AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0711780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711780 MtrunA17_Chr5g0396231 94.831 503 23 2 1 501 1 502 0.0 895
Msa0711780 MtrunA17_Chr4g0014351 57.143 119 50 1 381 498 750 868 1.02e-38 150
Msa0711780 MtrunA17_Chr4g0014351 37.220 223 121 5 1 217 1 210 1.79e-32 132
Msa0711780 MtrunA17_Chr4g0052911 35.593 177 88 7 333 496 74 237 1.07e-21 94.0
Msa0711780 MtrunA17_Chr8g0339171 53.684 95 37 4 408 498 46 137 1.55e-19 85.5
Msa0711780 MtrunA17_Chr8g0382711 33.333 183 101 7 330 498 31 206 6.56e-18 82.4
Msa0711780 MtrunA17_Chr1g0179681 34.286 140 79 4 369 499 109 244 5.82e-16 77.8
Msa0711780 MtrunA17_Chr8g0352971 46.316 95 48 2 405 496 10 104 8.22e-15 76.6
Msa0711780 MtrunA17_Chr8g0377771 49.438 89 42 3 410 496 54 141 9.32e-15 77.0
Msa0711780 MtrunA17_Chr8g0339141 48.315 89 43 3 410 496 56 143 1.05e-14 76.6
Msa0711780 MtrunA17_Chr7g0234801 47.126 87 43 3 412 496 52 137 1.31e-14 76.3
Msa0711780 MtrunA17_Chr4g0033841 37.857 140 65 6 370 500 97 223 1.65e-12 67.0
Msa0711780 MtrunA17_Chr5g0435521 40.659 91 48 3 415 501 35 123 3.33e-12 65.5
Msa0711780 MtrunA17_Chr1g0179231 36.364 121 44 3 412 499 96 216 1.58e-11 63.9
Msa0711780 MtrunA17_Chr7g0255551 39.773 88 48 2 412 496 39 124 3.67e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711780 AT4G25340.1 47.776 517 212 16 1 499 1 477 4.08e-117 353
Msa0711780 AT4G25340.2 45.455 473 203 15 1 457 1 434 1.60e-91 286
Msa0711780 AT5G05420.1 64.486 107 38 0 392 498 36 142 5.89e-44 152
Msa0711780 AT3G12340.3 51.562 128 61 1 372 498 250 377 8.50e-36 137
Msa0711780 AT3G12340.2 51.562 128 61 1 372 498 250 377 8.50e-36 137
Msa0711780 AT3G12340.1 51.562 128 61 1 372 498 371 498 1.31e-34 136
Msa0711780 AT3G25220.1 51.546 97 40 4 408 500 48 141 2.21e-19 85.5
Msa0711780 AT5G48580.1 50.526 95 40 4 408 498 48 139 7.52e-19 84.3
Msa0711780 AT5G45680.1 42.500 120 53 5 391 497 90 206 1.14e-18 85.1
Msa0711780 AT3G25230.1 51.685 89 36 4 412 496 57 142 5.57e-16 81.3
Msa0711780 AT3G25230.2 51.685 89 36 4 412 496 57 142 7.24e-16 80.9
Msa0711780 AT5G48570.1 50.000 90 38 4 412 497 65 151 1.03e-15 80.5
Msa0711780 AT3G10060.1 34.194 155 87 5 354 499 69 217 3.54e-15 75.5
Msa0711780 AT3G55520.2 41.758 91 47 3 415 501 35 123 3.24e-13 68.9
Msa0711780 AT3G55520.3 41.758 91 47 3 415 501 35 123 3.24e-13 68.9
Msa0711780 AT3G55520.1 41.758 91 47 3 415 501 35 123 3.24e-13 68.9
Msa0711780 AT2G43560.1 38.261 115 62 4 392 500 106 217 3.79e-13 69.3
Msa0711780 AT2G43560.2 38.136 118 64 4 389 500 47 161 3.93e-12 65.1

Find 139 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCGAAGCATCCATCTTTC+TGG 0.194721 5_1:+3661940 Msa0711780:CDS
CACTGACGACAATGGGATTC+TGG 0.208619 5_1:+3660508 Msa0711780:exon
TTAAGGAATCATTAAATTAA+AGG 0.223146 5_1:+3665619 Msa0711780:three_prime_UTR
AGCTTCTCCTTCAGCCTCTT+TGG 0.225392 5_1:-3664437 None:intergenic
TTTCTTCAGGGATGAGGGTT+GGG 0.234866 5_1:+3665064 Msa0711780:intron
AGGTGATTGCAGAAATATTA+AGG 0.242186 5_1:+3665602 Msa0711780:three_prime_UTR
AGCATTCTTCAGTGCGCTTC+TGG 0.249781 5_1:+3661808 Msa0711780:CDS
ACTTACAATTCCACCATCTA+TGG 0.251042 5_1:+3665098 Msa0711780:CDS
CAGCTTCCAGTTGTCATTAG+AGG 0.251117 5_1:+3663190 Msa0711780:CDS
TCTGAATTTGATAGTGAAAA+TGG 0.258524 5_1:+3662195 Msa0711780:CDS
CATACCAAGTCGAAACTTAA+AGG 0.287309 5_1:-3664832 None:intergenic
TTGCCGCTTCGGCTTCGTTT+TGG 0.304667 5_1:+3665359 Msa0711780:three_prime_UTR
CCTTTGTCGCTAGACTTTAC+AGG 0.307524 5_1:+3665424 Msa0711780:three_prime_UTR
GACGACAATCAGCCTGAAAA+TGG 0.313986 5_1:+3663094 Msa0711780:CDS
TCCAGACAACCAACATTATA+CGG 0.330975 5_1:-3665529 None:intergenic
TTGGGAGAGGACGTGGGAAC+TGG 0.337787 5_1:+3662159 Msa0711780:CDS
AAAATATTTGACTCGTGTAT+TGG 0.338581 5_1:+3664801 Msa0711780:CDS
TGGGATTACAATTAGCGTTT+TGG 0.341341 5_1:-3660411 None:intergenic
GGATAGGTTCTCACGTTAGA+TGG 0.341955 5_1:-3664547 None:intergenic
GGTTATAGAGGACATATCTA+TGG 0.345544 5_1:+3664579 Msa0711780:CDS
AAATGAAATTCAACTTCGTC+AGG 0.350910 5_1:-3660480 None:intergenic
AGCAAAGCAATCGAAGAAAA+AGG 0.355166 5_1:+3663126 Msa0711780:CDS
AACCAGAAAGATGGATGCTT+CGG 0.367662 5_1:-3661942 None:intergenic
TCTCTCGTGTCGTCGTCATC+TGG 0.377480 5_1:-3661973 None:intergenic
ACAATGCAAAAGTGATTCAT+TGG 0.381195 5_1:+3662140 Msa0711780:intron
TGCAAACCTCGCATATTCAT+TGG 0.384699 5_1:+3665401 Msa0711780:three_prime_UTR
GGATGACTTGGTGGCATTCT+CGG 0.384813 5_1:+3661909 Msa0711780:CDS
GGAGTATACCACAAAATTCA+TGG 0.385779 5_1:+3665284 Msa0711780:CDS
TGCCCTTTGAATCTTAAGTT+TGG 0.390870 5_1:+3661883 Msa0711780:CDS
GCTTTGTCTGAAGTGGAAAT+CGG 0.394739 5_1:-3663256 None:intergenic
ACAATTTCATACCCCATAGA+TGG 0.396140 5_1:-3665111 None:intergenic
TCCGTATAATGTTGGTTGTC+TGG 0.398823 5_1:+3665528 Msa0711780:three_prime_UTR
TGCAATCACCTAAAACATAA+AGG 0.401860 5_1:-3665590 None:intergenic
ACTGACGACAATGGGATTCT+GGG 0.403272 5_1:+3660509 Msa0711780:exon
GTTGAGTTGGTTGGCGTTGA+AGG 0.403304 5_1:+3665319 Msa0711780:CDS
GGGTGGGATGTTGGCGTCAA+TGG 0.405209 5_1:+3664956 Msa0711780:CDS
AAATTAAAGGAATAATTGTA+TGG 0.411566 5_1:+3665632 Msa0711780:three_prime_UTR
GGGCACGTCTCAACCTTGTT+TGG 0.412493 5_1:-3661865 None:intergenic
TCCTCTATAACCAATCCATT+TGG 0.417967 5_1:-3664568 None:intergenic
TTGCATGAGAGACATTGTTC+TGG 0.419904 5_1:-3664230 None:intergenic
TGAAAACCCTTACTCATCAT+TGG 0.420043 5_1:-3664277 None:intergenic
ACTTTACAGGAGCCGAAGTT+TGG 0.422203 5_1:+3665437 Msa0711780:three_prime_UTR
TTGGTTATTTGAAGGTGCTT+CGG 0.423162 5_1:-3660392 None:intergenic
TCCACATCGTCAGTACTATA+CGG 0.427484 5_1:-3660672 None:intergenic
GGTTGTCTGGAGTAATTTGA+TGG 0.431019 5_1:+3665541 Msa0711780:three_prime_UTR
TTGTCACCTCTAATGACAAC+TGG 0.439166 5_1:-3663196 None:intergenic
AGATTTAGCTTTGTCTGAAG+TGG 0.441957 5_1:-3663263 None:intergenic
TTCTTCAGGGATGAGGGTTG+GGG 0.443024 5_1:+3665065 Msa0711780:intron
GGTTCTCACGTTAGATGGCT+TGG 0.444994 5_1:-3664542 None:intergenic
CATGCAAAGGATGGAGATGA+TGG 0.445035 5_1:+3664246 Msa0711780:CDS
TGATTCATTGGGAGAGGACG+TGG 0.450717 5_1:+3662152 Msa0711780:CDS
GCAAATAGTAACTCTAAATT+GGG 0.452028 5_1:+3660369 None:intergenic
GATGGCAAAAGAGCTGATCT+TGG 0.455967 5_1:+3664610 Msa0711780:CDS
CAGGTCAGTGTTAGATATAC+CGG 0.457744 5_1:+3664759 Msa0711780:intron
ATACCAAGTCGAAACTTAAA+GGG 0.462033 5_1:-3664831 None:intergenic
TCCAAATGGATTGGTTATAG+AGG 0.465197 5_1:+3664567 Msa0711780:CDS
ACCAGAAAGATGGATGCTTC+GGG 0.470599 5_1:-3661941 None:intergenic
CTAAAATTTCAGGCTACTCT+AGG 0.474162 5_1:+3661763 Msa0711780:intron
AGGTGACAATAAGTTTGTCT+TGG 0.479792 5_1:+3663210 Msa0711780:CDS
ATATTTGATGTTGAGTTGGT+TGG 0.480042 5_1:+3665310 Msa0711780:CDS
CTATACGGAACCGGATTGCC+AGG 0.485280 5_1:-3660657 None:intergenic
GCACAAAATAACCAGAAAGA+TGG 0.487484 5_1:-3661951 None:intergenic
CTTACAATTCCACCATCTAT+GGG 0.490011 5_1:+3665099 Msa0711780:CDS
GTCATCAAGGGGTGGGATGT+TGG 0.490964 5_1:+3664947 Msa0711780:CDS
GCTTATATTTGATGTTGAGT+TGG 0.494265 5_1:+3665306 Msa0711780:CDS
AACGTGAGAACCTATCCAAA+TGG 0.495137 5_1:+3664553 Msa0711780:CDS
AAGAGCTGATCTTGGAAAGA+AGG 0.496054 5_1:+3664618 Msa0711780:CDS
CTTTGTCTGAAGTGGAAATC+GGG 0.496076 5_1:-3663255 None:intergenic
TTTCTTTGTCCGTATAATGT+TGG 0.498430 5_1:+3665520 Msa0711780:three_prime_UTR
TGAAGTGAAACCTGGCAATC+CGG 0.499808 5_1:+3660647 Msa0711780:CDS
TTAGATGGCTTGGCTTCAGT+TGG 0.504936 5_1:-3664532 None:intergenic
TCACCAAACTTAAGATTCAA+AGG 0.507727 5_1:-3661886 None:intergenic
CTCAACCTTGTTTGGCAGCA+AGG 0.509715 5_1:-3661857 None:intergenic
TGGGAGAGGACGTGGGAACT+GGG 0.512185 5_1:+3662160 Msa0711780:CDS
AACTGGGAAATCCAAGAAGA+AGG 0.515282 5_1:+3663336 Msa0711780:CDS
GTGTTCCTTGCTGCCAAACA+AGG 0.525261 5_1:+3661852 Msa0711780:CDS
TTTCAGGCTACTCTAGGCGT+TGG 0.525313 5_1:+3661769 Msa0711780:intron
TATAACCAATCCATTTGGAT+AGG 0.528390 5_1:-3664563 None:intergenic
ACAAAATACCTCCACTACTC+CGG 0.530163 5_1:-3662275 None:intergenic
CAATGCAAAAGTGATTCATT+GGG 0.534185 5_1:+3662141 Msa0711780:intron
GTGGTGAGTGTCAATAATTA+AGG 0.537070 5_1:-3665711 None:intergenic
ATGAGAGACATTGTTCTGGT+TGG 0.538743 5_1:-3664226 None:intergenic
GCACCCTTTAAGTTTCGACT+TGG 0.542842 5_1:+3664828 Msa0711780:CDS
AGACCAAAACGAAGCCGAAG+CGG 0.546308 5_1:-3665362 None:intergenic
GTGAATTTCCTACCAAACTT+CGG 0.546783 5_1:-3665449 None:intergenic
GTTTGGTGAGGATGACTTGG+TGG 0.548655 5_1:+3661900 Msa0711780:CDS
TGTACACATCTTCGCCAGTC+CGG 0.549126 5_1:+3662256 Msa0711780:CDS
CCTAAAACATAAAGGAATGG+AGG 0.549533 5_1:-3665582 None:intergenic
AAGGCTGAAACAGAAACAAA+AGG 0.552836 5_1:+3663295 Msa0711780:CDS
TCGTCAGTACTATACGGAAC+CGG 0.556211 5_1:-3660666 None:intergenic
CACCAAACTTAAGATTCAAA+GGG 0.556434 5_1:-3661885 None:intergenic
GTTATAGAGGACATATCTAT+GGG 0.558134 5_1:+3664580 Msa0711780:CDS
CAAAAGTGATTCATTGGGAG+AGG 0.559260 5_1:+3662146 Msa0711780:intron
GAGAACCTATCCAAATGGAT+TGG 0.560765 5_1:+3664558 Msa0711780:CDS
TCTTCGCCAGTCCGGAGTAG+TGG 0.561425 5_1:+3662264 Msa0711780:CDS
TAAGTTTGGTGAGGATGACT+TGG 0.562154 5_1:+3661897 Msa0711780:CDS
GGAGGAAAGTGCTCATGTAA+AGG 0.563185 5_1:+3664152 Msa0711780:CDS
TCACCTAAAACATAAAGGAA+TGG 0.566530 5_1:-3665585 None:intergenic
AGGATGAGCAGCTGCAAGAT+GGG 0.567860 5_1:+3663413 Msa0711780:CDS
AGGTGTAGGACAAGTCATCA+AGG 0.569087 5_1:+3664934 Msa0711780:intron
TTGGTGGCATTCTCGGTCGT+CGG 0.569677 5_1:+3661916 Msa0711780:CDS
TCAGGGATTGAAGTGAAACC+TGG 0.572044 5_1:+3660639 Msa0711780:intron
AATAATAAATGCAATTTGTG+TGG 0.574053 5_1:-3665730 None:intergenic
CTAAAACATAAAGGAATGGA+GGG 0.574988 5_1:-3665581 None:intergenic
TTTGAATCTTAAGTTTGGTG+AGG 0.577124 5_1:+3661888 Msa0711780:CDS
CAAGTTGAAAGATCATGGTA+AGG 0.578952 5_1:+3664131 Msa0711780:CDS
AATGTCTCTCATGCAAAGGA+TGG 0.579761 5_1:+3664237 Msa0711780:CDS
CCTGTAAAGTCTAGCGACAA+AGG 0.580442 5_1:-3665424 None:intergenic
TTGGAAAGTGAAGATGAAGA+TGG 0.586293 5_1:+3663229 Msa0711780:CDS
AGCTAAATCTGAGTCTCAGA+AGG 0.587477 5_1:+3663276 Msa0711780:CDS
GATATGGTGACAAACGTGTT+GGG 0.590168 5_1:+3665263 Msa0711780:intron
AGGAAAGCTTCACGTCACTC+AGG 0.592401 5_1:+3660695 Msa0711780:CDS
ATATCTATGGGCAAACCAGA+TGG 0.595038 5_1:+3664592 Msa0711780:CDS
GGTGTAGGACAAGTCATCAA+GGG 0.596781 5_1:+3664935 Msa0711780:intron
AATGAAATTCAACTTCGTCA+GGG 0.600359 5_1:-3660479 None:intergenic
GAGGATGAGCAGCTGCAAGA+TGG 0.601018 5_1:+3663412 Msa0711780:CDS
GGACGTGGGAACTGGGTCAG+AGG 0.603866 5_1:+3662167 Msa0711780:CDS
AGGACAAGTCATCAAGGGGT+GGG 0.609520 5_1:+3664940 Msa0711780:CDS
ATACCTCCACTACTCCGGAC+TGG 0.610928 5_1:-3662270 None:intergenic
GAACAATGTCTCTCATGCAA+AGG 0.611604 5_1:+3664233 Msa0711780:CDS
TACAGGAGCCGAAGTTTGGT+AGG 0.613619 5_1:+3665441 Msa0711780:three_prime_UTR
TAGGACAAGTCATCAAGGGG+TGG 0.614183 5_1:+3664939 Msa0711780:CDS
TCGCCAGTCCGGAGTAGTGG+AGG 0.614191 5_1:+3662267 Msa0711780:CDS
GTTGAAAGATCATGGTAAGG+AGG 0.614660 5_1:+3664134 Msa0711780:CDS
ATGCAAAGGATGGAGATGAT+GGG 0.616446 5_1:+3664247 Msa0711780:CDS
ATTTCATACCCCATAGATGG+TGG 0.621077 5_1:-3665108 None:intergenic
AGATATGGTGACAAACGTGT+TGG 0.627092 5_1:+3665262 Msa0711780:intron
TCCGTATAGTACTGACGATG+TGG 0.632230 5_1:+3660671 Msa0711780:CDS
TCTAGGCGTTGGTCCATCGA+CGG 0.649382 5_1:+3661780 Msa0711780:CDS
TATAGTACTGACGATGTGGA+AGG 0.650155 5_1:+3660675 Msa0711780:CDS
CTGACGACAATGGGATTCTG+GGG 0.658715 5_1:+3660510 Msa0711780:exon
AAAAGTTCAAGCTGTCGATG+AGG 0.663434 5_1:+3663393 Msa0711780:CDS
GTGTAGGACAAGTCATCAAG+GGG 0.668593 5_1:+3664936 Msa0711780:CDS
GCCAGATGAAAAGTCTGAGG+AGG 0.674614 5_1:+3664191 Msa0711780:CDS
CAAAGGCCAATGAATATGCG+AGG 0.674978 5_1:-3665407 None:intergenic
TGTGCCAGATGAAAAGTCTG+AGG 0.679651 5_1:+3664188 Msa0711780:CDS
GATTCATTGGGAGAGGACGT+GGG 0.690481 5_1:+3662153 Msa0711780:CDS
GCTCACTTGAAAGAGAAACC+CGG 0.694878 5_1:+3663157 Msa0711780:CDS
TTACAATTCCACCATCTATG+GGG 0.701878 5_1:+3665100 Msa0711780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATTTATTTATGAATC+CGG - chr5_1:3662453-3662472 None:intergenic 10.0%
!! CAATTATTATTTATCATCTA+AGG - chr5_1:3660960-3660979 None:intergenic 15.0%
!! CAAATAAATGCATATTATAT+AGG - chr5_1:3661630-3661649 None:intergenic 15.0%
!! ACGTTAACTAAAATATTATA+GGG + chr5_1:3662502-3662521 Msa0711780:intron 15.0%
!! TAATTACTAAACACTTTAAT+AGG - chr5_1:3662604-3662623 None:intergenic 15.0%
!!! TTAAATTTTAAAAATGTTCC+TGG - chr5_1:3662637-3662656 None:intergenic 15.0%
!!! TTTGAAAATTCAAAAACTTT+TGG + chr5_1:3663595-3663614 Msa0711780:intron 15.0%
!!! CAATTTTTAAAAAACAGATT+TGG - chr5_1:3663975-3663994 None:intergenic 15.0%
!!! ATTTATCTTTTATTTTCTTC+AGG + chr5_1:3665051-3665070 Msa0711780:intron 15.0%
!!! TTTATCTTTTATTTTCTTCA+GGG + chr5_1:3665052-3665071 Msa0711780:intron 15.0%
!! TTAAGGAATCATTAAATTAA+AGG + chr5_1:3665619-3665638 Msa0711780:three_prime_UTR 15.0%
!! AAATTAAAGGAATAATTGTA+TGG + chr5_1:3665632-3665651 Msa0711780:three_prime_UTR 15.0%
!!! AATTTTGAGAAAAAAAATCA+AGG - chr5_1:3665684-3665703 None:intergenic 15.0%
!! AAACAGAAATAAGTGATTAA+CGG - chr5_1:3660561-3660580 None:intergenic 20.0%
!! TGATAAGTTCAAATACAAAA+CGG - chr5_1:3660622-3660641 None:intergenic 20.0%
!!! TTTTGTATTTGAACTTATCA+GGG + chr5_1:3660622-3660641 Msa0711780:intron 20.0%
!!! TGATGTTTTTACTGTTTATT+AGG + chr5_1:3660823-3660842 Msa0711780:intron 20.0%
!!! GATGTTTTTACTGTTTATTA+GGG + chr5_1:3660824-3660843 Msa0711780:intron 20.0%
!! AATTGAAGTATATGCATTAT+TGG + chr5_1:3660980-3660999 Msa0711780:intron 20.0%
!! GAATTAATGTGTTGAATTTA+TGG - chr5_1:3661134-3661153 None:intergenic 20.0%
!! TAAATTCAACACATTAATTC+TGG + chr5_1:3661134-3661153 Msa0711780:intron 20.0%
!! CACGTTAACTAAAATATTAT+AGG + chr5_1:3662501-3662520 Msa0711780:intron 20.0%
!! CGTTAACTAAAATATTATAG+GGG + chr5_1:3662503-3662522 Msa0711780:intron 20.0%
!!! AGTAATTAATTTAGTTTTCC+AGG + chr5_1:3662616-3662635 Msa0711780:intron 20.0%
!! AAAGAAAACTGAAAAATACA+AGG + chr5_1:3662945-3662964 Msa0711780:intron 20.0%
!! AATAAATAATCCAGATACTT+TGG + chr5_1:3663528-3663547 Msa0711780:intron 20.0%
!! ATAAATAATCCAGATACTTT+GGG + chr5_1:3663529-3663548 Msa0711780:intron 20.0%
!!! AAAATTCAAAAACTTTTGCT+AGG + chr5_1:3663599-3663618 Msa0711780:intron 20.0%
!!! AAAATTCAAAAACTTTTGGT+AGG + chr5_1:3663697-3663716 Msa0711780:intron 20.0%
!!! TTTGGTACATTTTTCATTAA+TGG + chr5_1:3663817-3663836 Msa0711780:intron 20.0%
!! CAATATTGTACATTTCTAAA+TGG - chr5_1:3663861-3663880 None:intergenic 20.0%
!! GAATTAAAAGACAAACTATT+TGG - chr5_1:3663947-3663966 None:intergenic 20.0%
!! AAGAAACTGGATTATAAAAT+AGG - chr5_1:3664713-3664732 None:intergenic 20.0%
!! CAAACGATAAATATAGATAA+AGG - chr5_1:3664913-3664932 None:intergenic 20.0%
!! AATCTTATTACGTTATTACT+AGG - chr5_1:3664996-3665015 None:intergenic 20.0%
!! AATAATAAATGCAATTTGTG+TGG - chr5_1:3665733-3665752 None:intergenic 20.0%
!!! CATTTTTAGGGTTTAAAGAA+AGG + chr5_1:3660446-3660465 Msa0711780:five_prime_UTR 25.0%
!! GTTTTGTATTTGAACTTATC+AGG + chr5_1:3660621-3660640 Msa0711780:intron 25.0%
! GTATATCCATGTAATTCTAT+AGG - chr5_1:3661028-3661047 None:intergenic 25.0%
! ACGACAAAATTATCACAAAA+AGG - chr5_1:3661188-3661207 None:intergenic 25.0%
!! TGATAATTTTGTCGTTGAAT+TGG + chr5_1:3661193-3661212 Msa0711780:intron 25.0%
!! AATAATTTCACGACTTTTCT+TGG + chr5_1:3661250-3661269 Msa0711780:intron 25.0%
! AAGTCAATAACTAAAAACCA+AGG - chr5_1:3661513-3661532 None:intergenic 25.0%
!!! TGACAAATCATTTTTATCAG+CGG - chr5_1:3661557-3661576 None:intergenic 25.0%
! AAATCATATTGGACTTCAAA+AGG - chr5_1:3661703-3661722 None:intergenic 25.0%
!! TGAAGTCCAATATGATTTTA+TGG + chr5_1:3661705-3661724 Msa0711780:intron 25.0%
! TCGTAACCATAAAATCATAT+TGG - chr5_1:3661714-3661733 None:intergenic 25.0%
! ACAAAAGCTAGTTATTCAAA+AGG - chr5_1:3662015-3662034 None:intergenic 25.0%
!!! TTTGAATAACTAGCTTTTGT+TGG + chr5_1:3662015-3662034 Msa0711780:intron 25.0%
!!! TCTGAATTTGATAGTGAAAA+TGG + chr5_1:3662195-3662214 Msa0711780:CDS 25.0%
! TTATATGTATGAGCATTTGA+TGG - chr5_1:3662325-3662344 None:intergenic 25.0%
! TGGAAAAAACATCATGTTAT+TGG - chr5_1:3662393-3662412 None:intergenic 25.0%
!!! GATGTTTTTTCCAGTAAATT+TGG + chr5_1:3662400-3662419 Msa0711780:intron 25.0%
! TTAATAGGATTAAGATTCCT+AGG - chr5_1:3662589-3662608 None:intergenic 25.0%
! TTATTCCCATGTTAAAGTAT+GGG - chr5_1:3662751-3662770 None:intergenic 25.0%
! TTTATTCCCATGTTAAAGTA+TGG - chr5_1:3662752-3662771 None:intergenic 25.0%
! TTTAACATGGGAATAAAAAG+TGG + chr5_1:3662755-3662774 Msa0711780:intron 25.0%
!! AGTTTTCATAAATTATGCCT+AGG - chr5_1:3662795-3662814 None:intergenic 25.0%
! ATGAAAACTTGAAACAAACA+TGG + chr5_1:3662806-3662825 Msa0711780:intron 25.0%
! TGAAAACTTGAAACAAACAT+GGG + chr5_1:3662807-3662826 Msa0711780:intron 25.0%
! AACAAGCTCAAAAAAAAACT+GGG + chr5_1:3663320-3663339 Msa0711780:CDS 25.0%
!! TAACTTTTTAATAATCCACG+TGG + chr5_1:3663445-3663464 Msa0711780:intron 25.0%
!!! AAACAGTTTTTCAGATACTT+TGG + chr5_1:3663474-3663493 Msa0711780:intron 25.0%
!!! AACAGTTTTTCAGATACTTT+GGG + chr5_1:3663475-3663494 Msa0711780:intron 25.0%
! TTTCTATTCCTAAATCAAAC+AGG - chr5_1:3663501-3663520 None:intergenic 25.0%
!!! TTTTGAGAACTAAATCAAAC+AGG - chr5_1:3663555-3663574 None:intergenic 25.0%
!! AAAACTGAAACAGATTTTAG+TGG + chr5_1:3663778-3663797 Msa0711780:intron 25.0%
!!! AAACTGAAACAGATTTTAGT+GGG + chr5_1:3663779-3663798 Msa0711780:intron 25.0%
! ACGTTTCTGATAATAATTTC+AGG + chr5_1:3664088-3664107 Msa0711780:intron 25.0%
!! AAAAACAAGTTGAAAGATCA+TGG + chr5_1:3664126-3664145 Msa0711780:CDS 25.0%
!! AAAATATTTGACTCGTGTAT+TGG + chr5_1:3664801-3664820 Msa0711780:CDS 25.0%
! TATCTATATTTATCGTTTGC+AGG + chr5_1:3664914-3664933 Msa0711780:intron 25.0%
! ATGCCATATTCTTTGTTAAA+TGG + chr5_1:3665194-3665213 Msa0711780:intron 25.0%
! TGCCATATTCTTTGTTAAAT+GGG + chr5_1:3665195-3665214 Msa0711780:intron 25.0%
! ATCCCATTTAACAAAGAATA+TGG - chr5_1:3665200-3665219 None:intergenic 25.0%
!! AATATAAGCCATGAATTTTG+TGG - chr5_1:3665295-3665314 None:intergenic 25.0%
!!! ATTTAAAATTTTTGCCGCTT+CGG + chr5_1:3665348-3665367 Msa0711780:exon 25.0%
! AAAAATCAAGGAGTAAGTAA+GGG - chr5_1:3665672-3665691 None:intergenic 25.0%
! AAAAAATCAAGGAGTAAGTA+AGG - chr5_1:3665673-3665692 None:intergenic 25.0%
!!! TTAGCGTTTTGGTTATTTGA+AGG - chr5_1:3660403-3660422 None:intergenic 30.0%
!!! AAAAATGAGTCTGTCGTTTT+GGG - chr5_1:3660433-3660452 None:intergenic 30.0%
!! TAAAAATGAGTCTGTCGTTT+TGG - chr5_1:3660434-3660453 None:intergenic 30.0%
!! AAAACGACAGACTCATTTTT+AGG + chr5_1:3660433-3660452 Msa0711780:five_prime_UTR 30.0%
!! AAACGACAGACTCATTTTTA+GGG + chr5_1:3660434-3660453 Msa0711780:five_prime_UTR 30.0%
AATGAAATTCAACTTCGTCA+GGG - chr5_1:3660482-3660501 None:intergenic 30.0%
AAATGAAATTCAACTTCGTC+AGG - chr5_1:3660483-3660502 None:intergenic 30.0%
!!! AGCTTTGTTTTCATTGAATC+TGG + chr5_1:3660789-3660808 Msa0711780:intron 30.0%
AACCATTCGTTGTATAATCT+AGG + chr5_1:3660852-3660871 Msa0711780:intron 30.0%
AACCTAGATTATACAACGAA+TGG - chr5_1:3660857-3660876 None:intergenic 30.0%
TGCATTCCTATAGAATTACA+TGG + chr5_1:3661019-3661038 Msa0711780:intron 30.0%
!!! TGGGCTTATTTTTTAGCTTA+TGG - chr5_1:3661480-3661499 None:intergenic 30.0%
AAAAAATAAGCCCATCCAAA+TGG + chr5_1:3661486-3661505 Msa0711780:intron 30.0%
AAAAATAAGCCCATCCAAAT+GGG + chr5_1:3661487-3661506 Msa0711780:intron 30.0%
TAGTATTTGCTTTGCTTTGT+TGG + chr5_1:3661582-3661601 Msa0711780:intron 30.0%
ATGCATTTATTTGCTTGCAT+TGG + chr5_1:3661637-3661656 Msa0711780:intron 30.0%
CACCAAACTTAAGATTCAAA+GGG - chr5_1:3661888-3661907 None:intergenic 30.0%
TCACCAAACTTAAGATTCAA+AGG - chr5_1:3661889-3661908 None:intergenic 30.0%
! TTTGAATCTTAAGTTTGGTG+AGG + chr5_1:3661888-3661907 Msa0711780:CDS 30.0%
ACAATGCAAAAGTGATTCAT+TGG + chr5_1:3662140-3662159 Msa0711780:intron 30.0%
CAATGCAAAAGTGATTCATT+GGG + chr5_1:3662141-3662160 Msa0711780:intron 30.0%
AAGGATTAAATTTACAGTCC+TGG + chr5_1:3662538-3662557 Msa0711780:intron 30.0%
AGGATTAAATTTACAGTCCT+GGG + chr5_1:3662539-3662558 Msa0711780:intron 30.0%
AAGAGTTAAAATAGTGTGAG+TGG + chr5_1:3662680-3662699 Msa0711780:intron 30.0%
AGAGTTAAAATAGTGTGAGT+GGG + chr5_1:3662681-3662700 Msa0711780:intron 30.0%
AAGATTCCCATACTTTAACA+TGG + chr5_1:3662742-3662761 Msa0711780:intron 30.0%
AGATTCCCATACTTTAACAT+GGG + chr5_1:3662743-3662762 Msa0711780:intron 30.0%
GAACAAGCTCAAAAAAAAAC+TGG + chr5_1:3663319-3663338 Msa0711780:CDS 30.0%
!!! CACTTCCAATTTTGTTTTCA+CGG - chr5_1:3663886-3663905 None:intergenic 30.0%
CCAACACAAATATAGACAAA+GGG - chr5_1:3664048-3664067 None:intergenic 30.0%
TCCAACACAAATATAGACAA+AGG - chr5_1:3664049-3664068 None:intergenic 30.0%
AAACTATCCAATGATGAGTA+AGG + chr5_1:3664270-3664289 Msa0711780:intron 30.0%
AACTATCCAATGATGAGTAA+GGG + chr5_1:3664271-3664290 Msa0711780:intron 30.0%
GAAGAATACAAAACAGAGAA+GGG - chr5_1:3664321-3664340 None:intergenic 30.0%
AGAAGAATACAAAACAGAGA+AGG - chr5_1:3664322-3664341 None:intergenic 30.0%
TGCTAACTGTTAAGAGTTTA+TGG + chr5_1:3664357-3664376 Msa0711780:intron 30.0%
AAAGAAGAAAAAGACCAAAG+AGG + chr5_1:3664423-3664442 Msa0711780:CDS 30.0%
TATAACCAATCCATTTGGAT+AGG - chr5_1:3664566-3664585 None:intergenic 30.0%
GTTATAGAGGACATATCTAT+GGG + chr5_1:3664580-3664599 Msa0711780:CDS 30.0%
GGTCAAACAAAATTACACAT+TGG - chr5_1:3664692-3664711 None:intergenic 30.0%
ATAATCCAGTTTCTTCTGAT+AGG + chr5_1:3664718-3664737 Msa0711780:intron 30.0%
! GAAATCCTTGTTTGATATTC+AGG + chr5_1:3664740-3664759 Msa0711780:intron 30.0%
ATACCAAGTCGAAACTTAAA+GGG - chr5_1:3664834-3664853 None:intergenic 30.0%
!!! TTTTATTTTCTTCAGGGATG+AGG + chr5_1:3665058-3665077 Msa0711780:intron 30.0%
!! TTTATTTTCTTCAGGGATGA+GGG + chr5_1:3665059-3665078 Msa0711780:intron 30.0%
GAAATTGTCCAATATGTCTT+TGG + chr5_1:3665126-3665145 Msa0711780:intron 30.0%
AAATCACACCAAAGACATAT+TGG - chr5_1:3665137-3665156 None:intergenic 30.0%
AAAGAATATGGCATCTAACA+CGG - chr5_1:3665188-3665207 None:intergenic 30.0%
TTAAATGGGATGACTTTGAT+TGG + chr5_1:3665209-3665228 Msa0711780:intron 30.0%
GCTTATATTTGATGTTGAGT+TGG + chr5_1:3665306-3665325 Msa0711780:CDS 30.0%
!! ATATTTGATGTTGAGTTGGT+TGG + chr5_1:3665310-3665329 Msa0711780:CDS 30.0%
! CGGCAAAAATTTTAAATCAG+CGG - chr5_1:3665345-3665364 None:intergenic 30.0%
TTTCTTTGTCCGTATAATGT+TGG + chr5_1:3665520-3665539 Msa0711780:three_prime_UTR 30.0%
CTAAAACATAAAGGAATGGA+GGG - chr5_1:3665584-3665603 None:intergenic 30.0%
TCACCTAAAACATAAAGGAA+TGG - chr5_1:3665588-3665607 None:intergenic 30.0%
TGCAATCACCTAAAACATAA+AGG - chr5_1:3665593-3665612 None:intergenic 30.0%
AGGTGATTGCAGAAATATTA+AGG + chr5_1:3665602-3665621 Msa0711780:three_prime_UTR 30.0%
!! TTGGTTATTTGAAGGTGCTT+CGG - chr5_1:3660395-3660414 None:intergenic 35.0%
! TGGGATTACAATTAGCGTTT+TGG - chr5_1:3660414-3660433 None:intergenic 35.0%
!! TTTTTCAACACTGACGACAA+TGG + chr5_1:3660500-3660519 Msa0711780:exon 35.0%
! TTTTCAACACTGACGACAAT+GGG + chr5_1:3660501-3660520 Msa0711780:exon 35.0%
ACTTCAAATTCAAACGCAGA+TGG - chr5_1:3660756-3660775 None:intergenic 35.0%
TATACTTGAAATGACACTCG+AGG + chr5_1:3661043-3661062 Msa0711780:intron 35.0%
ATACTTGAAATGACACTCGA+GGG + chr5_1:3661044-3661063 Msa0711780:intron 35.0%
!! TTGTCGTTGAATTGGTTTGA+TGG + chr5_1:3661201-3661220 Msa0711780:intron 35.0%
!! GAATTGGTTTGATGGTTACT+TGG + chr5_1:3661209-3661228 Msa0711780:intron 35.0%
AAAAATGATTCGTGCACGTT+TGG + chr5_1:3661294-3661313 Msa0711780:intron 35.0%
! TGTCTGGAGTTTGGTTAATT+GGG + chr5_1:3661669-3661688 Msa0711780:intron 35.0%
!! TAGCCTGAAATTTTAGAGGA+CGG - chr5_1:3661759-3661778 None:intergenic 35.0%
! AGAGTAGCCTGAAATTTTAG+AGG - chr5_1:3661763-3661782 None:intergenic 35.0%
CTAAAATTTCAGGCTACTCT+AGG + chr5_1:3661763-3661782 Msa0711780:intron 35.0%
AGCAAGGAACACAAAAAAAC+TGG - chr5_1:3661844-3661863 None:intergenic 35.0%
TGCCCTTTGAATCTTAAGTT+TGG + chr5_1:3661883-3661902 Msa0711780:CDS 35.0%
GCACAAAATAACCAGAAAGA+TGG - chr5_1:3661954-3661973 None:intergenic 35.0%
!!! CTTTTTTGACGATAGCGATA+TGG + chr5_1:3662230-3662249 Msa0711780:CDS 35.0%
TCATTCTGGACCAAATTTAC+TGG - chr5_1:3662413-3662432 None:intergenic 35.0%
AAATTTGGTCCAGAATGATC+TGG + chr5_1:3662415-3662434 Msa0711780:intron 35.0%
AATTTGGTCCAGAATGATCT+GGG + chr5_1:3662416-3662435 Msa0711780:intron 35.0%
TTCCTAGGAATAATGTTCCA+GGG - chr5_1:3662574-3662593 None:intergenic 35.0%
ATTCCTAGGAATAATGTTCC+AGG - chr5_1:3662575-3662594 None:intergenic 35.0%
TTTATTCCCATGGGAATAAG+AGG - chr5_1:3662723-3662742 None:intergenic 35.0%
! TGGGAATCTTTTATTCCCAT+GGG - chr5_1:3662732-3662751 None:intergenic 35.0%
! ATGGGAATCTTTTATTCCCA+TGG - chr5_1:3662733-3662752 None:intergenic 35.0%
GGATTGCAGAATGTAACATT+GGG - chr5_1:3662844-3662863 None:intergenic 35.0%
TGGATTGCAGAATGTAACAT+TGG - chr5_1:3662845-3662864 None:intergenic 35.0%
!! AAACACCCCCTAAGTTTTAT+CGG + chr5_1:3662871-3662890 Msa0711780:intron 35.0%
GTATACCGATAAAACTTAGG+GGG - chr5_1:3662879-3662898 None:intergenic 35.0%
GGTATACCGATAAAACTTAG+GGG - chr5_1:3662880-3662899 None:intergenic 35.0%
GGGTATACCGATAAAACTTA+GGG - chr5_1:3662881-3662900 None:intergenic 35.0%
TGGGTATACCGATAAAACTT+AGG - chr5_1:3662882-3662901 None:intergenic 35.0%
ATGAGTGGGAGTAAACAATA+AGG - chr5_1:3662905-3662924 None:intergenic 35.0%
CATTCCTGATGCATGAAAAT+AGG + chr5_1:3662922-3662941 Msa0711780:intron 35.0%
! CTTTCCTATTTTCATGCATC+AGG - chr5_1:3662929-3662948 None:intergenic 35.0%
TCACGACTTCAAAAAAGGTA+AGG - chr5_1:3663060-3663079 None:intergenic 35.0%
! TTTTTCTTCGATTGCTTTGC+TGG - chr5_1:3663127-3663146 None:intergenic 35.0%
AGCAAAGCAATCGAAGAAAA+AGG + chr5_1:3663126-3663145 Msa0711780:CDS 35.0%
AGGTGACAATAAGTTTGTCT+TGG + chr5_1:3663210-3663229 Msa0711780:CDS 35.0%
TTGGAAAGTGAAGATGAAGA+TGG + chr5_1:3663229-3663248 Msa0711780:CDS 35.0%
!! AGATTTAGCTTTGTCTGAAG+TGG - chr5_1:3663266-3663285 None:intergenic 35.0%
AAGGCTGAAACAGAAACAAA+AGG + chr5_1:3663295-3663314 Msa0711780:CDS 35.0%
! AACATCTTTTGCCTTCTTCT+TGG - chr5_1:3663350-3663369 None:intergenic 35.0%
!!! AAACTGTTTTTGAATCCACG+TGG - chr5_1:3663463-3663482 None:intergenic 35.0%
! ACTCCTCTATTCATCAGTTT+TGG + chr5_1:3663650-3663669 Msa0711780:intron 35.0%
! CTCCTCTATTCATCAGTTTT+GGG + chr5_1:3663651-3663670 Msa0711780:intron 35.0%
TTCCCAAAACTGATGAATAG+AGG - chr5_1:3663656-3663675 None:intergenic 35.0%
! ACTCCTCTATTCATCAGTTT+TGG + chr5_1:3663650-3663669 Msa0711780:intron 35.0%
! CTCCTCTATTCATCAGTTTT+GGG + chr5_1:3663651-3663670 Msa0711780:intron 35.0%
TTCCCAAAACTGATGAATAG+AGG - chr5_1:3663656-3663675 None:intergenic 35.0%
!!! GAAACAGATTTTAGTGGGTT+TGG + chr5_1:3663784-3663803 Msa0711780:intron 35.0%
!!! GGGTTTGGTTTTCAGTTTTT+TGG + chr5_1:3663799-3663818 Msa0711780:intron 35.0%
TTGCTCCGTGAAAACAAAAT+TGG + chr5_1:3663878-3663897 Msa0711780:intron 35.0%
TAAAGCTGTTGTAGAGATGT+TGG - chr5_1:3663911-3663930 None:intergenic 35.0%
CCCTTTGTCTATATTTGTGT+TGG + chr5_1:3664045-3664064 Msa0711780:intron 35.0%
! CAAGTTGAAAGATCATGGTA+AGG + chr5_1:3664131-3664150 Msa0711780:CDS 35.0%
TGAAAACCCTTACTCATCAT+TGG - chr5_1:3664280-3664299 None:intergenic 35.0%
!!! TCTTGTTTTTCTTCTCAACG+AGG - chr5_1:3664399-3664418 None:intergenic 35.0%
!! TCCAAATGGATTGGTTATAG+AGG + chr5_1:3664567-3664586 Msa0711780:CDS 35.0%
TCCTCTATAACCAATCCATT+TGG - chr5_1:3664571-3664590 None:intergenic 35.0%
GGTTATAGAGGACATATCTA+TGG + chr5_1:3664579-3664598 Msa0711780:CDS 35.0%
GATTTCCTATCAGAAGAAAC+TGG - chr5_1:3664726-3664745 None:intergenic 35.0%
ACTGACCTGAATATCAAACA+AGG - chr5_1:3664748-3664767 None:intergenic 35.0%
CATACCAAGTCGAAACTTAA+AGG - chr5_1:3664835-3664854 None:intergenic 35.0%
TATTTATCGTTTGCAGGTGT+AGG + chr5_1:3664920-3664939 Msa0711780:intron 35.0%
ACTTACAATTCCACCATCTA+TGG + chr5_1:3665098-3665117 Msa0711780:CDS 35.0%
CTTACAATTCCACCATCTAT+GGG + chr5_1:3665099-3665118 Msa0711780:CDS 35.0%
TTACAATTCCACCATCTATG+GGG + chr5_1:3665100-3665119 Msa0711780:CDS 35.0%
ACAATTTCATACCCCATAGA+TGG - chr5_1:3665114-3665133 None:intergenic 35.0%
AAGAATATGGCATCTAACAC+GGG - chr5_1:3665187-3665206 None:intergenic 35.0%
TGTTCGTTGTTATGCAGATA+TGG + chr5_1:3665247-3665266 Msa0711780:intron 35.0%
GGAGTATACCACAAAATTCA+TGG + chr5_1:3665284-3665303 Msa0711780:CDS 35.0%
GTGAATTTCCTACCAAACTT+CGG - chr5_1:3665452-3665471 None:intergenic 35.0%
TCCAGACAACCAACATTATA+CGG - chr5_1:3665532-3665551 None:intergenic 35.0%
CCTAAAACATAAAGGAATGG+AGG - chr5_1:3665585-3665604 None:intergenic 35.0%
! CCTCCATTCCTTTATGTTTT+AGG + chr5_1:3665582-3665601 Msa0711780:three_prime_UTR 35.0%
GTGGTGAGTGTCAATAATTA+AGG - chr5_1:3665714-3665733 None:intergenic 35.0%
TCCACATCGTCAGTACTATA+CGG - chr5_1:3660675-3660694 None:intergenic 40.0%
!! TATAGTACTGACGATGTGGA+AGG + chr5_1:3660675-3660694 Msa0711780:CDS 40.0%
TTGTACATTCCTTCTCCACA+AGG + chr5_1:3660893-3660912 Msa0711780:intron 40.0%
TACTTGAAATGACACTCGAG+GGG + chr5_1:3661045-3661064 Msa0711780:intron 40.0%
! TTGATGGTTACTTGGCACTT+CGG + chr5_1:3661217-3661236 Msa0711780:intron 40.0%
ACTAAAAACCAAGGCCCATT+TGG - chr5_1:3661504-3661523 None:intergenic 40.0%
! GTGTCTGGAGTTTGGTTAAT+TGG + chr5_1:3661668-3661687 Msa0711780:intron 40.0%
!! TTCCCGTCCTCTAAAATTTC+AGG + chr5_1:3661753-3661772 Msa0711780:intron 40.0%
!! AGCCTGAAATTTTAGAGGAC+GGG - chr5_1:3661758-3661777 None:intergenic 40.0%
! TAAGTTTGGTGAGGATGACT+TGG + chr5_1:3661897-3661916 Msa0711780:CDS 40.0%
AACCAGAAAGATGGATGCTT+CGG - chr5_1:3661945-3661964 None:intergenic 40.0%
CAAAAGTGATTCATTGGGAG+AGG + chr5_1:3662146-3662165 Msa0711780:intron 40.0%
ACAAAATACCTCCACTACTC+CGG - chr5_1:3662278-3662297 None:intergenic 40.0%
! ATAGGGGTGTGTTTGTTTCA+AGG + chr5_1:3662519-3662538 Msa0711780:intron 40.0%
TTCCCTGGAACATTATTCCT+AGG + chr5_1:3662569-3662588 Msa0711780:intron 40.0%
TAGTGTGAGTGGGAAGTTAT+AGG + chr5_1:3662691-3662710 Msa0711780:intron 40.0%
TGGTTACCTCTTATTCCCAT+GGG + chr5_1:3662714-3662733 Msa0711780:intron 40.0%
TGGAAAAGTCATGTGTACCT+AGG + chr5_1:3662775-3662794 Msa0711780:intron 40.0%
TGAAACAAACATGGGAACGT+AGG + chr5_1:3662815-3662834 Msa0711780:intron 40.0%
!!! CTTAGGGGGTGTTTGTTTTA+TGG - chr5_1:3662865-3662884 None:intergenic 40.0%
GTGGGAGTAAACAATAAGGT+GGG - chr5_1:3662901-3662920 None:intergenic 40.0%
AGTGGGAGTAAACAATAAGG+TGG - chr5_1:3662902-3662921 None:intergenic 40.0%
TTCATGCATCAGGAATGAGT+GGG - chr5_1:3662919-3662938 None:intergenic 40.0%
TTTCATGCATCAGGAATGAG+TGG - chr5_1:3662920-3662939 None:intergenic 40.0%
CTCGATCACGACTTCAAAAA+AGG - chr5_1:3663065-3663084 None:intergenic 40.0%
!!! CTTTTTTGAAGTCGTGATCG+AGG + chr5_1:3663063-3663082 Msa0711780:intron 40.0%
!! ATTTTCAGGCTGATTGTCGT+CGG - chr5_1:3663095-3663114 None:intergenic 40.0%
! GCTGGATTATCTCCATTTTC+AGG - chr5_1:3663109-3663128 None:intergenic 40.0%
TTGTCACCTCTAATGACAAC+TGG - chr5_1:3663199-3663218 None:intergenic 40.0%
! CTTTGTCTGAAGTGGAAATC+GGG - chr5_1:3663258-3663277 None:intergenic 40.0%
! GCTTTGTCTGAAGTGGAAAT+CGG - chr5_1:3663259-3663278 None:intergenic 40.0%
AGCTAAATCTGAGTCTCAGA+AGG + chr5_1:3663276-3663295 Msa0711780:CDS 40.0%
AACTGGGAAATCCAAGAAGA+AGG + chr5_1:3663336-3663355 Msa0711780:CDS 40.0%
AAAAGTTCAAGCTGTCGATG+AGG + chr5_1:3663393-3663412 Msa0711780:CDS 40.0%
! ACTTTGGGCCTGTTTGATTT+AGG + chr5_1:3663490-3663509 Msa0711780:intron 40.0%
GTTGAAAGATCATGGTAAGG+AGG + chr5_1:3664134-3664153 Msa0711780:CDS 40.0%
ATGAGAGACATTGTTCTGGT+TGG - chr5_1:3664229-3664248 None:intergenic 40.0%
TTGCATGAGAGACATTGTTC+TGG - chr5_1:3664233-3664252 None:intergenic 40.0%
GAACAATGTCTCTCATGCAA+AGG + chr5_1:3664233-3664252 Msa0711780:CDS 40.0%
AATGTCTCTCATGCAAAGGA+TGG + chr5_1:3664237-3664256 Msa0711780:CDS 40.0%
ATGCAAAGGATGGAGATGAT+GGG + chr5_1:3664247-3664266 Msa0711780:CDS 40.0%
AAAAAGACCAAAGAGGCTGA+AGG + chr5_1:3664430-3664449 Msa0711780:CDS 40.0%
AACGTGAGAACCTATCCAAA+TGG + chr5_1:3664553-3664572 Msa0711780:CDS 40.0%
GAGAACCTATCCAAATGGAT+TGG + chr5_1:3664558-3664577 Msa0711780:CDS 40.0%
ATATCTATGGGCAAACCAGA+TGG + chr5_1:3664592-3664611 Msa0711780:CDS 40.0%
AAGAGCTGATCTTGGAAAGA+AGG + chr5_1:3664618-3664637 Msa0711780:CDS 40.0%
CAGGTCAGTGTTAGATATAC+CGG + chr5_1:3664759-3664778 Msa0711780:intron 40.0%
ATTTCATACCCCATAGATGG+TGG - chr5_1:3665111-3665130 None:intergenic 40.0%
AGATATGGTGACAAACGTGT+TGG + chr5_1:3665262-3665281 Msa0711780:intron 40.0%
GATATGGTGACAAACGTGTT+GGG + chr5_1:3665263-3665282 Msa0711780:intron 40.0%
TGCAAACCTCGCATATTCAT+TGG + chr5_1:3665401-3665420 Msa0711780:three_prime_UTR 40.0%
! TCCGTATAATGTTGGTTGTC+TGG + chr5_1:3665528-3665547 Msa0711780:three_prime_UTR 40.0%
! GGTTGTCTGGAGTAATTTGA+TGG + chr5_1:3665541-3665560 Msa0711780:three_prime_UTR 40.0%
ACTGACGACAATGGGATTCT+GGG + chr5_1:3660509-3660528 Msa0711780:exon 45.0%
TCAGGGATTGAAGTGAAACC+TGG + chr5_1:3660639-3660658 Msa0711780:intron 45.0%
TGAAGTGAAACCTGGCAATC+CGG + chr5_1:3660647-3660666 Msa0711780:CDS 45.0%
TCGTCAGTACTATACGGAAC+CGG - chr5_1:3660669-3660688 None:intergenic 45.0%
!! TCCGTATAGTACTGACGATG+TGG + chr5_1:3660671-3660690 Msa0711780:CDS 45.0%
CTTCACGTCACTCAGGTTAT+TGG + chr5_1:3660702-3660721 Msa0711780:intron 45.0%
GACACTTCTGATTGAAGGTG+CGG - chr5_1:3660924-3660943 None:intergenic 45.0%
! GCACCTTCAATCAGAAGTGT+CGG + chr5_1:3660923-3660942 Msa0711780:intron 45.0%
TGATTCGTGCACGTTTGGAT+TGG + chr5_1:3661299-3661318 Msa0711780:intron 45.0%
AAACCAAGGCCCATTTGGAT+GGG - chr5_1:3661499-3661518 None:intergenic 45.0%
AAAACCAAGGCCCATTTGGA+TGG - chr5_1:3661500-3661519 None:intergenic 45.0%
AGCGGATGTATGCTAGATGA+AGG - chr5_1:3661539-3661558 None:intergenic 45.0%
! TTTGCTTGCATTGGCACTTG+AGG + chr5_1:3661646-3661665 Msa0711780:intron 45.0%
! AGAATGCTTTTCTCCGTCGA+TGG - chr5_1:3661796-3661815 None:intergenic 45.0%
ACCAGAAAGATGGATGCTTC+GGG - chr5_1:3661944-3661963 None:intergenic 45.0%
GTAACACACCCAGATCATTC+TGG - chr5_1:3662427-3662446 None:intergenic 45.0%
TTCCAGGGAATGTTATACCC+AGG - chr5_1:3662559-3662578 None:intergenic 45.0%
TGTGAGTGGGAAGTTATAGG+TGG + chr5_1:3662694-3662713 Msa0711780:intron 45.0%
GTGGTTACCTCTTATTCCCA+TGG + chr5_1:3662713-3662732 Msa0711780:intron 45.0%
!! TTTTCAGGCTGATTGTCGTC+GGG - chr5_1:3663094-3663113 None:intergenic 45.0%
GACGACAATCAGCCTGAAAA+TGG + chr5_1:3663094-3663113 Msa0711780:CDS 45.0%
GCTCACTTGAAAGAGAAACC+CGG + chr5_1:3663157-3663176 Msa0711780:CDS 45.0%
! TGGAAGCTGAGAACTTTTGC+CGG - chr5_1:3663179-3663198 None:intergenic 45.0%
CAGCTTCCAGTTGTCATTAG+AGG + chr5_1:3663190-3663209 Msa0711780:CDS 45.0%
! TCAAACAGGCCCAAAGTATC+TGG - chr5_1:3663487-3663506 None:intergenic 45.0%
!! GGAGGAAAGTGCTCATGTAA+AGG + chr5_1:3664152-3664171 Msa0711780:CDS 45.0%
TGTGCCAGATGAAAAGTCTG+AGG + chr5_1:3664188-3664207 Msa0711780:CDS 45.0%
! ACCTCCTCAGACTTTTCATC+TGG - chr5_1:3664195-3664214 None:intergenic 45.0%
CATGCAAAGGATGGAGATGA+TGG + chr5_1:3664246-3664265 Msa0711780:CDS 45.0%
! TTAGATGGCTTGGCTTCAGT+TGG - chr5_1:3664535-3664554 None:intergenic 45.0%
GGATAGGTTCTCACGTTAGA+TGG - chr5_1:3664550-3664569 None:intergenic 45.0%
! AGATCAGCTCTTTTGCCATC+TGG - chr5_1:3664610-3664629 None:intergenic 45.0%
GATGGCAAAAGAGCTGATCT+TGG + chr5_1:3664610-3664629 Msa0711780:CDS 45.0%
ACCGGCAAGCTACAAAAAGA+TGG + chr5_1:3664777-3664796 Msa0711780:CDS 45.0%
!! CCCATCTTTTTGTAGCTTGC+CGG - chr5_1:3664781-3664800 None:intergenic 45.0%
CCGGCAAGCTACAAAAAGAT+GGG + chr5_1:3664778-3664797 Msa0711780:CDS 45.0%
! GCACCCTTTAAGTTTCGACT+TGG + chr5_1:3664828-3664847 Msa0711780:CDS 45.0%
AGGTGTAGGACAAGTCATCA+AGG + chr5_1:3664934-3664953 Msa0711780:intron 45.0%
GGTGTAGGACAAGTCATCAA+GGG + chr5_1:3664935-3664954 Msa0711780:intron 45.0%
GTGTAGGACAAGTCATCAAG+GGG + chr5_1:3664936-3664955 Msa0711780:CDS 45.0%
! TTTTCTTCAGGGATGAGGGT+TGG + chr5_1:3665063-3665082 Msa0711780:intron 45.0%
TTTCTTCAGGGATGAGGGTT+GGG + chr5_1:3665064-3665083 Msa0711780:intron 45.0%
CAAAGGCCAATGAATATGCG+AGG - chr5_1:3665410-3665429 None:intergenic 45.0%
CCTGTAAAGTCTAGCGACAA+AGG - chr5_1:3665427-3665446 None:intergenic 45.0%
CCTTTGTCGCTAGACTTTAC+AGG + chr5_1:3665424-3665443 Msa0711780:three_prime_UTR 45.0%
ACTTTACAGGAGCCGAAGTT+TGG + chr5_1:3665437-3665456 Msa0711780:three_prime_UTR 45.0%
CACTGACGACAATGGGATTC+TGG + chr5_1:3660508-3660527 Msa0711780:exon 50.0%
CTGACGACAATGGGATTCTG+GGG + chr5_1:3660510-3660529 Msa0711780:exon 50.0%
AGGAAAGCTTCACGTCACTC+AGG + chr5_1:3660695-3660714 Msa0711780:CDS 50.0%
! TTCTGATTGAAGGTGCGGTG+CGG - chr5_1:3660919-3660938 None:intergenic 50.0%
! GCACCGACACTTCTGATTGA+AGG - chr5_1:3660929-3660948 None:intergenic 50.0%
! CACTTGAGGTGTCTGGAGTT+TGG + chr5_1:3661660-3661679 Msa0711780:intron 50.0%
TTTCAGGCTACTCTAGGCGT+TGG + chr5_1:3661769-3661788 Msa0711780:intron 50.0%
AGCATTCTTCAGTGCGCTTC+TGG + chr5_1:3661808-3661827 Msa0711780:CDS 50.0%
GTGTTCCTTGCTGCCAAACA+AGG + chr5_1:3661852-3661871 Msa0711780:CDS 50.0%
! CTCAACCTTGTTTGGCAGCA+AGG - chr5_1:3661860-3661879 None:intergenic 50.0%
! GTTTGGTGAGGATGACTTGG+TGG + chr5_1:3661900-3661919 Msa0711780:CDS 50.0%
!! GGATGACTTGGTGGCATTCT+CGG + chr5_1:3661909-3661928 Msa0711780:CDS 50.0%
! TCCCGAAGCATCCATCTTTC+TGG + chr5_1:3661940-3661959 Msa0711780:CDS 50.0%
TGATTCATTGGGAGAGGACG+TGG + chr5_1:3662152-3662171 Msa0711780:CDS 50.0%
GATTCATTGGGAGAGGACGT+GGG + chr5_1:3662153-3662172 Msa0711780:CDS 50.0%
TGTACACATCTTCGCCAGTC+CGG + chr5_1:3662256-3662275 Msa0711780:CDS 50.0%
GATCTGGGTGTGTTACATGC+CGG + chr5_1:3662431-3662450 Msa0711780:intron 50.0%
GTCCTGGGTATAACATTCCC+TGG + chr5_1:3662554-3662573 Msa0711780:intron 50.0%
! GGAAGCTGAGAACTTTTGCC+GGG - chr5_1:3663178-3663197 None:intergenic 50.0%
AGGATGAGCAGCTGCAAGAT+GGG + chr5_1:3663413-3663432 Msa0711780:CDS 50.0%
GCCAGATGAAAAGTCTGAGG+AGG + chr5_1:3664191-3664210 Msa0711780:CDS 50.0%
AGCTTCTCCTTCAGCCTCTT+TGG - chr5_1:3664440-3664459 None:intergenic 50.0%
GGTTCTCACGTTAGATGGCT+TGG - chr5_1:3664545-3664564 None:intergenic 50.0%
TAGGACAAGTCATCAAGGGG+TGG + chr5_1:3664939-3664958 Msa0711780:CDS 50.0%
AGGACAAGTCATCAAGGGGT+GGG + chr5_1:3664940-3664959 Msa0711780:CDS 50.0%
TTCTTCAGGGATGAGGGTTG+GGG + chr5_1:3665065-3665084 Msa0711780:intron 50.0%
!! GTTGAGTTGGTTGGCGTTGA+AGG + chr5_1:3665319-3665338 Msa0711780:CDS 50.0%
AGACCAAAACGAAGCCGAAG+CGG - chr5_1:3665365-3665384 None:intergenic 50.0%
TACAGGAGCCGAAGTTTGGT+AGG + chr5_1:3665441-3665460 Msa0711780:three_prime_UTR 50.0%
CTATACGGAACCGGATTGCC+AGG - chr5_1:3660660-3660679 None:intergenic 55.0%
AAGCCCATCCAAATGGGCCT+TGG + chr5_1:3661493-3661512 Msa0711780:intron 55.0%
! GCATTGGCACTTGAGGTGTC+TGG + chr5_1:3661653-3661672 Msa0711780:intron 55.0%
!! TCTAGGCGTTGGTCCATCGA+CGG + chr5_1:3661780-3661799 Msa0711780:CDS 55.0%
GGGCACGTCTCAACCTTGTT+TGG - chr5_1:3661868-3661887 None:intergenic 55.0%
! TTGGTGGCATTCTCGGTCGT+CGG + chr5_1:3661916-3661935 Msa0711780:CDS 55.0%
TCTCTCGTGTCGTCGTCATC+TGG - chr5_1:3661976-3661995 None:intergenic 55.0%
ATACCTCCACTACTCCGGAC+TGG - chr5_1:3662273-3662292 None:intergenic 55.0%
GAGGATGAGCAGCTGCAAGA+TGG + chr5_1:3663412-3663431 Msa0711780:CDS 55.0%
GTCATCAAGGGGTGGGATGT+TGG + chr5_1:3664947-3664966 Msa0711780:CDS 55.0%
!! TTGCCGCTTCGGCTTCGTTT+TGG + chr5_1:3665359-3665378 Msa0711780:three_prime_UTR 55.0%
TTGGGAGAGGACGTGGGAAC+TGG + chr5_1:3662159-3662178 Msa0711780:CDS 60.0%
TGGGAGAGGACGTGGGAACT+GGG + chr5_1:3662160-3662179 Msa0711780:CDS 60.0%
TCTTCGCCAGTCCGGAGTAG+TGG + chr5_1:3662264-3662283 Msa0711780:CDS 60.0%
GGGTGGGATGTTGGCGTCAA+TGG + chr5_1:3664956-3664975 Msa0711780:CDS 60.0%
GGACGTGGGAACTGGGTCAG+AGG + chr5_1:3662167-3662186 Msa0711780:CDS 65.0%
TCGCCAGTCCGGAGTAGTGG+AGG + chr5_1:3662267-3662286 Msa0711780:CDS 65.0%
! GCGGTGCGGCCTTGTGGAGA+AGG - chr5_1:3660905-3660924 None:intergenic 70.0%
! GAAGGTGCGGTGCGGCCTTG+TGG - chr5_1:3660911-3660930 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 3660384 3665761 3660384 ID=Msa0711780;Name=Msa0711780
chr5_1 mRNA 3660384 3665761 3660384 ID=Msa0711780-mRNA-1;Parent=Msa0711780;Name=Msa0711780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=135|1|1|1|1|1|11|413|501
chr5_1 exon 3660384 3660531 3660384 ID=Msa0711780-mRNA-1:exon:1332;Parent=Msa0711780-mRNA-1
chr5_1 exon 3660643 3660716 3660643 ID=Msa0711780-mRNA-1:exon:1333;Parent=Msa0711780-mRNA-1
chr5_1 exon 3661775 3662007 3661775 ID=Msa0711780-mRNA-1:exon:1334;Parent=Msa0711780-mRNA-1
chr5_1 exon 3662152 3662288 3662152 ID=Msa0711780-mRNA-1:exon:1335;Parent=Msa0711780-mRNA-1
chr5_1 exon 3663074 3663434 3663074 ID=Msa0711780-mRNA-1:exon:1336;Parent=Msa0711780-mRNA-1
chr5_1 exon 3664110 3664286 3664110 ID=Msa0711780-mRNA-1:exon:1337;Parent=Msa0711780-mRNA-1
chr5_1 exon 3664393 3664639 3664393 ID=Msa0711780-mRNA-1:exon:1338;Parent=Msa0711780-mRNA-1
chr5_1 exon 3664762 3664849 3664762 ID=Msa0711780-mRNA-1:exon:1339;Parent=Msa0711780-mRNA-1
chr5_1 exon 3664936 3664977 3664936 ID=Msa0711780-mRNA-1:exon:1340;Parent=Msa0711780-mRNA-1
chr5_1 exon 3665073 3665121 3665073 ID=Msa0711780-mRNA-1:exon:1341;Parent=Msa0711780-mRNA-1
chr5_1 exon 3665264 3665761 3665264 ID=Msa0711780-mRNA-1:exon:1342;Parent=Msa0711780-mRNA-1
chr5_1 five_prime_UTR 3660384 3660518 3660384 ID=Msa0711780-mRNA-1:five_prime_utr;Parent=Msa0711780-mRNA-1
chr5_1 CDS 3660519 3660531 3660519 ID=Msa0711780-mRNA-1:cds;Parent=Msa0711780-mRNA-1
chr5_1 CDS 3660643 3660716 3660643 ID=Msa0711780-mRNA-1:cds;Parent=Msa0711780-mRNA-1
chr5_1 CDS 3661775 3662007 3661775 ID=Msa0711780-mRNA-1:cds;Parent=Msa0711780-mRNA-1
chr5_1 CDS 3662152 3662288 3662152 ID=Msa0711780-mRNA-1:cds;Parent=Msa0711780-mRNA-1
chr5_1 CDS 3663074 3663434 3663074 ID=Msa0711780-mRNA-1:cds;Parent=Msa0711780-mRNA-1
chr5_1 CDS 3664110 3664286 3664110 ID=Msa0711780-mRNA-1:cds;Parent=Msa0711780-mRNA-1
chr5_1 CDS 3664393 3664639 3664393 ID=Msa0711780-mRNA-1:cds;Parent=Msa0711780-mRNA-1
chr5_1 CDS 3664762 3664849 3664762 ID=Msa0711780-mRNA-1:cds;Parent=Msa0711780-mRNA-1
chr5_1 CDS 3664936 3664977 3664936 ID=Msa0711780-mRNA-1:cds;Parent=Msa0711780-mRNA-1
chr5_1 CDS 3665073 3665121 3665073 ID=Msa0711780-mRNA-1:cds;Parent=Msa0711780-mRNA-1
chr5_1 CDS 3665264 3665348 3665264 ID=Msa0711780-mRNA-1:cds;Parent=Msa0711780-mRNA-1
chr5_1 three_prime_UTR 3665349 3665761 3665349 ID=Msa0711780-mRNA-1:three_prime_utr;Parent=Msa0711780-mRNA-1
Gene Sequence

>Msa0711780

ATGGGATTCTGGGGGATTGAAGTGAAACCTGGCAATCCGGTTCCGTATAGTACTGACGATGTGGAAGGAAAGCTTCACGTCACTCAGGCTACTCTAGGCGTTGGTCCATCGACGGAGAAAAGCATTCTTCAGTGCGCTTCTGGACGCAAAAATCCAGTTTTTTTGTGTTCCTTGCTGCCAAACAAGGTTGAGACGTGCCCTTTGAATCTTAAGTTTGGTGAGGATGACTTGGTGGCATTCTCGGTCGTCGGTTCCCGAAGCATCCATCTTTCTGGTTATTTTGTGCCAGATGACGACGACACGAGAGATGACTATGAATATGATTCATTGGGAGAGGACGTGGGAACTGGGTCAGAGGAGTCATCTGAATTTGATAGTGAAAATGGATATGATGATCACTTTTTTGACGATAGCGATATGGAAATGTACACATCTTCGCCAGTCCGGAGTAGTGGAGTCGTGATCGAGGAAATACCCGACGACAATCAGCCTGAAAATGGAGATAATCCAGCAAAGCAATCGAAGAAAAAGGAACAAACAGCTCACTTGAAAGAGAAACCCGGCAAAAGTTCTCAGCTTCCAGTTGTCATTAGAGGTGACAATAAGTTTGTCTTGGAAAGTGAAGATGAAGATGGTTTCCCGATTTCCACTTCAGACAAAGCTAAATCTGAGTCTCAGAAGGCTGAAACAGAAACAAAAGGAGAACAAGCTCAAAAAAAAACTGGGAAATCCAAGAAGAAGGCAAAAGATGTTGATGAGTCTGCTAGCTTAAAACGAAAAGTTCAAGCTGTCGATGAGGATGAGCAGCTGCAAGATGGGAAAAAGAAGAAGAAGAAAAACAAGTTGAAAGATCATGGTAAGGAGGAAAGTGCTCATGTAAAGGAGACTAATGTTACTGTGCCAGATGAAAAGTCTGAGGAGGTTAAAACTACAACCAACCAGAACAATGTCTCTCATGCAAAGGATGGAGATGATGGGAAACTATCCAATGATGAAGTCCTCGTTGAGAAGAAAAACAAGAAGAAAAAGAAGAAAAAGACCAAAGAGGCTGAAGGAGAAGCTGCTAAGAATGAAATTGCTACAACTGTTGAAAATCAGAAGTTGTCTACATCTGAGAAGAAAAAAGAGAAAGAACCAACTGAAGCCAAGCCATCTAACGTGAGAACCTATCCAAATGGATTGGTTATAGAGGACATATCTATGGGCAAACCAGATGGCAAAAGAGCTGATCTTGGAAAGAAGGTCAGTGTTAGATATACCGGCAAGCTACAAAAAGATGGGAAAATATTTGACTCGTGTATTGGAAAAGCACCCTTTAAGTTTCGACTTGGTGTAGGACAAGTCATCAAGGGGTGGGATGTTGGCGTCAATGGGATGAGGGTTGGGGACAAAAGAAGACTTACAATTCCACCATCTATGGGATATGGTGACAAACGTGTTGGGAGTATACCACAAAATTCATGGCTTATATTTGATGTTGAGTTGGTTGGCGTTGAAGGCCGCTGA

Protein sequence

>Msa0711780

MGFWGIEVKPGNPVPYSTDDVEGKLHVTQATLGVGPSTEKSILQCASGRKNPVFLCSLLPNKVETCPLNLKFGEDDLVAFSVVGSRSIHLSGYFVPDDDDTRDDYEYDSLGEDVGTGSEESSEFDSENGYDDHFFDDSDMEMYTSSPVRSSGVVIEEIPDDNQPENGDNPAKQSKKKEQTAHLKEKPGKSSQLPVVIRGDNKFVLESEDEDGFPISTSDKAKSESQKAETETKGEQAQKKTGKSKKKAKDVDESASLKRKVQAVDEDEQLQDGKKKKKKNKLKDHGKEESAHVKETNVTVPDEKSEEVKTTTNQNNVSHAKDGDDGKLSNDEVLVEKKNKKKKKKKTKEAEGEAAKNEIATTVENQKLSTSEKKKEKEPTEAKPSNVRTYPNGLVIEDISMGKPDGKRADLGKKVSVRYTGKLQKDGKIFDSCIGKAPFKFRLGVGQVIKGWDVGVNGMRVGDKRRLTIPPSMGYGDKRVGSIPQNSWLIFDVELVGVEGR*