 |
| chr6_1 | exon | 95601991 | 95602429 | 95601991 | ID=Msa0900180-mRNA-1:exon:16549;Parent=Msa0900180-mRNA-1 |
| chr6_1 | five_prime_UTR | 95602308 | 95602429 | 95602308 | ID=Msa0900180-mRNA-1:five_prime_utr;Parent=Msa0900180-mRNA-1 |
| chr6_1 | CDS | 95601991 | 95602307 | 95601991 | ID=Msa0900180-mRNA-1:cds;Parent=Msa0900180-mRNA-1 |
| chr6_1 | CDS | 95600927 | 95601153 | 95600927 | ID=Msa0900180-mRNA-1:cds;Parent=Msa0900180-mRNA-1 |
| chr6_1 | CDS | 95600346 | 95600487 | 95600346 | ID=Msa0900180-mRNA-1:cds;Parent=Msa0900180-mRNA-1 |
| chr6_1 | CDS | 95599896 | 95599957 | 95599896 | ID=Msa0900180-mRNA-1:cds;Parent=Msa0900180-mRNA-1 |
| chr6_1 | CDS | 95599645 | 95599682 | 95599645 | ID=Msa0900180-mRNA-1:cds;Parent=Msa0900180-mRNA-1 |
| chr6_1 | three_prime_UTR | 95599340 | 95599644 | 95599340 | ID=Msa0900180-mRNA-1:three_prime_utr;Parent=Msa0900180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
