AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0967880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967880 MtrunA17_Chr2g0331391 98.056 463 6 2 2 464 6 465 0.0 945
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967880 AT3G16200.1 75.610 451 98 6 15 463 13 453 0.0 691

Find 123 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGACAATTCTGTATTTAA+TGG 0.107700 6_3:-97985562 Msa0967880:CDS
GATGGACTTGATTCGGATTT+TGG 0.155423 6_3:-97989870 Msa0967880:CDS
GGAAAGGACTTTGTGGATTT+TGG 0.180019 6_3:-97988229 Msa0967880:CDS
ATTGGCCGTGTTTCGTAAAT+AGG 0.209455 6_3:+97988484 None:intergenic
GGTCAAGAAGGAAGAAATTC+TGG 0.238849 6_3:-97985870 Msa0967880:CDS
ATTCAACATACCGGCTATTC+TGG 0.240870 6_3:+97985728 None:intergenic
TGGGAACTCCCACCAGTTGC+TGG 0.256831 6_3:-97985688 Msa0967880:CDS
GAAGCATGGTGGGGAGTTAG+AGG 0.264109 6_3:-97985808 Msa0967880:CDS
GGCGGTGGTGGTGGTTTGCT+TGG 0.273239 6_3:+97990190 None:intergenic
ATATTTGCTTCAGCCTGATT+TGG 0.316623 6_3:-97985434 Msa0967880:three_prime_UTR
ATGAGTAAAGAATTTGAAAA+AGG 0.322232 6_3:+97985375 None:intergenic
GATGAAGGAACATGGGATTA+AGG 0.331133 6_3:-97988185 Msa0967880:CDS
TGGAATCGTCGGCGTTGATT+AGG 0.335459 6_3:+97990102 None:intergenic
CAATTTGTACGGGATGGGTT+TGG 0.371624 6_3:-97988455 Msa0967880:CDS
AAATGTTGTGCGTAAGATAT+TGG 0.372552 6_3:+97985751 None:intergenic
AGGTTTGAAGAAAGCGTTAG+AGG 0.376499 6_3:+97989920 None:intergenic
AATCTATTCTTGATGTGTAC+TGG 0.378297 6_3:-97985708 Msa0967880:CDS
TGGTTTGGATGGACTTGATT+CGG 0.385540 6_3:-97989877 Msa0967880:CDS
ATGGGTTTGGACCACAGCTT+TGG 0.386433 6_3:-97988442 Msa0967880:CDS
ACTATATCTTAAGCCAAATC+AGG 0.390156 6_3:+97985421 None:intergenic
GCGGTGGTGGTGGTTTGCTT+GGG 0.391412 6_3:+97990191 None:intergenic
CTTTCAAAGGACATTCAACT+TGG 0.391555 6_3:-97988366 Msa0967880:CDS
CCGCTCTAACATGGCGGTGG+TGG 0.392725 6_3:+97990178 None:intergenic
TTGGACTTTGGTTCATTGCT+CGG 0.397327 6_3:-97988423 Msa0967880:CDS
TGGACCACAGCTTTGGACTT+TGG 0.407799 6_3:-97988435 Msa0967880:CDS
TTGTTCCAACGGCTTGGCTT+GGG 0.409816 6_3:-97985589 Msa0967880:CDS
AGAGAAACAATCCGTGTGTC+TGG 0.410853 6_3:+97988325 None:intergenic
ATCGAACAAGCTCTGAAAGC+TGG 0.412671 6_3:-97988003 Msa0967880:CDS
CCCAATCCTATTGTTGAAGA+TGG 0.416059 6_3:-97985622 Msa0967880:CDS
CTCTAACATGGCGGTGGTGG+TGG 0.418848 6_3:+97990181 None:intergenic
CATTGCTCGGTGGCTTAAAC+CGG 0.420779 6_3:-97988410 Msa0967880:CDS
ATTGTTGAAGATGGGCGATA+TGG 0.421102 6_3:-97985613 Msa0967880:CDS
TATCGCCCATCTTCAACAAT+AGG 0.424527 6_3:+97985616 None:intergenic
TTTGTTCCAACGGCTTGGCT+TGG 0.427867 6_3:-97985590 Msa0967880:CDS
CAAGGGTATGTTGTAGTTGA+AGG 0.429091 6_3:-97985483 Msa0967880:three_prime_UTR
CCCATCTTCAACAATAGGAT+TGG 0.442426 6_3:+97985621 None:intergenic
TTTGAGGATAACTATGACAC+TGG 0.446853 6_3:-97987964 Msa0967880:CDS
CAAATATTTGTAAATAATAC+AGG 0.448546 6_3:+97985450 None:intergenic
GGCGATATGGTTTGTTCCAA+CGG 0.449699 6_3:-97985600 Msa0967880:CDS
AAGGGACCTGCATATGTTGA+TGG 0.450797 6_3:-97988271 Msa0967880:CDS
AGCACGAGCAGGATCATATC+TGG 0.451103 6_3:+97985645 None:intergenic
TTATGCTGGAAAGGACTTTG+TGG 0.455968 6_3:-97988236 Msa0967880:CDS
ACATCGAAAGATCTGCTTAA+GGG 0.459473 6_3:-97988523 Msa0967880:CDS
GTGAGGGAAGGCCCAGCAAC+TGG 0.459978 6_3:+97985676 None:intergenic
TATGGTTTGTTCCAACGGCT+TGG 0.461150 6_3:-97985595 Msa0967880:CDS
GACATCGAAAGATCTGCTTA+AGG 0.463805 6_3:-97988524 Msa0967880:CDS
GGGAACTCCCACCAGTTGCT+GGG 0.465738 6_3:-97985687 Msa0967880:CDS
ATCGAAGAACTGTGTGGACC+GGG 0.467070 6_3:-97985832 Msa0967880:CDS
GTGAATGTGATAGATAGTTT+TGG 0.469781 6_3:+97990236 None:intergenic
ACCATCAAAATGAATTGAAA+AGG 0.476313 6_3:-97988132 Msa0967880:intron
GAAAGATCTGCTTAAGGGGC+TGG 0.477312 6_3:-97988518 Msa0967880:CDS
GCCGTGTGAGTTGCCGCGGC+GGG 0.479440 6_3:+97990145 None:intergenic
CCATCTTCAACAATAGGATT+GGG 0.481274 6_3:+97985622 None:intergenic
AGAGTGTGTATGCCGTGTTC+CGG 0.484405 6_3:+97990214 None:intergenic
AAAATATAAGAACCCGACTA+AGG 0.505050 6_3:+97988161 None:intergenic
AGTTGCCGCGGCGGGAGGAG+AGG 0.516643 6_3:+97990153 None:intergenic
AACATGGTAAAACTGTAGAA+TGG 0.516964 6_3:-97988546 Msa0967880:CDS
ATGGGATTAAGGACCTTAGT+CGG 0.517214 6_3:-97988174 Msa0967880:CDS
TCGAACAAGCTCTGAAAGCT+GGG 0.517584 6_3:-97988002 Msa0967880:CDS
GTTGCCGCGGCGGGAGGAGA+GGG 0.518539 6_3:+97990154 None:intergenic
GTCAAGAAGGAAGAAATTCT+GGG 0.519369 6_3:-97985869 Msa0967880:CDS
ATCGAGAGTGGCGCTTTCAA+AGG 0.522095 6_3:-97988379 Msa0967880:CDS
ATAGGATTGGGAGCACGAGC+AGG 0.525259 6_3:+97985634 None:intergenic
CATCGAAAGATCTGCTTAAG+GGG 0.526864 6_3:-97988522 Msa0967880:CDS
TGGGATTAAGGACCTTAGTC+GGG 0.527204 6_3:-97988173 Msa0967880:CDS
ATGGCGAGTTTGAGAAAGAA+AGG 0.527580 6_3:+97990031 None:intergenic
GGAGAGGGTCCGCTCTAACA+TGG 0.531732 6_3:+97990169 None:intergenic
ACAGTGATGAAGCTAGGATC+AGG 0.535106 6_3:-97985891 Msa0967880:CDS
CTGTACATATTATGCTGGAA+AGG 0.537392 6_3:-97988245 Msa0967880:CDS
ACTCCCCACCATGCTTCCCC+CGG 0.538603 6_3:+97985814 None:intergenic
GTGTGAGTTGCCGCGGCGGG+AGG 0.541072 6_3:+97990148 None:intergenic
GATTAGGTCGTCGTCGTCGT+CGG 0.541648 6_3:+97990118 None:intergenic
AAGAAAGGTTGAAGCTCTGT+TGG 0.544106 6_3:+97990046 None:intergenic
ATCTATTCTTGATGTGTACT+GGG 0.544485 6_3:-97985707 Msa0967880:CDS
CACAACATTTCCAGAATAGC+CGG 0.546708 6_3:-97985738 Msa0967880:CDS
AAACTATCTATCACATTCAC+CGG 0.547164 6_3:-97990233 Msa0967880:CDS
TATCGAAGAACTGTGTGGAC+CGG 0.547616 6_3:-97985833 Msa0967880:CDS
GGTAACTGTACATATTATGC+TGG 0.547866 6_3:-97988250 Msa0967880:CDS
TTAAAGACAGTGATGAAGCT+AGG 0.550409 6_3:-97985897 Msa0967880:CDS
CCAATCCTATTGTTGAAGAT+GGG 0.550828 6_3:-97985621 Msa0967880:CDS
AAGCTAGGATCAGGTCAAGA+AGG 0.552627 6_3:-97985882 Msa0967880:CDS
ATATCTGCCTCAATGAATAG+TGG 0.555941 6_3:+97987932 None:intergenic
GATAACTATGACACTGGTAC+TGG 0.556884 6_3:-97987958 Msa0967880:CDS
CGCCGTGTGAGTTGCCGCGG+CGG 0.564349 6_3:+97990144 None:intergenic
TCAAAAGTGATGAAGGAACA+TGG 0.564530 6_3:-97988193 Msa0967880:CDS
CCACTCTCGATCATCAGATC+CGG 0.564703 6_3:+97988391 None:intergenic
ATTTACAGTTGCTTAGACAA+GGG 0.565064 6_3:-97985500 Msa0967880:three_prime_UTR
AAGCTCTGAAAGCTGGGTTC+CGG 0.567889 6_3:-97987996 Msa0967880:CDS
GGTCCGCTCTAACATGGCGG+TGG 0.567904 6_3:+97990175 None:intergenic
AGGGAAGGCCCAGCAACTGG+TGG 0.571202 6_3:+97985679 None:intergenic
TCCCGCCGCGGCAACTCACA+CGG 0.573930 6_3:-97990146 Msa0967880:CDS
CAGTTACCATCAACATATGC+AGG 0.580311 6_3:+97988265 None:intergenic
GTTTACCCAAGCCAAGCCGT+TGG 0.582083 6_3:+97985584 None:intergenic
CATATCTGGTTTGATGAGTG+AGG 0.582958 6_3:+97985659 None:intergenic
GACTTTGGTTCATTGCTCGG+TGG 0.585989 6_3:-97988420 Msa0967880:CDS
CGGTGAGACAAGGAACGTAA+TGG 0.586367 6_3:+97990012 None:intergenic
AATTTACAGTTGCTTAGACA+AGG 0.588109 6_3:-97985501 Msa0967880:three_prime_UTR
ATTTAATGGATACACTCAGA+TGG 0.590958 6_3:-97985548 Msa0967880:CDS
CAAGAATAGATTCAACATAC+CGG 0.595311 6_3:+97985719 None:intergenic
TTGTTCCTATTTACGAAACA+CGG 0.600459 6_3:-97988489 Msa0967880:CDS
TTTCAAAGGACATTCAACTT+GGG 0.605039 6_3:-97988365 Msa0967880:CDS
TGATTGGTCAAAAGTGATGA+AGG 0.606371 6_3:-97988200 Msa0967880:CDS
CGAAGAACTGTGTGGACCGG+GGG 0.610571 6_3:-97985830 Msa0967880:CDS
AGAAATGCGACGGTGAGACA+AGG 0.614707 6_3:+97990002 None:intergenic
ATATCTGGTTTGATGAGTGA+GGG 0.615387 6_3:+97985660 None:intergenic
CAAAAGTGATGAAGGAACAT+GGG 0.618251 6_3:-97988192 Msa0967880:CDS
CTATCACATTCACCGGAACA+CGG 0.620764 6_3:-97990226 Msa0967880:CDS
CCACCACCGCCATGTTAGAG+CGG 0.625424 6_3:-97990178 Msa0967880:CDS
AGTCGCCGTGTGAGTTGCCG+CGG 0.625812 6_3:+97990141 None:intergenic
GGGAAGGCCCAGCAACTGGT+GGG 0.631549 6_3:+97985680 None:intergenic
CTGGTTTGATGAGTGAGGGA+AGG 0.637482 6_3:+97985664 None:intergenic
TCGAAGAACTGTGTGGACCG+GGG 0.638921 6_3:-97985831 Msa0967880:CDS
CCGGATCTGATGATCGAGAG+TGG 0.640213 6_3:-97988391 Msa0967880:CDS
GGTAAAGGCAGATCGAAACA+TGG 0.645538 6_3:-97988562 Msa0967880:intron
GGATTGTTTCTCTTTCACCT+AGG 0.649691 6_3:-97988315 Msa0967880:CDS
AAGCATGGTGGGGAGTTAGA+GGG 0.651325 6_3:-97985807 Msa0967880:CDS
TGAACCAAAGTCCAAAGCTG+TGG 0.657862 6_3:+97988431 None:intergenic
GGCAAGCTATGCCAGACACA+CGG 0.658316 6_3:-97988336 Msa0967880:CDS
GAAGAGAAGAAGAAATGCGA+CGG 0.683216 6_3:+97989992 None:intergenic
CGGACCCTCTCCTCCCGCCG+CGG 0.692577 6_3:-97990158 Msa0967880:CDS
GTTGATATCGAAGAACTGTG+TGG 0.717547 6_3:-97985838 Msa0967880:CDS
CTGGTGACCACTATTCATTG+AGG 0.723424 6_3:-97987939 Msa0967880:CDS
GAGGGTCCGCTCTAACATGG+CGG 0.747013 6_3:+97990172 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTCATTGTTTTTTTATTT+GGG + chr6_3:97986348-97986367 None:intergenic 10.0%
!!! TAATTCATTGTTTTTTTATT+TGG + chr6_3:97986349-97986368 None:intergenic 10.0%
!!! TAATTTTATAACCATTTTAA+GGG + chr6_3:97988570-97988589 None:intergenic 10.0%
!! TTAAAATGGTTATAAAATTA+GGG - chr6_3:97988570-97988589 Msa0967880:intron 10.0%
!!! ATTATATTAGTATTTTAACT+AGG - chr6_3:97988850-97988869 Msa0967880:intron 10.0%
!! ACAATAAATTGAGTATTTAA+AGG + chr6_3:97986015-97986034 None:intergenic 15.0%
!!! ATTTATTGTTATTGATTTTC+AGG - chr6_3:97986026-97986045 Msa0967880:intron 15.0%
!! AAATAAAATTTGATTCCATT+CGG + chr6_3:97986061-97986080 None:intergenic 15.0%
!! AAGTTAAATAAATACTAGTT+TGG + chr6_3:97986645-97986664 None:intergenic 15.0%
!!! ACTAGTATTTATTTAACTTT+TGG - chr6_3:97986646-97986665 Msa0967880:intron 15.0%
!!! CTAGTATTTATTTAACTTTT+GGG - chr6_3:97986647-97986666 Msa0967880:intron 15.0%
!! AATACTTATAAGTTTATTCT+TGG - chr6_3:97987057-97987076 Msa0967880:intron 15.0%
!!! AAAAGTAAATTTTGGTTAAT+AGG - chr6_3:97987986-97988005 Msa0967880:CDS 15.0%
!!! ATTTATTTCTTGACATTTTT+TGG + chr6_3:97988287-97988306 None:intergenic 15.0%
!!! CTAATTTTATAACCATTTTA+AGG + chr6_3:97988571-97988590 None:intergenic 15.0%
!! CTTAAAATGGTTATAAAATT+AGG - chr6_3:97988569-97988588 Msa0967880:intron 15.0%
!!! AAATATTTTTCTAATAGCTT+TGG - chr6_3:97989660-97989679 Msa0967880:intron 15.0%
!! CAAATATTTGTAAATAATAC+AGG + chr6_3:97990193-97990212 None:intergenic 15.0%
!!! TTTTTAGAATCGTGATTTTT+AGG - chr6_3:97985861-97985880 Msa0967880:CDS 20.0%
!!! AAATGCATAAATTTTAGCTT+AGG - chr6_3:97985907-97985926 Msa0967880:CDS 20.0%
!! AATAAAATTTGATTCCATTC+GGG + chr6_3:97986060-97986079 None:intergenic 20.0%
!!! AATTGATTGATTTTGAATTC+TGG - chr6_3:97986089-97986108 Msa0967880:intron 20.0%
!!! ATTGATTGATTTTGAATTCT+GGG - chr6_3:97986090-97986109 Msa0967880:intron 20.0%
!! TTTAGTAACACAAACAAAAT+TGG - chr6_3:97986191-97986210 Msa0967880:intron 20.0%
!! TATAAGTTTATTCTTGGTAA+AGG - chr6_3:97987063-97987082 Msa0967880:intron 20.0%
!! GAAAGAAAATTCAATAAAGT+AGG + chr6_3:97987787-97987806 None:intergenic 20.0%
!! AGTCTATATAGTAAATTGAA+AGG - chr6_3:97987941-97987960 Msa0967880:CDS 20.0%
!! TATACTCTTTATCTTTACTT+GGG + chr6_3:97989263-97989282 None:intergenic 20.0%
!! TTATACTCTTTATCTTTACT+TGG + chr6_3:97989264-97989283 None:intergenic 20.0%
!! AAACTCAAAACTCAATTTAT+TGG - chr6_3:97989331-97989350 Msa0967880:intron 20.0%
!!! TACAAACATTTTTCAACAAA+TGG + chr6_3:97989586-97989605 None:intergenic 20.0%
!! TTTGTTGAAAAATGTTTGTA+TGG - chr6_3:97989586-97989605 Msa0967880:intron 20.0%
!! TTGTTGAAAAATGTTTGTAT+GGG - chr6_3:97989587-97989606 Msa0967880:intron 20.0%
!! ATGAGTAAAGAATTTGAAAA+AGG + chr6_3:97990268-97990287 None:intergenic 20.0%
!!! TTTAGTTACGTTTTAATGTA+TGG - chr6_3:97990311-97990330 Msa0967880:five_prime_UTR 20.0%
!!! AATGTGTTGTTTTTTGGTTT+TGG + chr6_3:97985561-97985580 None:intergenic 25.0%
!!! AAAGAGAATGTGTTGTTTTT+TGG + chr6_3:97985567-97985586 None:intergenic 25.0%
! AATGCGAATTTAACATGAAT+CGG + chr6_3:97985841-97985860 None:intergenic 25.0%
!!! ATTTATGCATTTTTTCTCTC+TGG + chr6_3:97985899-97985918 None:intergenic 25.0%
!!! ATAAATTTTAGCTTAGGAGT+TGG - chr6_3:97985913-97985932 Msa0967880:CDS 25.0%
!!! TAAATGTAACTTGTTTTTGG+GGG + chr6_3:97986552-97986571 None:intergenic 25.0%
!!! CTAAATGTAACTTGTTTTTG+GGG + chr6_3:97986553-97986572 None:intergenic 25.0%
!!! GCTAAATGTAACTTGTTTTT+GGG + chr6_3:97986554-97986573 None:intergenic 25.0%
!!! TGCTAAATGTAACTTGTTTT+TGG + chr6_3:97986555-97986574 None:intergenic 25.0%
! ATTTAGCAACTATTCAAAGA+GGG - chr6_3:97986567-97986586 Msa0967880:intron 25.0%
!! TCAATCACATTCCTTTAAAA+TGG - chr6_3:97986741-97986760 Msa0967880:intron 25.0%
!! TCAATCACATTCCTTTAAAA+TGG - chr6_3:97986741-97986760 Msa0967880:intron 25.0%
! CCAATCAAAAACAATTTGTA+CGG - chr6_3:97987174-97987193 Msa0967880:intron 25.0%
! CAATCAAAAACAATTTGTAC+GGG - chr6_3:97987175-97987194 Msa0967880:intron 25.0%
!!! TCCAGAAAAGTATCTAAAAA+AGG - chr6_3:97987350-97987369 Msa0967880:intron 25.0%
!!! CCAGAAAAGTATCTAAAAAA+GGG - chr6_3:97987351-97987370 Msa0967880:intron 25.0%
! ACCATCAAAATGAATTGAAA+AGG - chr6_3:97987508-97987527 Msa0967880:intron 25.0%
!! ACCTTTTCAATTCATTTTGA+TGG + chr6_3:97987512-97987531 None:intergenic 25.0%
! TTATTTGTATGCATTTCTCA+CGG + chr6_3:97987815-97987834 None:intergenic 25.0%
!! AGTGTTTTTCATCAATTTTC+TGG + chr6_3:97987893-97987912 None:intergenic 25.0%
!! ATGACTGCAAAAGTAAATTT+TGG - chr6_3:97987978-97987997 Msa0967880:CDS 25.0%
! AATTGCAAGACTCTAATAAA+TGG + chr6_3:97988018-97988037 None:intergenic 25.0%
! AGTCTTGCAATTTATATGAT+TGG - chr6_3:97988026-97988045 Msa0967880:intron 25.0%
!! GATTTGAATGTTATGTTTTG+GGG + chr6_3:97988258-97988277 None:intergenic 25.0%
!! GGATTTGAATGTTATGTTTT+GGG + chr6_3:97988259-97988278 None:intergenic 25.0%
!! TGGATTTGAATGTTATGTTT+TGG + chr6_3:97988260-97988279 None:intergenic 25.0%
!!! TCTTGACATTTTTTGGTATT+TGG + chr6_3:97988280-97988299 None:intergenic 25.0%
! TTTGAAAGAAAAAAGAACAG+AGG - chr6_3:97988326-97988345 Msa0967880:CDS 25.0%
!!! AACCATTTTAAGGGTATTTT+GGG + chr6_3:97988561-97988580 None:intergenic 25.0%
!!! TAACCATTTTAAGGGTATTT+TGG + chr6_3:97988562-97988581 None:intergenic 25.0%
! TTATAAAATTAGGGTCAACT+TGG - chr6_3:97988579-97988598 Msa0967880:intron 25.0%
! TATAAAATTAGGGTCAACTT+GGG - chr6_3:97988580-97988599 Msa0967880:intron 25.0%
! AGATGATGACATGTATATAT+GGG + chr6_3:97988906-97988925 None:intergenic 25.0%
! AAGATGATGACATGTATATA+TGG + chr6_3:97988907-97988926 None:intergenic 25.0%
! TCTTCATCTTCATCATATAT+TGG - chr6_3:97988985-97989004 Msa0967880:intron 25.0%
! AAGATCTATATTGAGAGTAA+AGG + chr6_3:97989015-97989034 None:intergenic 25.0%
!!! GAACTAGTTTTTTAGTTGTT+TGG - chr6_3:97989133-97989152 Msa0967880:intron 25.0%
! TTTGGTTGAAAAGTAAATGA+AGG - chr6_3:97989151-97989170 Msa0967880:intron 25.0%
! TTGGTTGAAAAGTAAATGAA+GGG - chr6_3:97989152-97989171 Msa0967880:intron 25.0%
!!! AAATATGCTTTTTCTTTTCC+CGG + chr6_3:97989223-97989242 None:intergenic 25.0%
! TAAAGTGCATAAGAAAAGTA+AGG - chr6_3:97989356-97989375 Msa0967880:intron 25.0%
!! GCATTATTACTATTTTGTAG+TGG + chr6_3:97989483-97989502 None:intergenic 25.0%
!!! AGAATTCTTAATTGTCGTTT+TGG - chr6_3:97989521-97989540 Msa0967880:intron 25.0%
! ATAAAGATTATCAACAGGTA+TGG + chr6_3:97989615-97989634 None:intergenic 25.0%
! CCAATATAAAGATTATCAAC+AGG + chr6_3:97989620-97989639 None:intergenic 25.0%
!!! CCTGTTGATAATCTTTATAT+TGG - chr6_3:97989617-97989636 Msa0967880:intron 25.0%
!!! GTTGATAATCTTTATATTGG+TGG - chr6_3:97989620-97989639 Msa0967880:intron 25.0%
!!! TTTTCTAATAGCTTTGGAAT+AGG - chr6_3:97989666-97989685 Msa0967880:intron 25.0%
!! TTTGTTCTTTTGTTGATCTA+AGG - chr6_3:97989703-97989722 Msa0967880:intron 25.0%
! CTTGACAATTCTGTATTTAA+TGG - chr6_3:97990078-97990097 Msa0967880:CDS 25.0%
! GTGAATGTGATAGATAGTTT+TGG + chr6_3:97985407-97985426 None:intergenic 30.0%
AAACTATCTATCACATTCAC+CGG - chr6_3:97985407-97985426 Msa0967880:three_prime_UTR 30.0%
!!! TTTTTTGGTTTTGGAATCGT+CGG + chr6_3:97985552-97985571 None:intergenic 30.0%
!!! CGTGATTTTTAGGTTTTGTT+TGG - chr6_3:97985871-97985890 Msa0967880:CDS 30.0%
! TTGATTTTGAATTCTGGGTT+TGG - chr6_3:97986095-97986114 Msa0967880:intron 30.0%
!! TTTTTATTTGGGTCTGTAGA+CGG + chr6_3:97986337-97986356 None:intergenic 30.0%
ATGAATTAGTTGAAGTCGTA+AGG - chr6_3:97986361-97986380 Msa0967880:intron 30.0%
TGAATTAGTTGAAGTCGTAA+GGG - chr6_3:97986362-97986381 Msa0967880:intron 30.0%
ATGGAAAAAATTCAGTTGAG+AGG - chr6_3:97986435-97986454 Msa0967880:intron 30.0%
TGGAAAAAATTCAGTTGAGA+GGG - chr6_3:97986436-97986455 Msa0967880:intron 30.0%
CATTTAGCAACTATTCAAAG+AGG - chr6_3:97986566-97986585 Msa0967880:intron 30.0%
ACTATTCAAAGAGGGAAATT+TGG - chr6_3:97986575-97986594 Msa0967880:intron 30.0%
CTATTCAAAGAGGGAAATTT+GGG - chr6_3:97986576-97986595 Msa0967880:intron 30.0%
GATGACAGAAATTTATCAAG+TGG - chr6_3:97986612-97986631 Msa0967880:intron 30.0%
!!! CGAGAGTATAATGTTGATTT+TGG - chr6_3:97986699-97986718 Msa0967880:intron 30.0%
!!! GAGTATAATGTTGATTTTGG+TGG - chr6_3:97986702-97986721 Msa0967880:intron 30.0%
!! ATCACATTCCTTTAAAATGG+CGG - chr6_3:97986744-97986763 Msa0967880:intron 30.0%
!! ATCACATTCCTTTAAAATGG+CGG - chr6_3:97986744-97986763 Msa0967880:intron 30.0%
!! TTCCTGTTGTTTCAAACTAT+TGG - chr6_3:97986978-97986997 Msa0967880:intron 30.0%
! AACCAATAGTTTGAAACAAC+AGG + chr6_3:97986983-97987002 None:intergenic 30.0%
AACATGGTAAAACTGTAGAA+TGG - chr6_3:97987094-97987113 Msa0967880:intron 30.0%
TTGTTCCTATTTACGAAACA+CGG - chr6_3:97987151-97987170 Msa0967880:intron 30.0%
!!! CCGTACAAATTGTTTTTGAT+TGG + chr6_3:97987177-97987196 None:intergenic 30.0%
AAAAACAATTTGTACGGGAT+GGG - chr6_3:97987180-97987199 Msa0967880:intron 30.0%
TTTCAAAGGACATTCAACTT+GGG - chr6_3:97987275-97987294 Msa0967880:intron 30.0%
!!! CCCTTTTTTAGATACTTTTC+TGG + chr6_3:97987354-97987373 None:intergenic 30.0%
AAAATATAAGAACCCGACTA+AGG + chr6_3:97987482-97987501 None:intergenic 30.0%
! TGTGATCAATTTTACATACG+AGG - chr6_3:97987730-97987749 Msa0967880:intron 30.0%
!!! AATTTTCTGGCTTCATATGT+TGG + chr6_3:97987880-97987899 None:intergenic 30.0%
! TACTTTTGCAGTCATTTCTT+GGG + chr6_3:97987973-97987992 None:intergenic 30.0%
!! TTACTTTTGCAGTCATTTCT+TGG + chr6_3:97987974-97987993 None:intergenic 30.0%
! TATGATTGGCAAAACTTTTG+AGG - chr6_3:97988040-97988059 Msa0967880:intron 30.0%
!!! ACCATTTTAAGGGTATTTTG+GGG + chr6_3:97988560-97988579 None:intergenic 30.0%
TTTCCTGTTAAAATCCATAG+CGG - chr6_3:97988605-97988624 Msa0967880:intron 30.0%
!!! TCTTTCTCCTTTTTTGTGAT+TGG - chr6_3:97989190-97989209 Msa0967880:intron 30.0%
!!! CTTTCTCCTTTTTTGTGATT+GGG - chr6_3:97989191-97989210 Msa0967880:intron 30.0%
TTTCTACCCAATCACAAAAA+AGG + chr6_3:97989200-97989219 None:intergenic 30.0%
!! ATTTTTCAACAAATGGATGC+TGG + chr6_3:97989579-97989598 None:intergenic 30.0%
!! TTCTTTTGTTGATCTAAGGT+GGG - chr6_3:97989707-97989726 Msa0967880:intron 30.0%
AAATGTTGTGCGTAAGATAT+TGG + chr6_3:97989892-97989911 None:intergenic 30.0%
CAAGAATAGATTCAACATAC+CGG + chr6_3:97989924-97989943 None:intergenic 30.0%
AATCTATTCTTGATGTGTAC+TGG - chr6_3:97989932-97989951 Msa0967880:CDS 30.0%
ATCTATTCTTGATGTGTACT+GGG - chr6_3:97989933-97989952 Msa0967880:CDS 30.0%
! ATTTAATGGATACACTCAGA+TGG - chr6_3:97990092-97990111 Msa0967880:CDS 30.0%
AATTTACAGTTGCTTAGACA+AGG - chr6_3:97990139-97990158 Msa0967880:CDS 30.0%
ATTTACAGTTGCTTAGACAA+GGG - chr6_3:97990140-97990159 Msa0967880:CDS 30.0%
ACTATATCTTAAGCCAAATC+AGG + chr6_3:97990222-97990241 None:intergenic 30.0%
!! AGTTACGTTTTAATGTATGG+TGG - chr6_3:97990314-97990333 Msa0967880:five_prime_UTR 30.0%
TGGCAAATGTCGAAATTGTT+AGG - chr6_3:97986239-97986258 Msa0967880:intron 35.0%
AAATGTCGAAATTGTTAGGC+CGG - chr6_3:97986243-97986262 Msa0967880:intron 35.0%
TCCACAAGAAACACACAAAT+GGG + chr6_3:97986304-97986323 None:intergenic 35.0%
TTCCACAAGAAACACACAAA+TGG + chr6_3:97986305-97986324 None:intergenic 35.0%
GGAAAAAATTCAGTTGAGAG+GGG - chr6_3:97986437-97986456 Msa0967880:intron 35.0%
AGTAGTGAGTAATCTCAATC+GGG + chr6_3:97986492-97986511 None:intergenic 35.0%
CAGTAGTGAGTAATCTCAAT+CGG + chr6_3:97986493-97986512 None:intergenic 35.0%
!! TTCAAACTCCGCCATTTTAA+AGG + chr6_3:97986755-97986774 None:intergenic 35.0%
!!! CGACAGTATAGTGTTGATTT+TGG - chr6_3:97986829-97986848 Msa0967880:intron 35.0%
!!! CAGTATAGTGTTGATTTTGG+TGG - chr6_3:97986832-97986851 Msa0967880:intron 35.0%
!! TTCAAACTCCGCCATTTTAA+AGG + chr6_3:97986755-97986774 None:intergenic 35.0%
!!! GATTTGATAGTGTGTGGTTT+TGG - chr6_3:97986941-97986960 Msa0967880:intron 35.0%
ACAGTATCACTTGAAACAAC+AGG + chr6_3:97987025-97987044 None:intergenic 35.0%
ACATCGAAAGATCTGCTTAA+GGG - chr6_3:97987117-97987136 Msa0967880:intron 35.0%
CAAAAACAATTTGTACGGGA+TGG - chr6_3:97987179-97987198 Msa0967880:intron 35.0%
CTTTCAAAGGACATTCAACT+TGG - chr6_3:97987274-97987293 Msa0967880:intron 35.0%
GGTAACTGTACATATTATGC+TGG - chr6_3:97987390-97987409 Msa0967880:intron 35.0%
CTGTACATATTATGCTGGAA+AGG - chr6_3:97987395-97987414 Msa0967880:intron 35.0%
!!! TGGATTTTGGAAGTGTTGAT+TGG - chr6_3:97987424-97987443 Msa0967880:intron 35.0%
! TGATTGGTCAAAAGTGATGA+AGG - chr6_3:97987440-97987459 Msa0967880:intron 35.0%
TCAAAAGTGATGAAGGAACA+TGG - chr6_3:97987447-97987466 Msa0967880:intron 35.0%
CAAAAGTGATGAAGGAACAT+GGG - chr6_3:97987448-97987467 Msa0967880:intron 35.0%
CAACTATTGAATCATGCATC+TGG + chr6_3:97987548-97987567 None:intergenic 35.0%
TATCCTCAAAAACAAGATGC+CGG + chr6_3:97987666-97987685 None:intergenic 35.0%
TTTGAGGATAACTATGACAC+TGG - chr6_3:97987676-97987695 Msa0967880:intron 35.0%
ATATCTGCCTCAATGAATAG+TGG + chr6_3:97987711-97987730 None:intergenic 35.0%
AAACACTACTACTAGATTGC+AGG - chr6_3:97987906-97987925 Msa0967880:intron 35.0%
AACACTACTACTAGATTGCA+GGG - chr6_3:97987907-97987926 Msa0967880:intron 35.0%
TGCAAGACTCTAATAAATGG+TGG + chr6_3:97988015-97988034 None:intergenic 35.0%
TAGTACTCAATCCCAAATAG+CGG - chr6_3:97988085-97988104 Msa0967880:intron 35.0%
GATAGATGGAACATAAACAG+TGG - chr6_3:97988379-97988398 Msa0967880:CDS 35.0%
! ATCGTGTTTTCTGTGTTTTG+CGG - chr6_3:97988489-97988508 Msa0967880:CDS 35.0%
AGAGAGTTGGGAAAATGTTA+GGG - chr6_3:97988522-97988541 Msa0967880:CDS 35.0%
!!! CCATTTTAAGGGTATTTTGG+GGG + chr6_3:97988559-97988578 None:intergenic 35.0%
!! AATCCGCTATGGATTTTAAC+AGG + chr6_3:97988611-97988630 None:intergenic 35.0%
ATAGCTGCTATAGTGAGTAA+CGG + chr6_3:97988656-97988675 None:intergenic 35.0%
CACTATAGCAGCTATAATAG+CGG - chr6_3:97988661-97988680 Msa0967880:intron 35.0%
TTAAACCATAGTGGTCACTA+CGG + chr6_3:97988720-97988739 None:intergenic 35.0%
TGATGACATGTATATATGGG+AGG + chr6_3:97988903-97988922 None:intergenic 35.0%
AAAGGAAAACTGGGAAAGAA+AGG + chr6_3:97988942-97988961 None:intergenic 35.0%
TTCTTTCCTCTTACCTTCTT+TGG + chr6_3:97989099-97989118 None:intergenic 35.0%
! TTTTGTGATTGGGTAGAAAC+CGG - chr6_3:97989201-97989220 Msa0967880:intron 35.0%
AAAGACTAGTAAACAGTTGC+TGG - chr6_3:97989383-97989402 Msa0967880:intron 35.0%
!! TGGAACTTTCAAGTTGCTAT+TGG - chr6_3:97989445-97989464 Msa0967880:intron 35.0%
!! CGTTTTGGTCGCAAAAATAT+AGG - chr6_3:97989536-97989555 Msa0967880:intron 35.0%
CGCAAAAATATAGGCAATGT+TGG - chr6_3:97989545-97989564 Msa0967880:intron 35.0%
! GTTCTTTTGTTGATCTAAGG+TGG - chr6_3:97989706-97989725 Msa0967880:intron 35.0%
!! TCTTTTGTTGATCTAAGGTG+GGG - chr6_3:97989708-97989727 Msa0967880:intron 35.0%
TTAAAGACAGTGATGAAGCT+AGG - chr6_3:97989743-97989762 Msa0967880:intron 35.0%
GTCAAGAAGGAAGAAATTCT+GGG - chr6_3:97989771-97989790 Msa0967880:intron 35.0%
! ATATCTGGTTTGATGAGTGA+GGG + chr6_3:97989983-97990002 None:intergenic 35.0%
CCATCTTCAACAATAGGATT+GGG + chr6_3:97990021-97990040 None:intergenic 35.0%
CCAATCCTATTGTTGAAGAT+GGG - chr6_3:97990019-97990038 Msa0967880:CDS 35.0%
ATATTTGCTTCAGCCTGATT+TGG - chr6_3:97990206-97990225 Msa0967880:CDS 35.0%
AAGAAAGGTTGAAGCTCTGT+TGG + chr6_3:97985597-97985616 None:intergenic 40.0%
ATGGCGAGTTTGAGAAAGAA+AGG + chr6_3:97985612-97985631 None:intergenic 40.0%
GAAGAGAAGAAGAAATGCGA+CGG + chr6_3:97985651-97985670 None:intergenic 40.0%
!! AGGTTTGAAGAAAGCGTTAG+AGG + chr6_3:97985723-97985742 None:intergenic 40.0%
TCCATCCAAACCAAAAAACG+CGG + chr6_3:97985756-97985775 None:intergenic 40.0%
! TGGTTTGGATGGACTTGATT+CGG - chr6_3:97985763-97985782 Msa0967880:CDS 40.0%
!!! GATGGACTTGATTCGGATTT+TGG - chr6_3:97985770-97985789 Msa0967880:CDS 40.0%
!! GGAGTTGGTAATTTCGTGTA+TGG - chr6_3:97985928-97985947 Msa0967880:intron 40.0%
TGACGCTGATGAATAGCATT+AGG - chr6_3:97986132-97986151 Msa0967880:intron 40.0%
TTGAGCTAGGACTTATGGAT+TGG + chr6_3:97986218-97986237 None:intergenic 40.0%
TCCATAAGTCCTAGCTCAAT+TGG - chr6_3:97986219-97986238 Msa0967880:intron 40.0%
ACAAGAAACACACAAATGGG+AGG + chr6_3:97986301-97986320 None:intergenic 40.0%
TCCCATTTGTGTGTTTCTTG+TGG - chr6_3:97986300-97986319 Msa0967880:intron 40.0%
AGTTGAAGTCGTAAGGGATT+TGG - chr6_3:97986368-97986387 Msa0967880:intron 40.0%
GTTGAAGTCGTAAGGGATTT+GGG - chr6_3:97986369-97986388 Msa0967880:intron 40.0%
! TTTTCCATACGCAAGAGTCA+GGG + chr6_3:97986423-97986442 None:intergenic 40.0%
! TTTTTCCATACGCAAGAGTC+AGG + chr6_3:97986424-97986443 None:intergenic 40.0%
GTAGTGAGTAATCTCAATCG+GGG + chr6_3:97986491-97986510 None:intergenic 40.0%
GAAACTTCATACCTGCAACA+AGG - chr6_3:97986523-97986542 Msa0967880:intron 40.0%
AAGTTGTACTTGCTTCACTG+TGG - chr6_3:97986773-97986792 Msa0967880:intron 40.0%
AAGTTGTACTTGCTTGACTG+TGG - chr6_3:97986903-97986922 Msa0967880:intron 40.0%
!! GCGAATGATTTGATAGTGTG+TGG - chr6_3:97986935-97986954 Msa0967880:intron 40.0%
GACATCGAAAGATCTGCTTA+AGG - chr6_3:97987116-97987135 Msa0967880:intron 40.0%
CATCGAAAGATCTGCTTAAG+GGG - chr6_3:97987118-97987137 Msa0967880:intron 40.0%
ATTGGCCGTGTTTCGTAAAT+AGG + chr6_3:97987159-97987178 None:intergenic 40.0%
! TTGGACTTTGGTTCATTGCT+CGG - chr6_3:97987217-97987236 Msa0967880:intron 40.0%
! GACATTCAACTTGGGTTTTG+CGG - chr6_3:97987283-97987302 Msa0967880:intron 40.0%
! GGATTGTTTCTCTTTCACCT+AGG - chr6_3:97987325-97987344 Msa0967880:intron 40.0%
! AGATACTTTTCTGGATGCCT+AGG + chr6_3:97987345-97987364 None:intergenic 40.0%
CAGTTACCATCAACATATGC+AGG + chr6_3:97987378-97987397 None:intergenic 40.0%
TTATGCTGGAAAGGACTTTG+TGG - chr6_3:97987404-97987423 Msa0967880:intron 40.0%
! GGAAAGGACTTTGTGGATTT+TGG - chr6_3:97987411-97987430 Msa0967880:intron 40.0%
GATGAAGGAACATGGGATTA+AGG - chr6_3:97987455-97987474 Msa0967880:intron 40.0%
ATGGGATTAAGGACCTTAGT+CGG - chr6_3:97987466-97987485 Msa0967880:intron 40.0%
GATAACTATGACACTGGTAC+TGG - chr6_3:97987682-97987701 Msa0967880:intron 40.0%
!!! CAAAACTTTTGAGGCTGACA+CGG - chr6_3:97988049-97988068 Msa0967880:intron 40.0%
ACATAAACAGTGGAAGACGA+TGG - chr6_3:97988389-97988408 Msa0967880:CDS 40.0%
GAGAGAGTTGGGAAAATGTT+AGG - chr6_3:97988521-97988540 Msa0967880:CDS 40.0%
CCCCCAAAATACCCTTAAAA+TGG - chr6_3:97988556-97988575 Msa0967880:CDS 40.0%
TGAGCACACTTAAACCATAG+TGG + chr6_3:97988729-97988748 None:intergenic 40.0%
TCATTGTAGCATCAAAGCGA+AGG + chr6_3:97988765-97988784 None:intergenic 40.0%
! CTTTCCCAGTTTTCCTTTTC+TGG - chr6_3:97988944-97988963 Msa0967880:intron 40.0%
GAGACCAGAAAAGGAAAACT+GGG + chr6_3:97988951-97988970 None:intergenic 40.0%
ACGAAATAGGAGACCAGAAA+AGG + chr6_3:97988960-97988979 None:intergenic 40.0%
GATGAAGACCATGACGAAAT+AGG + chr6_3:97988973-97988992 None:intergenic 40.0%
ATCTTCTGTTAGTGTCCTAG+CGG - chr6_3:97989030-97989049 Msa0967880:intron 40.0%
CAATATATGTAGACACCGCT+AGG + chr6_3:97989048-97989067 None:intergenic 40.0%
ATGAAGCACGAATGCAAACA+CGG + chr6_3:97989072-97989091 None:intergenic 40.0%
TGTTTGCATTCGTGCTTCAT+AGG - chr6_3:97989072-97989091 Msa0967880:intron 40.0%
ATAGGACCAAAGAAGGTAAG+AGG - chr6_3:97989090-97989109 Msa0967880:intron 40.0%
TTTGTGATTGGGTAGAAACC+GGG - chr6_3:97989202-97989221 Msa0967880:intron 40.0%
!! CTTTTGTTGATCTAAGGTGG+GGG - chr6_3:97989709-97989728 Msa0967880:intron 40.0%
GGTCAAGAAGGAAGAAATTC+TGG - chr6_3:97989770-97989789 Msa0967880:intron 40.0%
CACAACATTTCCAGAATAGC+CGG - chr6_3:97989902-97989921 Msa0967880:CDS 40.0%
! ATTCAACATACCGGCTATTC+TGG + chr6_3:97989915-97989934 None:intergenic 40.0%
! CATATCTGGTTTGATGAGTG+AGG + chr6_3:97989984-97990003 None:intergenic 40.0%
CCCAATCCTATTGTTGAAGA+TGG - chr6_3:97990018-97990037 Msa0967880:CDS 40.0%
CCCATCTTCAACAATAGGAT+TGG + chr6_3:97990022-97990041 None:intergenic 40.0%
TATCGCCCATCTTCAACAAT+AGG + chr6_3:97990027-97990046 None:intergenic 40.0%
ATTGTTGAAGATGGGCGATA+TGG - chr6_3:97990027-97990046 Msa0967880:CDS 40.0%
! CAAGGGTATGTTGTAGTTGA+AGG - chr6_3:97990157-97990176 Msa0967880:CDS 40.0%
CTATCACATTCACCGGAACA+CGG - chr6_3:97985414-97985433 Msa0967880:three_prime_UTR 45.0%
!!! GATTCGGATTTTGGTGCTCT+TGG - chr6_3:97985779-97985798 Msa0967880:CDS 45.0%
TTCAGGATGTTGATCCCGAA+TGG - chr6_3:97986043-97986062 Msa0967880:intron 45.0%
GCCAATTGAGCTAGGACTTA+TGG + chr6_3:97986223-97986242 None:intergenic 45.0%
CGACATTTGCCAATTGAGCT+AGG + chr6_3:97986231-97986250 None:intergenic 45.0%
ATCTCAATCGGGGAACTTGT+GGG + chr6_3:97986481-97986500 None:intergenic 45.0%
AATCTCAATCGGGGAACTTG+TGG + chr6_3:97986482-97986501 None:intergenic 45.0%
TTGTACTTGCTTCACTGTGG+AGG - chr6_3:97986776-97986795 Msa0967880:intron 45.0%
GGTAAAGGCAGATCGAAACA+TGG - chr6_3:97987078-97987097 Msa0967880:intron 45.0%
! CAATTTGTACGGGATGGGTT+TGG - chr6_3:97987185-97987204 Msa0967880:intron 45.0%
TGAACCAAAGTCCAAAGCTG+TGG + chr6_3:97987212-97987231 None:intergenic 45.0%
AGAGAAACAATCCGTGTGTC+TGG + chr6_3:97987318-97987337 None:intergenic 45.0%
AAGGGACCTGCATATGTTGA+TGG - chr6_3:97987369-97987388 Msa0967880:intron 45.0%
TGGGATTAAGGACCTTAGTC+GGG - chr6_3:97987467-97987486 Msa0967880:intron 45.0%
!! ATCGAACAAGCTCTGAAAGC+TGG - chr6_3:97987637-97987656 Msa0967880:intron 45.0%
!! TCGAACAAGCTCTGAAAGCT+GGG - chr6_3:97987638-97987657 Msa0967880:intron 45.0%
!!! GTTCCGGCATCTTGTTTTTG+AGG - chr6_3:97987660-97987679 Msa0967880:intron 45.0%
CTGGTGACCACTATTCATTG+AGG - chr6_3:97987701-97987720 Msa0967880:intron 45.0%
CAATGAGAGCAAAGAACCAG+CGG - chr6_3:97988354-97988373 Msa0967880:CDS 45.0%
AAGAACCAGCGGAAGATAGA+TGG - chr6_3:97988365-97988384 Msa0967880:CDS 45.0%
ATGTTCCATCTATCTTCCGC+TGG + chr6_3:97988373-97988392 None:intergenic 45.0%
!! ATTGGTTTGCAGATCGTGTG+AGG - chr6_3:97988447-97988466 Msa0967880:CDS 45.0%
!! TTGGTTTGCAGATCGTGTGA+GGG - chr6_3:97988448-97988467 Msa0967880:CDS 45.0%
!! TAGCGGATTCTAATCCGCTA+TGG + chr6_3:97988622-97988641 None:intergenic 45.0%
GGAGACCAGAAAAGGAAAAC+TGG + chr6_3:97988952-97988971 None:intergenic 45.0%
TCTGGTCTCCTATTTCGTCA+TGG - chr6_3:97988962-97988981 Msa0967880:intron 45.0%
GTGCTTCATAGGACCAAAGA+AGG - chr6_3:97989083-97989102 Msa0967880:intron 45.0%
ACTAGTAAACAGTTGCTGGC+TGG - chr6_3:97989387-97989406 Msa0967880:intron 45.0%
ACAGTGATGAAGCTAGGATC+AGG - chr6_3:97989749-97989768 Msa0967880:intron 45.0%
AAGCTAGGATCAGGTCAAGA+AGG - chr6_3:97989758-97989777 Msa0967880:intron 45.0%
!! GGCGATATGGTTTGTTCCAA+CGG - chr6_3:97990040-97990059 Msa0967880:CDS 45.0%
!! TATGGTTTGTTCCAACGGCT+TGG - chr6_3:97990045-97990064 Msa0967880:CDS 45.0%
AGAGTGTGTATGCCGTGTTC+CGG + chr6_3:97985429-97985448 None:intergenic 50.0%
!! TGGAATCGTCGGCGTTGATT+AGG + chr6_3:97985541-97985560 None:intergenic 50.0%
CGGTGAGACAAGGAACGTAA+TGG + chr6_3:97985631-97985650 None:intergenic 50.0%
AGAAATGCGACGGTGAGACA+AGG + chr6_3:97985641-97985660 None:intergenic 50.0%
!!! GCCGCGTTTTTTGGTTTGGA+TGG - chr6_3:97985752-97985771 Msa0967880:CDS 50.0%
GCGCAAAGAGACTTACAGCA+GGG + chr6_3:97985809-97985828 None:intergenic 50.0%
AGCGCAAAGAGACTTACAGC+AGG + chr6_3:97985810-97985829 None:intergenic 50.0%
ATTGTTAGGCCGGATATCCG+TGG - chr6_3:97986253-97986272 Msa0967880:intron 50.0%
TTGTTAGGCCGGATATCCGT+GGG - chr6_3:97986254-97986273 Msa0967880:intron 50.0%
GGTTTGAATCTAGCACCCCA+CGG + chr6_3:97986273-97986292 None:intergenic 50.0%
! TGGGGTGCTAGATTCAAACC+TGG - chr6_3:97986273-97986292 Msa0967880:intron 50.0%
! GGGGTGCTAGATTCAAACCT+GGG - chr6_3:97986274-97986293 Msa0967880:intron 50.0%
ATTTGGGTCTGTAGACGGAG+TGG + chr6_3:97986332-97986351 None:intergenic 50.0%
ATTTGGGCCCCTTAAGCAAG+TGG - chr6_3:97986385-97986404 Msa0967880:intron 50.0%
! ACCCATGCCACTTGCTTAAG+GGG + chr6_3:97986395-97986414 None:intergenic 50.0%
! GACCCATGCCACTTGCTTAA+GGG + chr6_3:97986396-97986415 None:intergenic 50.0%
CATACGCAAGAGTCAGGGAA+CGG + chr6_3:97986418-97986437 None:intergenic 50.0%
TCTCAATCGGGGAACTTGTG+GGG + chr6_3:97986480-97986499 None:intergenic 50.0%
TTTGGGGGTTACCTTGTTGC+AGG + chr6_3:97986537-97986556 None:intergenic 50.0%
GAAAGATCTGCTTAAGGGGC+TGG - chr6_3:97987122-97987141 Msa0967880:intron 50.0%
ATGGGTTTGGACCACAGCTT+TGG - chr6_3:97987198-97987217 Msa0967880:intron 50.0%
!! TGGACCACAGCTTTGGACTT+TGG - chr6_3:97987205-97987224 Msa0967880:intron 50.0%
! GACTTTGGTTCATTGCTCGG+TGG - chr6_3:97987220-97987239 Msa0967880:intron 50.0%
! CATTGCTCGGTGGCTTAAAC+CGG - chr6_3:97987230-97987249 Msa0967880:intron 50.0%
CCACTCTCGATCATCAGATC+CGG + chr6_3:97987252-97987271 None:intergenic 50.0%
ATCGAGAGTGGCGCTTTCAA+AGG - chr6_3:97987261-97987280 Msa0967880:intron 50.0%
!! AAGCTCTGAAAGCTGGGTTC+CGG - chr6_3:97987644-97987663 Msa0967880:intron 50.0%
GGCAGAGAAGAGAGAGAGTT+GGG - chr6_3:97988510-97988529 Msa0967880:CDS 50.0%
AGTGAGTAACGGTAGCAGAG+CGG + chr6_3:97988645-97988664 None:intergenic 50.0%
ATAGCGGCCGCTATCTTGAA+CGG - chr6_3:97988677-97988696 Msa0967880:intron 50.0%
AGCGGTACCGTTCAAGATAG+CGG + chr6_3:97988687-97988706 None:intergenic 50.0%
ACCATAGTGGTCACTACGGT+GGG + chr6_3:97988716-97988735 None:intergenic 50.0%
AACCATAGTGGTCACTACGG+TGG + chr6_3:97988717-97988736 None:intergenic 50.0%
ATGGGAGGACATGCATATGC+AGG + chr6_3:97988888-97988907 None:intergenic 50.0%
AAAGTTCCAACCCCCAGGAA+CGG + chr6_3:97989434-97989453 None:intergenic 50.0%
ACTTGAAAGTTCCAACCCCC+AGG + chr6_3:97989439-97989458 None:intergenic 50.0%
! AAGCATGGTGGGGAGTTAGA+GGG - chr6_3:97989833-97989852 Msa0967880:intron 50.0%
! CTGGTTTGATGAGTGAGGGA+AGG + chr6_3:97989979-97989998 None:intergenic 50.0%
AGCACGAGCAGGATCATATC+TGG + chr6_3:97989998-97990017 None:intergenic 50.0%
! TTTGTTCCAACGGCTTGGCT+TGG - chr6_3:97990050-97990069 Msa0967880:CDS 50.0%
! TTGTTCCAACGGCTTGGCTT+GGG - chr6_3:97990051-97990070 Msa0967880:CDS 50.0%
GATTAGGTCGTCGTCGTCGT+CGG + chr6_3:97985525-97985544 None:intergenic 55.0%
!!! ACGCGCCGCGTTTTTTGGTT+TGG - chr6_3:97985748-97985767 Msa0967880:CDS 55.0%
TGTTAGGCCGGATATCCGTG+GGG - chr6_3:97986255-97986274 Msa0967880:intron 55.0%
TCTAGCACCCCACGGATATC+CGG + chr6_3:97986265-97986284 None:intergenic 55.0%
ACACACAAATGGGAGGTCCC+AGG + chr6_3:97986294-97986313 None:intergenic 55.0%
GCCCCTTAAGCAAGTGGCAT+GGG - chr6_3:97986391-97986410 Msa0967880:intron 55.0%
! GGACCCATGCCACTTGCTTA+AGG + chr6_3:97986397-97986416 None:intergenic 55.0%
CGTTCCCTGACTCTTGCGTA+TGG - chr6_3:97986416-97986435 Msa0967880:intron 55.0%
AACTTGTGGGGGACACAAGG+CGG + chr6_3:97986468-97986487 None:intergenic 55.0%
CTCAATCGGGGAACTTGTGG+GGG + chr6_3:97986479-97986498 None:intergenic 55.0%
CCGGATCTGATGATCGAGAG+TGG - chr6_3:97987249-97987268 Msa0967880:intron 55.0%
GGCAAGCTATGCCAGACACA+CGG - chr6_3:97987304-97987323 Msa0967880:intron 55.0%
AGGCTGACACGGCTACGTTT+AGG - chr6_3:97988060-97988079 Msa0967880:intron 55.0%
!!! CGCTATCCCACTTTTGGGGT+CGG + chr6_3:97988121-97988140 None:intergenic 55.0%
CGACCCCAAAAGTGGGATAG+CGG - chr6_3:97988119-97988138 Msa0967880:intron 55.0%
GACCCCAAAAGTGGGATAGC+GGG - chr6_3:97988120-97988139 Msa0967880:intron 55.0%
!! CTCCCGCTATCCCACTTTTG+GGG + chr6_3:97988125-97988144 None:intergenic 55.0%
!! CCTCCCGCTATCCCACTTTT+GGG + chr6_3:97988126-97988145 None:intergenic 55.0%
! TCCTCCCGCTATCCCACTTT+TGG + chr6_3:97988127-97988146 None:intergenic 55.0%
ACAGTGGAAGACGATGGCAG+CGG - chr6_3:97988395-97988414 Msa0967880:CDS 55.0%
GCTGCGACGGTTATGGCAAT+TGG - chr6_3:97988429-97988448 Msa0967880:CDS 55.0%
CGGCAGAGAAGAGAGAGAGT+TGG - chr6_3:97988509-97988528 Msa0967880:CDS 55.0%
TAACGGTAGCAGAGCGGTAG+CGG + chr6_3:97988639-97988658 None:intergenic 55.0%
ACCCACCGTAGTGACCACTA+TGG - chr6_3:97988712-97988731 Msa0967880:intron 55.0%
TCTGTCTTTGCTGCCGTTCC+TGG - chr6_3:97989418-97989437 Msa0967880:intron 55.0%
CTGTCTTTGCTGCCGTTCCT+GGG - chr6_3:97989419-97989438 Msa0967880:intron 55.0%
TGTCTTTGCTGCCGTTCCTG+GGG - chr6_3:97989420-97989439 Msa0967880:intron 55.0%
! GAAGCATGGTGGGGAGTTAG+AGG - chr6_3:97989832-97989851 Msa0967880:intron 55.0%
! ATAGGATTGGGAGCACGAGC+AGG + chr6_3:97990009-97990028 None:intergenic 55.0%
GTTTACCCAAGCCAAGCCGT+TGG + chr6_3:97990059-97990078 None:intergenic 55.0%
!! GCGGTGGTGGTGGTTTGCTT+GGG + chr6_3:97985452-97985471 None:intergenic 60.0%
! CTCTAACATGGCGGTGGTGG+TGG + chr6_3:97985462-97985481 None:intergenic 60.0%
CCACCACCGCCATGTTAGAG+CGG - chr6_3:97985462-97985481 Msa0967880:three_prime_UTR 60.0%
GAGGGTCCGCTCTAACATGG+CGG + chr6_3:97985471-97985490 None:intergenic 60.0%
GGAGAGGGTCCGCTCTAACA+TGG + chr6_3:97985474-97985493 None:intergenic 60.0%
AAAAACGCGGCGCGTGAAGC+AGG + chr6_3:97985743-97985762 None:intergenic 60.0%
!!! GCTTCACGCGCCGCGTTTTT+TGG - chr6_3:97985743-97985762 Msa0967880:CDS 60.0%
GGCCCCTTAAGCAAGTGGCA+TGG - chr6_3:97986390-97986409 Msa0967880:intron 60.0%
ACTTGTGGGGGACACAAGGC+GGG + chr6_3:97986467-97986486 None:intergenic 60.0%
GGGAACTTGTGGGGGACACA+AGG + chr6_3:97986471-97986490 None:intergenic 60.0%
CAGCGTCCGACCCCAAAAGT+GGG - chr6_3:97988112-97988131 Msa0967880:intron 60.0%
!! CCCAAAAGTGGGATAGCGGG+AGG - chr6_3:97988123-97988142 Msa0967880:intron 60.0%
GACGATGGCAGCGGCACAAT+TGG - chr6_3:97988404-97988423 Msa0967880:CDS 60.0%
GATGGCAGCGGCACAATTGG+CGG - chr6_3:97988407-97988426 Msa0967880:CDS 60.0%
ATTGGCGGCTGCGACGGTTA+TGG - chr6_3:97988422-97988441 Msa0967880:CDS 60.0%
! CACTACGGTGGGTGTCGTAG+CGG + chr6_3:97988705-97988724 None:intergenic 60.0%
GTCTTTGCTGCCGTTCCTGG+GGG - chr6_3:97989421-97989440 Msa0967880:intron 60.0%
TGGGAACTCCCACCAGTTGC+TGG - chr6_3:97989952-97989971 Msa0967880:CDS 60.0%
GGGAACTCCCACCAGTTGCT+GGG - chr6_3:97989953-97989972 Msa0967880:CDS 60.0%
!! GGCGGTGGTGGTGGTTTGCT+TGG + chr6_3:97985453-97985472 None:intergenic 65.0%
CCGCTCTAACATGGCGGTGG+TGG + chr6_3:97985465-97985484 None:intergenic 65.0%
GGTCCGCTCTAACATGGCGG+TGG + chr6_3:97985468-97985487 None:intergenic 65.0%
AGTCGCCGTGTGAGTTGCCG+CGG + chr6_3:97985502-97985521 None:intergenic 65.0%
GACGCTGCGCGCCGCTATTT+GGG + chr6_3:97988099-97988118 None:intergenic 65.0%
GCAGCGTCCGACCCCAAAAG+TGG - chr6_3:97988111-97988130 Msa0967880:intron 65.0%
GGCACAATTGGCGGCTGCGA+CGG - chr6_3:97988416-97988435 Msa0967880:CDS 65.0%
TTGCTGCCGTTCCTGGGGGT+TGG - chr6_3:97989425-97989444 Msa0967880:intron 65.0%
ACTCCCCACCATGCTTCCCC+CGG + chr6_3:97989829-97989848 None:intergenic 65.0%
GGGAAGGCCCAGCAACTGGT+GGG + chr6_3:97989963-97989982 None:intergenic 65.0%
AGGGAAGGCCCAGCAACTGG+TGG + chr6_3:97989964-97989983 None:intergenic 65.0%
GTGAGGGAAGGCCCAGCAAC+TGG + chr6_3:97989967-97989986 None:intergenic 65.0%
TCCCGCCGCGGCAACTCACA+CGG - chr6_3:97985494-97985513 Msa0967880:three_prime_UTR 70.0%
GGACGCTGCGCGCCGCTATT+TGG + chr6_3:97988100-97988119 None:intergenic 70.0%
GTTGCCGCGGCGGGAGGAGA+GGG + chr6_3:97985489-97985508 None:intergenic 75.0%
AGTTGCCGCGGCGGGAGGAG+AGG + chr6_3:97985490-97985509 None:intergenic 75.0%
GTGTGAGTTGCCGCGGCGGG+AGG + chr6_3:97985495-97985514 None:intergenic 75.0%
GCCGTGTGAGTTGCCGCGGC+GGG + chr6_3:97985498-97985517 None:intergenic 75.0%
CGCCGTGTGAGTTGCCGCGG+CGG + chr6_3:97985499-97985518 None:intergenic 75.0%
! CGGACCCTCTCCTCCCGCCG+CGG - chr6_3:97985482-97985501 Msa0967880:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 97985325 97990337 97985325 ID=Msa0967880;Name=Msa0967880
chr6_3 mRNA 97985325 97990337 97985325 ID=Msa0967880-mRNA-1;Parent=Msa0967880;Name=Msa0967880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=70|1|1|1|1|1|4|197|464
chr6_3 exon 97985325 97985937 97985325 ID=Msa0967880-mRNA-1:exon:18318;Parent=Msa0967880-mRNA-1
chr6_3 exon 97987911 97988026 97987911 ID=Msa0967880-mRNA-1:exon:18317;Parent=Msa0967880-mRNA-1
chr6_3 exon 97988133 97988577 97988133 ID=Msa0967880-mRNA-1:exon:18316;Parent=Msa0967880-mRNA-1
chr6_3 exon 97989850 97990337 97989850 ID=Msa0967880-mRNA-1:exon:18315;Parent=Msa0967880-mRNA-1
chr6_3 five_prime_UTR 97990268 97990337 97990268 ID=Msa0967880-mRNA-1:five_prime_utr;Parent=Msa0967880-mRNA-1
chr6_3 CDS 97989850 97990267 97989850 ID=Msa0967880-mRNA-1:cds;Parent=Msa0967880-mRNA-1
chr6_3 CDS 97988133 97988577 97988133 ID=Msa0967880-mRNA-1:cds;Parent=Msa0967880-mRNA-1
chr6_3 CDS 97987911 97988026 97987911 ID=Msa0967880-mRNA-1:cds;Parent=Msa0967880-mRNA-1
chr6_3 CDS 97985522 97985937 97985522 ID=Msa0967880-mRNA-1:cds;Parent=Msa0967880-mRNA-1
chr6_3 three_prime_UTR 97985325 97985521 97985325 ID=Msa0967880-mRNA-1:three_prime_utr;Parent=Msa0967880-mRNA-1
Gene Sequence

>Msa0967880

ATGTCATCACCAAAACTATCTATCACATTCACCGGAACACGGCATACACACTCTCCCAAGCAAACCACCACCACCGCCATGTTAGAGCGGACCCTCTCCTCCCGCCGCGGCAACTCACACGGCGACTCCGACGACGACGACGACCTAATCAACGCCGACGATTCCAAAACCAAAAAACAACACATTCTCTTTCGCATCACCAACAGAGCTTCAACCTTTCTTTCTCAAACTCGCCATTACGTTCCTTGTCTCACCGTCGCATTTCTTCTTCTCTTCGCTTTCTCTTTCTTTTTCTTCTTCACATCTCGTAGCTTCGTTTGCATCTCCTCTAACGCTTTCTTCAAACCTGCTTCACGCGCCGCGTTTTTTGGTTTGGATGGACTTGATTCGGATTTTGGTGCTCTTGGTGTGCCCTGCTGCAGATCGAAACATGGTAAAACTGTAGAATGGACATCGAAAGATCTGCTTAAGGGGCTGGAAGAGTTTGTTCCTATTTACGAAACACGGCCAATCAAAAACAATTTGTACGGGATGGGTTTGGACCACAGCTTTGGACTTTGGTTCATTGCTCGGTGGCTTAAACCGGATCTGATGATCGAGAGTGGCGCTTTCAAAGGACATTCAACTTGGGTTTTGCGGCAAGCTATGCCAGACACACGGATTGTTTCTCTTTCACCTAGGCATCCAGAAAAGTATCTAAAAAAGGGACCTGCATATGTTGATGGTAACTGTACATATTATGCTGGAAAGGACTTTGTGGATTTTGGAAGTGTTGATTGGTCAAAAGTGATGAAGGAACATGGGATTAAGGACCTTAGTCGGGTTCTTATATTTTTTGACGACCATCAAAATGAATTGAAAAGAATCGAACAAGCTCTGAAAGCTGGGTTCCGGCATCTTGTTTTTGAGGATAACTATGACACTGGTACTGGTGACCACTATTCATTGAGGCAGATATGTGATCAATTTTACATACGAGGTGGGGGACACAGTTGCTTTAAAGACAGTGATGAAGCTAGGATCAGGTCAAGAAGGAAGAAATTCTGGGAGAAAGCAGTTGATATCGAAGAACTGTGTGGACCGGGGGAAGCATGGTGGGGAGTTAGAGGGTACATGCGCGACAACTTTAATCATAGTAATAAGCCAATATCTTACGCACAACATTTCCAGAATAGCCGGTATGTTGAATCTATTCTTGATGTGTACTGGGAACTCCCACCAGTTGCTGGGCCTTCCCTCACTCATCAAACCAGATATGATCCTGCTCGTGCTCCCAATCCTATTGTTGAAGATGGGCGATATGGTTTGTTCCAACGGCTTGGCTTGGGTAAACTTGACAATTCTGTATTTAATGGATACACTCAGATGGTTTATTTACAGATATCTGAACAATAA

Protein sequence

>Msa0967880

MSSPKLSITFTGTRHTHSPKQTTTTAMLERTLSSRRGNSHGDSDDDDDLINADDSKTKKQHILFRITNRASTFLSQTRHYVPCLTVAFLLLFAFSFFFFFTSRSFVCISSNAFFKPASRAAFFGLDGLDSDFGALGVPCCRSKHGKTVEWTSKDLLKGLEEFVPIYETRPIKNNLYGMGLDHSFGLWFIARWLKPDLMIESGAFKGHSTWVLRQAMPDTRIVSLSPRHPEKYLKKGPAYVDGNCTYYAGKDFVDFGSVDWSKVMKEHGIKDLSRVLIFFDDHQNELKRIEQALKAGFRHLVFEDNYDTGTGDHYSLRQICDQFYIRGGGHSCFKDSDEARIRSRRKKFWEKAVDIEELCGPGEAWWGVRGYMRDNFNHSNKPISYAQHFQNSRYVESILDVYWELPPVAGPSLTHQTRYDPARAPNPIVEDGRYGLFQRLGLGKLDNSVFNGYTQMVYLQISEQ*