AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168230 MtrunA17_Chr1g0184181 96.721 610 20 0 1 610 1 610 0.0 1211
Msa0168230 MtrunA17_Chr8g0388631 28.514 498 331 6 91 574 65 551 1.30e-48 179
Msa0168230 MtrunA17_Chr8g0346601 27.076 554 360 10 33 575 17 537 9.59e-44 165
Msa0168230 MtrunA17_Chr3g0117701 26.130 509 360 6 83 582 245 746 4.30e-42 162
Msa0168230 MtrunA17_Chr6g0450741 27.677 495 325 7 98 574 190 669 1.69e-40 157
Msa0168230 MtrunA17_Chr4g0059101 25.102 490 355 5 91 573 167 651 3.75e-40 156
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168230 AT2G31240.1 66.031 577 184 6 22 590 39 611 0.0 778
Msa0168230 AT3G27960.1 29.981 527 347 11 91 603 143 661 3.79e-52 191
Msa0168230 AT3G27960.3 29.981 527 347 11 91 603 143 661 3.79e-52 191
Msa0168230 AT4G10840.1 28.994 507 325 9 93 575 78 573 1.75e-47 177
Msa0168230 AT3G27960.2 29.825 456 302 8 91 533 143 593 2.04e-47 176
Msa0168230 AT4G10840.2 28.664 464 297 8 93 533 78 530 1.56e-43 164
Msa0168230 AT1G27500.1 26.582 474 335 5 114 579 161 629 7.06e-41 158
Msa0168230 AT1G27500.2 26.446 484 323 7 114 579 172 640 7.15e-41 158

Find 165 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATATCAGTCATATATTT+TGG 0.085468 1_4:-50670732 Msa0168230:three_prime_UTR
TGCTATGAGTTTGCAGTTAA+TGG 0.164879 1_4:-50673701 Msa0168230:CDS
GAAGCAGGCTATTCCTTATT+TGG 0.171283 1_4:-50672771 Msa0168230:CDS
TGGTTATATCTACAACAATT+TGG 0.200770 1_4:-50672696 Msa0168230:CDS
AGCTTTGGTCCCAAACATTT+TGG 0.213827 1_4:-50672722 Msa0168230:CDS
GGTTTGTTGCGGGTGAAAAT+AGG 0.214873 1_4:+50674030 None:intergenic
GCTGCATGTGTATTATTATT+AGG 0.225487 1_4:+50671055 None:intergenic
GGTATCTTAATAAGGCTAAT+AGG 0.226066 1_4:-50673636 Msa0168230:CDS
TCGGAAGTGTTTGGAGATTA+AGG 0.232786 1_4:-50673485 Msa0168230:CDS
TAATAAGGCTAATAGGGTTT+TGG 0.236340 1_4:-50673629 Msa0168230:CDS
GAGGAAGATAGTGAGGAGTT+AGG 0.240509 1_4:-50673451 Msa0168230:CDS
ATGCTGCAGGTGTACTATTA+TGG 0.241724 1_4:+50670993 None:intergenic
GGCGCTTCCGTATTGTTTAA+AGG 0.255513 1_4:-50673374 Msa0168230:CDS
AATTATATAAGCTAGCTTAT+TGG 0.260877 1_4:+50670848 None:intergenic
GGTTATATCTACAACAATTT+GGG 0.261299 1_4:-50672695 Msa0168230:CDS
GGGTGGTTGTTGTTGCTTAC+AGG 0.274076 1_4:-50672800 Msa0168230:CDS
AGGAGTTAGGGAAAGGGAAT+AGG 0.275680 1_4:-50673438 Msa0168230:CDS
GAGCATTTCTTCGGTTGTTT+TGG 0.276205 1_4:+50673894 None:intergenic
TCAGCAGCACTTTCCAAATA+AGG 0.279505 1_4:+50672758 None:intergenic
AAAAGTTTGCAGACTGTAAA+AGG 0.282943 1_4:-50673027 Msa0168230:CDS
GGTTTAGCTGCATTGAAAAT+TGG 0.289450 1_4:-50673826 Msa0168230:CDS
GTCTTAATTATGGTTTAAAT+AGG 0.293303 1_4:-50673675 Msa0168230:CDS
TGTGTCAGGTTGGGAGTTAC+TGG 0.296347 1_4:+50670970 None:intergenic
GGTGTAGAGGGGTTTGTTGC+GGG 0.299833 1_4:+50674020 None:intergenic
AATAGGTTTAGTGATAGTTT+AGG 0.302645 1_4:-50673658 Msa0168230:CDS
TCAAAGGCTTATGGTGATAT+TGG 0.309390 1_4:-50672548 Msa0168230:CDS
AGGAAGATAGTGAGGAGTTA+GGG 0.310369 1_4:-50673450 Msa0168230:CDS
ATAGGTTTAGTGATAGTTTA+GGG 0.311847 1_4:-50673657 Msa0168230:CDS
ACGAGCGAGGTGAGAGAAAA+AGG 0.315849 1_4:+50674098 None:intergenic
TTAATGGGTAGTCTTAATTA+TGG 0.322455 1_4:-50673685 Msa0168230:CDS
ATAAGCTAGCTTATTGGTAT+TGG 0.325138 1_4:+50670854 None:intergenic
CAGAATCTTTCAAAGGCTTA+TGG 0.327198 1_4:-50672557 Msa0168230:CDS
CCTCCGAGTGCTGCTCTTGT+GGG 0.336592 1_4:+50672843 None:intergenic
TATGTCAGGTTGGGAGTTAT+TGG 0.341920 1_4:+50671030 None:intergenic
AGGTGTTTAGAGATTTCTAT+TGG 0.345983 1_4:-50673007 Msa0168230:CDS
GTATCTTAATAAGGCTAATA+GGG 0.348444 1_4:-50673635 Msa0168230:CDS
GAGATACATACGAAGCGATT+AGG 0.352147 1_4:-50673346 Msa0168230:CDS
TATTTGACTGAATTGGTTGC+TGG 0.355631 1_4:-50670803 Msa0168230:three_prime_UTR
GGCGTTGGAGCAGAATGTTT+TGG 0.357994 1_4:-50673248 Msa0168230:CDS
GTTTGTTGCGGGTGAAAATA+GGG 0.359213 1_4:+50674031 None:intergenic
AGAGAATCTTCGGAAGTGTT+TGG 0.370920 1_4:-50673494 Msa0168230:CDS
GCGAATATGATGATTGCTTT+GGG 0.375275 1_4:-50673163 Msa0168230:CDS
ATAACCAACTCCAAAATGTT+TGG 0.376664 1_4:+50672712 None:intergenic
AGGGTTGACATGGTTTGAAA+TGG 0.377879 1_4:+50673997 None:intergenic
CTTCTTGGGATTGTTTATAG+TGG 0.378113 1_4:-50673289 Msa0168230:CDS
GTGTTTGTGTTGATGATGTT+AGG 0.380305 1_4:-50673588 Msa0168230:CDS
GCGCATGATAGGAAGCTTCT+TGG 0.385283 1_4:-50673304 Msa0168230:CDS
TAGTTTAGGGTATCTTAATA+AGG 0.387240 1_4:-50673644 Msa0168230:CDS
GGAAATTTCATTCAATGAAA+AGG 0.398867 1_4:-50673854 Msa0168230:CDS
CTTCTTCTGCACTTGCTCCA+TGG 0.399591 1_4:+50671170 None:intergenic
AGATACATACGAAGCGATTA+GGG 0.403607 1_4:-50673345 Msa0168230:CDS
CCCTCCGAGTGCTGCTCTTG+TGG 0.404697 1_4:+50672842 None:intergenic
GCTATGAGTTTGCAGTTAAT+GGG 0.407040 1_4:-50673700 Msa0168230:CDS
CTGTTGAGGTTGCGCATGAT+AGG 0.407770 1_4:-50673315 Msa0168230:CDS
GGATGTCTGCTAAACTGTTC+GGG 0.410647 1_4:+50670934 None:intergenic
TGCGAATATGATGATTGCTT+TGG 0.410869 1_4:-50673164 Msa0168230:CDS
AGCAGCAAGTTATAGATGCT+TGG 0.412778 1_4:-50671198 Msa0168230:CDS
AGCTCTTGTGCTTGTATCAA+TGG 0.413035 1_4:-50673071 Msa0168230:CDS
GGAGTTAGGGAAAGGGAATA+GGG 0.418677 1_4:-50673437 Msa0168230:CDS
TAACCAACTCCAAAATGTTT+GGG 0.419203 1_4:+50672713 None:intergenic
GGGTTGACATGGTTTGAAAT+GGG 0.422427 1_4:+50673998 None:intergenic
TGGGATTGTTTATAGTGGGA+TGG 0.423640 1_4:-50673284 Msa0168230:CDS
GGAAGTGTATCTGCAAGAAT+AGG 0.426493 1_4:-50672821 Msa0168230:CDS
GGGGAAAGCGTTATGTAATC+AGG 0.427739 1_4:-50673050 Msa0168230:CDS
CGCATGATAGGAAGCTTCTT+GGG 0.430357 1_4:-50673303 Msa0168230:CDS
GAATGCTTTGAGCATTTCTT+CGG 0.432282 1_4:+50673885 None:intergenic
GGTTTGAAATGGGGTGTAGA+GGG 0.432347 1_4:+50674008 None:intergenic
AGGATGTCTGCTAAACTGTT+CGG 0.436022 1_4:+50670933 None:intergenic
GGGTGTAGAGGGGTTTGTTG+CGG 0.438716 1_4:+50674019 None:intergenic
GCTCTTGTGCTTGTATCAAT+GGG 0.440321 1_4:-50673070 Msa0168230:CDS
AAGAGGCGCTAGAGAATCTT+CGG 0.442376 1_4:-50673504 Msa0168230:CDS
GGTGTTTAGAGATTTCTATT+GGG 0.444294 1_4:-50673006 Msa0168230:CDS
GATTGACGTGGCGGTGTGTC+AGG 0.451015 1_4:+50670956 None:intergenic
GCAGCAAGTTATAGATGCTT+GGG 0.454415 1_4:-50671197 Msa0168230:CDS
TCATGCTGTGCAATTTGAGT+TGG 0.455338 1_4:-50673557 Msa0168230:CDS
TGCTGCAGGTGTACTATTAT+GGG 0.459170 1_4:+50670994 None:intergenic
GAAGTGTATCTGCAAGAATA+GGG 0.459783 1_4:-50672820 Msa0168230:CDS
ATAGTGAGGAGTTAGGGAAA+GGG 0.461155 1_4:-50673444 Msa0168230:CDS
GGAAAGGGAAGAGCCTTCAT+AGG 0.464833 1_4:+50671076 None:intergenic
AACTGCAAACTCATAGCATA+AGG 0.469559 1_4:+50673706 None:intergenic
GCGGGTGAAAATAGGGTTGA+TGG 0.478725 1_4:+50674038 None:intergenic
TGTGTATTATTATTAGGAAA+GGG 0.478913 1_4:+50671061 None:intergenic
GTCAGCAGCGCAGATGTTTG+CGG 0.481206 1_4:-50672642 Msa0168230:CDS
TTCTTGGGATTGTTTATAGT+GGG 0.486322 1_4:-50673288 Msa0168230:CDS
AGAAACCTCCATGATATCCT+TGG 0.489502 1_4:+50672616 None:intergenic
TCATTCAATGAAAAGGAGCT+TGG 0.491295 1_4:-50673847 Msa0168230:CDS
GCTAATGTTAAGACGGCGAT+GGG 0.491334 1_4:-50673535 Msa0168230:CDS
TTTGGGTAGGTTAGAGAATG+AGG 0.492492 1_4:-50673611 Msa0168230:CDS
GAACGGTTGAAAGAGAGCTT+TGG 0.492632 1_4:-50672737 Msa0168230:CDS
GTTGTTGTTGCTTACAGGTA+AGG 0.496912 1_4:-50672795 Msa0168230:CDS
TGCAAATGAGGTTCCTATGA+AGG 0.499756 1_4:-50671089 Msa0168230:CDS
GAAGAATTGGAATCTCAGTT+CGG 0.503248 1_4:-50673212 Msa0168230:CDS
GATGTAACGGTATGTCAGGT+TGG 0.504036 1_4:+50671020 None:intergenic
AAAATATGCTGTTGTGAAAG+AGG 0.504715 1_4:+50670913 None:intergenic
TTGATGAATGCCTATGGTAC+TGG 0.507101 1_4:-50670892 Msa0168230:three_prime_UTR
GATAGTGAGGAGTTAGGGAA+AGG 0.510103 1_4:-50673445 Msa0168230:CDS
TGGTTTGAAATGGGGTGTAG+AGG 0.511003 1_4:+50674007 None:intergenic
CTGCGATTTCGTTGCTGAAG+AGG 0.511189 1_4:-50672889 Msa0168230:CDS
ATGTAACGGTATGTCAGGTT+GGG 0.511251 1_4:+50671021 None:intergenic
TTGGGTAGGTTAGAGAATGA+GGG 0.511672 1_4:-50673610 Msa0168230:CDS
ACGTGGCGGTGTGTCAGGTT+GGG 0.514066 1_4:+50670961 None:intergenic
GATATCATGGAGGTTTCTCT+TGG 0.517703 1_4:-50672611 Msa0168230:CDS
GTTCATAGTTTCATATAGCA+TGG 0.522310 1_4:+50672922 None:intergenic
GATTGTTTATAGTGGGATGG+AGG 0.522341 1_4:-50673281 Msa0168230:CDS
GTTTGAAATGGGGTGTAGAG+GGG 0.522438 1_4:+50674009 None:intergenic
GACGTGGCGGTGTGTCAGGT+TGG 0.523342 1_4:+50670960 None:intergenic
GCTCAAAGCATTCAGTGAGA+TGG 0.525816 1_4:-50673875 Msa0168230:CDS
TGCGATTTCGTTGCTGAAGA+GGG 0.530007 1_4:-50672888 Msa0168230:CDS
TGCGGTAGCCAAGGATATCA+TGG 0.531067 1_4:-50672624 Msa0168230:CDS
CCGCGGTGTCTCTGCAAATG+AGG 0.535152 1_4:-50671101 Msa0168230:CDS
TGTCTAGGAGAGATTTGAGT+GGG 0.536028 1_4:+50673964 None:intergenic
GAAAGGGAATAGGGATTTAG+CGG 0.537665 1_4:-50673428 Msa0168230:CDS
GCTTACAGGTAAGGTGAAGC+AGG 0.537806 1_4:-50672786 Msa0168230:CDS
GGAAGTTTCTGAGGCATACT+CGG 0.541766 1_4:-50672951 Msa0168230:CDS
AAACTTTATACCAGTACCAT+AGG 0.543632 1_4:+50670882 None:intergenic
CTATTATGGGATTGATGTAA+CGG 0.547602 1_4:+50671007 None:intergenic
GAAACTCAATTGCAAGGGAA+TGG 0.548823 1_4:+50671221 None:intergenic
ATGTGTATTATTATTAGGAA+AGG 0.552489 1_4:+50671060 None:intergenic
CCACAAGAGCAGCACTCGGA+GGG 0.552886 1_4:-50672842 Msa0168230:CDS
GGAGGATCATGAGAAGGCGT+TGG 0.552931 1_4:-50673263 Msa0168230:CDS
GGTTGACATGGTTTGAAATG+GGG 0.565019 1_4:+50673999 None:intergenic
TGAGTTGGCTAATGTTAAGA+CGG 0.567694 1_4:-50673542 Msa0168230:CDS
GATTGATGTAACGGTATGTC+AGG 0.570067 1_4:+50671016 None:intergenic
GGCGATGGGGAGGAGAGAAG+AGG 0.570707 1_4:-50673521 Msa0168230:CDS
TCTAACGCCTTTAAACAATA+CGG 0.571467 1_4:+50673367 None:intergenic
AGCATGTCAGAATCTTTCAA+AGG 0.573306 1_4:-50672564 Msa0168230:CDS
GGCTAATGTTAAGACGGCGA+TGG 0.573411 1_4:-50673536 Msa0168230:CDS
GGGAGATACGATGAAGCTGT+TGG 0.573991 1_4:-50673142 Msa0168230:CDS
GCTGCTGAAACTCAATTGCA+AGG 0.574173 1_4:+50671215 None:intergenic
AATTGCACAGCATGAAGCAC+AGG 0.576090 1_4:+50673565 None:intergenic
GTTATATCTACAACAATTTG+GGG 0.576788 1_4:-50672694 Msa0168230:CDS
AGGCTTATGGTGATATTGGA+AGG 0.580409 1_4:-50672544 Msa0168230:intron
CTGCTGAAACTCAATTGCAA+GGG 0.582844 1_4:+50671216 None:intergenic
ATTAGGGATGAATTCTGTTG+AGG 0.587352 1_4:-50673329 Msa0168230:CDS
CTCATTTGCAGAGACACCGC+GGG 0.591950 1_4:+50671102 None:intergenic
TACACCGGTGGAAGTTTCTG+AGG 0.595722 1_4:-50672960 Msa0168230:CDS
ATGTTAAGACGGCGATGGGG+AGG 0.595931 1_4:-50673531 Msa0168230:CDS
GCAGATGTTTGCGGTAGCCA+AGG 0.596662 1_4:-50672633 Msa0168230:CDS
TGGGAGTTACTGGATGCTGC+AGG 0.602801 1_4:+50670980 None:intergenic
AACATCTGCGCTGCTGACTG+AGG 0.607323 1_4:+50672647 None:intergenic
GCTCCCACAAGAGCAGCACT+CGG 0.608859 1_4:-50672846 Msa0168230:CDS
ATAGATGCTTGGGAAAGCCA+TGG 0.619820 1_4:-50671187 Msa0168230:CDS
ATTTGGAAAGTGCTGCTGAA+CGG 0.624374 1_4:-50672754 Msa0168230:CDS
AAGATGAAGCTCGACGAGCG+AGG 0.629333 1_4:+50674085 None:intergenic
TAAACTGTTCGGGATTGACG+TGG 0.629660 1_4:+50670944 None:intergenic
TGGGATGGAGGATCATGAGA+AGG 0.633696 1_4:-50673269 Msa0168230:CDS
GAAGCTTGATCGTGAAGGTG+AGG 0.637522 1_4:-50673800 Msa0168230:CDS
TTTAGCGGAAGCTTATGTTG+CGG 0.637589 1_4:-50673413 Msa0168230:CDS
CCCACAAGAGCAGCACTCGG+AGG 0.640444 1_4:-50672843 Msa0168230:CDS
AAGAGAACAGATTACACCGG+TGG 0.642489 1_4:-50672972 Msa0168230:CDS
CGAATATGATGATTGCTTTG+GGG 0.644617 1_4:-50673162 Msa0168230:CDS
TCAATTGTATCTGCATGATG+TGG 0.648031 1_4:+50672587 None:intergenic
ACTGTTCGGGATTGACGTGG+CGG 0.661175 1_4:+50670947 None:intergenic
TTGTCTAGGAGAGATTTGAG+TGG 0.661188 1_4:+50673963 None:intergenic
TTGATGGATGCATCGCGGAG+AGG 0.665367 1_4:+50674054 None:intergenic
TATGCCTCAGAAACTTCCAC+CGG 0.674657 1_4:+50672956 None:intergenic
GTGTATCTGCAAGAATAGGG+TGG 0.702061 1_4:-50672817 Msa0168230:CDS
CCTCATTTGCAGAGACACCG+CGG 0.706770 1_4:+50671101 None:intergenic
CTCTTGTGCTTGTATCAATG+GGG 0.708946 1_4:-50673069 Msa0168230:CDS
TAAAAGAGAACAGATTACAC+CGG 0.715171 1_4:-50672975 Msa0168230:CDS
TTATATCTACAACAATTTGG+GGG 0.722117 1_4:-50672693 Msa0168230:CDS
CTAATGTTAAGACGGCGATG+GGG 0.738436 1_4:-50673534 Msa0168230:CDS
TAGGGTTGATGGATGCATCG+CGG 0.740256 1_4:+50674049 None:intergenic
GGTAGCCAAGGATATCATGG+AGG 0.746203 1_4:-50672621 Msa0168230:CDS
GGTCTGAAGCTTGATCGTGA+AGG 0.746730 1_4:-50673805 Msa0168230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTATTTCATTATTTAGAT+CGG - chr1_4:50673251-50673270 Msa0168230:CDS 15.0%
!! CTTGAATTACAAAAATATTT+AGG - chr1_4:50673377-50673396 Msa0168230:CDS 15.0%
!! TTACAAAAATATTTAGGAAT+CGG - chr1_4:50673383-50673402 Msa0168230:CDS 15.0%
!! GTCTTAATTATGGTTTAAAT+AGG - chr1_4:50671180-50671199 Msa0168230:CDS 20.0%
!!! CAGTTTAAACATTTAACTTT+TGG - chr1_4:50672431-50672450 Msa0168230:intron 20.0%
!!! AACAATTATTTTGAGACTTA+AGG - chr1_4:50672491-50672510 Msa0168230:intron 20.0%
!!! ATAAAACTTAGTTTGATAGA+TGG + chr1_4:50672950-50672969 None:intergenic 20.0%
!! AATTCAAGTACATACTATAT+AGG + chr1_4:50673365-50673384 None:intergenic 20.0%
!!! TTCATGTTTTCCTAAAATAT+TGG - chr1_4:50673603-50673622 Msa0168230:CDS 20.0%
!! TGTGTATTATTATTAGGAAA+GGG + chr1_4:50673797-50673816 None:intergenic 20.0%
!! ATGTGTATTATTATTAGGAA+AGG + chr1_4:50673798-50673817 None:intergenic 20.0%
!!! AATTATATAAGCTAGCTTAT+TGG + chr1_4:50674010-50674029 None:intergenic 20.0%
!!! TTAGTTTTATTTGACTGAAT+TGG - chr1_4:50674045-50674064 Msa0168230:CDS 20.0%
! GGAAATTTCATTCAATGAAA+AGG - chr1_4:50671001-50671020 Msa0168230:CDS 25.0%
!! TTAATGGGTAGTCTTAATTA+TGG - chr1_4:50671170-50671189 Msa0168230:CDS 25.0%
! AATAGGTTTAGTGATAGTTT+AGG - chr1_4:50671197-50671216 Msa0168230:CDS 25.0%
! ATAGGTTTAGTGATAGTTTA+GGG - chr1_4:50671198-50671217 Msa0168230:CDS 25.0%
!! TAGTTTAGGGTATCTTAATA+AGG - chr1_4:50671211-50671230 Msa0168230:CDS 25.0%
! GTATCTTAATAAGGCTAATA+GGG - chr1_4:50671220-50671239 Msa0168230:CDS 25.0%
! TGGTTATATCTACAACAATT+TGG - chr1_4:50672159-50672178 Msa0168230:intron 25.0%
! GGTTATATCTACAACAATTT+GGG - chr1_4:50672160-50672179 Msa0168230:intron 25.0%
! GTTATATCTACAACAATTTG+GGG - chr1_4:50672161-50672180 Msa0168230:intron 25.0%
! TTATATCTACAACAATTTGG+GGG - chr1_4:50672162-50672181 Msa0168230:intron 25.0%
!!! ATTATTTTGAGACTTAAGGA+TGG - chr1_4:50672495-50672514 Msa0168230:intron 25.0%
! CTGCTTTCAAAAGAAAAATT+AGG - chr1_4:50672617-50672636 Msa0168230:CDS 25.0%
! TTTCATATAAGTAGCTATGT+TGG - chr1_4:50672736-50672755 Msa0168230:CDS 25.0%
!!! ATCAATGTTTTGCTTGTTTT+TGG - chr1_4:50673216-50673235 Msa0168230:CDS 25.0%
! AAAAATATTTAGGAATCGGA+AGG - chr1_4:50673387-50673406 Msa0168230:CDS 25.0%
!! AACTGTATATGTTTTTCCAA+CGG - chr1_4:50673575-50673594 Msa0168230:CDS 25.0%
GGTATCTTAATAAGGCTAAT+AGG - chr1_4:50671219-50671238 Msa0168230:CDS 30.0%
! TAATAAGGCTAATAGGGTTT+TGG - chr1_4:50671226-50671245 Msa0168230:intron 30.0%
! AATAAGGCTAATAGGGTTTT+GGG - chr1_4:50671227-50671246 Msa0168230:intron 30.0%
!!! TGTTGCGGTTTTGAATTTTA+AGG - chr1_4:50671457-50671476 Msa0168230:intron 30.0%
TCTAACGCCTTTAAACAATA+CGG + chr1_4:50671491-50671510 None:intergenic 30.0%
TTCTTGGGATTGTTTATAGT+GGG - chr1_4:50671567-50671586 Msa0168230:intron 30.0%
AAAAGTTTGCAGACTGTAAA+AGG - chr1_4:50671828-50671847 Msa0168230:intron 30.0%
AGGTGTTTAGAGATTTCTAT+TGG - chr1_4:50671848-50671867 Msa0168230:intron 30.0%
GGTGTTTAGAGATTTCTATT+GGG - chr1_4:50671849-50671868 Msa0168230:intron 30.0%
TAAAAGAGAACAGATTACAC+CGG - chr1_4:50671880-50671899 Msa0168230:intron 30.0%
GTTCATAGTTTCATATAGCA+TGG + chr1_4:50671936-50671955 None:intergenic 30.0%
TAACCAACTCCAAAATGTTT+GGG + chr1_4:50672145-50672164 None:intergenic 30.0%
ATAACCAACTCCAAAATGTT+TGG + chr1_4:50672146-50672165 None:intergenic 30.0%
AACCAAGAGAAACAATATCA+GGG + chr1_4:50672367-50672386 None:intergenic 30.0%
AAACCAAGAGAAACAATATC+AGG + chr1_4:50672368-50672387 None:intergenic 30.0%
!! TTGTTGATTCTGCAAACAAT+TGG - chr1_4:50672386-50672405 Msa0168230:intron 30.0%
!! ATTCTGCAAACAATTGGTTT+TGG - chr1_4:50672392-50672411 Msa0168230:intron 30.0%
!!! TTCTGCAAACAATTGGTTTT+GGG - chr1_4:50672393-50672412 Msa0168230:intron 30.0%
TCTCAAAATAATTGTTCCAC+TGG + chr1_4:50672487-50672506 None:intergenic 30.0%
AAGAAAAATTAGGCTGTGTT+TGG - chr1_4:50672627-50672646 Msa0168230:CDS 30.0%
TTATGAGCATAGCATGAATA+AGG + chr1_4:50672888-50672907 None:intergenic 30.0%
ATCTTGAGTACAAAGAGTTA+TGG - chr1_4:50673140-50673159 Msa0168230:CDS 30.0%
AGCACATTATCCAAAAACAA+GGG + chr1_4:50673515-50673534 None:intergenic 30.0%
AAGCACATTATCCAAAAACA+AGG + chr1_4:50673516-50673535 None:intergenic 30.0%
! GAAAACATGAATTTTTCCGT+TGG + chr1_4:50673594-50673613 None:intergenic 30.0%
GCTGCATGTGTATTATTATT+AGG + chr1_4:50673803-50673822 None:intergenic 30.0%
CTATTATGGGATTGATGTAA+CGG + chr1_4:50673851-50673870 None:intergenic 30.0%
AAAATATGCTGTTGTGAAAG+AGG + chr1_4:50673945-50673964 None:intergenic 30.0%
!!! CATATTTTGATGAATGCCTA+TGG - chr1_4:50673957-50673976 Msa0168230:CDS 30.0%
AAACTTTATACCAGTACCAT+AGG + chr1_4:50673976-50673995 None:intergenic 30.0%
! ATAAGCTAGCTTATTGGTAT+TGG + chr1_4:50674004-50674023 None:intergenic 30.0%
! CAGATTTTACAGATTTGTGT+AGG - chr1_4:50674079-50674098 Msa0168230:CDS 30.0%
! GAATGCTTTGAGCATTTCTT+CGG + chr1_4:50670973-50670992 None:intergenic 35.0%
TCATTCAATGAAAAGGAGCT+TGG - chr1_4:50671008-50671027 Msa0168230:CDS 35.0%
GGTTTAGCTGCATTGAAAAT+TGG - chr1_4:50671029-50671048 Msa0168230:CDS 35.0%
!! GCAAATTCAAGAGCTTTTTC+AGG + chr1_4:50671083-50671102 None:intergenic 35.0%
AACTGCAAACTCATAGCATA+AGG + chr1_4:50671152-50671171 None:intergenic 35.0%
TGCTATGAGTTTGCAGTTAA+TGG - chr1_4:50671154-50671173 Msa0168230:CDS 35.0%
GCTATGAGTTTGCAGTTAAT+GGG - chr1_4:50671155-50671174 Msa0168230:CDS 35.0%
!! GTGTTTGTGTTGATGATGTT+AGG - chr1_4:50671267-50671286 Msa0168230:intron 35.0%
! TGAGTTGGCTAATGTTAAGA+CGG - chr1_4:50671313-50671332 Msa0168230:intron 35.0%
! GATTAAGGAGATGACTTTTG+AGG - chr1_4:50671385-50671404 Msa0168230:intron 35.0%
!!! TGCGGTTTTGAATTTTAAGG+AGG - chr1_4:50671460-50671479 Msa0168230:intron 35.0%
AGATACATACGAAGCGATTA+GGG - chr1_4:50671510-50671529 Msa0168230:intron 35.0%
ATTAGGGATGAATTCTGTTG+AGG - chr1_4:50671526-50671545 Msa0168230:intron 35.0%
CTTCTTGGGATTGTTTATAG+TGG - chr1_4:50671566-50671585 Msa0168230:intron 35.0%
!! CGCAGAAGATTTTGAAGAAT+TGG - chr1_4:50671630-50671649 Msa0168230:intron 35.0%
GAAGAATTGGAATCTCAGTT+CGG - chr1_4:50671643-50671662 Msa0168230:intron 35.0%
TGCGAATATGATGATTGCTT+TGG - chr1_4:50671691-50671710 Msa0168230:intron 35.0%
GCGAATATGATGATTGCTTT+GGG - chr1_4:50671692-50671711 Msa0168230:intron 35.0%
CGAATATGATGATTGCTTTG+GGG - chr1_4:50671693-50671712 Msa0168230:intron 35.0%
GAAGTGTATCTGCAAGAATA+GGG - chr1_4:50672035-50672054 Msa0168230:intron 35.0%
TCAATTGTATCTGCATGATG+TGG + chr1_4:50672271-50672290 None:intergenic 35.0%
AGCATGTCAGAATCTTTCAA+AGG - chr1_4:50672291-50672310 Msa0168230:intron 35.0%
CAGAATCTTTCAAAGGCTTA+TGG - chr1_4:50672298-50672317 Msa0168230:intron 35.0%
TCAAAGGCTTATGGTGATAT+TGG - chr1_4:50672307-50672326 Msa0168230:intron 35.0%
TATGGTGATATTGGAAGGTA+TGG - chr1_4:50672316-50672335 Msa0168230:intron 35.0%
! TTCCCTGATATTGTTTCTCT+TGG - chr1_4:50672362-50672381 Msa0168230:intron 35.0%
TGGACATATACCTAATAGTG+TGG - chr1_4:50672451-50672470 Msa0168230:intron 35.0%
GGACATATACCTAATAGTGT+GGG - chr1_4:50672452-50672471 Msa0168230:intron 35.0%
AATCTGAATCCCACACTATT+AGG + chr1_4:50672464-50672483 None:intergenic 35.0%
TCTGACATAAAATAGAGTGC+AGG - chr1_4:50672549-50672568 Msa0168230:CDS 35.0%
CTGACATAAAATAGAGTGCA+GGG - chr1_4:50672550-50672569 Msa0168230:CDS 35.0%
TAAGAACTAGCAACAGTGTT+TGG + chr1_4:50672826-50672845 None:intergenic 35.0%
! TGTTTGGAATGGCTTATTTG+AGG + chr1_4:50672862-50672881 None:intergenic 35.0%
TCAAATAAGCCATTCCAAAC+AGG - chr1_4:50672861-50672880 Msa0168230:CDS 35.0%
AGGTAGACATGGAAACTAAA+AGG + chr1_4:50672912-50672931 None:intergenic 35.0%
AACTATATGAGAGGTAGACA+TGG + chr1_4:50672923-50672942 None:intergenic 35.0%
GATGGAAAGAACTATATGAG+AGG + chr1_4:50672932-50672951 None:intergenic 35.0%
GCAATTCCATGTGCAATTAT+GGG + chr1_4:50673172-50673191 None:intergenic 35.0%
AGCAATTCCATGTGCAATTA+TGG + chr1_4:50673173-50673192 None:intergenic 35.0%
ATATGCAATTGAGCTCGAAA+TGG + chr1_4:50673278-50673297 None:intergenic 35.0%
! AATTTAGACTTGGTTGTTCC+CGG - chr1_4:50673413-50673432 Msa0168230:CDS 35.0%
!!! TTGTTTCTGTCCCTTGTTTT+TGG - chr1_4:50673502-50673521 Msa0168230:CDS 35.0%
! GGCTGCAATTCCAATATTTT+AGG + chr1_4:50673616-50673635 None:intergenic 35.0%
CAATTAAAGAAAAAAGCCCG+CGG - chr1_4:50673737-50673756 Msa0168230:CDS 35.0%
TATTTGACTGAATTGGTTGC+TGG - chr1_4:50674052-50674071 Msa0168230:CDS 35.0%
! GTTTGTTGCGGGTGAAAATA+GGG + chr1_4:50670827-50670846 None:intergenic 40.0%
! GGTTGACATGGTTTGAAATG+GGG + chr1_4:50670859-50670878 None:intergenic 40.0%
! GGGTTGACATGGTTTGAAAT+GGG + chr1_4:50670860-50670879 None:intergenic 40.0%
AGGGTTGACATGGTTTGAAA+TGG + chr1_4:50670861-50670880 None:intergenic 40.0%
! TTTTTGGATGAGGGTTGACA+TGG + chr1_4:50670871-50670890 None:intergenic 40.0%
!! TTGAGTGGGTTTTTGGATGA+GGG + chr1_4:50670880-50670899 None:intergenic 40.0%
!! TTTGAGTGGGTTTTTGGATG+AGG + chr1_4:50670881-50670900 None:intergenic 40.0%
!! GAGAGATTTGAGTGGGTTTT+TGG + chr1_4:50670887-50670906 None:intergenic 40.0%
TGTCTAGGAGAGATTTGAGT+GGG + chr1_4:50670894-50670913 None:intergenic 40.0%
TTGTCTAGGAGAGATTTGAG+TGG + chr1_4:50670895-50670914 None:intergenic 40.0%
! TCGATGATTTTGCGTTGTCT+AGG + chr1_4:50670909-50670928 None:intergenic 40.0%
!!! CATTTCTTCGGTTGTTTTGG+CGG + chr1_4:50670961-50670980 None:intergenic 40.0%
! GAGCATTTCTTCGGTTGTTT+TGG + chr1_4:50670964-50670983 None:intergenic 40.0%
TTTGGGTAGGTTAGAGAATG+AGG - chr1_4:50671244-50671263 Msa0168230:intron 40.0%
TTGGGTAGGTTAGAGAATGA+GGG - chr1_4:50671245-50671264 Msa0168230:intron 40.0%
TCATGCTGTGCAATTTGAGT+TGG - chr1_4:50671298-50671317 Msa0168230:intron 40.0%
!! AGAGAATCTTCGGAAGTGTT+TGG - chr1_4:50671361-50671380 Msa0168230:intron 40.0%
!! TCGGAAGTGTTTGGAGATTA+AGG - chr1_4:50671370-50671389 Msa0168230:intron 40.0%
!! GACTTTTGAGGAAGATAGTG+AGG - chr1_4:50671397-50671416 Msa0168230:intron 40.0%
AGGAAGATAGTGAGGAGTTA+GGG - chr1_4:50671405-50671424 Msa0168230:intron 40.0%
ATAGTGAGGAGTTAGGGAAA+GGG - chr1_4:50671411-50671430 Msa0168230:intron 40.0%
GAAAGGGAATAGGGATTTAG+CGG - chr1_4:50671427-50671446 Msa0168230:intron 40.0%
TTTAGCGGAAGCTTATGTTG+CGG - chr1_4:50671442-50671461 Msa0168230:intron 40.0%
GAGATACATACGAAGCGATT+AGG - chr1_4:50671509-50671528 Msa0168230:intron 40.0%
! TGGGATTGTTTATAGTGGGA+TGG - chr1_4:50671571-50671590 Msa0168230:intron 40.0%
! GATTGTTTATAGTGGGATGG+AGG - chr1_4:50671574-50671593 Msa0168230:intron 40.0%
AGCTCTTGTGCTTGTATCAA+TGG - chr1_4:50671784-50671803 Msa0168230:intron 40.0%
GCTCTTGTGCTTGTATCAAT+GGG - chr1_4:50671785-50671804 Msa0168230:intron 40.0%
CTCTTGTGCTTGTATCAATG+GGG - chr1_4:50671786-50671805 Msa0168230:intron 40.0%
! GGAAGTGTATCTGCAAGAAT+AGG - chr1_4:50672034-50672053 Msa0168230:intron 40.0%
! GTTGTTGTTGCTTACAGGTA+AGG - chr1_4:50672060-50672079 Msa0168230:intron 40.0%
GAAGCAGGCTATTCCTTATT+TGG - chr1_4:50672084-50672103 Msa0168230:intron 40.0%
TCAGCAGCACTTTCCAAATA+AGG + chr1_4:50672100-50672119 None:intergenic 40.0%
!! ATTTGGAAAGTGCTGCTGAA+CGG - chr1_4:50672101-50672120 Msa0168230:intron 40.0%
!! AGCTTTGGTCCCAAACATTT+TGG - chr1_4:50672133-50672152 Msa0168230:intron 40.0%
AGAAACCTCCATGATATCCT+TGG + chr1_4:50672242-50672261 None:intergenic 40.0%
GATATCATGGAGGTTTCTCT+TGG - chr1_4:50672244-50672263 Msa0168230:intron 40.0%
AGGCTTATGGTGATATTGGA+AGG - chr1_4:50672311-50672330 Msa0168230:intron 40.0%
GAATAAGGACCTGTTTGGAA+TGG + chr1_4:50672873-50672892 None:intergenic 40.0%
AGCATGAATAAGGACCTGTT+TGG + chr1_4:50672878-50672897 None:intergenic 40.0%
GAGCACAGAAGAGAATATAG+TGG + chr1_4:50673002-50673021 None:intergenic 40.0%
! TCACCAAGAGAGTTCTGATT+TGG - chr1_4:50673020-50673039 Msa0168230:CDS 40.0%
ACACCAAATCAGAACTCTCT+TGG + chr1_4:50673026-50673045 None:intergenic 40.0%
! CGGAAGGTACAATTTAGACT+TGG - chr1_4:50673403-50673422 Msa0168230:CDS 40.0%
TCAACGTAACATACTGTGAG+TGG - chr1_4:50673468-50673487 Msa0168230:CDS 40.0%
GAAACTCAATTGCAAGGGAA+TGG + chr1_4:50673637-50673656 None:intergenic 40.0%
CTGCTGAAACTCAATTGCAA+GGG + chr1_4:50673642-50673661 None:intergenic 40.0%
AGCAGCAAGTTATAGATGCT+TGG - chr1_4:50673657-50673676 Msa0168230:CDS 40.0%
GCAGCAAGTTATAGATGCTT+GGG - chr1_4:50673658-50673677 Msa0168230:CDS 40.0%
TGCAAATGAGGTTCCTATGA+AGG - chr1_4:50673766-50673785 Msa0168230:CDS 40.0%
!! TATGTCAGGTTGGGAGTTAT+TGG + chr1_4:50673828-50673847 None:intergenic 40.0%
ATGTAACGGTATGTCAGGTT+GGG + chr1_4:50673837-50673856 None:intergenic 40.0%
GATTGATGTAACGGTATGTC+AGG + chr1_4:50673842-50673861 None:intergenic 40.0%
TGCTGCAGGTGTACTATTAT+GGG + chr1_4:50673864-50673883 None:intergenic 40.0%
ATGCTGCAGGTGTACTATTA+TGG + chr1_4:50673865-50673884 None:intergenic 40.0%
AGGATGTCTGCTAAACTGTT+CGG + chr1_4:50673925-50673944 None:intergenic 40.0%
TTGATGAATGCCTATGGTAC+TGG - chr1_4:50673963-50673982 Msa0168230:CDS 40.0%
!! GGTTTGTTGCGGGTGAAAAT+AGG + chr1_4:50670828-50670847 None:intergenic 45.0%
! GTTTGAAATGGGGTGTAGAG+GGG + chr1_4:50670849-50670868 None:intergenic 45.0%
! GGTTTGAAATGGGGTGTAGA+GGG + chr1_4:50670850-50670869 None:intergenic 45.0%
! TGGTTTGAAATGGGGTGTAG+AGG + chr1_4:50670851-50670870 None:intergenic 45.0%
! GCTCAAAGCATTCAGTGAGA+TGG - chr1_4:50670980-50670999 Msa0168230:CDS 45.0%
!!! AGGCTAATAGGGTTTTGGGT+AGG - chr1_4:50671231-50671250 Msa0168230:intron 45.0%
AATTGCACAGCATGAAGCAC+AGG + chr1_4:50671293-50671312 None:intergenic 45.0%
GCTAATGTTAAGACGGCGAT+GGG - chr1_4:50671320-50671339 Msa0168230:intron 45.0%
CTAATGTTAAGACGGCGATG+GGG - chr1_4:50671321-50671340 Msa0168230:intron 45.0%
!! AAGAGGCGCTAGAGAATCTT+CGG - chr1_4:50671351-50671370 Msa0168230:intron 45.0%
GAGGAAGATAGTGAGGAGTT+AGG - chr1_4:50671404-50671423 Msa0168230:intron 45.0%
GATAGTGAGGAGTTAGGGAA+AGG - chr1_4:50671410-50671429 Msa0168230:intron 45.0%
AGGAGTTAGGGAAAGGGAAT+AGG - chr1_4:50671417-50671436 Msa0168230:intron 45.0%
GGAGTTAGGGAAAGGGAATA+GGG - chr1_4:50671418-50671437 Msa0168230:intron 45.0%
GGCGCTTCCGTATTGTTTAA+AGG - chr1_4:50671481-50671500 Msa0168230:intron 45.0%
CGCATGATAGGAAGCTTCTT+GGG - chr1_4:50671552-50671571 Msa0168230:intron 45.0%
!! GGGGAAAGCGTTATGTAATC+AGG - chr1_4:50671805-50671824 Msa0168230:intron 45.0%
AAGAGAACAGATTACACCGG+TGG - chr1_4:50671883-50671902 Msa0168230:intron 45.0%
TATGCCTCAGAAACTTCCAC+CGG + chr1_4:50671902-50671921 None:intergenic 45.0%
!! GGAAGTTTCTGAGGCATACT+CGG - chr1_4:50671904-50671923 Msa0168230:intron 45.0%
TGCGATTTCGTTGCTGAAGA+GGG - chr1_4:50671967-50671986 Msa0168230:intron 45.0%
GTGTATCTGCAAGAATAGGG+TGG - chr1_4:50672038-50672057 Msa0168230:intron 45.0%
GAACGGTTGAAAGAGAGCTT+TGG - chr1_4:50672118-50672137 Msa0168230:intron 45.0%
!!! GGTCCCAAACATTTTGGAGT+TGG - chr1_4:50672139-50672158 Msa0168230:intron 45.0%
TTTACGAGAACCTCTGAACC+GGG + chr1_4:50673434-50673453 None:intergenic 45.0%
CTTTACGAGAACCTCTGAAC+CGG + chr1_4:50673435-50673454 None:intergenic 45.0%
GCTGCTGAAACTCAATTGCA+AGG + chr1_4:50673643-50673662 None:intergenic 45.0%
ATAGATGCTTGGGAAAGCCA+TGG - chr1_4:50673668-50673687 Msa0168230:CDS 45.0%
GATGTAACGGTATGTCAGGT+TGG + chr1_4:50673838-50673857 None:intergenic 45.0%
TAAACTGTTCGGGATTGACG+TGG + chr1_4:50673914-50673933 None:intergenic 45.0%
GGATGTCTGCTAAACTGTTC+GGG + chr1_4:50673924-50673943 None:intergenic 45.0%
ACGAGCGAGGTGAGAGAAAA+AGG + chr1_4:50670760-50670779 None:intergenic 50.0%
!! TAGGGTTGATGGATGCATCG+CGG + chr1_4:50670809-50670828 None:intergenic 50.0%
GCGGGTGAAAATAGGGTTGA+TGG + chr1_4:50670820-50670839 None:intergenic 50.0%
! GGTCTGAAGCTTGATCGTGA+AGG - chr1_4:50671050-50671069 Msa0168230:CDS 50.0%
GAAGCTTGATCGTGAAGGTG+AGG - chr1_4:50671055-50671074 Msa0168230:CDS 50.0%
GGCTAATGTTAAGACGGCGA+TGG - chr1_4:50671319-50671338 Msa0168230:intron 50.0%
CTGTTGAGGTTGCGCATGAT+AGG - chr1_4:50671540-50671559 Msa0168230:intron 50.0%
GCGCATGATAGGAAGCTTCT+TGG - chr1_4:50671551-50671570 Msa0168230:intron 50.0%
TGGGATGGAGGATCATGAGA+AGG - chr1_4:50671586-50671605 Msa0168230:intron 50.0%
!! GGCGTTGGAGCAGAATGTTT+TGG - chr1_4:50671607-50671626 Msa0168230:intron 50.0%
GGGAGATACGATGAAGCTGT+TGG - chr1_4:50671713-50671732 Msa0168230:intron 50.0%
TACACCGGTGGAAGTTTCTG+AGG - chr1_4:50671895-50671914 Msa0168230:intron 50.0%
CTGCGATTTCGTTGCTGAAG+AGG - chr1_4:50671966-50671985 Msa0168230:intron 50.0%
! GGGTGGTTGTTGTTGCTTAC+AGG - chr1_4:50672055-50672074 Msa0168230:intron 50.0%
GCTTACAGGTAAGGTGAAGC+AGG - chr1_4:50672069-50672088 Msa0168230:intron 50.0%
! GGGGGCAGCATATTTAGAGT+TGG - chr1_4:50672180-50672199 Msa0168230:intron 50.0%
TGCGGTAGCCAAGGATATCA+TGG - chr1_4:50672231-50672250 Msa0168230:intron 50.0%
GGTAGCCAAGGATATCATGG+AGG - chr1_4:50672234-50672253 Msa0168230:intron 50.0%
GTGTGGGATTCAGATTCCAG+TGG - chr1_4:50672468-50672487 Msa0168230:intron 50.0%
CCATGTGCAATTATGGGCTC+AGG + chr1_4:50673166-50673185 None:intergenic 50.0%
CCTGAGCCCATAATTGCACA+TGG - chr1_4:50673163-50673182 Msa0168230:CDS 50.0%
CGGTTCAGAGGTTCTCGTAA+AGG - chr1_4:50673433-50673452 Msa0168230:CDS 50.0%
CTTCTTCTGCACTTGCTCCA+TGG + chr1_4:50673688-50673707 None:intergenic 50.0%
GGAAAGGGAAGAGCCTTCAT+AGG + chr1_4:50673782-50673801 None:intergenic 50.0%
!! TGTGTCAGGTTGGGAGTTAC+TGG + chr1_4:50673888-50673907 None:intergenic 50.0%
AAGATGAAGCTCGACGAGCG+AGG + chr1_4:50670773-50670792 None:intergenic 55.0%
! TTGATGGATGCATCGCGGAG+AGG + chr1_4:50670804-50670823 None:intergenic 55.0%
!! GGTGTAGAGGGGTTTGTTGC+GGG + chr1_4:50670838-50670857 None:intergenic 55.0%
!! GGGTGTAGAGGGGTTTGTTG+CGG + chr1_4:50670839-50670858 None:intergenic 55.0%
ATGTTAAGACGGCGATGGGG+AGG - chr1_4:50671324-50671343 Msa0168230:intron 55.0%
! GGAGGATCATGAGAAGGCGT+TGG - chr1_4:50671592-50671611 Msa0168230:intron 55.0%
! AACATCTGCGCTGCTGACTG+AGG + chr1_4:50672211-50672230 None:intergenic 55.0%
GTCAGCAGCGCAGATGTTTG+CGG - chr1_4:50672213-50672232 Msa0168230:intron 55.0%
GCAGATGTTTGCGGTAGCCA+AGG - chr1_4:50672222-50672241 Msa0168230:intron 55.0%
CTTGGTTGTTCCCGGTTCAG+AGG - chr1_4:50673421-50673440 Msa0168230:CDS 55.0%
CTCATTTGCAGAGACACCGC+GGG + chr1_4:50673756-50673775 None:intergenic 55.0%
CCTCATTTGCAGAGACACCG+CGG + chr1_4:50673757-50673776 None:intergenic 55.0%
TGGGAGTTACTGGATGCTGC+AGG + chr1_4:50673878-50673897 None:intergenic 55.0%
ACTGTTCGGGATTGACGTGG+CGG + chr1_4:50673911-50673930 None:intergenic 55.0%
GCTCCCACAAGAGCAGCACT+CGG - chr1_4:50672009-50672028 Msa0168230:intron 60.0%
! CCTCCGAGTGCTGCTCTTGT+GGG + chr1_4:50672015-50672034 None:intergenic 60.0%
CCACAAGAGCAGCACTCGGA+GGG - chr1_4:50672013-50672032 Msa0168230:intron 60.0%
CCGCGGTGTCTCTGCAAATG+AGG - chr1_4:50673754-50673773 Msa0168230:CDS 60.0%
ACGTGGCGGTGTGTCAGGTT+GGG + chr1_4:50673897-50673916 None:intergenic 60.0%
GATTGACGTGGCGGTGTGTC+AGG + chr1_4:50673902-50673921 None:intergenic 60.0%
GGCGATGGGGAGGAGAGAAG+AGG - chr1_4:50671334-50671353 Msa0168230:intron 65.0%
CCCACAAGAGCAGCACTCGG+AGG - chr1_4:50672012-50672031 Msa0168230:intron 65.0%
! CCCTCCGAGTGCTGCTCTTG+TGG + chr1_4:50672016-50672035 None:intergenic 65.0%
GACGTGGCGGTGTGTCAGGT+TGG + chr1_4:50673898-50673917 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 50670732 50674145 50670732 ID=Msa0168230;Name=Msa0168230
chr1_4 mRNA 50670732 50674145 50670732 ID=Msa0168230-mRNA-1;Parent=Msa0168230;Name=Msa0168230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|211|633
chr1_4 exon 50670732 50671243 50670732 ID=Msa0168230-mRNA-1:exon:14908;Parent=Msa0168230-mRNA-1
chr1_4 exon 50672545 50674145 50672545 ID=Msa0168230-mRNA-1:exon:14907;Parent=Msa0168230-mRNA-1
chr1_4 CDS 50672545 50674145 50672545 ID=Msa0168230-mRNA-1:cds;Parent=Msa0168230-mRNA-1
chr1_4 CDS 50670943 50671243 50670943 ID=Msa0168230-mRNA-1:cds;Parent=Msa0168230-mRNA-1
chr1_4 three_prime_UTR 50670732 50670942 50670732 ID=Msa0168230-mRNA-1:three_prime_utr;Parent=Msa0168230-mRNA-1
Gene Sequence

>Msa0168230

ATGAGAAAACTCTTGAATTCTCTCACCTTTTTCTCTCACCTCGCTCGTCGAGCTTCATCTTCTCTCTCTCCTCTCCGCGATGCATCCATCAACCCTATTTTCACCCGCAACAAACCCCTCTACACCCCATTTCAAACCATGTCAACCCTCATCCAAAAACCCACTCAAATCTCTCCTAGACAACGCAAAATCATCGAAAAATCGCATCTTGAAGAAGCTTTTGAGTCCGCCAAAACAACCGAAGAAATGCTCAAAGCATTCAGTGAGATGGAAATTTCATTCAATGAAAAGGAGCTTGGTTTAGCTGCATTGAAAATTGGTCTGAAGCTTGATCGTGAAGGTGAGGATCCTGAAAAAGCTCTTGAATTTGCTAATAGAGTTTTGAAAGTGTTTGAAAATGAAAAGAAAGATTCTTTTCCTTATGCTATGAGTTTGCAGTTAATGGGTAGTCTTAATTATGGTTTAAATAGGTTTAGTGATAGTTTAGGGTATCTTAATAAGGCTAATAGGGTTTTGGGTAGGTTAGAGAATGAGGGTGTTTGTGTTGATGATGTTAGGCCTGTGCTTCATGCTGTGCAATTTGAGTTGGCTAATGTTAAGACGGCGATGGGGAGGAGAGAAGAGGCGCTAGAGAATCTTCGGAAGTGTTTGGAGATTAAGGAGATGACTTTTGAGGAAGATAGTGAGGAGTTAGGGAAAGGGAATAGGGATTTAGCGGAAGCTTATGTTGCGGTTTTGAATTTTAAGGAGGCGCTTCCGTATTGTTTAAAGGCGTTAGAGATACATACGAAGCGATTAGGGATGAATTCTGTTGAGGTTGCGCATGATAGGAAGCTTCTTGGGATTGTTTATAGTGGGATGGAGGATCATGAGAAGGCGTTGGAGCAGAATGTTTTGGCGCAGAAGATTTTGAAGAATTGGAATCTCAGTTCGGATTTGTTGCGCGCTGAAGTTGATGCTGCGAATATGATGATTGCTTTGGGGAGATACGATGAAGCTGTTGGTACTTTGAAGAACGTTGTGAATCAGACTGAGAAAGATAGTGAGACTCGAGCTCTTGTGCTTGTATCAATGGGGAAAGCGTTATGTAATCAGGAAAAGTTTGCAGACTGTAAAAGGTGTTTAGAGATTTCTATTGGGATTCTTGATAAAAGAGAACAGATTACACCGGTGGAAGTTTCTGAGGCATACTCGGAGATATCCATGCTATATGAAACTATGAACGAGTTCGAAACTGCGATTTCGTTGCTGAAGAGGGCACTAGCTTTGCTCGAGAAGCTCCCACAAGAGCAGCACTCGGAGGGAAGTGTATCTGCAAGAATAGGGTGGTTGTTGTTGCTTACAGGTAAGGTGAAGCAGGCTATTCCTTATTTGGAAAGTGCTGCTGAACGGTTGAAAGAGAGCTTTGGTCCCAAACATTTTGGAGTTGGTTATATCTACAACAATTTGGGGGCAGCATATTTAGAGTTGGATAGACCTCAGTCAGCAGCGCAGATGTTTGCGGTAGCCAAGGATATCATGGAGGTTTCTCTTGGTCCACATCATGCAGATACAATTGAAGCATGTCAGAATCTTTCAAAGGCTTATGGTGATATTGGAAGCCATTCCCTTGCAATTGAGTTTCAGCAGCAAGTTATAGATGCTTGGGAAAGCCATGGAGCAAGTGCAGAAGAAGAACTAAGAGAAGCTCAGCGACTACTCGAACAATTAAAGAAAAAAGCCCGCGGTGTCTCTGCAAATGAGGTTCCTATGAAGGCTCTTCCCTTTCCTAATAATAATACACATGCAGCATCCAATAACTCCCAACCTGACATACCGTTACATCAATCCCATAATAGTACACCTGCAGCATCCAGTAACTCCCAACCTGACACACCGCCACGTCAATCCCGAACAGTTTAG

Protein sequence

>Msa0168230

MRKLLNSLTFFSHLARRASSSLSPLRDASINPIFTRNKPLYTPFQTMSTLIQKPTQISPRQRKIIEKSHLEEAFESAKTTEEMLKAFSEMEISFNEKELGLAALKIGLKLDREGEDPEKALEFANRVLKVFENEKKDSFPYAMSLQLMGSLNYGLNRFSDSLGYLNKANRVLGRLENEGVCVDDVRPVLHAVQFELANVKTAMGRREEALENLRKCLEIKEMTFEEDSEELGKGNRDLAEAYVAVLNFKEALPYCLKALEIHTKRLGMNSVEVAHDRKLLGIVYSGMEDHEKALEQNVLAQKILKNWNLSSDLLRAEVDAANMMIALGRYDEAVGTLKNVVNQTEKDSETRALVLVSMGKALCNQEKFADCKRCLEISIGILDKREQITPVEVSEAYSEISMLYETMNEFETAISLLKRALALLEKLPQEQHSEGSVSARIGWLLLLTGKVKQAIPYLESAAERLKESFGPKHFGVGYIYNNLGAAYLELDRPQSAAQMFAVAKDIMEVSLGPHHADTIEACQNLSKAYGDIGSHSLAIEFQQQVIDAWESHGASAEEELREAQRLLEQLKKKARGVSANEVPMKALPFPNNNTHAASNNSQPDIPLHQSHNSTPAASSNSQPDTPPRQSRTV*