Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966030 | sp|Q9XG80|PLA21_ORYSJ | 54.237 | 59 | 27 | 0 | 372 | 430 | 80 | 138 | 3.11e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966030 | G7KJ82 | 82.195 | 410 | 34 | 4 | 1 | 372 | 1 | 409 | 0.0 | 642 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043660 | Msa0966030 | 0.812478 | 4.155175e-51 | -8.615850e-47 |
| Msa0685140 | Msa0966030 | 0.819350 | 1.216529e-52 | -8.615850e-47 |
| Msa0689260 | Msa0966030 | 0.808053 | 3.741611e-50 | -8.615850e-47 |
| Msa0711780 | Msa0966030 | 0.807641 | 4.577285e-50 | -8.615850e-47 |
| Msa0715700 | Msa0966030 | 0.808719 | 2.697125e-50 | -8.615850e-47 |
| Msa0137550 | Msa0966030 | 0.812725 | 3.669418e-51 | -8.615850e-47 |
| Msa0168230 | Msa0966030 | 0.813020 | 3.162557e-51 | -8.615850e-47 |
| Msa0221960 | Msa0966030 | -0.801520 | 8.663283e-49 | -8.615850e-47 |
| Msa0542090 | Msa0966030 | 0.822489 | 2.305271e-53 | -8.615850e-47 |
| Msa0542130 | Msa0966030 | 0.823300 | 1.492117e-53 | -8.615850e-47 |
| Msa0945440 | Msa0966030 | 0.812830 | 3.479410e-51 | -8.615850e-47 |
| Msa0966030 | Msa1358250 | 0.807952 | 3.931232e-50 | -8.615850e-47 |
| Msa0966030 | Msa1392780 | 0.815258 | 1.013508e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966030 | MtrunA17_Chr6g0488071 | 82.195 | 410 | 34 | 4 | 1 | 372 | 1 | 409 | 0.0 | 642 |
| Msa0966030 | MtrunA17_Chr6g0488141 | 75.309 | 405 | 49 | 5 | 1 | 370 | 1 | 389 | 0.0 | 565 |
| Msa0966030 | MtrunA17_Chr6g0488291 | 77.536 | 276 | 22 | 4 | 1 | 236 | 1 | 276 | 5.87e-125 | 364 |
| Msa0966030 | MtrunA17_Chr1g0151731 | 32.039 | 412 | 209 | 13 | 14 | 366 | 14 | 413 | 1.74e-42 | 157 |
| Msa0966030 | MtrunA17_Chr6g0488021 | 93.220 | 59 | 4 | 0 | 372 | 430 | 172 | 230 | 1.61e-32 | 122 |
| Msa0966030 | MtrunA17_Chr6g0488031 | 69.492 | 59 | 18 | 0 | 372 | 430 | 40 | 98 | 7.85e-25 | 98.2 |
| Msa0966030 | MtrunA17_Chr6g0488001 | 81.132 | 53 | 10 | 0 | 372 | 424 | 135 | 187 | 1.03e-23 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966030 | AT5G11780.1 | 26.841 | 421 | 243 | 14 | 18 | 384 | 21 | 430 | 9.36e-29 | 118 |
| Msa0966030 | AT4G29470.1 | 41.463 | 82 | 34 | 3 | 350 | 425 | 66 | 139 | 4.12e-12 | 65.5 |
| Msa0966030 | AT4G29470.2 | 41.463 | 82 | 34 | 3 | 350 | 425 | 66 | 139 | 4.12e-12 | 65.5 |
| Msa0966030 | AT4G29460.1 | 44.444 | 63 | 29 | 1 | 372 | 428 | 80 | 142 | 9.60e-12 | 64.3 |
| Msa0966030 | AT2G19690.1 | 45.161 | 62 | 28 | 1 | 372 | 427 | 82 | 143 | 2.19e-11 | 62.0 |
Find 76 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCAAGAAATGCCTTATT+AGG | 0.143412 | 6_3:+93969489 | Msa0966030:CDS |
| TCTCATGGAAATCACAAATT+TGG | 0.169385 | 6_3:+93966807 | None:intergenic |
| GTCTATTCTGCAATCAAATT+TGG | 0.229642 | 6_3:+93966988 | Msa0966030:CDS |
| TGAATGATTTGGCTCGTCTT+TGG | 0.239540 | 6_3:+93967298 | Msa0966030:CDS |
| AGAAAATTCAGGGGATTCTT+TGG | 0.242463 | 6_3:-93966899 | None:intergenic |
| AGAGTTTCATGTTGGTTATT+TGG | 0.245828 | 6_3:+93967413 | Msa0966030:CDS |
| GAATGATTTGGCTCGTCTTT+GGG | 0.283844 | 6_3:+93967299 | Msa0966030:CDS |
| GCTTGTTCAGCTTCTGTTAG+TGG | 0.286482 | 6_3:+93967084 | Msa0966030:CDS |
| AGCCATCATGTTGAGCGATA+TGG | 0.292898 | 6_3:+93969595 | Msa0966030:CDS |
| TTTGCCTCTGAACTCAATAT+TGG | 0.294110 | 6_3:+93968349 | Msa0966030:CDS |
| TCTTTGGTTGATATGATTCT+TGG | 0.304559 | 6_3:+93967213 | Msa0966030:CDS |
| AATTATTTGTGAAGGTAAAT+TGG | 0.321645 | 6_3:-93968895 | None:intergenic |
| GTTCAAGAAATGCCTTATTA+GGG | 0.338293 | 6_3:+93969490 | Msa0966030:CDS |
| ACCTTCACAAATAATTAAAC+TGG | 0.339310 | 6_3:+93968902 | Msa0966030:CDS |
| TATGATACATAGTGTGGTTA+AGG | 0.342249 | 6_3:+93967143 | Msa0966030:CDS |
| ATCAAAAGATGGGTCAAGTT+TGG | 0.348170 | 6_3:-93966956 | None:intergenic |
| TGAGGATCCATTTGTCTTGC+CGG | 0.351271 | 6_3:-93968955 | None:intergenic |
| ATGTGGCTGTAGAGTATCTT+AGG | 0.354901 | 6_3:+93968723 | Msa0966030:CDS |
| TCAATGGAATGAGAAAATTC+AGG | 0.355310 | 6_3:-93966910 | None:intergenic |
| TGAAGAGAAAGATTTGGATT+TGG | 0.356237 | 6_3:+93967266 | Msa0966030:CDS |
| AATTTCTGAAGAGAAAGATT+TGG | 0.357567 | 6_3:+93967260 | Msa0966030:CDS |
| AGGAACAGTTTGAATTGAAA+AGG | 0.358615 | 6_3:+93967163 | Msa0966030:CDS |
| TTTCGAAAAGCCAACCTTCC+CGG | 0.362373 | 6_3:-93969522 | None:intergenic |
| AATGAAGGAAGTGAAATCTT+TGG | 0.369502 | 6_3:+93967197 | Msa0966030:CDS |
| CAGCAGCAGATTGCTCCGTT+TGG | 0.374351 | 6_3:-93969169 | None:intergenic |
| TTTGTTTGATTCTGTACTAT+TGG | 0.387596 | 6_3:+93968628 | Msa0966030:CDS |
| AGCAGCAGATTGCTCCGTTT+GGG | 0.388980 | 6_3:-93969168 | None:intergenic |
| CTTTGGTTGATATGATTCTT+GGG | 0.402702 | 6_3:+93967214 | Msa0966030:CDS |
| GAAAATTCAGGGGATTCTTT+GGG | 0.405005 | 6_3:-93966898 | None:intergenic |
| GGAACAGTTTGAATTGAAAA+GGG | 0.418531 | 6_3:+93967164 | Msa0966030:CDS |
| GAAAATGCCGGCAAGACAAA+TGG | 0.439409 | 6_3:+93968948 | Msa0966030:CDS |
| GATGTTTGTGGTTGGATTTG+TGG | 0.446199 | 6_3:+93967387 | Msa0966030:CDS |
| TTTCATGTTGGTTATTTGGC+TGG | 0.449161 | 6_3:+93967417 | Msa0966030:CDS |
| GCCATCATGTTGAGCGATAT+GGG | 0.452416 | 6_3:+93969596 | Msa0966030:CDS |
| TGAGTAGTGATGTTTGTGGT+TGG | 0.458478 | 6_3:+93967379 | Msa0966030:CDS |
| CAGTTCATGTAATGCATCAA+TGG | 0.462532 | 6_3:-93966926 | None:intergenic |
| CACATGTGTAACAATCAATC+TGG | 0.468222 | 6_3:-93968705 | None:intergenic |
| TTTGGCTGGTGCTGTTATGA+TGG | 0.474617 | 6_3:+93967431 | Msa0966030:CDS |
| GCTGCTCCTACCATGATAAG+AGG | 0.475805 | 6_3:+93969563 | Msa0966030:CDS |
| AAGGGAGAAGAAAGTAATGA+AGG | 0.479840 | 6_3:+93967182 | Msa0966030:CDS |
| TACAATCAGAGGTTCTTATG+AGG | 0.479898 | 6_3:+93968309 | Msa0966030:intron |
| TAGAGTTGTCTCTTATAGTA+AGG | 0.480176 | 6_3:+93968860 | Msa0966030:CDS |
| TAAGTCCATGCCTCTTATCA+TGG | 0.488069 | 6_3:-93969573 | None:intergenic |
| TTTGATATGGGATTGGAAAA+GGG | 0.490467 | 6_3:+93967483 | Msa0966030:CDS |
| ACCAGTTTAATTATTTGTGA+AGG | 0.491766 | 6_3:-93968903 | None:intergenic |
| CGACGATGATGATGCAAATG+AGG | 0.494007 | 6_3:+93967332 | Msa0966030:CDS |
| TTGCTGCGCCTTGAGAATCT+AGG | 0.499487 | 6_3:+93969086 | Msa0966030:CDS |
| ACCCACATCACATCAAAAGA+TGG | 0.500998 | 6_3:-93966967 | None:intergenic |
| GTTTGATTCTGTACTATTGG+TGG | 0.502223 | 6_3:+93968631 | Msa0966030:CDS |
| TACTTACTTATAAGTGCTCT+CGG | 0.508541 | 6_3:-93968978 | None:intergenic |
| CAATGGAATGAGAAAATTCA+GGG | 0.509336 | 6_3:-93966909 | None:intergenic |
| ACAAATTTGGTTCCTCATGT+TGG | 0.514732 | 6_3:+93966820 | Msa0966030:CDS |
| ATGTCTTGACATTTCCCAAA+CGG | 0.524378 | 6_3:+93969154 | Msa0966030:CDS |
| CAAACGGAGCAATCTGCTGC+TGG | 0.529824 | 6_3:+93969170 | Msa0966030:CDS |
| TGTGGTAAAGAGTTTCATGT+TGG | 0.533079 | 6_3:+93967405 | Msa0966030:CDS |
| GTAGGAGCAGCTGTACTGAC+TGG | 0.542480 | 6_3:-93969551 | None:intergenic |
| CTTGTGAGTAGTGATGTTTG+TGG | 0.550968 | 6_3:+93967375 | Msa0966030:CDS |
| AAACTGGTTTCAAACCAGAA+TGG | 0.551672 | 6_3:+93968918 | Msa0966030:CDS |
| ACCCATATCGCTCAACATGA+TGG | 0.561183 | 6_3:-93969597 | None:intergenic |
| GACGATGATGATGCAAATGA+GGG | 0.566547 | 6_3:+93967333 | Msa0966030:CDS |
| TTCTGATAGAATTTCTTGCA+TGG | 0.570840 | 6_3:-93966872 | None:intergenic |
| AATGGTATCGAGGAAAATGC+CGG | 0.571295 | 6_3:+93968936 | Msa0966030:CDS |
| CAATCAATCTGGTCAAGGCA+AGG | 0.586505 | 6_3:-93968694 | None:intergenic |
| CTCTAATTCCTAGATTCTCA+AGG | 0.593672 | 6_3:-93969094 | None:intergenic |
| CCCACATCACATCAAAAGAT+GGG | 0.595174 | 6_3:-93966966 | None:intergenic |
| AGACGAGCCAAATCATTCAA+AGG | 0.598943 | 6_3:-93967294 | None:intergenic |
| TGTAACAATCAATCTGGTCA+AGG | 0.610915 | 6_3:-93968699 | None:intergenic |
| CTAACCAATATTGAGTTCAG+AGG | 0.626021 | 6_3:-93968353 | None:intergenic |
| CAAACATCACTACTCACAAG+AGG | 0.634413 | 6_3:-93967372 | None:intergenic |
| TCCATGCCTCTTATCATGGT+AGG | 0.637649 | 6_3:-93969569 | None:intergenic |
| TCCTACCATGATAAGAGGCA+TGG | 0.649868 | 6_3:+93969568 | Msa0966030:CDS |
| TTCAAACCAGAATGGTATCG+AGG | 0.654461 | 6_3:+93968926 | Msa0966030:CDS |
| CAGATTGATTGTTACACATG+TGG | 0.676868 | 6_3:+93968706 | Msa0966030:CDS |
| ACTTATAAGTGCTCTCGGTG+AGG | 0.679393 | 6_3:-93968973 | None:intergenic |
| AATGGAATGAGAAAATTCAG+GGG | 0.687354 | 6_3:-93966908 | None:intergenic |
| ACGATGATGATGCAAATGAG+GGG | 0.709607 | 6_3:+93967334 | Msa0966030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAAGTATGTTTAATT+TGG | - | chr6_3:93968222-93968241 | None:intergenic | 10.0% |
| !! | AAAAATATTTCATTTCAATA+TGG | - | chr6_3:93969361-93969380 | None:intergenic | 10.0% |
| !!! | ATTGAAATGAAATATTTTTT+CGG | + | chr6_3:93969362-93969381 | Msa0966030:intron | 10.0% |
| !!! | ATTTTCTCAAAGTAAATTAT+CGG | - | chr6_3:93967681-93967700 | None:intergenic | 15.0% |
| !! | ACATTATCTCAAATTATTAT+CGG | - | chr6_3:93967979-93967998 | None:intergenic | 15.0% |
| !!! | TTTTTTTAAAAGCTATACTT+TGG | - | chr6_3:93968148-93968167 | None:intergenic | 15.0% |
| !! | ATCAATATCCATAAAAATAA+TGG | - | chr6_3:93968464-93968483 | None:intergenic | 15.0% |
| !!! | ATTGTGTTTGTTTTTTGATA+TGG | + | chr6_3:93967470-93967489 | Msa0966030:CDS | 20.0% |
| !!! | TTGTGTTTGTTTTTTGATAT+GGG | + | chr6_3:93967471-93967490 | Msa0966030:CDS | 20.0% |
| !! | GTTGAATGTAACTATATATT+TGG | + | chr6_3:93967707-93967726 | Msa0966030:intron | 20.0% |
| !! | TTTAAGCTAAAATATGTAGT+AGG | - | chr6_3:93967912-93967931 | None:intergenic | 20.0% |
| !! | TTGATTATCACTTATACTAT+TGG | + | chr6_3:93968479-93968498 | Msa0966030:intron | 20.0% |
| !! | ATGAAGAATTAGTTATTGTA+TGG | + | chr6_3:93968747-93968766 | Msa0966030:intron | 20.0% |
| !! | AATTATTTGTGAAGGTAAAT+TGG | - | chr6_3:93968898-93968917 | None:intergenic | 20.0% |
| !! | TTTCATAATTCTTTCTAGAT+TGG | + | chr6_3:93969063-93969082 | Msa0966030:intron | 20.0% |
| ! | CTATGTATCATAAAAACAAC+AGG | - | chr6_3:93967135-93967154 | None:intergenic | 25.0% |
| !!! | TGTTTTTATGATACATAGTG+TGG | + | chr6_3:93967137-93967156 | Msa0966030:CDS | 25.0% |
| !! | AATTTCTGAAGAGAAAGATT+TGG | + | chr6_3:93967260-93967279 | Msa0966030:CDS | 25.0% |
| !!! | TTTGTTTTTTGATATGGGAT+TGG | + | chr6_3:93967476-93967495 | Msa0966030:CDS | 25.0% |
| !!! | TTTCAGAATGTGTACTTTTT+GGG | + | chr6_3:93967555-93967574 | Msa0966030:intron | 25.0% |
| !! | CATAGCTTAAAACTTTTATG+TGG | + | chr6_3:93967808-93967827 | Msa0966030:intron | 25.0% |
| !! | TAAAACTTTTATGTGGTTGA+TGG | + | chr6_3:93967815-93967834 | Msa0966030:intron | 25.0% |
| !! | ACATAGCTTAAGTTTTTATC+TGG | + | chr6_3:93968049-93968068 | Msa0966030:intron | 25.0% |
| !! | TTAAGTTTTTATCTGGATGA+GGG | + | chr6_3:93968056-93968075 | Msa0966030:intron | 25.0% |
| !! | TTAATTTGGTCTGTTTGAAT+TGG | - | chr6_3:93968208-93968227 | None:intergenic | 25.0% |
| ! | CAGATATGCAATAAATAACA+AGG | - | chr6_3:93968387-93968406 | None:intergenic | 25.0% |
| ! | ATCCATAAAAATAATGGTGT+TGG | - | chr6_3:93968458-93968477 | None:intergenic | 25.0% |
| !! | CCAAATATAAACAGCTTTAA+TGG | - | chr6_3:93968562-93968581 | None:intergenic | 25.0% |
| ! | CCATTAAAGCTGTTTATATT+TGG | + | chr6_3:93968559-93968578 | Msa0966030:intron | 25.0% |
| ! | TTTGTTTGATTCTGTACTAT+TGG | + | chr6_3:93968628-93968647 | Msa0966030:CDS | 25.0% |
| ! | TGAAGCATAATTTCTGTTAA+TGG | + | chr6_3:93968812-93968831 | Msa0966030:intron | 25.0% |
| ! | ACCTTCACAAATAATTAAAC+TGG | + | chr6_3:93968902-93968921 | Msa0966030:CDS | 25.0% |
| ! | ACCAGTTTAATTATTTGTGA+AGG | - | chr6_3:93968906-93968925 | None:intergenic | 25.0% |
| !! | TTTTGTTCTTCTAATATCTG+TGG | + | chr6_3:93969003-93969022 | Msa0966030:intron | 25.0% |
| ! | NAACATTGTCAACGTAAAAA+AGG | - | chr6_3:93969226-93969245 | None:intergenic | 25.0% |
| ! | AAAGGTAATAGAAAATGTGA+AGG | - | chr6_3:93969393-93969412 | None:intergenic | 25.0% |
| ! | TTCTTTAAACTGACTAAACA+TGG | + | chr6_3:93969430-93969449 | Msa0966030:intron | 25.0% |
| TTCTGATAGAATTTCTTGCA+TGG | - | chr6_3:93966875-93966894 | None:intergenic | 30.0% | |
| AATGGAATGAGAAAATTCAG+GGG | - | chr6_3:93966911-93966930 | None:intergenic | 30.0% | |
| CAATGGAATGAGAAAATTCA+GGG | - | chr6_3:93966912-93966931 | None:intergenic | 30.0% | |
| TCAATGGAATGAGAAAATTC+AGG | - | chr6_3:93966913-93966932 | None:intergenic | 30.0% | |
| GTCTATTCTGCAATCAAATT+TGG | + | chr6_3:93966988-93967007 | Msa0966030:CDS | 30.0% | |
| TATGATACATAGTGTGGTTA+AGG | + | chr6_3:93967143-93967162 | Msa0966030:CDS | 30.0% | |
| AGGAACAGTTTGAATTGAAA+AGG | + | chr6_3:93967163-93967182 | Msa0966030:CDS | 30.0% | |
| GGAACAGTTTGAATTGAAAA+GGG | + | chr6_3:93967164-93967183 | Msa0966030:CDS | 30.0% | |
| AATGAAGGAAGTGAAATCTT+TGG | + | chr6_3:93967197-93967216 | Msa0966030:CDS | 30.0% | |
| ! | TCTTTGGTTGATATGATTCT+TGG | + | chr6_3:93967213-93967232 | Msa0966030:CDS | 30.0% |
| ! | CTTTGGTTGATATGATTCTT+GGG | + | chr6_3:93967214-93967233 | Msa0966030:CDS | 30.0% |
| TGAAGAGAAAGATTTGGATT+TGG | + | chr6_3:93967266-93967285 | Msa0966030:CDS | 30.0% | |
| ! | AGAGTTTCATGTTGGTTATT+TGG | + | chr6_3:93967413-93967432 | Msa0966030:CDS | 30.0% |
| ! | TTTTGATATGGGATTGGAAA+AGG | + | chr6_3:93967482-93967501 | Msa0966030:CDS | 30.0% |
| TTTGATATGGGATTGGAAAA+GGG | + | chr6_3:93967483-93967502 | Msa0966030:CDS | 30.0% | |
| ! | CTTTCAGAATGTGTACTTTT+TGG | + | chr6_3:93967554-93967573 | Msa0966030:intron | 30.0% |
| !!! | GGTGAGGTTTATTTTGTTTT+TGG | + | chr6_3:93967576-93967595 | Msa0966030:intron | 30.0% |
| TGTCAGTATCAATGTTTCAT+AGG | - | chr6_3:93967650-93967669 | None:intergenic | 30.0% | |
| ! | TACATTCAATGTGAAGTGTT+CGG | + | chr6_3:93967780-93967799 | Msa0966030:intron | 30.0% |
| ! | CTTAAGTTTTTATCTGGATG+AGG | + | chr6_3:93968055-93968074 | Msa0966030:intron | 30.0% |
| ! | AAACACCACAGTGATTTTAA+CGG | - | chr6_3:93968116-93968135 | None:intergenic | 30.0% |
| AAAAAAATCAAGATGACTCG+CGG | + | chr6_3:93968162-93968181 | Msa0966030:intron | 30.0% | |
| ! | TTTACCTTTTGTACAATCAG+AGG | + | chr6_3:93968298-93968317 | Msa0966030:intron | 30.0% |
| !!! | GTCCAACACCATTATTTTTA+TGG | + | chr6_3:93968453-93968472 | Msa0966030:intron | 30.0% |
| TTCTGTTAATGGTTTGATGT+AGG | + | chr6_3:93968823-93968842 | Msa0966030:intron | 30.0% | |
| TCTGTTAATGGTTTGATGTA+GGG | + | chr6_3:93968824-93968843 | Msa0966030:intron | 30.0% | |
| TAGAGTTGTCTCTTATAGTA+AGG | + | chr6_3:93968860-93968879 | Msa0966030:CDS | 30.0% | |
| TACTTACTTATAAGTGCTCT+CGG | - | chr6_3:93968981-93969000 | None:intergenic | 30.0% | |
| AATATCTGTGGTTTCAGAAA+TGG | + | chr6_3:93969015-93969034 | Msa0966030:intron | 30.0% | |
| AGTTTAAAGAAGCTAAAGAG+TGG | - | chr6_3:93969421-93969440 | None:intergenic | 30.0% | |
| ! | TGACTAAACATGGTTTTTAC+AGG | + | chr6_3:93969440-93969459 | Msa0966030:intron | 30.0% |
| ! | AGTTCAAGAAATGCCTTATT+AGG | + | chr6_3:93969489-93969508 | Msa0966030:CDS | 30.0% |
| ! | GTTCAAGAAATGCCTTATTA+GGG | + | chr6_3:93969490-93969509 | Msa0966030:CDS | 30.0% |
| ! | ACAAATTTGGTTCCTCATGT+TGG | + | chr6_3:93966820-93966839 | Msa0966030:CDS | 35.0% |
| GAAAATTCAGGGGATTCTTT+GGG | - | chr6_3:93966901-93966920 | None:intergenic | 35.0% | |
| AGAAAATTCAGGGGATTCTT+TGG | - | chr6_3:93966902-93966921 | None:intergenic | 35.0% | |
| CAGTTCATGTAATGCATCAA+TGG | - | chr6_3:93966929-93966948 | None:intergenic | 35.0% | |
| ATCAAAAGATGGGTCAAGTT+TGG | - | chr6_3:93966959-93966978 | None:intergenic | 35.0% | |
| GGTTGCAGAAAATCTCTTAA+AGG | + | chr6_3:93967009-93967028 | Msa0966030:intron | 35.0% | |
| AAGGGAGAAGAAAGTAATGA+AGG | + | chr6_3:93967182-93967201 | Msa0966030:CDS | 35.0% | |
| ! | GGTTTTGCCTTTGAATGATT+TGG | + | chr6_3:93967287-93967306 | Msa0966030:CDS | 35.0% |
| TGTGGTAAAGAGTTTCATGT+TGG | + | chr6_3:93967405-93967424 | Msa0966030:CDS | 35.0% | |
| ! | TTTCATGTTGGTTATTTGGC+TGG | + | chr6_3:93967417-93967436 | Msa0966030:CDS | 35.0% |
| ACTTCACATTGAATGTACCT+CGG | - | chr6_3:93967777-93967796 | None:intergenic | 35.0% | |
| CGCTGAAAAAGATCATTGAA+TGG | - | chr6_3:93967848-93967867 | None:intergenic | 35.0% | |
| !!! | TTCAATGATCTTTTTCAGCG+AGG | + | chr6_3:93967848-93967867 | Msa0966030:intron | 35.0% |
| GGAGTTAATACATGTAGTGT+AGG | - | chr6_3:93967958-93967977 | None:intergenic | 35.0% | |
| TCAGTGTATGTTTGGATTGA+CGG | + | chr6_3:93968085-93968104 | Msa0966030:intron | 35.0% | |
| GTTAAAATCACTGTGGTGTT+TGG | + | chr6_3:93968115-93968134 | Msa0966030:intron | 35.0% | |
| ATTTGGTCTGTTTGAATTGG+CGG | - | chr6_3:93968205-93968224 | None:intergenic | 35.0% | |
| ! | GTGCTGTTCTTTGTTTAATG+TGG | + | chr6_3:93968274-93968293 | Msa0966030:intron | 35.0% |
| AGAACCTCTGATTGTACAAA+AGG | - | chr6_3:93968305-93968324 | None:intergenic | 35.0% | |
| TACAATCAGAGGTTCTTATG+AGG | + | chr6_3:93968309-93968328 | Msa0966030:intron | 35.0% | |
| TTTGCCTCTGAACTCAATAT+TGG | + | chr6_3:93968349-93968368 | Msa0966030:CDS | 35.0% | |
| CTAACCAATATTGAGTTCAG+AGG | - | chr6_3:93968356-93968375 | None:intergenic | 35.0% | |
| GTTTGATTCTGTACTATTGG+TGG | + | chr6_3:93968631-93968650 | Msa0966030:CDS | 35.0% | |
| TGTAACAATCAATCTGGTCA+AGG | - | chr6_3:93968702-93968721 | None:intergenic | 35.0% | |
| CACATGTGTAACAATCAATC+TGG | - | chr6_3:93968708-93968727 | None:intergenic | 35.0% | |
| CAGATTGATTGTTACACATG+TGG | + | chr6_3:93968706-93968725 | Msa0966030:CDS | 35.0% | |
| ! | AAACTGGTTTCAAACCAGAA+TGG | + | chr6_3:93968918-93968937 | Msa0966030:CDS | 35.0% |
| AAATGGTACCCAATGAAGTA+CGG | + | chr6_3:93969032-93969051 | Msa0966030:intron | 35.0% | |
| TATGTTAGCCGTACTTCATT+GGG | - | chr6_3:93969043-93969062 | None:intergenic | 35.0% | |
| ATATGTTAGCCGTACTTCAT+TGG | - | chr6_3:93969044-93969063 | None:intergenic | 35.0% | |
| CTCTAATTCCTAGATTCTCA+AGG | - | chr6_3:93969097-93969116 | None:intergenic | 35.0% | |
| ATGTCTTGACATTTCCCAAA+CGG | + | chr6_3:93969154-93969173 | Msa0966030:CDS | 35.0% | |
| ! | GTGTAGTTTTCACCAACATG+AGG | - | chr6_3:93966835-93966854 | None:intergenic | 40.0% |
| !! | CATGGTGTTTTTCAGCTTCA+GGG | - | chr6_3:93966857-93966876 | None:intergenic | 40.0% |
| ! | ACCCATCTTTTGATGTGATG+TGG | + | chr6_3:93966965-93966984 | Msa0966030:CDS | 40.0% |
| CCCACATCACATCAAAAGAT+GGG | - | chr6_3:93966969-93966988 | None:intergenic | 40.0% | |
| ! | CCCATCTTTTGATGTGATGT+GGG | + | chr6_3:93966966-93966985 | Msa0966030:CDS | 40.0% |
| ACCCACATCACATCAAAAGA+TGG | - | chr6_3:93966970-93966989 | None:intergenic | 40.0% | |
| AGACGAGCCAAATCATTCAA+AGG | - | chr6_3:93967297-93967316 | None:intergenic | 40.0% | |
| ! | TGAATGATTTGGCTCGTCTT+TGG | + | chr6_3:93967298-93967317 | Msa0966030:CDS | 40.0% |
| ! | GAATGATTTGGCTCGTCTTT+GGG | + | chr6_3:93967299-93967318 | Msa0966030:CDS | 40.0% |
| ! | GACGATGATGATGCAAATGA+GGG | + | chr6_3:93967333-93967352 | Msa0966030:CDS | 40.0% |
| ! | ACGATGATGATGCAAATGAG+GGG | + | chr6_3:93967334-93967353 | Msa0966030:CDS | 40.0% |
| CAAACATCACTACTCACAAG+AGG | - | chr6_3:93967375-93967394 | None:intergenic | 40.0% | |
| CTTGTGAGTAGTGATGTTTG+TGG | + | chr6_3:93967375-93967394 | Msa0966030:CDS | 40.0% | |
| TGAGTAGTGATGTTTGTGGT+TGG | + | chr6_3:93967379-93967398 | Msa0966030:CDS | 40.0% | |
| GATGTTTGTGGTTGGATTTG+TGG | + | chr6_3:93967387-93967406 | Msa0966030:CDS | 40.0% | |
| TGGAAATGTGCCTTAAGAGT+TGG | + | chr6_3:93967511-93967530 | Msa0966030:intron | 40.0% | |
| !!! | GAATGTGTACTTTTTGGGTG+AGG | + | chr6_3:93967560-93967579 | Msa0966030:intron | 40.0% |
| GGATGAGTTCAGTGTATGTT+TGG | + | chr6_3:93968077-93968096 | Msa0966030:intron | 40.0% | |
| TGAGTCCGTTAAAATCACTG+TGG | + | chr6_3:93968108-93968127 | Msa0966030:intron | 40.0% | |
| GTTTGAATTGGCGGTGAAAT+TGG | - | chr6_3:93968196-93968215 | None:intergenic | 40.0% | |
| ! | GGCAAGGCTTTTTATGTACT+TGG | - | chr6_3:93968681-93968700 | None:intergenic | 40.0% |
| ! | ATGTGGCTGTAGAGTATCTT+AGG | + | chr6_3:93968723-93968742 | Msa0966030:CDS | 40.0% |
| TTCAAACCAGAATGGTATCG+AGG | + | chr6_3:93968926-93968945 | Msa0966030:CDS | 40.0% | |
| ! | CATTTTCCTCGATACCATTC+TGG | - | chr6_3:93968935-93968954 | None:intergenic | 40.0% |
| ! | AATGGTATCGAGGAAAATGC+CGG | + | chr6_3:93968936-93968955 | Msa0966030:CDS | 40.0% |
| ATCTGTTATCTTGCCGTCTA+AGG | - | chr6_3:93969198-93969217 | None:intergenic | 40.0% | |
| AGCTAAAGAGTGGTCTCAAA+AGG | - | chr6_3:93969411-93969430 | None:intergenic | 40.0% | |
| CTTATTAGGGCACAAAAAGC+CGG | + | chr6_3:93969503-93969522 | Msa0966030:CDS | 40.0% | |
| TTATTAGGGCACAAAAAGCC+GGG | + | chr6_3:93969504-93969523 | Msa0966030:CDS | 40.0% | |
| TAAGTCCATGCCTCTTATCA+TGG | - | chr6_3:93969576-93969595 | None:intergenic | 40.0% | |
| !! | GCATGGTGTTTTTCAGCTTC+AGG | - | chr6_3:93966858-93966877 | None:intergenic | 45.0% |
| GCTTGTTCAGCTTCTGTTAG+TGG | + | chr6_3:93967084-93967103 | Msa0966030:CDS | 45.0% | |
| ! | CGACGATGATGATGCAAATG+AGG | + | chr6_3:93967332-93967351 | Msa0966030:CDS | 45.0% |
| !! | TTTGGCTGGTGCTGTTATGA+TGG | + | chr6_3:93967431-93967450 | Msa0966030:CDS | 45.0% |
| GGGATTGGAAAAGGGTGAAT+TGG | + | chr6_3:93967491-93967510 | Msa0966030:intron | 45.0% | |
| TGCCTTAAGAGTTGGAGTGT+TGG | + | chr6_3:93967519-93967538 | Msa0966030:intron | 45.0% | |
| AGCCAACACTCCAACTCTTA+AGG | - | chr6_3:93967524-93967543 | None:intergenic | 45.0% | |
| TGTACGTCATCGACACACAT+CGG | + | chr6_3:93967747-93967766 | Msa0966030:intron | 45.0% | |
| ! | CTTCACACTAAAGGCATGTC+CGG | - | chr6_3:93968019-93968038 | None:intergenic | 45.0% |
| ! | GTGTCGACACTTCACACTAA+AGG | - | chr6_3:93968028-93968047 | None:intergenic | 45.0% |
| CAATCAATCTGGTCAAGGCA+AGG | - | chr6_3:93968697-93968716 | None:intergenic | 45.0% | |
| GAAAATGCCGGCAAGACAAA+TGG | + | chr6_3:93968948-93968967 | Msa0966030:CDS | 45.0% | |
| TGAGGATCCATTTGTCTTGC+CGG | - | chr6_3:93968958-93968977 | None:intergenic | 45.0% | |
| ACTTATAAGTGCTCTCGGTG+AGG | - | chr6_3:93968976-93968995 | None:intergenic | 45.0% | |
| GACGGCAAGATAACAGATGA+CGG | + | chr6_3:93969200-93969219 | Msa0966030:intron | 45.0% | |
| ! | CGGCTTTTTGTGCCCTAATA+AGG | - | chr6_3:93969505-93969524 | None:intergenic | 45.0% |
| TTTCGAAAAGCCAACCTTCC+CGG | - | chr6_3:93969525-93969544 | None:intergenic | 45.0% | |
| TCCTACCATGATAAGAGGCA+TGG | + | chr6_3:93969568-93969587 | Msa0966030:CDS | 45.0% | |
| TCCATGCCTCTTATCATGGT+AGG | - | chr6_3:93969572-93969591 | None:intergenic | 45.0% | |
| AGCCATCATGTTGAGCGATA+TGG | + | chr6_3:93969595-93969614 | Msa0966030:CDS | 45.0% | |
| GCCATCATGTTGAGCGATAT+GGG | + | chr6_3:93969596-93969615 | Msa0966030:CDS | 45.0% | |
| ACCCATATCGCTCAACATGA+TGG | - | chr6_3:93969600-93969619 | None:intergenic | 45.0% | |
| !!! | TTATTATTATTTTTTTGTTT+TGG | + | chr6_3:93967876-93967895 | Msa0966030:intron | 5.0% |
| ATTTGGCTGCGTTGTCTCTG+TGG | + | chr6_3:93967724-93967743 | Msa0966030:intron | 50.0% | |
| GTATCCATGCGTCTGTGTAC+CGG | + | chr6_3:93967997-93968016 | Msa0966030:intron | 50.0% | |
| TTGCTGCGCCTTGAGAATCT+AGG | + | chr6_3:93969086-93969105 | Msa0966030:CDS | 50.0% | |
| AGCAGCAGATTGCTCCGTTT+GGG | - | chr6_3:93969171-93969190 | None:intergenic | 50.0% | |
| TCTGCTGCTGGTACCTTAGA+CGG | + | chr6_3:93969182-93969201 | Msa0966030:intron | 50.0% | |
| GCTGCTCCTACCATGATAAG+AGG | + | chr6_3:93969563-93969582 | Msa0966030:CDS | 50.0% | |
| ATGTCCGGTACACAGACGCA+TGG | - | chr6_3:93968004-93968023 | None:intergenic | 55.0% | |
| CAGCAGCAGATTGCTCCGTT+TGG | - | chr6_3:93969172-93969191 | None:intergenic | 55.0% | |
| CAAACGGAGCAATCTGCTGC+TGG | + | chr6_3:93969170-93969189 | Msa0966030:CDS | 55.0% | |
| TAGGGCACAAAAAGCCGGGA+AGG | + | chr6_3:93969508-93969527 | Msa0966030:CDS | 55.0% | |
| GCACAAAAAGCCGGGAAGGT+TGG | + | chr6_3:93969512-93969531 | Msa0966030:CDS | 55.0% | |
| ! | GTAGGAGCAGCTGTACTGAC+TGG | - | chr6_3:93969554-93969573 | None:intergenic | 55.0% |
| CGACACACATCGGACAACCG+AGG | + | chr6_3:93967757-93967776 | Msa0966030:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 93966811 | 93969640 | 93966811 | ID=Msa0966030;Name=Msa0966030 |
| chr6_3 | mRNA | 93966811 | 93969640 | 93966811 | ID=Msa0966030-mRNA-1;Parent=Msa0966030;Name=Msa0966030-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0.42|0.37|1|0.57|0.62|8|0|430 |
| chr6_3 | exon | 93966811 | 93967009 | 93966811 | ID=Msa0966030-mRNA-1:exon:17267;Parent=Msa0966030-mRNA-1 |
| chr6_3 | exon | 93967031 | 93967235 | 93967031 | ID=Msa0966030-mRNA-1:exon:17268;Parent=Msa0966030-mRNA-1 |
| chr6_3 | exon | 93967257 | 93967504 | 93967257 | ID=Msa0966030-mRNA-1:exon:17269;Parent=Msa0966030-mRNA-1 |
| chr6_3 | exon | 93968318 | 93968370 | 93968318 | ID=Msa0966030-mRNA-1:exon:17270;Parent=Msa0966030-mRNA-1 |
| chr6_3 | exon | 93968596 | 93968744 | 93968596 | ID=Msa0966030-mRNA-1:exon:17271;Parent=Msa0966030-mRNA-1 |
| chr6_3 | exon | 93968845 | 93968993 | 93968845 | ID=Msa0966030-mRNA-1:exon:17272;Parent=Msa0966030-mRNA-1 |
| chr6_3 | exon | 93969081 | 93969191 | 93969081 | ID=Msa0966030-mRNA-1:exon:17273;Parent=Msa0966030-mRNA-1 |
| chr6_3 | exon | 93969462 | 93969640 | 93969462 | ID=Msa0966030-mRNA-1:exon:17274;Parent=Msa0966030-mRNA-1 |
| chr6_3 | CDS | 93966811 | 93967009 | 93966811 | ID=Msa0966030-mRNA-1:cds;Parent=Msa0966030-mRNA-1 |
| chr6_3 | CDS | 93967031 | 93967235 | 93967031 | ID=Msa0966030-mRNA-1:cds;Parent=Msa0966030-mRNA-1 |
| chr6_3 | CDS | 93967257 | 93967504 | 93967257 | ID=Msa0966030-mRNA-1:cds;Parent=Msa0966030-mRNA-1 |
| chr6_3 | CDS | 93968318 | 93968370 | 93968318 | ID=Msa0966030-mRNA-1:cds;Parent=Msa0966030-mRNA-1 |
| chr6_3 | CDS | 93968596 | 93968744 | 93968596 | ID=Msa0966030-mRNA-1:cds;Parent=Msa0966030-mRNA-1 |
| chr6_3 | CDS | 93968845 | 93968993 | 93968845 | ID=Msa0966030-mRNA-1:cds;Parent=Msa0966030-mRNA-1 |
| chr6_3 | CDS | 93969081 | 93969191 | 93969081 | ID=Msa0966030-mRNA-1:cds;Parent=Msa0966030-mRNA-1 |
| chr6_3 | CDS | 93969462 | 93969640 | 93969462 | ID=Msa0966030-mRNA-1:cds;Parent=Msa0966030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
