AlfalfaGEDB | Msa0967880

M. sativa cultivar zhongmu-4 / Msa0967880

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967880	G7IUP0	98.056	463	6	2	2	464	6	465	0.0	945

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0092220	Msa0967880	0.800702	1.273064e-48	-8.615850e-47
Msa0113920	Msa0967880	0.811277	7.588857e-51	-8.615850e-47
Msa0287730	Msa0967880	0.946672	2.950283e-105	-8.615850e-47
Msa0373550	Msa0967880	0.802565	5.281894e-49	-8.615850e-47
Msa0468660	Msa0967880	0.811182	7.955480e-51	-8.615850e-47
Msa0474570	Msa0967880	0.863481	2.413852e-64	-8.615850e-47
Msa0616580	Msa0967880	0.809257	2.069625e-50	-8.615850e-47
Msa0620080	Msa0967880	0.805263	1.452651e-49	-8.615850e-47
Msa0656320	Msa0967880	0.812997	3.198143e-51	-8.615850e-47
Msa0660150	Msa0967880	0.818954	1.496866e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967880	MtrunA17_Chr2g0331391	98.056	463	6	2	2	464	6	465	0.0	945

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967880	AT3G16200.1	75.610	451	98	6	15	463	13	453	0.0	691

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Find 123 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATAAGAACCCGACTA+AGG	0.505050	6_3:+97988161	None:intergenic
AAACTATCTATCACATTCAC+CGG	0.547164	6_3:-97990233	Msa0967880:CDS
AAATGTTGTGCGTAAGATAT+TGG	0.372552	6_3:+97985751	None:intergenic
AACATGGTAAAACTGTAGAA+TGG	0.516964	6_3:-97988546	Msa0967880:CDS
AAGAAAGGTTGAAGCTCTGT+TGG	0.544106	6_3:+97990046	None:intergenic
AAGCATGGTGGGGAGTTAGA+GGG	0.651325	6_3:-97985807	Msa0967880:CDS
AAGCTAGGATCAGGTCAAGA+AGG	0.552627	6_3:-97985882	Msa0967880:CDS
AAGCTCTGAAAGCTGGGTTC+CGG	0.567889	6_3:-97987996	Msa0967880:CDS
AAGGGACCTGCATATGTTGA+TGG	0.450797	6_3:-97988271	Msa0967880:CDS
AATCTATTCTTGATGTGTAC+TGG	0.378297	6_3:-97985708	Msa0967880:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTATCTATCACATTCAC+CGG	-	chr6_3:97985407-97985426	Msa0967880:three_prime_UTR	30.0%
ATGAATTAGTTGAAGTCGTA+AGG	-	chr6_3:97986361-97986380	Msa0967880:intron	30.0%
TGAATTAGTTGAAGTCGTAA+GGG	-	chr6_3:97986362-97986381	Msa0967880:intron	30.0%
ATGGAAAAAATTCAGTTGAG+AGG	-	chr6_3:97986435-97986454	Msa0967880:intron	30.0%
TGGAAAAAATTCAGTTGAGA+GGG	-	chr6_3:97986436-97986455	Msa0967880:intron	30.0%
CATTTAGCAACTATTCAAAG+AGG	-	chr6_3:97986566-97986585	Msa0967880:intron	30.0%
ACTATTCAAAGAGGGAAATT+TGG	-	chr6_3:97986575-97986594	Msa0967880:intron	30.0%
CTATTCAAAGAGGGAAATTT+GGG	-	chr6_3:97986576-97986595	Msa0967880:intron	30.0%
GATGACAGAAATTTATCAAG+TGG	-	chr6_3:97986612-97986631	Msa0967880:intron	30.0%
AACATGGTAAAACTGTAGAA+TGG	-	chr6_3:97987094-97987113	Msa0967880:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	97985325	97990337	97985325	ID=Msa0967880;Name=Msa0967880
chr6_3	mRNA	97985325	97990337	97985325	ID=Msa0967880-mRNA-1;Parent=Msa0967880;Name=Msa0967880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=70\|1\|1\|1\|1\|1\|4\|197\|464
chr6_3	exon	97985325	97985937	97985325	ID=Msa0967880-mRNA-1:exon:18318;Parent=Msa0967880-mRNA-1
chr6_3	exon	97987911	97988026	97987911	ID=Msa0967880-mRNA-1:exon:18317;Parent=Msa0967880-mRNA-1
chr6_3	exon	97988133	97988577	97988133	ID=Msa0967880-mRNA-1:exon:18316;Parent=Msa0967880-mRNA-1
chr6_3	exon	97989850	97990337	97989850	ID=Msa0967880-mRNA-1:exon:18315;Parent=Msa0967880-mRNA-1
chr6_3	five_prime_UTR	97990268	97990337	97990268	ID=Msa0967880-mRNA-1:five_prime_utr;Parent=Msa0967880-mRNA-1
chr6_3	CDS	97989850	97990267	97989850	ID=Msa0967880-mRNA-1:cds;Parent=Msa0967880-mRNA-1
chr6_3	CDS	97988133	97988577	97988133	ID=Msa0967880-mRNA-1:cds;Parent=Msa0967880-mRNA-1
chr6_3	CDS	97987911	97988026	97987911	ID=Msa0967880-mRNA-1:cds;Parent=Msa0967880-mRNA-1
chr6_3	CDS	97985522	97985937	97985522	ID=Msa0967880-mRNA-1:cds;Parent=Msa0967880-mRNA-1
chr6_3	three_prime_UTR	97985325	97985521	97985325	ID=Msa0967880-mRNA-1:three_prime_utr;Parent=Msa0967880-mRNA-1

Gene Sequence

>Msa0967880

ATGTCATCACCAAAACTATCTATCACATTCACCGGAACACGGCATACACACTCTCCCAAGCAAACCACCACCACCGCCATGTTAGAGCGGACCCTCTCCTCCCGCCGCGGCAACTCACACGGCGACTCCGACGACGACGACGACCTAATCAACGCCGACGATTCCAAAACCAAAAAACAACACATTCTCTTTCGCATCACCAACAGAGCTTCAACCTTTCTTTCTCAAACTCGCCATTACGTTCCTTGTCTCACCGTCGCATTTCTTCTTCTCTTCGCTTTCTCTTTCTTTTTCTTCTTCACATCTCGTAGCTTCGTTTGCATCTCCTCTAACGCTTTCTTCAAACCTGCTTCACGCGCCGCGTTTTTTGGTTTGGATGGACTTGATTCGGATTTTGGTGCTCTTGGTGTGCCCTGCTGCAGATCGAAACATGGTAAAACTGTAGAATGGACATCGAAAGATCTGCTTAAGGGGCTGGAAGAGTTTGTTCCTATTTACGAAACACGGCCAATCAAAAACAATTTGTACGGGATGGGTTTGGACCACAGCTTTGGACTTTGGTTCATTGCTCGGTGGCTTAAACCGGATCTGATGATCGAGAGTGGCGCTTTCAAAGGACATTCAACTTGGGTTTTGCGGCAAGCTATGCCAGACACACGGATTGTTTCTCTTTCACCTAGGCATCCAGAAAAGTATCTAAAAAAGGGACCTGCATATGTTGATGGTAACTGTACATATTATGCTGGAAAGGACTTTGTGGATTTTGGAAGTGTTGATTGGTCAAAAGTGATGAAGGAACATGGGATTAAGGACCTTAGTCGGGTTCTTATATTTTTTGACGACCATCAAAATGAATTGAAAAGAATCGAACAAGCTCTGAAAGCTGGGTTCCGGCATCTTGTTTTTGAGGATAACTATGACACTGGTACTGGTGACCACTATTCATTGAGGCAGATATGTGATCAATTTTACATACGAGGTGGGGGACACAGTTGCTTTAAAGACAGTGATGAAGCTAGGATCAGGTCAAGAAGGAAGAAATTCTGGGAGAAAGCAGTTGATATCGAAGAACTGTGTGGACCGGGGGAAGCATGGTGGGGAGTTAGAGGGTACATGCGCGACAACTTTAATCATAGTAATAAGCCAATATCTTACGCACAACATTTCCAGAATAGCCGGTATGTTGAATCTATTCTTGATGTGTACTGGGAACTCCCACCAGTTGCTGGGCCTTCCCTCACTCATCAAACCAGATATGATCCTGCTCGTGCTCCCAATCCTATTGTTGAAGATGGGCGATATGGTTTGTTCCAACGGCTTGGCTTGGGTAAACTTGACAATTCTGTATTTAATGGATACACTCAGATGGTTTATTTACAGATATCTGAACAATAA

Protein sequence

>Msa0967880

MSSPKLSITFTGTRHTHSPKQTTTTAMLERTLSSRRGNSHGDSDDDDDLINADDSKTKKQHILFRITNRASTFLSQTRHYVPCLTVAFLLLFAFSFFFFFTSRSFVCISSNAFFKPASRAAFFGLDGLDSDFGALGVPCCRSKHGKTVEWTSKDLLKGLEEFVPIYETRPIKNNLYGMGLDHSFGLWFIARWLKPDLMIESGAFKGHSTWVLRQAMPDTRIVSLSPRHPEKYLKKGPAYVDGNCTYYAGKDFVDFGSVDWSKVMKEHGIKDLSRVLIFFDDHQNELKRIEQALKAGFRHLVFEDNYDTGTGDHYSLRQICDQFYIRGGGHSCFKDSDEARIRSRRKKFWEKAVDIEELCGPGEAWWGVRGYMRDNFNHSNKPISYAQHFQNSRYVESILDVYWELPPVAGPSLTHQTRYDPARAPNPIVEDGRYGLFQRLGLGKLDNSVFNGYTQMVYLQISEQ*